LOCUS       DARGED010000001        52244 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.001, whole genome shotgun sequence.
ACCESSION   DARGED010000001 DARGED010000000
VERSION     DARGED010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 52244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 52244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..52244
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.001"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(7..765)
                     /gene="map"
                     /locus_tag="SFZ84_000001"
     CDS             complement(7..765)
                     /gene="map"
                     /locus_tag="SFZ84_000001"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG8202183.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGIRFKELSAVLGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(775..1518)
                     /locus_tag="SFZ84_000002"
     CDS             complement(775..1518)
                     /locus_tag="SFZ84_000002"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG8202184.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDVLRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(1520..1978)
                     /locus_tag="SFZ84_000003"
     CDS             complement(1520..1978)
                     /locus_tag="SFZ84_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG8202185.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYHPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(1987..3156)
                     /gene="nhaA"
                     /locus_tag="SFZ84_000004"
     CDS             complement(1987..3156)
                     /gene="nhaA"
                     /locus_tag="SFZ84_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8202186.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSVGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3153..4301)
                     /gene="nhaA"
                     /locus_tag="SFZ84_000005"
     CDS             complement(3153..4301)
                     /gene="nhaA"
                     /locus_tag="SFZ84_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8202187.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSAIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(4444..4626)
                     /locus_tag="SFZ84_000006"
     CDS             complement(4444..4626)
                     /locus_tag="SFZ84_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG8202188.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
     gene            5503..7593
                     /locus_tag="SFZ84_000007"
     CDS             5503..7593
                     /locus_tag="SFZ84_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG8202189.1"
                     /translation="MKIFKIVFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPINNDTSKLTDNNASADLQAAAAMDARLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSTSMVDDLQGIYLDIFESSGMENKIGAVDSGLKLKIESLFSK
                     GVALIKANADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     IVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            7590..8129
                     /locus_tag="SFZ84_000008"
     CDS             7590..8129
                     /locus_tag="SFZ84_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG8202190.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            8218..9621
                     /locus_tag="SFZ84_000009"
     CDS             8218..9621
                     /locus_tag="SFZ84_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG8202191.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDRDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            9608..10900
                     /locus_tag="SFZ84_000010"
     CDS             9608..10900
                     /locus_tag="SFZ84_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202192.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGFYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFAGENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            10890..12008
                     /locus_tag="SFZ84_000011"
     CDS             10890..12008
                     /locus_tag="SFZ84_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202193.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVMISPKQDENFISNAEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFKALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIVFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSGIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            12005..12658
                     /locus_tag="SFZ84_000012"
     CDS             12005..12658
                     /locus_tag="SFZ84_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202194.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            12655..13143
                     /locus_tag="SFZ84_000013"
     CDS             12655..13143
                     /locus_tag="SFZ84_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8202195.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            13104..13607
                     /gene="traF"
                     /locus_tag="SFZ84_000014"
     CDS             13104..13607
                     /gene="traF"
                     /locus_tag="SFZ84_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG8202196.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALIFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(13617..14054)
                     /locus_tag="SFZ84_000015"
     CDS             complement(13617..14054)
                     /locus_tag="SFZ84_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG8202197.1"
                     /translation="MKKIILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQGCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(14354..14659)
                     /locus_tag="SFZ84_000016"
     CDS             complement(14354..14659)
                     /locus_tag="SFZ84_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202198.1"
                     /translation="MQNKYFQESIKPIIDQPLFKKATFYEADIVAKVDPKEYNSTQAI
                     IQKEYLDKSKYVYYKTVLILTSDGKRAKLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(14939..15023)
                     /locus_tag="SFZ84_000017"
     tRNA            complement(14939..15023)
                     /locus_tag="SFZ84_000017"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14987..14989),aa:Leu,seq:tag)
     gene            complement(15028..15104)
                     /locus_tag="SFZ84_000018"
     tRNA            complement(15028..15104)
                     /locus_tag="SFZ84_000018"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15068..15070),aa:Arg,seq:tct)
     gene            complement(15119..15195)
                     /locus_tag="SFZ84_000019"
     tRNA            complement(15119..15195)
                     /locus_tag="SFZ84_000019"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15159..15161),aa:Arg,seq:tcg)
     gene            complement(15199..15275)
                     /locus_tag="SFZ84_000020"
     tRNA            complement(15199..15275)
                     /locus_tag="SFZ84_000020"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15239..15241),aa:His,seq:gtg)
     gene            complement(15300..15377)
                     /locus_tag="SFZ84_000021"
     tRNA            complement(15300..15377)
                     /locus_tag="SFZ84_000021"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15340..15342),aa:Pro,seq:tgg)
     gene            complement(15420..16268)
                     /locus_tag="SFZ84_000022"
     CDS             complement(15420..16268)
                     /locus_tag="SFZ84_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG8202199.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNAMKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     LRDENP"
     gene            complement(16268..16930)
                     /gene="cgpA"
                     /locus_tag="SFZ84_000023"
     CDS             complement(16268..16930)
                     /gene="cgpA"
                     /locus_tag="SFZ84_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG8202200.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(16920..17123)
                     /locus_tag="SFZ84_000024"
     CDS             complement(16920..17123)
                     /locus_tag="SFZ84_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202201.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(17189..18433)
                     /gene="eno"
                     /locus_tag="SFZ84_000025"
     CDS             complement(17189..18433)
                     /gene="eno"
                     /locus_tag="SFZ84_000025"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG8202202.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSEHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYRMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(18433..19464)
                     /gene="recA"
                     /locus_tag="SFZ84_000026"
     CDS             complement(18433..19464)
                     /gene="recA"
                     /locus_tag="SFZ84_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG8202203.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            19571..20431
                     /locus_tag="SFZ84_000027"
     CDS             19571..20431
                     /locus_tag="SFZ84_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG8202204.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            20443..20712
                     /gene="fliQ"
                     /locus_tag="SFZ84_000028"
     CDS             20443..20712
                     /gene="fliQ"
                     /locus_tag="SFZ84_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG8202205.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            20709..21485
                     /locus_tag="SFZ84_000029"
     CDS             20709..21485
                     /locus_tag="SFZ84_000029"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG8202206.1"
                     /translation="MIIDFKKYSSVCIGNEFEVLVLDQICDFDGFLIGGANNLLISPK
                     PKNIGILGDGFDFIQILDQNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPNGASFGSIFKNPKNDFAGRLIEAVGLKGFNKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(21509..22279)
                     /locus_tag="SFZ84_000030"
     CDS             complement(21509..22279)
                     /locus_tag="SFZ84_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202207.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFTKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILVAKNAELNL
                     TLKDQDAKQNYQDIVNQMPKMLASVIDNEIKKLKLTIN"
     gene            complement(22320..23084)
                     /locus_tag="SFZ84_000031"
     CDS             complement(22320..23084)
                     /locus_tag="SFZ84_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG8202208.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLSYKSNPFICVSSRNFLQDFL"
     gene            complement(23164..24432)
                     /locus_tag="SFZ84_000032"
     CDS             complement(23164..24432)
                     /locus_tag="SFZ84_000032"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG8202209.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(24547..25722)
                     /locus_tag="SFZ84_000033"
     CDS             complement(24547..25722)
                     /locus_tag="SFZ84_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8202210.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(25703..26539)
                     /locus_tag="SFZ84_000034"
     CDS             complement(25703..26539)
                     /locus_tag="SFZ84_000034"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG8202211.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLNADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(26541..28643)
                     /gene="topA"
                     /locus_tag="SFZ84_000035"
     CDS             complement(26541..28643)
                     /gene="topA"
                     /locus_tag="SFZ84_000035"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG8202212.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            28838..30109
                     /locus_tag="SFZ84_000036"
     CDS             28838..30109
                     /locus_tag="SFZ84_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8202213.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAIGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLADSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(30137..31402)
                     /gene="secY"
                     /locus_tag="SFZ84_000037"
     CDS             complement(30137..31402)
                     /gene="secY"
                     /locus_tag="SFZ84_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG8202214.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHILTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(31402..31794)
                     /locus_tag="SFZ84_000038"
     CDS             complement(31402..31794)
                     /locus_tag="SFZ84_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG8202215.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(31799..32242)
                     /gene="rpsE"
                     /locus_tag="SFZ84_000039"
     CDS             complement(31799..32242)
                     /gene="rpsE"
                     /locus_tag="SFZ84_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG8202216.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(32254..32610)
                     /locus_tag="SFZ84_000040"
     CDS             complement(32254..32610)
                     /locus_tag="SFZ84_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG8202217.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(32620..33156)
                     /gene="rplF"
                     /locus_tag="SFZ84_000041"
     CDS             complement(32620..33156)
                     /gene="rplF"
                     /locus_tag="SFZ84_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG8202218.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(33235..33630)
                     /gene="rpsH"
                     /locus_tag="SFZ84_000042"
     CDS             complement(33235..33630)
                     /gene="rpsH"
                     /locus_tag="SFZ84_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG8202219.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(33640..33825)
                     /locus_tag="SFZ84_000043"
     CDS             complement(33640..33825)
                     /locus_tag="SFZ84_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG8202220.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(33827..34372)
                     /gene="rplE"
                     /locus_tag="SFZ84_000044"
     CDS             complement(33827..34372)
                     /gene="rplE"
                     /locus_tag="SFZ84_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG8202221.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(34376..34609)
                     /locus_tag="SFZ84_000045"
     CDS             complement(34376..34609)
                     /locus_tag="SFZ84_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG8202222.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(34609..34977)
                     /gene="rplN"
                     /locus_tag="SFZ84_000046"
     CDS             complement(34609..34977)
                     /gene="rplN"
                     /locus_tag="SFZ84_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG8202223.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(34977..35228)
                     /gene="rpsQ"
                     /locus_tag="SFZ84_000047"
     CDS             complement(34977..35228)
                     /gene="rpsQ"
                     /locus_tag="SFZ84_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG8202224.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(35238..35423)
                     /gene="rpmC"
                     /locus_tag="SFZ84_000048"
     CDS             complement(35238..35423)
                     /gene="rpmC"
                     /locus_tag="SFZ84_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG8202225.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(35410..35835)
                     /gene="rplP"
                     /locus_tag="SFZ84_000049"
     CDS             complement(35410..35835)
                     /gene="rplP"
                     /locus_tag="SFZ84_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG8202226.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(35838..36539)
                     /gene="rpsC"
                     /locus_tag="SFZ84_000050"
     CDS             complement(35838..36539)
                     /gene="rpsC"
                     /locus_tag="SFZ84_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG8202227.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(36539..36964)
                     /gene="rplV"
                     /locus_tag="SFZ84_000051"
     CDS             complement(36539..36964)
                     /gene="rplV"
                     /locus_tag="SFZ84_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG8202228.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     VKAEVKAEEKKTVAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(36975..37256)
                     /gene="rpsS"
                     /locus_tag="SFZ84_000052"
     CDS             complement(36975..37256)
                     /gene="rpsS"
                     /locus_tag="SFZ84_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG8202229.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(37258..38088)
                     /gene="rplB"
                     /locus_tag="SFZ84_000053"
     CDS             complement(37258..38088)
                     /gene="rplB"
                     /locus_tag="SFZ84_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG8202230.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(38090..38371)
                     /locus_tag="SFZ84_000054"
     CDS             complement(38090..38371)
                     /locus_tag="SFZ84_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG8202231.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(38374..38988)
                     /gene="rplD"
                     /locus_tag="SFZ84_000055"
     CDS             complement(38374..38988)
                     /gene="rplD"
                     /locus_tag="SFZ84_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG8202232.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            complement(38985..39560)
                     /locus_tag="SFZ84_000056"
     CDS             complement(38985..39560)
                     /locus_tag="SFZ84_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG8202233.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(39570..39881)
                     /gene="rpsJ"
                     /locus_tag="SFZ84_000057"
     CDS             complement(39570..39881)
                     /gene="rpsJ"
                     /locus_tag="SFZ84_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG8202234.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(40080..40841)
                     /locus_tag="SFZ84_000058"
     CDS             complement(40080..40841)
                     /locus_tag="SFZ84_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG8202235.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(40877..42871)
                     /locus_tag="SFZ84_000059"
     CDS             complement(40877..42871)
                     /locus_tag="SFZ84_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG8202236.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(42840..43640)
                     /gene="rsmA"
                     /locus_tag="SFZ84_000060"
     CDS             complement(42840..43640)
                     /gene="rsmA"
                     /locus_tag="SFZ84_000060"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG8202237.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            43720..44256
                     /locus_tag="SFZ84_000061"
     CDS             43720..44256
                     /locus_tag="SFZ84_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG8202238.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            44280..45350
                     /gene="rlmN"
                     /locus_tag="SFZ84_000062"
     CDS             44280..45350
                     /gene="rlmN"
                     /locus_tag="SFZ84_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG8202239.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHLSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            45347..45445
                     /locus_tag="SFZ84_000063"
     CDS             45347..45445
                     /locus_tag="SFZ84_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202240.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(45459..45535)
                     /locus_tag="SFZ84_000064"
     tRNA            complement(45459..45535)
                     /locus_tag="SFZ84_000064"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(45499..45501),aa:Met,seq:cat)
     gene            45670..45757
                     /locus_tag="SFZ84_000065"
     tRNA            45670..45757
                     /locus_tag="SFZ84_000065"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:45704..45706,aa:Ser,seq:gga)
     gene            45804..45879
                     /locus_tag="SFZ84_000066"
     tRNA            45804..45879
                     /locus_tag="SFZ84_000066"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:45837..45839,aa:Ala,seq:ggc)
     gene            45883..45958
                     /locus_tag="SFZ84_000067"
     tRNA            45883..45958
                     /locus_tag="SFZ84_000067"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:45916..45918,aa:Val,seq:gac)
     gene            45986..46516
                     /locus_tag="SFZ84_000068"
     CDS             45986..46516
                     /locus_tag="SFZ84_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8202241.1"
                     /translation="MQNTIIQKAIHKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKVSLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(46496..47098)
                     /gene="leuD"
                     /locus_tag="SFZ84_000069"
     CDS             complement(46496..47098)
                     /gene="leuD"
                     /locus_tag="SFZ84_000069"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG8202242.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(47100..48512)
                     /gene="leuC"
                     /locus_tag="SFZ84_000070"
     CDS             complement(47100..48512)
                     /gene="leuC"
                     /locus_tag="SFZ84_000070"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG8202243.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGVKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(48499..49575)
                     /gene="leuB"
                     /locus_tag="SFZ84_000071"
     CDS             complement(48499..49575)
                     /gene="leuB"
                     /locus_tag="SFZ84_000071"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG8202244.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     TKSYLNTDEMGDCILEILKENNNG"
     gene            complement(49572..51107)
                     /gene="leuA"
                     /locus_tag="SFZ84_000072"
     CDS             complement(49572..51107)
                     /gene="leuA"
                     /locus_tag="SFZ84_000072"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG8202245.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLSINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENK
                     FILEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            51427..52056
                     /locus_tag="SFZ84_000073"
     CDS             51427..52056
                     /locus_tag="SFZ84_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202246.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(52092..>52244)
                     /locus_tag="SFZ84_000074"
     CDS             complement(52092..>52244)
                     /locus_tag="SFZ84_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEG8202247.1"
                     /translation="LTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYL
                     GYNYKF"
BASE COUNT        17090 a         9337 c         7508 g        18309 t
ORIGIN      
        1 ttaatatcat atcatagaaa gaatttcagc acgcccatta atcacggcaa cacaatgttc
       61 ataatgagcc gcattaagcc catcaatact tccagcatcc cattttccat tataatgctt
      121 tggtgttcca tctttttggc atatcatagg ctctatgcaa aacaccattc catttttaat
      181 tttagggcca ctttttgcac tcgcaccttt ttctaaatag tttaaaattt caggctctcc
      241 atggggcttt cgtcctatac catgcccgca atatccacga agcgggacaa aacctcttgc
      301 atggataaat tcgcctaaaa cagctgaaag ttccttaaaa cgtattccat cacgaataat
      361 atctatagca tgatataacg cgtctttagc acaagagatt aaagctttat cagcgggtga
      421 aacttctcct atagcaatag ttcttgctgc atccccataa tacccatcaa tcaaacttcc
      481 cacatcaaga cctaaaatat caccctcttt gataatttta tcatctggaa ttccatggat
      541 acaaacttga tttaaagatg tgcaaatggc acctggaaaa ccataaagtc ccttaaatga
      601 tggcttggcg ccaaggctta aaatataatc ttctgccatt ttatcgattt gttttaagct
      661 cattcctatt ttaatttcat tctctaaaaa atttaaagtt tttgctacaa tttgatttgc
      721 tattcttaat ttttctattt catctggttt tttcaattct atcattttat ttccttataa
      781 atttagccaa attttagcag tattttttaa agattcaaca tcgcttgaag cataaaaatg
      841 taattttgct ttatgatttt tcaaatctat attttctctt tctttaagaa attcaactat
      901 agcatctcct gaatgaatta attttgtttt atcaccaaaa tacttactta aagaacgacc
      961 tagtaaaggg aaatgagtgc aagcgagtat caaagcatct ggagttgtga tatttttaaa
     1021 ataatactcc atagcacttt gcaaaaaatc tccttcaaaa ataccttctt caaccatagg
     1081 cacaaaaagc cctgtagcta aagcatttat atttgtatat ccttgggata ataaacgctt
     1141 ttggtattct tctgatttaa tggttgcttt tgttgcaatg actaaaattt ctttattttt
     1201 atcatgcaaa gcttttatcg ttgcttcaac ccctgcatca attacaccat atactggaaa
     1261 atgtgctttt gtccttaaaa catctaaagc ataagcacta gcagtattac atgcaatgat
     1321 aagcatatca atttgaaatt gttcaaaaaa ttccaatgct tcaagacaga actttataat
     1381 agtatcttta tcttttactc cataaggaac tcttgcggta tctccataat agataatttc
     1441 atcaaaaagt ctagcttcat aaagagattt taaaacgcta agccccccta ccccgctatc
     1501 aaatacacct attttcactt taataccttc ttgctcctat ataacgagcc ttccaataag
     1561 aactatttag ctcgacttct tttactccac ctttagtaga taaatgtata aattttccct
     1621 tgctcatata aataccaaca tgcataccat ttggccctct acctgtctta aaaaatacca
     1681 aatctcctgt ttgcaatttt gatttagaaa cttttcttcc agaacctaat tgagtttttg
     1741 tagtgcgagg tatgcgtata ttaagctgag ctaatgcgct ctgtgtaaat cctgaacaat
     1801 cagcaccttt tttactagtt ccacctaaaa cataaggggt ttttttccat tcatttgcaa
     1861 taaccttgag ccttgcttct ttatttgtgt tgtaactagg atgatagttt agattctgat
     1921 aaaaactaca tccacttata aaaaatataa tcgtaataat aaaaaaaata tgcctcatca
     1981 atccccttaa gatcgagtag taaagaattt aagataaata aaaccccaaa tcccagaaca
     2041 aaatgaggct ataagaatag ctaagttatc tgcataatta aaaatatcac taacttcata
     2101 cgccaatcca tcaataaaca aactcattgt aaaaccaatt cctgtaagta tgcaaacccc
     2161 ataaagttgt ttcaaatttg aaccttgggg caaagctgca aatttaaagc ggattgccaa
     2221 ataagaaaat aaaaatacac ccacttgttt acctacaaaa agccctaaga aaatacctac
     2281 acttacacct gaaaaaattg ctcctatatc gatattggat aaatttactc cagcgttagc
     2341 aaaagcaaat aaaggtaaaa taataaaagc aatccaaaat tttaagcttt cataaatttc
     2401 ttctaaaaat gcttccccat ttttagtttg catcggtata aaaaatgctg ttatgattcc
     2461 agctaaagtt gcatgtactc cactttttaa aacactaatc caaagaataa ctgagcaaat
     2521 aaaataaaaa gactttcttg ttatccctaa aagatttaaa ataagcatta ccaaaatagc
     2581 aagtcctgca acgacaaaag caactattga taattttgtc gtataaaaaa tagctataat
     2641 taaaatagca cccacatcat caaaaatagc caaagaaagt aagaaaattt ttaaacttga
     2701 tggaatgtgc ttgccacaca tcattaaaat cgctaaggca aacgctgtat ctgtggctgt
     2761 aggtatagcc caacctttta aagtataagc atctcctata tttaccaaag caaacaacat
     2821 cgcaggtata agtatacccc ctaaagcagc cataaaaggt aaaacaatat ttttaggatt
     2881 tttaaaatcc ccgtgcaaaa attccttctt aagctcaagc cctatagcaa agaaaaatat
     2941 agatataagc ccatcattta tccaaagtaa aaaaggctta ttaagctcaa attcacctac
     3001 actaaatccg acttttaaat ttagaaattc tcgataatgt tcgctaaaag atccattttg
     3061 cacaagcaaa gcaagcaaag tacaaactat aagtaaaacg ccgccaaaag cctcatttaa
     3121 aactaaagtt tttaatttat gtactatatt attcatttaa caatcttaag ataaataaaa
     3181 ccaacaatgg cacttaaaaa actagctact aaaatagcaa gtttatccgc atattcaaaa
     3241 atatcactat ttttataagc caaaccatca ataaacaagc tcatcgtaaa accgatgcct
     3301 gttaaaatac atataccata aaattttcca tatttaatat tttcaggtaa ttttgcaagt
     3361 ttaagtttga tagcaataaa acaaaaagtg aaaacaccta attgttttcc taaaaatagt
     3421 cctaaaataa tcccaagact tacaggagaa aatactgaac caagatgcat atctctaata
     3481 tcaattccag cattggcaaa agcaaataaa ggtaaaataa aataaactac ccaaggattt
     3541 aaatccttaa gaacttcatg taaataaggt tttttatttt ttgtatcaag aggtataaac
     3601 aaagaaatga tcacaccagc caaagttgca tgtactccac ttttaagcat agctatccac
     3661 aacacaacac ctaccaacac gtacaaagaa agatgggtga tgtgataata atttaacaaa
     3721 agcagagcaa atatacaaaa caaacaaata ataattgcta aagctgaaag ctgatctgta
     3781 taaaacaaag caataataac aatagcaccc aaatcatcaa aaatagctaa agagagtaaa
     3841 aaaagtttta aacttgtagg aattttattt cccaaaagca ttaaaatacc cactgcaaaa
     3901 gctatatcag ttgctgtagg tattgcccaa cctttcatag caaaatcatg agaataatta
     3961 atagcaataa aaattaaagc cggagtaatc atacccccta aagctccgaa tataggtaaa
     4021 gatacagctc ttatattttt aagttgccca cgtaaaattt catattttaa ctcaagccct
     4081 atacatagaa aaaatatagc tatcaaacca tcatttatcc ataaatccaa cgactttgaa
     4141 atttgaaaat gatcaaatcc tactgtaaaa ttagcatgaa aaaaatctgt ataaatagca
     4201 cttaaagaag aatttttaca taataaagct aaaaatgtaa aaaatataag caaaatacca
     4261 gggaaagttt cacttaaaac catcttcttt atcatttgca tccttgctcc taagtaaata
     4321 tttgtaaaaa tttaatacga taaataaaat ggtaaaatta taacgaaaaa atactaaaga
     4381 aataattatt taaaaaaaca agcccaagat accaaaaagt tcttaagctt gttcttaaga
     4441 tatttaagcg taaatatcca aaccactaga gctagaagct tgtggagcgg aggcttgaga
     4501 gacaccttcc ataccttcga tgagttcatt catcaatgcc tcgtttgtgt ccatagattt
     4561 tttcaaaact gaagtattaa cagcagtcat taaattaaca ttacccatag aaacatctga
     4621 aaccatacat cctcctttta gattgagtct taagacttta tttaaatcgg atgatatttt
     4681 taaaacttaa tattttttac taaacttttt aaaatttttc aagggaacca atatctgaaa
     4741 ttaaaaatca taaatttttt aagataaaat cctattttaa aaatttttac actatgaaac
     4801 aataagcaaa atataaataa ttgatgcttt taaaagcgaa ttaaatggat aaaaatttat
     4861 ttcaataaat ttaagtttta tcttatttta tacaattttt aatataatct aaaattataa
     4921 ttttaaatga gaaatcagga gcttgctaat gttacttaac acgccttgca gggagatagt
     4981 agatacaaat tttgaaagca aaagaattag cataacttca actttaaaat ttcaagaaaa
     5041 aaagaaaaag tagaagctaa ggctgagaaa gaagaagcaa ataaagacaa tagcgattct
     5101 acaaacacaa ataccaataa aaaagataaa cttttggata tatctgctta gtctaaaata
     5161 tactatagct atatctcctt aaagaatacg caataaatga ttttttgatt tttattaagc
     5221 ttttaaaaca tcgaaaaaag gaaaaattaa aaaacacaaa aacaatatcc caaagtccat
     5281 agcttagaag aagaccttgc gatacttaaa aacaacccat attaaatcac aaaaataaaa
     5341 tatatttaaa tatttattaa aatacatttt ataatttaat aaaaaaatat tatcaatata
     5401 aaagcttatt ttttagttct atttaagatt tttagtatta tactagccat tatttatttt
     5461 gataataaat attattttta tcaaaaatca aggataatga taatgaaaat ttttaaaatt
     5521 gtatttttaa ttataagtat ttttttatca agctcagctt ttgctagggt agatgattat
     5581 attaatgaag caaatcttat caaagatatg ctaaaacaaa gcatagaaac ttataaaaag
     5641 ggcgataatc taggcgccaa aaagcttagc gaagatgcgt attttcaaca ttttgaaaat
     5701 atggaaggcc caataggaag aaacatagga agaaaagcta tcactatgga acgtaaattt
     5761 gtaaatttgc gtcgcatgta taaagatgaa gctcctttga cacaaattaa tgctttaatt
     5821 gatagtcttt attatgatct tgatgaagta gctccgattt tacaaaatgg atatcgttta
     5881 aaagcagaag caagcgatat aaactatgat aaggctaaag ctgaaaaatc aagcctagaa
     5941 gccaatgcca aacgcgaagc tgatgcagaa gctttaatcg cacaaatgat gggtgtggat
     6001 aaaaaagatt tagcacaaag ctctttaacc acccaagctc ctatacctat aaataatgat
     6061 acaagcaaac ttacagataa taatgcaagc gctgatttac aagctgccgc tgcaatggac
     6121 gcaagattgc aatttatact agataatatc tctaccaaat tttcacaggc agctaatgct
     6181 tttaaagaaa aaaactacca aactagtaaa gattttttaa atgatgcctt atttagtgat
     6241 tatcgcaata ccaaagtaga aattttagta aataaattta ccaaagcagg aaacgatcaa
     6301 aaaattcaac aagccatacg cacccttata cgccaaatca acgatgcaaa aatagatgaa
     6361 aaaggcttaa gagatggctt agataacata gaagaacaaa tttttgatgt tttcttgcaa
     6421 attccaaatt cagaactttc aagtttgcaa atttcaggct ttaatgatga aacaaaaggc
     6481 aaagattatg ccaaagtttc taatgatatc aaacttgctt tagatgaaat tttaaaaaat
     6541 tatgatggct ttagcacttc tatggtagat gatttacaag gaatttatct agatattttt
     6601 gaatcaagcg gtatggaaaa taaaatcggt gctgtagata gtggcttaaa acttaaaata
     6661 gaaagtttat tttccaaagg cgtggcactg attaaagcaa atgcagataa aaaagagctt
     6721 gaagctactt ttaatgactt agaacaactc atagccagca gcgtggataa aattcaagat
     6781 tctactcctt attcgttgtt tatatgggct ttaggtatta ttttgcgtga aggcttggaa
     6841 gctttgatta tcattgtagc cattgtttct tatcttgtgc aaagtggcaa caaaaatcgt
     6901 ctaaatatcg cctatagtgc tctttttaca ggagtgattt taagtttcat taccgctttt
     6961 ggagtttctt ggctatttaa agaaaatgca ggtcaaagta gagagcttat agaaggtatt
     7021 accatgctta tagccgtatt actactcttt tatgtgggct tttggctact ttcaaacgca
     7081 caaaataaaa aatggacaag ctttatcaaa caaggtgcta tagatgctat atcaaataat
     7141 agcgcaaaaa ccctttggat caccgtattt ttagctgttt atagagaagg tgcagaaact
     7201 gtgctttttt atcaagcctt gctttttgat gctaaaacaa gcactgattt tggtgctgtt
     7261 tttggcggac ttggacttgg aattttaata cttattgttt tatattttct tttaaaagca
     7321 ggagccattc gcatacctgt aaaacaattt ttctatatca cttcttacat tattttttac
     7381 atggtttttg tttttacagg caaaggcata gccgaactca tagaaggaaa agtcatcatt
     7441 cctagtctta tacctatgaa ttttgaaccg attttatggc ttggaattta tccttactat
     7501 gaaactttaa tccctcaatt tatagtttta attatgctaa ttattggcat tttaataaca
     7561 aaacaaattt caaaaaaagg agtaaaatca tgataaaaaa agttttatca gtagttgctg
     7621 cagctgcggt tattagtaca aatttatttg caggcgaagt gccaatcggc gatccaaaag
     7681 aacttaatgg catggaaata gccgctgttt atttacaacc tattgaaatg gagccaagag
     7741 gtattgattt agctgcatct ttagcagata ttcacctaga agctgacatt cacgcactta
     7801 aaaacaatcc aaatggtttt ccagaaggtt tttggatgcc ttatttaact atagcttatg
     7861 aacttaaaaa taccgacaca ggtgcaatta aacgtggaac tttgatgcct atggtggctg
     7921 atgatggtcc tcactatggt gcaaatattg ctatggaaaa agataaaaaa ggtggctttg
     7981 gcgtaggaaa ttatgaactt actttttata tctcaaatcc agaaaaacaa ggttttggac
     8041 gccatgttga tgaagaaaca ggtgtgggta agtggtttga accttttaaa gtagattata
     8101 aattcaaata cacaggcacg ccaaaataat tttacgctcg gattttccga gtgtttgaat
     8161 atttttattt ttatttttat ttgaaaaatt aaaataacaa tgtttaaaga gtaaattatg
     8221 agtatatatt ttgtgcattt tcttatcagt gttttaccgc taagtatttt aatggccttt
     8281 atcactccta ataaaaaata tatttttaaa agttttttag tagttttttt gggcttttta
     8341 tttggatatt ttgctttttt tatcgcagca caatttttaa aaaccgaaaa tttaatcttt
     8401 aattttgatt ttgtttttat aggtttattg ctagtaagct ttatatttta tttttggaaa
     8461 aaaattgaaa ttttaaattt tattttattg ggaattttaa gtttttgcac cgctttgcat
     8521 tattattttt taagtcaaga tttccctatt tttactagct ctttaatcga tagcgaaggt
     8581 ataagttctt taggttttat tgctttagcc ttgcttgttt gtattttgat tttcttcttt
     8641 ttaaaatggc aaaaaaattt taatcaaaaa acaagcttta tgctgttttt actgcttatc
     8701 cttatagaaa gcgataaagc tctagccaat atcttgctta ctttaatgcg aaattccatc
     8761 atagaaactc atgctttttt ggtgagtttt gtaggaaaaa gtaattattt tggtgttttt
     8821 ggaatttatg tttatttaat tttcatcact tttttggcat tcttaagctt aaaaattcgc
     8881 aaaaaaaata taagcaaaaa acaaatttta gatataaatt atcgcaaaaa cgaagctaaa
     8941 acaagtctta ttaatcgcta tttttccagt gttttcatct cttgtgttat aagtttttgc
     9001 attgttttat acttttttat ggtaagctct aagcctttaa ccatagatga gcctaaagaa
     9061 attttacccg ataagaatgg caaatttatc tttgatatag ctcttttaag ggacaacaaa
     9121 ctccaccgct ttgcttatat cagtgctgaa ggcaaagtga taaggttttt tcttatcaac
     9181 aaaagagaag atagggattc tcctgtagct gtttttgatg cttgtatgat ttgtggagat
     9241 atgggctata tcaaaaaaga tggacaactc atttgcattt cttgcaatgt gcgtattttc
     9301 ttacctagtg taggtaaaag cgggggttgt aatcctatcc cactcaaata cgaatacgat
     9361 ggtaaaaaaa tcaccataga tgttaaagat gtaatagcag gatctaatta ttttagtcaa
     9421 atcaaagaaa ttgaagtgca agatcctgta tcaaaaacaa aggttataaa cacccaagct
     9481 cctttttctt atagctataa agggattact tattattttt caaatcaaaa caactatgaa
     9541 gaatttaaaa aagatcctac aaaatatgta gaagaaaacg aagcccaatt tttaatccaa
     9601 aggagaaatg atgttggcta aaatgatttt taactctata tttaaaaaca aaattcaaaa
     9661 atttttagcc tttcttactt gttttttagc cacgcttttg ctctctacta tgctaaatat
     9721 taccctaagt ataggtgatg aagtaactaa acaactcaaa agctatggct ctaatatcct
     9781 tgttttaccc aaaggctcaa gccttagtat agaaataggt aatgaacttt atgaaccctt
     9841 aaaaaacaaa aactacctag aagaaaaaaa tttatatatg attaaagaca tttattggcg
     9901 taacaacatc accgcacttg ctcctttttt ggaaggtaaa atcacaattg aaaactccca
     9961 acaaaaagca cttatttatg gtacttattt tcaaaaagcc ataaaaatta aagatgatga
    10021 tgattttatc acaggtataa aaagtcttta tccttattta gcagtgcaag gagaatgggc
    10081 aaaagatgat agcaatgaaa tcatgctagg cgaagacttt gctaaaaaca ataaattaaa
    10141 attaggagat actatcaaac tcataggaga aaacaatcaa agcaaagaag caaaaatcgt
    10201 aggtattttg cttcatgcca atcctaaaat gtcaaataaa atcatcgctc ctttaaattt
    10261 agctcaagat ttactcaaca aacaaggatt ttactcaagt gcagaagtaa gagcttttac
    10321 catacctgaa tcagcccttt ctgaaaaagt gcgtcgcatg ggcgaagaaa aattagatca
    10381 gttagaatat gacaaatggt attgctcagc ctatgtaggc tcaatcgcta gtcaaattag
    10441 cgatggctta ccaggtgctg atgcaaaagc tctaaatgct ataagcgatg ctcaaagctt
    10501 ggtggttaaa aagatccaat ccttaatggg cattacttgc attatttgtc ttattgttgc
    10561 aagtattgcg atttcaagtc taatgagttc tgaaattcat cgtagaaaaa aagaaatagg
    10621 acttttaaaa gtacttggtg ctaatacttt tcaaatttat ctcatctttg ctggtgaaaa
    10681 tttaatcgta gctttatttg ctgctttatt tggatttatt tttggcacag cactttctca
    10741 aatcatcagc cttagtattt ttggatattt tattgatata gcctttatag ctttaccttt
    10801 aagctttatt tttgcaggac ttattgcctt actaggttgc ttgcttccta tcaaaaatat
    10861 cacacaactt tcagctgcag gagtgcttta tggtagataa gtttttcctt aatgagcttt
    10921 ttaaaagcat tagcttttct tatcaaagac tttttataat agttttaagt gtttttatag
    10981 gagcacttac ttgctcagct tttttaaata tttattttga tattgacacc aaactttcta
    11041 aagaattaaa agcttatgga gcaaatgtaa tgataagccc taaacaggat gaaaatttta
    11101 tctccaatgc tgagtatgaa aaaataaaag aaaatttaaa ggctagggct ttaactcctt
    11161 ttttgtatga ttttttaaat ttaggcagta caagcggagt ggttttaggc actgatttta
    11221 aggctttaaa aatcactaaa ccttttttag aagttaaaga aggaagcttt tctctaaatg
    11281 attttgatga aaattcagcc tttttagggg ttaatttagc caagcaacta ggcctaaaaa
    11341 caggtaatga acttcaaatt tacaatccaa acaatggaaa aagcataaaa cttaccataa
    11401 aaggcatact ttcaagcaat gatgaatttg atagcattgt tttagctcct ttaagcgtgg
    11461 tgcaaaattt aagcgataga gccggtatta actatgctaa tgctgtagtt tatggaaatt
    11521 ttgatgaagt taaagccaaa acacaagcaa tcagcaatga attcatcgat gcaaaaccta
    11581 tatcttcagt atccttaagt gaaggtttag tgcttggaaa aatcaaagct ttaatgtttt
    11641 taatcatact tgtagtattg atcatagtta ctactagcgt taatacaact ttaagttcta
    11701 ttgtattttc tcgcaaaaaa gaaatcgcac tgcgtttagc cttgggtgcg aaaaaaagtg
    11761 aaatttttaa actttttgct agtgaatgct ttatagtaag tttttttgct agtttaatcg
    11821 gagctttttg tgggatattt ttagccaatg tctttggtta tttgattttt aattctggta
    11881 ttgattttag atttatagct gtttttatag ccttaatcat ttctttgatt tttgcctttt
    11941 tggctgcatt ttttcctata aaaagagcat taaaaatcaa tgtgtgtgaa aatttgaaag
    12001 gtgaatgatg aaaaaagaac ttattaaaat aaacaactta aataaagaat ttggcaaagt
    12061 taaagcctta aacaatatca acttaagcgt ctatgaagga gaatggcttg ccatcatggg
    12121 tccatcagga agtggaaaat caacgctttt aaacatacta tcactcatgg atactccaag
    12181 ctctggagag tatatcttag acaatgaaaa cctagagcaa atggatgagg agcaaaaaat
    12241 caccttgcgt cgtgaaaaaa taggacttgt ctttcaacaa tttcatctta tcccctatct
    12301 taacgcttta gaaaatgtta tgctttctca gtattatcac tcaagcgtag atgaagaaga
    12361 tgccaaaatg gttcttgaaa aagtaggact ttcacataga ctcactcatt tacctagcca
    12421 attaagtggc ggggaacaac aaagagtttg tatagcaaga gctttgatca acaacccaga
    12481 gcttttactc gcagatgaac ccacaggaaa tttagatgaa gccaatgaac aaatcgttct
    12541 tcaaaccttg caaaaattaa aaaatgaagg caaaaccata gttttaatca cacacaatcc
    12601 tgatttagcc aaattcgcag atcgaaccct tatcttacaa catggggtgt taaaatgaaa
    12661 aaaagccttt taatcttaag cattttgttc ttgctcaatg cttgttcttt tgaaaattca
    12721 aaagatactg gaaaagttgg agaaaaaagc gctgaaattt cagctaaaga taccttagga
    12781 aaagctgtaa aacttgctga tgataataca agtttaaaag tcttagtctt ttttcaaaat
    12841 ggttgccctt cttgcttaaa agaactccct tctttagatg aattcataca aaatcacccc
    12901 aataaaatca gtgtttatgc tataaattcc atcgataatg ccaatgtggt taaggtttta
    12961 gccgaacaat ttgactttaa aaatgtaaaa gttttaaaag acgatcttaa aattaccaat
    13021 gatcgttacg ctgtgtttgc aacccctact accatcatca ttaaagatgg gatgataaaa
    13081 gatagaattt taggagaaaa accatgggaa tttttcgaat ccaagcttat ttctttgctt
    13141 taatcatagc tttatttttt gtagcttgtg atagtggaga aaattttaaa gctttaaata
    13201 gtgataaaac ctataatttt gcctacaatg gttttgaaaa aagcctaaaa ctaaatgata
    13261 aagcacaaaa ttttgcctta atatttttca caaaagattg tggagtttgt aaagaacaaa
    13321 ttcctatttt acagaatttg gctaaaaatt atgattttaa tatctttgtg gttttaggtg
    13381 atgcaaatga tgcaaatgat gcaaaagctt gggctgatga aaaaggttta tctaatttag
    13441 caatgtttta tgaaaaaaga gcagctaaat acctttcaag tgccattggg gaaatatatg
    13501 gagtgcctgt gcttagtttt ttcaaagaag gaaaaatgga tgaaaaattc ataggcttaa
    13561 ctccttatag catacttgaa aaagaaatca aaaaagtaaa aagctaagaa tttactttaa
    13621 agctttttat ctcctataaa atatccataa agctcatagc ttccatcttt tttcatcaaa
    13681 attacaggat atttttcact ataaccttgt tccattcctg ggcttccttg cggcatgcca
    13741 ggagctgaaa ttcctataac atctttaggt ttgttttcaa gcaaccatgc tatagcactt
    13801 tcaggaacat gcccttcaat agcatagcct tcgatcacac ccgtatggca accttgatac
    13861 tcatctttta tacccatttt ttctttgatt ttaagaaaat cattggtttt gtgaacacta
    13921 acctcataac ccttagcttt catataatca gcccaaagat cacaacagcc acaagtagga
    13981 ctttcataaa cttgtatttc cttagcttgc gtaagagtga gtaaaaaaag aatggttaaa
    14041 attatttttt tcataattgc tatcctaagt aaaaaatata taataatact tttataaagt
    14101 taataccatc acatttttaa cactaaaaat gaatttacaa aaatttaatc aagaaaaaga
    14161 tttttaatga gtgctgattt tgtctttacg gtaaagatat aaaagataaa acgatttaaa
    14221 aaactagaaa tttttaactt aaaaagctta aaatttagat atactttata cttactatgt
    14281 tttttcatag tatgttctaa tagtggattt ccactaagag tgaaaactca aggcggattt
    14341 ttatttgcaa tatttactta atagaataat tatgatcagc tgttcctcca cataaatacc
    14401 ccttcttatc aaaacttgca atttcgcaag aaagagtaga gagcttagct cttttaccat
    14461 cactagttaa tataagaact gtcttataat aaacatattt gcttttatct aaatattctt
    14521 tttgtattat agcttgagtt gaattatatt cttttggatc aacttttgca acaatatctg
    14581 cttcataaaa agttgccttt ttaaaaagtg gctgatctat aattggtttg atactctctt
    14641 ggaaatattt gttttgcatt tcgcttgctg aaactggaac taaatttttt tattaataac
    14701 tatcaaatct gcaaatgctg acacatttaa agcaactaaa gctgctaaag ctaatttttt
    14761 cattttaatc tccttgaatt gaattttgta tattttaatt atttttcaaa tcttttgcaa
    14821 gataattttt aaatttatct aaattaaatt tgcattttat ctaacaatca taagaaattt
    14881 taaaatgaaa taaaaattta tgagaaatca actcttgttt gaaaatgata aaagtaagtg
    14941 gtgcggatga aaggacttga accttcacgc attgctgcac cagatcctaa gtctggcgtg
    15001 tctgccaatt tcaccacatc cgcaaagtgg tacgcccaag aggattcgaa cctctgacct
    15061 acggcttaga aggccgttgc tctatccagc tgagctatga acgcatataa aatcttggtg
    15121 gtgcgcccga taggaatcga acccataacc tacagatccg aagtctgtcg ctctatccag
    15181 ttgagctacg agcgctagtg gggtgagtga tgggaattga acccacgacc ctcaggacca
    15241 caatctgatg ctctaaccga ctgagctaca ctcaccattt tgtataaatt tataaaaaat
    15301 ggtcggggtg aaaggattcg aaccttcggc cccttggtcc caaaccaagt gcgctaacca
    15361 gactgcgcta caccccgaat aaataaaagg aaatatttta tcacaaaata attttaaagt
    15421 caaggatttt catctcttag tcttaaaaaa actggaaagc gaggtaagga atttttggtc
    15481 aatccattaa atttataagt cacaatacta ccaatttttg gaggattttt tctatcttca
    15541 tcttttaaac cactgcctat tttaatgatt tgtccattag gcattttaca aagtaaggca
    15601 cctacttgat tttcaaattt acccttgccc ttgcgaaatc ctactaactc acactctgca
    15661 tcatcatagg gttttaattt catagcattt ttacttctgc ctttttcata aggacttaaa
    15721 tttttgcgta tgacaatacc ttcaccttga ttttttataa tgctttcgta aaattgattt
    15781 aaattatttt gattttcaac tggaatttga ggaataattt ttatataggc actaggatat
    15841 ttttgcaaat actcttctaa aacagccaaa cgatttttaa gagtacaagt agaaatttga
    15901 aattcttcgc aagcatttgg cacatcaaaa atattataag ttacttcctt ccataaggtc
    15961 aaattactat cgccactacg aattaaagct gaaatttcat caaatttatt tcttgctatc
    16021 caaagctcac catcaatagc aaaaggaggg aaattttttg taaaaaagtc aggagttttt
    16081 attttgtaat tttggcgagt ttttagatat ttcccatccc aaattccacg cactccatca
    16141 agtttttcgc tcatcaaata agcattaaaa tctttagagt taaaatcttg cttatcgaat
    16201 ttgctaagaa gtaaaatttc attagcaaaa actaaacaag cacaacatat taaaaaaaca
    16261 aacctcatca aagcagatta atcatatatc cagttgcatc tttttgaata ttataattat
    16321 aagttccatc aagatatatt acaagtcgat aatatccttt atgagatcca aagtctatgc
    16381 gtttaaaaat agaattgcta aggcgtatgt tttttgtagg gctaatcatt ttagatctaa
    16441 aatctataac gattttactt ggatttccta ctgaaaaatc tgtaatcatt tcatcactag
    16501 tgttaagttt tattttattt ttataaaccg cataagaaat aaaatcataa atctttgcaa
    16561 cctgtaaagg tatttcaaca ttggctgttg agtttgattc ttgtttggag ctattttttt
    16621 caggtatagt aactgaaaca tcgagtactt ttgaaggatc aggactttta aatcttgata
    16681 tagtataagt atcgtgccaa tcaatacttt tattgacatc taaatcgatc ttatcttcac
    16741 ttccgtctaa attgatataa ttaaaagtga tgctttttaa aattcttgca ctagaattaa
    16801 atttaacttc ctctttttga aattcaggtg gagcaaccaa ggttatattt tgatctgtct
    16861 taaaaggatt ttcatcagca tataaaagag aggtaaaaat aaaaaatatt gccaaaattc
    16921 tagttttcat ttgggtataa tccttttaat tcaaaataat ctttttgtgc tttagcattt
    16981 tgttctttga gcaaaataat ctttttatta agctcttctt tggtattttc taagcttaat
    17041 aaagtatcta aagaatactg cccaaaaaac atattgccaa aataaatcgc tccaattaca
    17101 acaagaaaag cccaaaaaat catttttata acatgggtat aaaaactttt ttttcttgtg
    17161 ctttcgtcgt attctttaag taaatcgctc agagcttttc tcctaagtat tcatcgcttt
    17221 caagttcaat ttcaagcaag cgattgtatt ttgcggttct ttcacctctt gctagggctc
    17281 ctgttttgat ttgtcctgta tttaaagcca cagcaaaatc cgctataaaa gcatcttcac
    17341 tttcgccgct tctatgactc atcacacatt tatagttatt tctttgcgct aaacgcacag
    17401 ttctcatagt ttgggtaata gttccgattt gatttggttt aataagcaca gcatttgcca
    17461 tttttttgat gatgccttct cttaaaatat cttcattagt tacaaacaaa tcatcgccta
    17521 caagctgaat tttattgccc aatttttcag taagcttaat ccaaccttca aagtcatttt
    17581 cagctaagcc atcttcgata ctgcaaattg gatattttgc acaaagttct acatagcgtt
    17641 cgatcaaatc ctcgcttgaa aaagccttgc cttccatgcg atatttgcca tctttgaaaa
    17701 attctgtact tgccacatca agagcgattt ttacacgatt ttcataacct gcttttttga
    17761 tacaagtcat taaaagatcg ataggttctg tgttgttagc taaatttgga gcaaaaccgc
    17821 cttcatcacc taaagccgta gaatgttcag aatttgcgag ttcttttttt aatatcgcat
    17881 aaatttcaca aactgaacgc aaagcttctt taaagctagt aaaaccaaaa ggcatgatca
    17941 taaattcttg aaaatctaca ttgttgtttg catgagcacc gccatttatg atattacaca
    18001 ttggcacggg taaaatgctc gcatttgcac cacctaagta gcgatataaa ggcattccca
    18061 aagcagctgc agccgcacga gctgttgcca tagatacgcc taaagtcgca tttgcaccta
    18121 aatttgagta attatttgtt ccatcaagct cacgcaaagt atcatcaagt tgagtttgat
    18181 taaaagcatc tagtcctaaa atttcatctg caatggtctc attgacattt gcaacagctt
    18241 ttaaaacgcc ttttccgcca aatctttcat cattatcacg caattctaag gcttcttttg
    18301 aacctgtact tgcaccactt ggaactatgg ccgcacctac acttccatcg cttagcgtaa
    18361 cttcggcttt tacggttgga tttcctctac tatcaagaac ttcataggct ctaacatctt
    18421 caattactaa cattattctt ctccttcgtc atcttcgcta ccgctgatca taccttctat
    18481 tcccatagaa ttttgaattg cttttgtgat ttcatctgca atttcagggt tttcttttaa
    18541 gaaagctttt gaattttctc taccttgtcc aagtttttta tctttataag aaaaccacgc
    18601 accactttta tctacgatat caagttttac accataatcg atcaattcac cttcacggct
    18661 taaaccctct ccaaacatca catcaaattc agcttgtctg aatggaggag caactttatt
    18721 tttaactact tttactttaa cgcggtttcc tataggttct tcgttttgtt ttaaggttgc
    18781 tacttttcta acatctaaac gcacagaagc atagaatttt aatgcatttc cacctgttgt
    18841 agtttcagga gtgccataac ccatagcacc gattttcata cgaatttggt tgataaaaat
    18901 tactgtggta ttcattttat gaactatacc tgtaagtttt cttagagctt gagacataag
    18961 tcttgcttga agtcctacat gttgatcgcc catatcgcct tcaatttctg cttttggagt
    19021 aagtgctgca acgctatcta ctacgataag atctactgcg ccacttcttg ctatagtttc
    19081 tacaatttct aaggcttgtt ctccaaaatc aggctgagaa acatacaaat catctgtatt
    19141 tacacccaaa tttttagcat attttacatc aagcgcatgt tctgcatcga taaaagcaca
    19201 aactccacct gctttttggc attctgcgat aatatgtaaa gttagagtgg ttttacctga
    19261 actttcaggt ccataaattt ctataattct tccttttgga acaccgccta tacctaaagc
    19321 aagatcaagc ccaactgaac ctgtgcctat gctatcgatt tgctcgactt ctttatcccc
    19381 tagtcttaaa atagtgcctt ttccaaaggt tttatctaaa ctttttaggg cagcgtctag
    19441 agattttctt ttattatcat ccataacttt ccttaaaaat tctaaatttt tagttagaat
    19501 tctaacaaaa taaaattaaa taatgattta ttttgctaga attaaagcaa agatttacaa
    19561 ggaagtatag atgaaaaaaa ttactattgc acattctcct gatgctgatg atatttttat
    19621 gtatatggca attaaatttg ggtggatagg gaatgatttt gcttatgaaa atacagcttt
    19681 agatatacaa actttaaatg aatttgcctt gaaaaatgaa tttgatgcta cggctatttc
    19741 ttttgggctt tatcctttaa tcgcttctga gtatgcactt ttacgcacag cagtgagttt
    19801 tggtgaaggt tatgggccaa aactcatcaa gaaaaaagac acgcatttaa aaagaaattt
    19861 taaagtcgct ttgagtggag caaataccac caatgctttg atttttcgca tgaaatatcc
    19921 tgaagcaaga attatttata agaatttttt agacattgaa aatgcggttt taagtggcga
    19981 agtagatgcg ggagttttga tccatgaaag cattttagat tttgatcaaa gtctttacgt
    20041 ggaagcagaa ctttgggata tatggcttga atttgctaaa gaaaatttgc ctttgccttt
    20101 aggtggaatg gctttgcgtc gttctttacc tttaagcgac gcgattaaga tcgaaagaga
    20161 tttaaccaat gctgtaaaaa ttgccgatgc aaatcgtaaa attttagccc ctatgcttat
    20221 ggaaagaaaa cttatccgtg ttgatgaaga aaaacttgat acttatctta atttatatgc
    20281 caataaaaac tctattagca tgaatcaaac tcaactttta gctgtagata cgctttttaa
    20341 actaggatat gattataaat tttatgataa aatcatacat gtaaatgatt atcttatccc
    20401 tagcgaatac gaagaagcta gaaattctta aaaaggataa aaatggacga aagtacctta
    20461 gttgctcttg gagtgcaaac ctttaaaatc acacttttac tttccttgcc tatgcttttg
    20521 gcaggactta ttgcagggct tgtgatcagt atttttcaag caactacaca gattaatgaa
    20581 atgacacttt cttttgttcc taaaatcatc ttggttgtag ttattttaat ctttttaatg
    20641 ccttggatga ctacaactat gattgatttt actgagaata tactaaatca aattccaact
    20701 tttatcaaat gatcattgat tttaaaaaat actcttctgt gtgtatagga aatgaatttg
    20761 aagttttagt tttggatcaa atttgtgatt ttgatggttt tttaataggt ggtgcaaata
    20821 accttttaat tagcccaaaa cctaaaaata taggaatttt aggagatggt tttgatttta
    20881 tacaaatttt agatcaaaat aaagatttta tacatcttcg cataggctgc aaaacaaaat
    20941 caagcaaaat atatcgcttt gctaaagaaa ataatcttaa gggttttgag tatttaagca
    21001 aaattcctgg cacacttggt ggtcttttga aaatgaatgc agggcttaaa ggagagtgta
    21061 tcagtcaaaa tttaatcaaa attgctactt ctcaaggcga aattctaaga gaaaatataa
    21121 attttgatta tcgtttttgt cctttaaata tgcctttttt ttgggctgaa tttaaactaa
    21181 attttggctt tgataccctt aaagatgaag ctttaaaaaa tgcaagaagc aaccaaccta
    21241 atggagcaag ctttggctct atctttaaaa atccaaaaaa cgactttgca ggacgtttaa
    21301 tcgaagctgt aggacttaaa ggatttaaca agggagatgc tatgttaagc gataaacacg
    21361 caaatttttt aatcaataaa aaaaatgcaa gttttgaaga tgcgtttttt cttatcgaat
    21421 tagctagaaa aaaagtcttt gaagaatttg gcataaactt agaaaatgaa gtgattatta
    21481 tctaaaaatt tttcaatata tctttaaatt aattgatagt taattttaat ttttttattt
    21541 cattatctat aacactagct aacatttttg gcatttgatt tacaatatct tgataatttt
    21601 gttttgcatc ttgatctttt aatgtcaaat ttaattctgc attttttgct acaagaattt
    21661 ttccattgct tgtagaaata attttaaaat taacattagc cacaccctct ttactagttg
    21721 tgataaaata atttgtaata tttacataaa aatcttgcaa atttaccacc acaacataat
    21781 ctgtaaattt agcatacatt ttagccttat ctttttcttg tgttaaaaaa ggacttacat
    21841 ttataagttt tgcatcctta gggctaaaat atgacaaagt tttaggactt tgataaatac
    21901 catttgcagc agaattaacc caattaagct ttaaactttg aatcaaattt ttagtaaata
    21961 atgtagaaaa ttccttatca ctcaccctaa aaccatctaa aaaataacca aaatttttcc
    22021 tagaagttaa tacaatagca aaatcaatat ccttatcttt ggtgatttgc gatttttttt
    22081 caattaaagt agaactatca aacaatgctt tttgttgatt taaatttgga tttgcaacat
    22141 tttgatttag atctattact tcaaagctat ctgcgctttt ttcaatttta ataacctttt
    22201 tctgagaaaa attattcgct aaaagattag aacttaaaac taaacttaaa aacaaaatga
    22261 aacaatacct catcttcatc cttataaact atttaaatat aaaaattata ctctttattt
    22321 tataaaaaat cttgtaaaaa attcctagat gaaacacaaa taaaaggatt ggatttataa
    22381 cttaaagggt tatataaaat gtatttttta gaaaaatcgc ccataaatcc tccattttga
    22441 ttaatcaaaa aatctcctgc tacaatatcc caaatattaa gcttttcaaa tcttttataa
    22501 actcctgccc tagcctctaa aatagcacaa aatttcaatc cagagcctat attaatagct
    22561 tctaattgat gctcttttgc aaagtcttca tcttctttgc taagatgatt aacactcaat
    22621 aaggctttat atttattttt ctcgtattct tgctggtcaa tttgcaaagg tttatcgttt
    22681 ttataaacct tggtttttgc atgagcatag aatatatcac cttttgatgg attttgtatg
    22741 agtgataaaa cagggcgatt gtcatgaacc aaacttatca taacgcaaaa ttcatcactg
    22801 ccttttaaaa aaccacttgt tccatcaaga ggatcgataa gccaaaaagt ttttaattct
    22861 tcacactctt ctttgctgag taatttttct tctgatagaa ttttaatatc cgtagaaccc
    22921 aaaatatcat ttagaatttt attagaagca agatctgctg atgtaagcgg gcttttatct
    22981 tctttttccc aagttttgaa attttttctc tcttctaaaa tagctttaga agcttgattg
    23041 ctagcattta tagcaatttc taaaaattta tcaagattaa gcatgattat aaactttcta
    23101 taagattttt taaaattata caagaagatt ttgtggaatt tttaatttcc acaaaaattt
    23161 taattaaatt ttactagttt cacccaaata aagttgtctt ggacggacta ttttaagact
    23221 ttcttgctct ttttgttcta tccactgagc tatccatcct ggggtgcgcc ctataacaaa
    23281 taaagtagca aacatttcat ttggaatacc taaggctttt aaaataagtc cactatgaaa
    23341 atcaacattc ggatataacc ctctttgaac aaaataatca tcgcttaaag caatctcttc
    23401 tatacgcgtt gctactttaa taagattggt atcaataccc aactcatcaa taagttgatc
    23461 acgaagtttt ttaagtactt ttgctctagg atcaaaattt ttataaaccc tatgcccaaa
    23521 gcccatcaag cggaaaggat cgtttttatc cttagctctt ttgatgaatt catctaccct
    23581 atcaacacta cctatttgct caagcattct aataacacct tcattagctc caccatgtgc
    23641 atgaccccaa agcgcaccaa tacctgctgc tatacaggca taaggatgag cgtgagttga
    23701 acccacagca cgaactgttg aagttgaagc attttgctca tgatctgcat gaagcataaa
    23761 aactgtatca agtgctttta cttctatagg tttaagctct acatgatcgt aaggataggt
    23821 tcttaacata tataagaaat tttctgtaaa accacgatct aaatttggat aagccatagg
    23881 aaagccgtgt ttatatctat aagcagtggc cactatagta gggattttag ctactattct
    23941 agctgccatt tccatatatt cttcttttac attcatgttt aaatgatcag gataaaaagc
    24001 actaagcgat gaaacagcac cttgtaaaac tgccatagga tgagcattat cagggaaaga
    24061 atcaaaaaga cgatgcatac cttcatggat aaaagaacgc tttttcattt cataacgaaa
    24121 tgcttcaaga cgcgtagcat caggtaattc tttataaagt aaaagatgaa ccacatctaa
    24181 ataaagtttg ttttcagcaa gccactctat aggatagcca cggtgcatta aaattccgtt
    24241 ttctccatca atataagtga tttttgattt acaagtagct gtagaagtta agccctcatc
    24301 ataagaaaac attcctgttt gtttataaaa acttgacata tctacaacgc ttggcccagt
    24361 tgtaccatca tatataggaa attcatagct ttttccattt ctattatcgg ttatagtaac
    24421 ggaatttgac attttcgctc cttttattgt tacttttatt aattctaaca aaaaagggcg
    24481 attatgagtt tttttattat taaattttta agattttgtt tgcttttttg agtaaaaaag
    24541 taactttcat tttttagaat tagaaagaaa tttgatcata ctcataacaa taatagcctc
    24601 aaacaacgct gttaaaataa gtgctgaata aagcttctca tcaataacct tgcccgaata
    24661 acccaaagta gctgttgcta taagcaaggt taaaggcata gaatgactaa gaccaaataa
    24721 aatcatattt ttaaaaccaa ttctttttaa aaaaacactt gcacataaaa ttcttaaacc
    24781 caccataaca aacataagta aaaatgcttg taaaacgatt ttataatcta aaatcatttt
    24841 aagatcaaag gttgaaccta tatggataaa aaaaataggg atcaaaaacc catgtccaaa
    24901 agtagaaagc ttatgctcaa gatctttttt atgatcaaaa aaagtagcta taaatgagcc
    24961 tgctataaaa gaaccaagaa cgatttcaag ttttgtaata accatagcaa caatgatcag
    25021 tataaaaatg gccatacaaa atcttatatc tttttcattt ttatcctccc atggcataag
    25081 cacaacttta agctgaggat accaccaaaa aagcacacca agcattttaa atccgagcaa
    25141 acaaagtccc aaaaagatat taagatataa aatactttgc gctacatcaa taatacctgt
    25201 tccttcgcgc aaaaaagctc ccgctatagt caaaagcaca atagaaatca cctcagctaa
    25261 agtagccact atcatagcaa tatttagcca ataacactct tttccaaaat ccttaaaaag
    25321 caaagataaa agccctacac tcatcacagg tataatgata acaaatacta aagaaagtcc
    25381 aaaaatccat actataagag aagataaagc gtaaagtaaa aaaatataaa aaaaactttt
    25441 tttggcgact tctttatcca tattaaaaaa ggctcttaaa tttacttcca tacctgctat
    25501 aaacattaga taataaaaac ctacatttgc taaaagtgca aaattttcac tttttcctat
    25561 gaaaccaaaa tatgctatta ttgcccctaa aataatttca gtagctgaaa gaggcaagcg
    25621 taaaattttt gcaatatgcg gagaaaaaag taagcataaa gctataacaa taagaatttt
    25681 tagatcaatt aaaccttgtg gatcaatgac actctgatgc aaaagtaaat cccatttctt
    25741 ttaattttat tatatcttga cttggttctt cacctttagt ggttaaataa tcccctataa
    25801 caatagcccc agcacctgct tgaaaaattt catactgcct ttctcgcaac accacttcac
    25861 gcccacctgc taccattacc acgctttgcg gtaaagcctc tttggtatca cgaacaattt
    25921 ttaaggcttc atcagcatta agtcttggaa cttgtagttt taaattttca tttgctataa
    25981 aaaaattaat aggcgttgaa aaaggctgta attcttgcaa agattttcta aaacttagtc
    26041 tatcttcttc actctcaccc ataccataaa ttccaccaca acaaagcata agtcctgctt
    26101 ctttagcatt taaattggtt tgaaatctac tttcccaagt atgagtggtg caaatttgtg
    26161 gaaaaaattc cttagaactt tcaagattgt gattataaga aaaaattcct gcttttttaa
    26221 gttctttgag ttgttccacg cttgccatac cattacaggc aattaaaagc aaattaggca
    26281 cttctttttg cacagcctta gcagcctcac aaacatactc aagcttttca tcatcaagcc
    26341 caagtcctgc tgtaaccaaa caaaaaccca aggcttcatt tttctttgcc attttcgctt
    26401 ctaaaacgat ttgtgaaagt tctttacgac gatatttttg aatatctgtt tttacatggg
    26461 cactttgggt gcagtattta cagtcttctg aacaatttcc actcgctata tttgaaatag
    26521 cacaaagcat gatttgcatt ctaatccttc atttcttttt tgattttgca ctttaagcat
    26581 tctaagaatg tacctttttt aagctctttt atcactaaag tttcgccaca ctcttcgcat
    26641 ttttcttcac ttggtttgta tttgcttata aaattgcatt ttggataagc actacaacca
    26701 taaaatttac cgcgttttga aaagcgttct acgatttcac ctttttgaca acttggacaa
    26761 gtaatgcctg taccattagc tttagctttt gcggctgtat tttcgctttc gtttttgctt
    26821 tcacttttta aatttcttga atacttgcat tttgggaaat ttaaacacgc tacaaattct
    26881 ccaaaacgcc cttttctaat agcaagctct ccgccacaat caggacaact ttcgcctagt
    26941 tttgtgacag ttttttgact agctattttt gtttttcctt cttcgatttt tctcataaaa
    27001 ggatagtaaa attcttttaa agtttcttgc caatctgcct tatcttctgc gatttcatct
    27061 agggtatttt caaggtttga agtaaattta ctatctacta tatcgctaaa atttttctca
    27121 agcacttcgg ttacattaaa agcaacatcg ctaggaatga gttgtttttt atctattgtt
    27181 acataatcac ggcttgtaag tatagaaatg gttggtgcat aagtagaagg gcgacctatg
    27241 cctaaacttt caagtttttt tacaagtcct gcttctgaat accttgaagg tggttcggta
    27301 aaatgtgagt tcatttctaa attttgcact tttaaatttt ggcctatttt aaaatttggc
    27361 aaaattttat ccttatccat atcaccataa actttataat atccatcaaa aaggattttt
    27421 ctaccgctta ttttaaaaac tgctctatca ttttttacaa atacattttg agtttgagag
    27481 atagcaggac tcatctgaca ggctaaaaag cgattgtaaa taagtgtgta aagttttaac
    27541 tcatctttgt ctaaaaattt agccgcaatt tctggagtaa aacttaaatt tgtagggcgt
    27601 atagcttcat gagcttcttg agcgccttta gtctttgtag tatatacatt tgctttgctt
    27661 ggaagatagt ctttgccaaa atttgcttgt atgaattttc ttgcattttc tactgcttct
    27721 ttggctaaat ttaaactatc ggttctcata taagtaataa cccccatcac gccttcatgg
    27781 gtatttactc cttcatagag cttttgagct atcatcatgg tttttttagg gttaaaacca
    27841 aggcgattgc tggcactttg ttgtaaagtt gaagtcataa aaggaggagg cggagcgatt
    27901 tttctttctt tgctttcaat gtcacttata ctataaactt catttttaca agcttctagt
    27961 ataagtttag cacgatcttt gttggtaatg gtaagttttt ctatcttggc tttatcaaac
    28021 tcaactagtt ctgcatctaa atctttttga aaaatcatat caatactaaa gtattctagg
    28081 ggtacaaagg cacgaatttc tttttcacga tcgactatga tctttaaagc cgcactttga
    28141 acacgcccag cactaagtcc tctttgaatt ttttgtccta ataaagggct gagcttatac
    28201 cctacaatgc gatctaaaag acgtctggtt tgctgagcat ttacagagtg catgtttaat
    28261 tttcttggat tttttaaagc attttctata gcgcttttag tgatttcatg aaaaacaatg
    28321 cgtggtaagg tgttttcatc ttttcctata gcttttgcaa tatgataggc tatagcctct
    28381 ccttctctat cttcatccgt tgcaagatag acttctttgg catctttggc tttgctttta
    28441 agttctttaa ctaaggcgct atgatcactt gtgattctat actcagggat aaattcatca
    28501 tcttctattt taatcccaaa gcttgattta ggcaaatctc taatatgtcc tttagaagcg
    28561 ataacttcat aatcttttcc caaaaaattt cctatggttt tagcttttgc aggagattct
    28621 actatgatta aatttttctt cattttgcac ccttgttaaa taaaaagctg aatttagcta
    28681 aaaatattta aaattctact tataaaatat attttaatca agctaaaata ttttaaaaac
    28741 aaaactatca taacaaaata aataaaatat aattttaagt aattttaaat acaaaccata
    28801 atttttggag tataataaaa taaaaaaggt aaaaattatg aatgacaaaa cttataaatt
    28861 tcatccaaat gacacaaaaa tggataaaaa aataattcaa attactgaaa agtccggatt
    28921 taaagcagct gtgttttcta tggctgctat gactatgcta ggaagcgtgg tcatttcatc
    28981 tgctctgcct gctatcaaca gacattttga agaactttta acccaaagtg gcgctactct
    29041 tgcttcaagt ttcacattag ctcatcttga tatacttgtt cgcttagttt taaccatccc
    29101 tgctattttt gttgtcattt tatctccatt tgctggtatt ttaatggata aatttggcaa
    29161 attaaaattc attcttccag ctatggtggt ttggactatt tctgggataa gtggcttttt
    29221 cttaaatgat atttatgcta tactgacttc aagagctatt tttggtatgg caactgcttt
    29281 tataatgaca ggcgcttcgg ctttgcttgg ggattattat agtcgtggtg gctttaatcg
    29341 cagagaaaat gctttaagcc ttcaaggatt tttttgtgcg atagggggtg ctgtttttat
    29401 ttctattgcg ggatttgttt caagttattc ttggcgttat ccttttttgg tatatggact
    29461 tggaatttta attaccttaa tggctatcat ttatcttttt gaacctagaa aatttaaatt
    29521 ctataatcat acaaaaatag aaacaaaaac aaattattgg caatttttcc ctatctattt
    29581 tataggtttt tttatcatgg tagtttatta tatttcgcca actcaacttc cttactatat
    29641 agaagaacat ttgggattgg atcctaaata tataggtatt tcgatgtctg tatctgcact
    29701 atgttatggt tttttctctc taagctatag atatattata aaattcttaa gtattaaaac
    29761 tatctatgtt ttaactcttt ttatcgtatc ttgttctttt ttgctgcttt ttttagcaga
    29821 tagctttttc acagttttaa tcgctttagc tttgcttgga atgggtggag gtattatgct
    29881 tgtaaataat acggcttatc ttttttcaat ctgtcctgaa aatgctcgct ctagggctta
    29941 tggaatttta gcaagttgta tatttttagg acaattttta agtcctatta tctctcaacc
    30001 tatcgttaga caaatgggtc ttgtagatgc ttttttaata tggtcaatag taatttttat
    30061 agtgtgcatt gtgtttttat ttttaaagca aaaacctaga ataaattagc aagaaaaatc
    30121 ttgctaattt tatttattac aaacctaccg cacttaaagt ttggtattta ctcatataaa
    30181 tttgagcttc aatttttctc atcgtatcaa gtgctacttg aactacaata agtacagaag
    30241 taccgccaaa atgaaaaggt acacccataa atttcaccaa aacccaaggt aaggttgcaa
    30301 caagccctaa ataaatagaa cctgataaag ttaaacgaga agccacttcg ttaagataac
    30361 ttgaagttcc ttcacctgga cgaattccag ggataaaacc gccttgtttt ttcaaatttt
    30421 ctgctatgtc tttagcgtta aatacgatag aagcataaaa ataagcaaag aaaattacaa
    30481 acaagaaagt tagaatatga aacaaataac catttggatt taaaaagtca ttaatggctt
    30541 gtagataagg atttgtacta gtttgtaaaa ttgttgttgg aaacatcaaa atcgcactag
    30601 caaaaatcgg tggaataacc ccactaagat tgagtttaat aggaatataa ttcataatgc
    30661 gtttgttttg attttgcatt acaactttac gagaataaga aataggaatt cttctttctc
    30721 caagttctat ataaataatc acccctatgg tgattaaaat caaagcaaaa attgcaaaag
    30781 cggttaagaa attcatctcg cctgaattga tttgtcctac agttcctgaa atcgctcttg
    30841 gaatacctga aacaatacct gcaaaaatga ttaaagaaat accatttcct atacctcttt
    30901 gtgtgatttg ttcgccaagc cacattaaaa gcatagttcc agcaagcata gaaatagcac
    30961 aaagtgcgat aaacatattt aaatcttcca ccattatagc ccctgcacca ccacgaccgt
    31021 gcaagctttg caaacctata gcaacgccta tactttgaac caaagtaatc acaatagtcg
    31081 cataacggat aatttgcata tatttttgca tactatcacg ctcttttttc atcttaccaa
    31141 tatttggaaa agttgctgca agaagctcca taataataga agcagtgata taaggcataa
    31201 tacctaaaga aatgatagaa aagcgttcag ccgctccacc actaaaaaca ttaaataaac
    31261 ccaaagcatt gttttgattg ttattaaaaa attccgcaat cacatcagca ttgacgccag
    31321 gaactggcac ataagccaga accctataag caaataaaaa tgctaaggtg attaaaatct
    31381 tattcgtcaa tgctctattc attattttga tccggtgacg ctaatattct cgtctttgat
    31441 ttttgatact aagtcttttg cacttgcacc aattaatttg attttattca cagattttga
    31501 aattttgtga acacttttaa tgctctcaaa tgtaatttca ctaagctctt ttacagctgt
    31561 gattttttca acattgatca cataaggttt ttgaatttta gaagtaaaac ctacttttgg
    31621 tagtcttctt tgaagtggtt gttgaccccc ttcaaaacct cttttttcat tataaccttt
    31681 tctagcagtt tgacctttac cccctttagt agcagtctta cccatgccag aaccttgacc
    31741 acggccaatt cttttagttt tatgcgttga acccgctgct tttgttaaat tcatcttctt
    31801 atccttttaa cattgttaaa gctttgattg tagcacgaac cacattagct gaattatttg
    31861 aacccaaaga cttggttaag atgtctttaa tacctgcaag ttccacgata gggcgtgtag
    31921 aaccacctgc aataactcct gtaccttcac tagctggttt aagtaaaatt ctacttgcgt
    31981 tatattttac ctctacatcg tgagcgatag ttgagccttt agttttaact tcaacgatat
    32041 ttttaaacgc atcgtcaaca gctttacgga tggcatctgg aacttcctta gccttaccat
    32101 aaccaacacc tactaaacct ttgcggtttc caacgataac taaagcagta aatctaaatc
    32161 ttctaccacc tttaacaacc ttagtaactc tgccgatatc gacgattact tcttcaaatt
    32221 cttctctatt atatttttcc atcgatttac cccttatagc ctaatgccat tttctcttaa
    32281 agattcagcc aatgctgcga taacaccatg atatacataa ccatttctat caaaaacagc
    32341 ttgttctatc tttttagctt ttaaagtttt agcaaattca gcagcgattt ttttagcacc
    32401 ttctttattt gctttaacgc caagtttgcg tccatcaact gctgctaaag ttacagcttt
    32461 tacatcatca atcgcttgga tatatagagt tctgtttgat ttaaatacag aaattcttgg
    32521 aaaattttca caacctgaaa ttttcgctct aattcttttt tttcttttga ttcttaaagt
    32581 tagttttctt tttaatacat ttgctctcat attctaccct tacttcttag atgtcttacc
    32641 agctttgcgg ataatgcgtt catcagaata cttaacgcct tttcctttat atggctctgg
    32701 tggtctaaat tcacgaattt gagcagcaac ttgacctaca acttgtttat cacttccttt
    32761 aactgcaata gtatttttat ccactacaat ttcaattcct tctggaatat cataattaat
    32821 aggatgggaa aaaccaaggc ttagttctaa aactttacct tttaaagctg ctttataacc
    32881 aactccattg atttcaagag tttttgaaaa accttgagtt aaacctacaa cgatattgta
    32941 agctaaagct ctgtaagttc cccaataagc tctactttgt ctgtcttcac cttttggaga
    33001 aaaaagaata ttattatctt taatctcaac atttacattt gctttagtat caagttcttt
    33061 tgctaaattt ccttttttaa atttaagcaa atttccttct aattttactt ctactcctgc
    33121 tggaatagca atcggttgtt tacctatacg agacatattt ttccttttta tttgtctagg
    33181 atatttctac ttttttaaaa gaatggatac ccaatgccat aaaaagcaga ttttttacca
    33241 aatggtacat aaaatttcgc cgccaacacc tgctttataa gcttcatcat tagctaaaac
    33301 gccatgactt gtgctaacta cgatagtacc ataaccattt ttaaaacgct tgatttcatc
    33361 tttaccttta taaacacgac gaccaggctt agaaattctt ttaagctcat tgataacact
    33421 cttacctttt tcatcgtatt ttaaaactac attgataaat ttctttttat cttcttcaat
    33481 aacattaaaa ctctcaatat agcccttagc ttgaaaaatt ccaactaaag cttctacaac
    33541 tttagaatgt aaaagcttgg ttgtttcaag ctttctcatt cctgcatttc tgatacgagt
    33601 gagtgaatct gaaataatat catttatcat attttatcct taccaacttg ctttcttaag
    33661 acctggaatc aaaccttcgt tgcccatttt tcttaagcaa actctgcaaa ttccaaaatc
    33721 tctataaacc gaatgcggac gcccacaaat ttggcatctt gtataagctc taactttaaa
    33781 tttaggcttg cgtgccgctt ttgcaatcat tgatttttta gccatcttac tttccttttg
    33841 taaatggcac accgataagt tctaataact tttgtgcctg tttgtcattt tgtgctgttg
    33901 taactataga aatgttcata ccatgagttc ttaaaatttt atcatactcc acttctggga
    33961 acatcaactg ctcatcaaga ccgaagttat agtttccgcg tccatcaaaa ccatctctac
    34021 ttaaacctct aaagtctttc acccttggca aagcaataga aattaattta tcaagaaaag
    34081 catacatatt ttcttttctt aaagttacca ttacacccac aggaaaacct tcgcgaactt
    34141 taaatcctgc aactgatttt ttagctttag taatcacagc cttttgtcct gcaattaaag
    34201 aaatagtatc tgcaacattt tgcaatactt tttgatcttt agccaactca ccagcaccta
    34261 cgctgataac tactttttcg atcacaggga taagcatagg atttttaata tcaaattctt
    34321 taaccaatgc aggtttaatg ctttgattat atttttcttt taatctcatc atcgcttact
    34381 cctgaacttt tgccacattg gaaatatcca ttggcatttc tttattgata aaaccaccat
    34441 ttgggttttt ctcactcggc ttaatagctt ttttagcgat tttacatcct tcaactacca
    34501 ctttaagtgt ttttggatat accgctaaaa ctttacctgt tttaccttta tcatcgcctg
    34561 tgataacctt aacgctatca ccttttttga tttttaattt aaccgccatt ataatacctc
    34621 cggtgctagt gaaacgattt tcataaagcc accatatcta acttctctgc ccactggccc
    34681 aaagatacga gttccgatag gctctctttt gttgtcaaga ataaccgcag cattttcatc
    34741 aaaacgaatc aaagaaccat tatctctatg aatttctttt ttagttctaa cgataaccgc
    34801 ttttaccact tgaccttttt taacttttcc atttggtaaa gcttttttaa cagatgcaac
    34861 gattacatca cctacggtag cgtatcttct tttgctaccc cctaaaacct tgatacacat
    34921 taattctttt gcaccgctat tatcagcaac tgcaagtctt gtaaaacttt gaatcattac
    34981 tcaactcctg tagctaatac agattttaag cgaaatgatt ttctttttga aagtggtctg
    35041 cattctactg caacaacagt atcacccact ttaacttcat ttctctcatc atgaattaga
    35101 tattttttaa agcgtttaac aatttttcta tatcttggat gaaccacttt tctttcaacc
    35161 aaaacacttg cggttttttc accagcgatt ttaacaacaa cgccttgaat ttctctttta
    35221 aatgccattt tctatcctta tcttaaagcg ttaattgctg tatttattct agcaatgtct
    35281 ttttttactt ggctaatctc ttttggatta gtaagttgca ttgtttttag cttttgtttt
    35341 aaagtgaata aaagcacctt tttttctttt agcattgttg caagctcagc tgctgtttta
    35401 tctttaatct cagtatattt cattttggct ctctcttgta acaaacttag ttttaaatgg
    35461 aagtttatgc atagctaaag tcaatgcttc tcttgccatt tcttcgctta ctcctgccat
    35521 ttcataaatg atacgacctg gcttgatatt cattacccat tcctcaacag cacctttacc
    35581 tttacccata cgagtttcta aaggtttttt tgtcaaaggc ttatctggaa aaactctaat
    35641 ccaagttttt ccttgtcttt taacaaaacg agttaaagcg atacgcgctg cttcgatttg
    35701 gcgtgagtta atgcgtcctg cttcagttgc ttttaatgca aattcaccaa aagtaaattc
    35761 tgttccacga ttagcataac ctctgttacg ccctttcatc attttgcgat atttagttct
    35821 ttttggcatt aacatgatta tttacccctt cttgtgcgtc ttggcttttt agctggagca
    35881 ctttcttcag ttttttcagg ttgcatacct ttgtgcaata cttcaccttt aaagatccat
    35941 actttaactc ctatgtttcc ataagtagtt ctagcttctg caaaaccata atcgattttt
    36001 gctcttaaag tatgaagtgg aacgcgtcct tcaagatacc attctgttct tgccatttca
    36061 gcaccaccta aacgaccgga aactgaaact ttaattcctt tagcacctgc tttttgcgca
    36121 ccttggatta cttttttcat tgctcttcta aaagcaattc ttttttcaag ttgagttgca
    36181 acactttcag cagcaagttg agctgaagct cctgcttttc tttcttcttt gatattgata
    36241 tttacatctt taccgattaa atcttgcaat tcttttctta aattatcaac atcactacct
    36301 tttttaccga tgatgatacc tggtcttgca gcaactacag taacgcgaag ttttttagca
    36361 gttctttcta ctaaaatttg gctaattcct gcgtaataaa gttttctttt taagaaagct
    36421 ctgattttgt aatcttcacc gatattttct actaaatttg ctttagttgg aaaccatctt
    36481 gattcccagt ttctattgat tcctagtctt agaccaattg gattaacttt ttgtcccatt
    36541 agctttcctt tttcgctgtt gcttttttag tgcttgttgt ttttttagct ggagcttttg
    36601 ttgtagtagt ttttttagct actgtttttt tctcttcagc tttcacttcc gcttttacca
    36661 cttctactaa aatatgtgaa gttggttttc taatacgact tgcacttcct ctagctcttg
    36721 gtctaaatct ttttaatacc gcagctgcgt caacacgaca actttttaca atcacttcgt
    36781 ttgcttcaaa gccaccattt gctactgcac ttgaaattgc atttgcgata tattttgcac
    36841 ctttatttgg cataaatttt aaactagcca tagctaattc tgcattcatc ccctgaactt
    36901 ctctagcaat caatcttgct ttagttggag ataatcttat gaatttaatt aatgctttac
    36961 tcatatctta tcccttactt accaattttc ttttgcacag agcctttatg ccctttaaat
    37021 gtgcgtgttg gagcaaattc accaagttta taaccgatgt gattttcagt aatataaact
    37081 ggaataaagc ttttaccatt atgaacatta aatgtaagtc ctatcatatc aggagtaatt
    37141 gtgcttcttc ttgaccaagt tttaattggt ttattatcat tagccttttt agcagcgatg
    37201 acttttttca ttacatgatc atcaacaaaa ggaccttttt ttagtgatct agccatctta
    37261 ctttcctttt cttcttgaaa ttattagctt atcgctagcc tttttacgac gagttttcgc
    37321 acctttggtt ggtttacccc acggagttac tggatgacgg cctgaatttt tcttaccttc
    37381 acccccaccg tgcgggtgat ctactgggtt cattgcagaa ccacgagttt gcgggcggat
    37441 acctctatgg cgatttctac ctgctttacc gatagttaca ttagcccatt cttcatttcc
    37501 aacttcgccg atacttgcca tacattcagc taaaacttgt ctcatttcgc cacttgcaag
    37561 tcttaaaata acatattttt cttctttacc cataagttgt gcataagcac ccgcagaacg
    37621 aatcatttga ccgcctttac ctggttttaa ctcaacatta tgaacaatag tacccacagg
    37681 aatgttttta agtttcattg cattgcctgg tttaatatca agtccgcttt cagcagctga
    37741 aactatatca ccaacgctta atccacgtgg ttgaagaata tatctttttt ccccatcttt
    37801 ataagcaatc aaagcaattc tacaatttct atatggatca tactcgattg cttctacttt
    37861 gccttctata ccgaatttac gacgtttaaa atcaataatt ctgtaaagtt ttttagcacc
    37921 cgcttcttta tgacgacttg taattcttcc atagctgtta cgacccgcgt gtgctggaag
    37981 tttaacaagt agtgagcgta cacttggttt agctgtaata tcttcagaac ttaaacctgt
    38041 gatatatctt ctacttggag tatatggttt ataagtttta attgccatct taagcctccg
    38101 tattttctaa gctaacacct tcaggtagct taacatagaa ttttttgtaa ttgtttcttt
    38161 gacctaaacg acctctaaaa cgcttaattt ttccatccat tcttaaggaa ttgatgcttt
    38221 ttggagttac accaaaatac tcttttaaaa ccgcttttaa gcctgtttta gtcatttttg
    38281 gcgaagtttg aataactacg acaccttgct cttgcaaatt caaacttttt tctgtgtaaa
    38341 gtatagtctt tatatcagta atatctgcca taattatccc tcttttgtaa tagattctaa
    38401 cgctgatttt tccataataa cagcattaaa tacagatact aaataagcat ttacttcagt
    38461 tacatcaact acatagcaat ttgctaaatt tctgtaagct aaaagtgttt tttcatctag
    38521 taaatcttta acgattaaag catctttgac gccaagtttt ttaatcacag cgtttgcatc
    38581 ttttgtttta ccactttcaa tagccaaaga atcagcagta aataacacac ctttagctgc
    38641 tttatctgct aaagctcttt caagcgccaa tcttttttgt tttttattta ctttttggaa
    38701 gtagtttctt tcatttgttg gaccaaaagc aaccgcaccg cctacccaaa cgttagttct
    38761 tgttgaaccc gctctagcac cgccacgacc tttttgtctc caaggttttt taccaccacc
    38821 acttacatca cttctacctt tagtatgagc tgtatttgct cttaaacttg caaggtaaga
    38881 ttttacatac aagtaaagat tgtgtggatt tacttccgca tattttgaag gtaaatcaag
    38941 ttcacctgct ttttctaatt tatcatttaa aacaactact ttactcattt tgcaatcctt
    39001 attttaccca tagcaccatt ataacctggt actgcacctt taactactaa aattttattt
    39061 tcagcatcat aagatacaac ttcgttttta acggtcactt tagtatttcc atagtgtcct
    39121 gccattttca tacctggttg aacacgacct ggccattctc tattaccaat agatccatgg
    39181 cgtctgtgaa atctagaacc gtgacttgct ggaccccctg cgaagttatg tctcttcata
    39241 acaccgctat aacctctacc tttagtgtta aagcttactt ttaaaatttt tgcttcattt
    39301 aatggagttt catctaaatc tcctgcttca gtatttgcta cttctaaagt cgcaaatcta
    39361 ttgtattctg cagaaagatt gtattttttt tgttgtcctg cgacacattt attacttgct
    39421 ttaccttttg gatatgctac taaagccttt ccgccttcaa cttcacatac ttttgcattt
    39481 acaactctta gtaaagttac agcgatactt ggattagtaa ttgttctgct cattccaatt
    39541 ttttctacaa tatattccat atcttatcct tacttaccca tagctcttac ttcaacgctt
    39601 acttctggcg ctaaatcaag cttcgttaaa gaatcaactg tatctggagt cgctgctact
    39661 atatctagca tacgcgcgtg aattcttatt tcaaactgct cacgagaatc tttgttaatg
    39721 tgtggagatt ttaaaactgt atagcgtttg attttagtag gcattggtat cggacctcta
    39781 atatccgcac ctgttctttt aacagcttct acgattgctg caactgttct gtctagtact
    39841 cgatggtcat aagcttttag cttaagccta attctttcca taatatttcc tttaaaaaga
    39901 actcgttagt taaaaactaa ccaattttat aaaaattgaa atgagagtat ataaaatctt
    39961 gttttcaaag tcaaggaatt tgatgaaatt tttctattat tttcctttta aaaaggataa
    40021 aaatagaatt tttagaattt aaaaattatc attatttttt aaatttttgt atataatggt
    40081 caatatctta tttcattaaa ttttaaaaaa tctcttaatt tttcatattc gccattttct
    40141 aaataacgat gttttcccgc cttcaacata ccaagatcta aagccccaaa agcaacacgc
    40201 ttaagatcca tgacttcaag atcaaaatgt ccaaaaaagc gtctaagctc tctattttta
    40261 ccttcattta taaccactct aagcttagta tagcctccac ttgatccaaa aatttcaaag
    40321 tctataaaag gagcaaaact catagaggta attttagttt ttgcatgtgc gccttttttt
    40381 tcatttttaa tctcaagtcc attttgcatg gcttcgatga cttgtttgct caccgtgcct
    40441 ttaactttaa ggtagtattc tctttctaaa tcgctatgca ttaaagcatc ggcaatcaca
    40501 ggagaatctg taagcaaaag taagccttca cttgcataat ccagcctacc tacgctaagc
    40561 caagtactaa attgtcttgg caaggtatca tatatagttt ttcttccacg atcgtctttt
    40621 ttactgacaa tttcaccttt ttgtttatgg tagattatca cgctaaattg cgttcttttt
    40681 tgtactcttt tacctttaac aaaaacttta tcatcaaatt taacttcatc gcttaaaagg
    40741 gcaattttgt tgtttatttt tactaagcct tgtttgataa gttcatcggc ttcacggcgt
    40801 gaatagcggg tgttatggga tataaattta ttaattctca tttgatcttc cttaaaaagg
    40861 gcgtttttgc ccttttttac attacaaaaa tagttggaac tatggttggg tattttttaa
    40921 tctttctaaa gatgtgtttt cttaaaactt ggcggatttg attttctaaa aatcttggat
    40981 cattgagtac ttcatcttta acattgatga aaaattgtcc taaaacttca gccatatctt
    41041 tgctaaaagc atgatcgtgt ttgtcagcta ctagcccata gctaaatact cttggtttgt
    41101 tgatcagtgt ttttgtagct ttgtcaattt gtgcgataat aactactata ccactatctg
    41161 caagtttttg acgatctata actacatcat cggcgatttg tttattgatt tgattatcta
    41221 caaaaacttt acctgttttt acggttttta tgcgtttgac atatttttgg caaagttcta
    41281 cttgatcgcc atcactcata agataaatat ttctttcagg gataccgcac ttcatcgctg
    41341 tttctttgtg tttggtgatg tgattgtatt ctccatgaac tggtaggaaa aatttaggct
    41401 tagtaagggt tagcataagc ttttgctctt ctatactagc gtgtccgctt acatgaattt
    41461 cactaaattc ttgatacgct actttagctc ctgcttttaa aagatagtca agcaccgcag
    41521 aaacacttgc ttcatttcct ggtatggctt tagctgaaat aatcacttga tctgtaggtt
    41581 tgatttttat aaatttatgc tcatcagttg ccattctata aagcgcactc atggtttcgc
    41641 cttgacttcc tgtagttacg ataagcactt cattgtcttt atatttgctt acttcatcag
    41701 catcgatgaa aatttttcta tcaagtttga tgtagcctaa ttccatagtg gtataaagat
    41761 ttctttccat agaacgaccg atcacacaaa cttttctacc gtattttaaa ccataagtga
    41821 tagcttgata aacgcggtgg atattagaac taaaagtact catgatcacc ctgcctttgg
    41881 tacgtgcaaa gatttgatca aaagttggcc ctacggagct ttcacttttt gtataacctt
    41941 ctttgtacga atttgtacta tcgcttaaaa gacataaaac cccttcttct ccataatgtg
    42001 ccaaacgtcc taagtctgtt ggatagccat cgattggagt ttgatcaatt ttaaaatcac
    42061 ctgtgtggat aatcgttcct gcttttgttt tgatcgcaag tgctgaagca tcaatgatag
    42121 aatgcgtgat gtggatccac tctatatcaa attcgcctat ctcataaaca cggcgttttt
    42181 ctacagggcg aaaccatttg cgttctgctt ttaagccatg ttcttcaaat ttgtttgaaa
    42241 tcattcctaa agccaaaggt gtagcgtaga taggaaattg gaattcttta aagaaataag
    42301 gcactgcacc gatatgatct tcgtgtgcat gagtgatcac tataccacga attttatctt
    42361 taatttttct tacatagtca aaatcaggga tgataatatc taccccatgc atagttccat
    42421 caggaaaact catacctata tctactataa ttgcatcttt attggtttca aaaacactga
    42481 tatttccacc aatttctcct aaacctccta aaggagtgat gcggatttta tgctcgctag
    42541 aattattata ttttaaaggg tgtaagcggt tttcatgtga aacacggtta gcttctatgc
    42601 attctgcaag agcgatttgc caatcttcat tacctgtgag ttttgaagga agattgcgat
    42661 ttttcttctt ttttttctca gttttatttt ctgagttttc agaattttcc ttgttggaat
    42721 tttgatcaat ttttggagta tcattttcat tttgcaaaga atcagctaat ttttttctac
    42781 gatttttata tttatagcgt ttattgtttt ttgaatttga gttcggattt tgttcgtttt
    42841 tatttatctc tttgttttcg tccatattca tcctttaatt tgtcataaat tttaaggtat
    42901 aaatcaacgc aaatttcatg tggtctgatg ttttctttta agccaagagt gcttaaaact
    42961 tctaaaactt ttgctttata tgtttttaaa tttcctaaga gttgttttct aggagcttta
    43021 aaacaatctt ttagaaaatt tttgaaattt tctatttcgc aaagttcatc aaaatcctta
    43081 gttttaatca aactcatcac cgctgacata acttttggtg gaggattaaa acattgtgga
    43141 tcaacatcaa aaagtatttt tctttcgcaa atcattgcac ttaaaacacc taaggaagaa
    43201 aactcactat ttccttcttt agcgcagaat ttttcagcca tttccctttg taccattaca
    43261 ataagcccta gacaattttt atcttctaaa gcttttaata taatgtgact tgcaacataa
    43321 taaggcaaat ttgcaaccaa aaaatatggt ttttcatcaa gactaggatt aaaagcttcg
    43381 cttgcgtctt gatggatcaa gttaaatttt ccacattcaa gttctttttg aaatttcttt
    43441 tttaaaatag gtatgagatc attatcgatt tcataagctt ttacttgaga aatttttaaa
    43501 agttcttgcg ttaaatcacc taagccaggc ccaatctcaa tgatattgtt catctctttg
    43561 ggtatggctt ggatgatttt tgctaatacg cttttatcga ttaaaaaatt ttgtccgtat
    43621 tgtttttttg ctttaaccat aagaaataat tttatctaaa aattcttaat taagtctttt
    43681 taggtagaat tatttttgta aaatttcata aggatcaaaa tgattgtttg tgcgggtgga
    43741 aatgaaaatt tttcttttgc aaaagccata ggcataggtt tggttgagtc agcttttcat
    43801 ttgagtcaac tttacttcaa agaaaaacca tcaaaactta tatttatagg aacttgtggg
    43861 ctttatgata agggagagat tttagaaatt tatagaagtt cgcacgcttt taatgtagaa
    43921 ttttctaaaa tttcacatgc attttatact cctgcaaaat atgaaatttg cttagaaaaa
    43981 gaaaatgttt ctcgtgaaac aataaaaatc aattcttcaa attatatttg tcaaaattca
    44041 aaagcagcaa aagaattttc aaaattaggt ttttttgcag aaaatatgga agccttttct
    44101 gttttgagcg tagctaaaaa tttaaatatt gatgcagagt gtattttgtg tgcaacaaat
    44161 ttttgcaatg aaaacgctca cgaagatttt ataaaaaatc atcaaaaggc aaaagaaaaa
    44221 ttagaagaat acttaaaaaa atatcattat atttaaaaat tcaaaaaagg aaaataattt
    44281 tgaaagagct tgttaatatt ttagattttt tacctgaaga attaggagaa aaaatcaaac
    44341 cgatgtttcg cgtgaaacaa atttatcaat ggatttatca aaaatacgcc aataattttt
    44401 ccgatatgtc aaatttacca aaagatctac gtttagaact tgcgcaaaat tttcatctct
    44461 ctcctgtaaa atgtgttaaa aatgagcaaa gtaaagatgg aagtataaaa tatctttttg
    44521 aactcgttga tggtttaagg atagaaagtg tgcttttgcc tatgaaagaa gaaaaaatag
    44581 acgcagaagg caaaagaatt tctcatgcga gatatactat ctgtgtttct tctcaagtag
    44641 gttgtaaaag tggatgtagt ttttgtctta ctgccaaggg tggtttgaaa agaaatttaa
    44701 gtgcaggtga gatagtcgga caaattttat ggatcaaaaa acaaaacaat atcccttatg
    44761 aacgccgtgt aaatatagta tatatgggta tgggcgagcc tttggataat cttaaaaatg
    44821 tttctaaagc ggtaaaaatt ttagcgcaaa atgagggact tgctataagt cctcgccgtc
    44881 aaaccatcag tactagcggt ttggcaaaac aaatcaaaga attaggtcaa atgaatttag
    44941 gtgttttact tgctatatca ttgcatgcgg ttaatgatga gcttcgaacc gaacttatgc
    45001 ctatcaataa agcttataat atcgctgcga ttatggatgc ggtgcgtgaa tttcctatag
    45061 atcaaagaaa aagggtaatg tttgaatatc ttttaattga tggtatcaat gataagcttg
    45121 aacacgctaa agaattagtc aagcttttaa atggcattaa agctaaagtg aatttaatac
    45181 tctttaatcc acatgaagga agtttatata aacgccctag tttagaaaat gcgattaaat
    45241 tccaagattt actaagtaat aaaggtgtaa cttgtactat aagagaaagt aaaggacttg
    45301 atatctcagc tgcttgtgga cagcttaaag aaagggcaaa agaacaatga caatgctaga
    45361 tattttcgaa atcattttta taacaactgt tgtaattata ggttttggtg gaattgtttt
    45421 tgtagtaaca aaagaaaaaa aataattatt acacttaatg gtgtcaaggg ggagacttga
    45481 actcccgacc tccggcttat gagaccagcg ctctaaccag ctgagctacc ctgactaaaa
    45541 ataaaaatat aattatacta ctttttacta aaaattttct gatttttaaa aaaataattt
    45601 tattttcaat atttaaaaaa tttctttatt tttaaagctt ttatagatat aatgaacgct
    45661 ttatttcata gacaggtgtc cgagcggttg aaggagcacg cctggaacgc gtgtaaagtg
    45721 caagctttcg agggttcgaa tcccttcctg tctgccatca aataaacttt aaggcaaact
    45781 aagttataat acaaacttca tttggggcat tagctcagct gggagagcac aacgctggca
    45841 gcgttggggt cagcggttcg aacccgctat gctccaccat atggttccgt agctcagctg
    45901 gtagagcact accttgacat ggtagtggcc gttggttcaa gtccaatcgg agccaccatc
    45961 acccttcctt atacaaagga ttatcatgca aaacactatc atacaaaaag ccatccataa
    46021 agatttaaat tctatacttg aaatcacaaa agatgcttta aatgctatga aaactatgaa
    46081 ttttcaccaa tgggatgaga attatcccaa tgaaatagtt tttcaagaag atatacaagc
    46141 acaagaactt tatgtgttta aagaaaatga tgaaatttta ggctttatct gtatcaatga
    46201 aaaatttgaa cctgaatttt acaaacaagt tatttttaac aaaaattatg atgataaagc
    46261 cttttatcta caccgtttag ctgtcaaaca aaatgcaaaa ggcaaaggcg tagcacaaaa
    46321 acttttaaat ttttgcgaaa attttgcctt ggaaaatcac aaggtaagtt taagagcaga
    46381 tactcatagt aaaaattttc ctatgaattc gctttttaaa aagcttgatt ttaatttttg
    46441 tggaaacttt gacataccta attaccaaga tcctttttta gcttatgaaa aaattctaaa
    46501 ccaaaaagct ttttgagttt ttttcatagg ctttgatttg tgcttcatgt tttaaagtta
    46561 aagctatatt atcaagccct tccaaaagac aaattctgtg aaaatcatct aaatcaaaag
    46621 aaaaaatctt atctttaaaa aatactcttt tttccaacaa agaaatttct atatttttat
    46681 cttgggattt ttttaactca tcaactattt ccaaaacctc atctttagca agttctatag
    46741 tgagcaaacc gtttcctaag gcattgtttt taaaaatatc cgcaaaagaa ggtgcgataa
    46801 tagctctaat accataatca accaaagccc aaggcgcatg ctctcttgaa gagccactac
    46861 caaaattttc aaaactcacc aaaatagagc tattttgata ttctttttta ttgagattaa
    46921 aatccatatt taaaacactt tctttatcat ctaaataacg caaatcatgg aacaaatgct
    46981 tgccaaaacc ttgcttagac actgcaagta aaaattgctt aggtataatt tgatctgtgt
    47041 ctatattggc atattctaaa ggacaagcta tacctttgtg tataataaat ttttgcatat
    47101 taaactccta aatactttct attatcacaa ataacacctt ctatggcaca agctgctgca
    47161 cttgcaggac tcatcaaatg agtgatagaa cctttacctt gtctgcctac aaagttacga
    47221 tttgaagttg aagcaactct ttgacctgaa tttgctttgt catcattcat accaagacac
    47281 atagaacacc ctgcatatct ccactcacac cctgcctcga taaaaatctt atcaagtcct
    47341 aaattttcag cttcttttct tacttgcatt gaaccaggca cgattaaagc tttaacattt
    47401 ttatgaattt tgcgcccttt taagatatca gcggctattt taagatcttc taaacgccca
    47461 tttgtgcaag atcctataaa tacaatgtcg atttttaccc cttctataac ttgatcttgc
    47521 tctaaattta cataagataa agcatcaagc aaagattttt gctcactttg atttttaaaa
    47581 tcacttattt ttggaatttt ttcatctatg ccaatcactt gcgaaggatt tgttccatag
    47641 ctaatttgtg gttttatctt gcttacatct agagtaatac tctcatcata ttttactcct
    47701 tcatcacttc ttaaactctt ccaatactca caatactttt gaaattcttc tcctttaggt
    47761 gcaaattcct ttcccttaat atactcaaaa gtgatctcat caggagctat catacctact
    47821 ttcgctccaa attctatagc catattacaa agagtcattc tagcttccat gcttaaattt
    47881 cttataagtt ctccgcaaaa ttctatagca tagcctgtgc cttttgctgt gccatattgt
    47941 gcaatcaaat acaaaatcaa atccttagca taaacgcctt tttgaaactg ccctttacat
    48001 tcgattttca tggttttaag tttggcttgt tttaaagttt gcgttgccat gacatgctct
    48061 acttcactcg tgcctatacc aaaggctaaa gctccaaaag ccccatgtgt tgccgtatga
    48121 gaatccccac aaactaaagt aaccccaggt aaagtaaagc caagctcagg acctactata
    48181 tgaactatgc cttgattttt atctccaagt cctaaaagcc ttactccaaa ttccttagta
    48241 ttttgcatca aagttgtaat ttgctctttt gccatatcag aacaagcatt taaatccaca
    48301 cttttagttg aaacatcatg atctatggta gccaaagtta aatccgctct tgccattcta
    48361 cgcttagcca ttttaagccc tgaaaatgct tgagggcttg ttacttcatg gattaaatgt
    48421 ctatcgatat aaagtatagg aagttcgttt ttgccttcat aaaccacatg agcatcaaag
    48481 actttctcat ataaagtttt agccattatt attctccttt aaaatttcta aaatacaatc
    48541 ccccatttca tcggtattta aatacgactt agtatttaaa tccttggtca tttttccttg
    48601 cgccaatgcc aaagatatag cattttctat atcctgtgcg gcttgttctt ctttgaaact
    48661 atactttaac atcaaagccg cacttaaaat ttgagctata ggattagcta tatttaaatg
    48721 agctatatca ggcgcacttc cacctgctgg ctcataaagt ccaaaacctt tatcgtttaa
    48781 acttgctgaa cttaacaaac ccaaagatcc attaatggca gctaactcat cactcaaaat
    48841 atcaccaaaa agatttgaac aaagcataac atcaaaaatg ctaggatttt ttacaatctg
    48901 catcgcagca ttatccacat acatgtactc taagtttata tcttgataat cttttgcaac
    48961 atttgccacc acttctcgcc acaaaataga acttgctaaa acattcgcct tgtcgattaa
    49021 atgcactttt ttctttctta ttcttgcact ttcaaaagcg atatgagcta tcctttctat
    49081 ctctttttta gtgtaaattt cagtatcata cgcactttct ttacctaaat cttgcttacc
    49141 aaaataaatc ccacctgtaa gctctctaac acataaaata tccactcctt tttggataat
    49201 ctcatttttt aaaggtgaag catgagttaa actttcataa attttacaag gacgcaaatt
    49261 tgcaaacaaa ttaaaatgct ttcttaaagg caaaagcgag gctctttcag gtctttgatc
    49321 tatgggcaaa ttatcccact taggccctcc aacagagcca aataaaatcg catcactttg
    49381 ctcacaaagc tttaaagttt catcacttaa agccactcca taagcatcta tacttgcacc
    49441 gcctatttta gcttcattaa attcaaaact aaaattgtat ttttgcgcga taaaagttaa
    49501 aatttttaaa gcctctttca tcaccaaagg ccctatacca tctcctgcta agacagctac
    49561 tttataagtt ttcatgccat tttcctttct tctactttta aagagcgata aatcgcattg
    49621 taagcactca caaaagcttg tgctgaagct tctataacat ctgttgaaat tccttttcca
    49681 tggaattttc tccctttaaa ttccaaatcc acatccactt gtccttgagc atctacccct
    49741 gaactttttg cattgatact ataagctttt agcgcaggct ttaaattcgt tatcctagca
    49801 atgcagttaa aaactgcttc aacaggacca tttcctgtgc aagcttcagt ttttaactct
    49861 tctttaatac gcatacaaac acaagcagtt gggatattgc cactaatcac gcttaatttt
    49921 tcaagtataa atttattttc ttcttcattt tcatagctta aaaacatcaa agcttccaaa
    49981 tcataatcat acacttgacc ctttttatcc gcaaggcgta aaaaacgctc ataaacatca
    50041 tctaaattat aagtattttc atcatagcct aaattttcaa ggcaagtttt tatcatagcc
    50101 cttccacttc ttgccgtcat taacatacga ttttcatgaa ttcctatggc actagggctt
    50161 atgatctcgt aagtttgcct atttttaagc actccatctt gatgaatgcc tgaactatga
    50221 gaaaacgcat tgctacccac tatagcttta tgcgaaggta tactttcatt agtgatagct
    50281 gaaactaatt ttgaagtttt aaagatattt tcacatttaa tatcagtata aaaacctttt
    50341 aaataatctt tcctagtttt tatcgccata accacttcct ctaaagcaca attacccgcc
    50401 ctttcgccaa gtccatttat agtgcactct atctgtcttg caccttgtaa aatagcactt
    50461 aaactattgc ccgttgccat acctaagtca ttgtgacaat gcacagaaat gatagctttg
    50521 tctatatttg gcactttgtt aaataaaatt ttgatgatat tagcaaattc acttggtaag
    50581 gtatagccta cggtatctgg gatatttata gttttagcgc ctgcttttat cgcattttcc
    50641 accataaaac aaagattatc tatcggagtt cttcctgcat cttcgcatga gaattctaca
    50701 tcatcagtat aagatcttgc tcttataatc gctctttttg ccatagacaa aatttcatca
    50761 aaatcttttt ttaatttatc ttgcatatgc aaagtcgaag tggctataaa agtatgaatt
    50821 ctaaaatgct ttgccacttt taaagcttca taagccatat ctatatcttt atccaatgct
    50881 ctagaaagtg cacaaatagt tgagttttta accttagaag cgatcttttg caccgcttta
    50941 aaatcccctt gtgaagatac cggaaaacct gcttctataa catctacgcc taaattttca
    51001 agcgctaaag cgatttgtaa tttttgattg atactcaaag aactgcctaa agcttgttct
    51061 ccatcacgca aagtggtatc aaagattatg attttattat ctttcatgat ttaatccttt
    51121 aaaaccaaac agactgaatg aattaaaaat tcaaaaactt aacaacaatg ataaaaaatt
    51181 aaaaatgtaa aaaatgatta aaaataaaat tgagttttag agtgagagtt gcagtagcag
    51241 attaaaagta ttgtctttac ttttttgttg gactgaattt gaaatttcaa aaatttgttt
    51301 catcttttcc tcctttgtta aaattaatac ttaatgtatc atatttttag taaatgtgtt
    51361 tgtaaaattc ttaaattaag aaaattattg atataattgt aattttaagt aacaaaaagg
    51421 aagttgatgt taaaagaact cttagagatt aaaaaagaaa tggaacctgt tatccacgaa
    51481 gccaatgtga aattaaatgt cctagctcgt gaagtcatag tccgaaaaaa agaatacgaa
    51541 atttatgggc ctatggtaga tcgtgtttat cttgataatg ccatttatgt taaagttatg
    51601 tcaagtggac gcgatgtaaa aacagacaat gtgactataa aaaatggttt ttatatggtt
    51661 tttgttgccc ctgaaaaaga aagtacaaaa gatatcaaaa ataaactcaa agtagcttat
    51721 gaaggacttg ataacaaatt tatcgctaca cttatacgat cttgccaacg ctttaaagag
    51781 atcataaaca aaacccaagc tacacttgct aaagcttcta aaatgaatgt ggtagtaaaa
    51841 acgaatttag gtgaagcaag tgctgctcta aaatttaaca tcactataga atatactaaa
    51901 gagaatcaaa aactcactcg tgaaaattca aaatcagcag gaagtttcag agatactaaa
    51961 acttatatca atcttgtagt agaaaaaaat acagattctc aaatttgtga aaaactactt
    52021 gatgatgttg aaaaatactt tatcggtgga ggttgatttc attaatgcaa gttataaaaa
    52081 cttgcattag attaaaattt ataattatat cctaaatata caccataatt tgtttgttta
    52141 ggatcgtaaa agtttgaacc cactttattt tgataaaaat ttctagaatt ataatgaatt
    52201 tgctctgctt taaagcctaa ttctatttca ttatgtggtg tcaa
//
LOCUS       DARGED010000002        44083 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.002, whole genome shotgun sequence.
ACCESSION   DARGED010000002 DARGED010000000
VERSION     DARGED010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 44083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44083
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.002"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..155
                     /locus_tag="SFZ84_000075"
     CDS             <1..155
                     /locus_tag="SFZ84_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202248.1"
                     /translation="SLAFMDFGFEDLLEYAKNKNIKTYESFLSQTKILFFNFDEKFHF
                     FEFQKN"
     gene            complement(152..1126)
                     /locus_tag="SFZ84_000076"
     CDS             complement(152..1126)
                     /locus_tag="SFZ84_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8202249.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLYHKDFLNYAIKLFHMEEKKAI
                     KEVGTMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            1182..1955
                     /locus_tag="SFZ84_000077"
     CDS             1182..1955
                     /locus_tag="SFZ84_000077"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG8202250.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLRQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELNQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            1952..3046
                     /gene="pdxA"
                     /locus_tag="SFZ84_000078"
     CDS             1952..3046
                     /gene="pdxA"
                     /locus_tag="SFZ84_000078"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEG8202251.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(3036..3638)
                     /locus_tag="SFZ84_000079"
     CDS             complement(3036..3638)
                     /locus_tag="SFZ84_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202252.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            3751..4950
                     /locus_tag="SFZ84_000080"
     CDS             3751..4950
                     /locus_tag="SFZ84_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8202253.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            5006..5326
                     /gene="ciaC"
                     /locus_tag="SFZ84_000081"
     CDS             5006..5326
                     /gene="ciaC"
                     /locus_tag="SFZ84_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG8202254.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            5510..6532
                     /locus_tag="SFZ84_000082"
     CDS             5510..6532
                     /locus_tag="SFZ84_000082"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG8202255.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFSKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            6529..7431
                     /locus_tag="SFZ84_000083"
     CDS             6529..7431
                     /locus_tag="SFZ84_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG8202256.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPILLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(7428..8624)
                     /locus_tag="SFZ84_000084"
     CDS             complement(7428..8624)
                     /locus_tag="SFZ84_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202257.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(8626..10428)
                     /gene="uvrC"
                     /locus_tag="SFZ84_000085"
     CDS             complement(8626..10428)
                     /gene="uvrC"
                     /locus_tag="SFZ84_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG8202258.1"
                     /translation="MIKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISKEKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLAMLVGKKAAQKIKEN"
     gene            complement(10421..10915)
                     /locus_tag="SFZ84_000086"
     CDS             complement(10421..10915)
                     /locus_tag="SFZ84_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202259.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            11054..12589
                     /gene="guaA"
                     /locus_tag="SFZ84_000087"
     CDS             11054..12589
                     /gene="guaA"
                     /locus_tag="SFZ84_000087"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG8202260.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            12675..14135
                     /locus_tag="SFZ84_000088"
     CDS             12675..14135
                     /locus_tag="SFZ84_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202261.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            14375..15625
                     /gene="purD"
                     /locus_tag="SFZ84_000089"
     CDS             14375..15625
                     /gene="purD"
                     /locus_tag="SFZ84_000089"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG8202262.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSENFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            15622..16074
                     /locus_tag="SFZ84_000090"
     CDS             15622..16074
                     /locus_tag="SFZ84_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8202263.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            16064..18112
                     /locus_tag="SFZ84_000091"
     CDS             16064..18112
                     /locus_tag="SFZ84_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG8202264.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            18182..20341
                     /locus_tag="SFZ84_000092"
     CDS             18182..20341
                     /locus_tag="SFZ84_000092"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG8202265.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDISMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEITKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            20338..20820
                     /locus_tag="SFZ84_000093"
     CDS             20338..20820
                     /locus_tag="SFZ84_000093"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG8202266.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(20864..21526)
                     /locus_tag="SFZ84_000094"
     CDS             complement(20864..21526)
                     /locus_tag="SFZ84_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG8202267.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(21544..22728)
                     /locus_tag="SFZ84_000095"
     CDS             complement(21544..22728)
                     /locus_tag="SFZ84_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8202268.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            22782..23237
                     /locus_tag="SFZ84_000096"
     CDS             22782..23237
                     /locus_tag="SFZ84_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG8202269.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            23489..24763
                     /locus_tag="SFZ84_000097"
     CDS             23489..24763
                     /locus_tag="SFZ84_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HEG8202270.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNNKQDHKYRAQVNFSAAIADNFKAFIQFDYNAVDGGTGVDNKTN
                     AEKGLFVRQLYLTYTNEDVATSVIAGKQQLNFIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAVDSFMAAEQGAELLGRSNISTTSNQAPFKVDSLGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(24878..25999)
                     /gene="dnaJ"
                     /locus_tag="SFZ84_000098"
     CDS             complement(24878..25999)
                     /gene="dnaJ"
                     /locus_tag="SFZ84_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG8202271.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            26156..26827
                     /locus_tag="SFZ84_000099"
     CDS             26156..26827
                     /locus_tag="SFZ84_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8202272.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            26824..28059
                     /locus_tag="SFZ84_000100"
     CDS             26824..28059
                     /locus_tag="SFZ84_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8202273.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNGLKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            28059..28631
                     /gene="recR"
                     /locus_tag="SFZ84_000101"
     CDS             28059..28631
                     /gene="recR"
                     /locus_tag="SFZ84_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG8202274.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDKERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(28628..29164)
                     /locus_tag="SFZ84_000102"
     CDS             complement(28628..29164)
                     /locus_tag="SFZ84_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG8202275.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(29161..29853)
                     /gene="cybH"
                     /locus_tag="SFZ84_000103"
     CDS             complement(29161..29853)
                     /gene="cybH"
                     /locus_tag="SFZ84_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG8202276.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEQH"
     gene            complement(29864..31579)
                     /locus_tag="SFZ84_000104"
     CDS             complement(29864..31579)
                     /locus_tag="SFZ84_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG8202277.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTPNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(31582..32721)
                     /locus_tag="SFZ84_000105"
     CDS             complement(31582..32721)
                     /locus_tag="SFZ84_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8202278.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(32842..34683)
                     /gene="mnmC"
                     /locus_tag="SFZ84_000106"
     CDS             complement(32842..34683)
                     /gene="mnmC"
                     /locus_tag="SFZ84_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG8202279.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNFKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(34680..36659)
                     /locus_tag="SFZ84_000107"
     CDS             complement(34680..36659)
                     /locus_tag="SFZ84_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG8202280.1"
                     /translation="MAKIFVFLVFVFTTLFGVYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISETSINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(36659..37750)
                     /locus_tag="SFZ84_000108"
     CDS             complement(36659..37750)
                     /locus_tag="SFZ84_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG8202281.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(37747..38952)
                     /locus_tag="SFZ84_000109"
     CDS             complement(37747..38952)
                     /locus_tag="SFZ84_000109"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG8202282.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYKTQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(38964..41159)
                     /locus_tag="SFZ84_000110"
     CDS             complement(38964..41159)
                     /locus_tag="SFZ84_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG8202283.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLVRRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKES"
     gene            complement(41143..41367)
                     /locus_tag="SFZ84_000111"
     CDS             complement(41143..41367)
                     /locus_tag="SFZ84_000111"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG8202284.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(41378..42097)
                     /locus_tag="SFZ84_000112"
     CDS             complement(41378..42097)
                     /locus_tag="SFZ84_000112"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG8202285.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(42149..43342)
                     /locus_tag="SFZ84_000113"
     CDS             complement(42149..43342)
                     /locus_tag="SFZ84_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8202286.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(43339..>44083)
                     /locus_tag="SFZ84_000114"
     CDS             complement(43339..>44083)
                     /locus_tag="SFZ84_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202287.1"
                     /translation="EFILITNATLKHYEELVNKDYNIIVVSKTELDQNVVKTKVPFFA
                     GLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLKLNSLPDQNELNSIKNQLLNIV
                     GVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLAFVLFLKQMRIWLYEHTDRIEI
                     MCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQIFDLSIIQESLKAVDIIFPPIN
                     FILHLTLIFLATLFICLLCVNTVMFKVKR"
BASE COUNT        15302 a         7609 c         6244 g        14928 t
ORIGIN      
        1 aaagtcttgc tttcatggat tttggttttg aagatttatt agaatacgca aaaaataaaa
       61 acattaaaac ttacgaaagt tttttatctc aaactaaaat tttatttttt aattttgatg
      121 aaaaatttca ttttttcgaa tttcaaaaaa actaaaattt tatatttttc atacttgcta
      181 aacaaacccc ctctcttaaa ccctcatcaa tgactagaag tttatgttta tcaaacaaag
      241 cataaaacag caaacaacct gcactcaaat aattttttct cattgtgcct acttctttta
      301 tagctttttt ttcttccata tgaaaaagtt taatagcata atttaaaaaa tccttatggt
      361 aaagtttttt accatttact ttagttgctt catacttttc atagcttata ttttgtttta
      421 atgcgctaag tgtggtagga actccggaat ttaaaaccac cgttttagcc cctaaagaac
      481 gaagttcctt tttaatcata gccacctcat caaaagccct aaaagctaga tgctttaaat
      541 agggatttgc aattaaaaaa tgaattttaa gttttttatc tttaatattt atgataaatt
      601 taggatattt ttttattaat tttttataag aaatacaaga tttataataa gaatggtaat
      661 ttttttcata aaaactaata ataccaaaat caaaactttt aaaacttttt ccaaaagaaa
      721 gctcacaaga agcccctcct aaatcacaat acgcaaactc tccccaaatt ttaagccttc
      781 ttaaacctga ttgcatacct aaaacactga tcttagcttc acttttggca tctataagct
      841 taaaatcaat cccaaattct ttttttaaat gggcaaaaat ttcatttgta ttgcttgcct
      901 ttctaaaagc tgcagtcgct acagctctcg ctttgcttaa atcttgctct ttagctaaaa
      961 tactcaaagt attttttaat ctttgtatgg cttctttaga aatttctcca ctttgattta
     1021 gatttttcgc tgccccaata acaaattcat attcttttaa tttatttaat ttttcatcca
     1081 tttgtactgc tcttaaagta tttgaaccaa gatctatacc taacatgact ttccttattt
     1141 gattttatag tataatagca aaaaagttct aaaggaaaaa tatgctttta ggtgtaaata
     1201 tcgatcatat tgcagtgtta agacaagcta gaatggtaaa tgatcctgat cttttagaag
     1261 ctgcttttat agtagctaga cacggagatc aaatcacttt gcatgtaaga gaagatcgcc
     1321 gtcatgctca ggattttgac ttggaaaata ttataaaatt ttgcaaaagc cctatcaatt
     1381 tagaatgtgc tttaaatgat gaaattttaa atttagctct taaactcaaa cctcaccgcg
     1441 ttactttagt gcctgaaaaa agagaagagc ttactacaga aggggggctt tgtttaaatc
     1501 atgctaaatt aagacaaagc atagaaaaac ttcaaaatgc aaacattgaa gtttcacttt
     1561 ttattaatcc tagtttagaa gatatagaaa aatcaaaaat tttaaaagcc caattcatag
     1621 agcttcatac aggacattat gcgaatttgc acaacgcact ttttagtaat atctctcata
     1681 ctgcttttgc cttaaaagaa ctcaatcaag ataaaaaaac cttgcaagct caatttgaaa
     1741 aagaattaca aaatttagaa ctctgtgcca aaaaaggcct agaacttggc ttaaaagtag
     1801 ccgcgggaca tggtttaaat tacaaaaatg taaaacccgt agtaaaaatt aaagaaattt
     1861 gcgagctaaa tataggacaa agcattgtag caagatctgt atttacagga cttcaaaacg
     1921 ctattttgga aatgaaagaa cttattaaaa gatgaaaaaa ctagccatta gtataggcga
     1981 tataaacggc ataggacttg aaattttagt gcgttctcat gaagaactaa gcaaaatctg
     2041 cacacctttt tattttatcc acgaaagctt gcttgataaa gcttcaaaac ttttaaattt
     2101 aaaacttttt aatgcaaaaa tcgtagcttt taaagatgga aaagactatg agtttaattt
     2161 tgtaaaaaaa gaaaattctc ttgaaattta ctctttctac cttcctttag gctttaaagt
     2221 ggatgaaaat tttgaaatca aagccggaga aatagataca aaaagtggac tttatggttt
     2281 tttaagtttt aaggcggcaa gttattttgt ctatgaaaaa cacgcccatg ccttgcttac
     2341 tctacctata cacaaaaaag cttgggaaga tgcaggactt aaatacaaag gacacaccga
     2401 tgctttaagg gattttttta aaaaaaatgc cattatgatg ttaggttgca aagaactttt
     2461 tgtagggctt tttagcgaac atataccttt agctaaggtg agtaaaaaaa tcacttttaa
     2521 aaatttaagt atctttttaa aagattttta caaagaaaca cattttaaaa aaatggggct
     2581 tttaggtttt aatcctcacg ctggagatta tggagttata ggtggagaag aagaaaagat
     2641 catggaaaaa gctatagcct ttgttaatgc ctttttacac tctaaaaaag atgaaaaatt
     2701 tttcaaaaaa gccttaaaag atgaaaattt acaaaaagaa ttgcttttaa attttaaagg
     2761 caagggcgtt tatctaccct atcctttagt ggctgataca gcttttacta agactggttt
     2821 aaaaaactgc aatcgtttag tggctatgta tcacgatctt gcccttgctc ctttaaaggc
     2881 cttgtatttt gataaaagca tcaatgtaag tttaaattta cctatcatac gcgttagcgt
     2941 tgatcatggc acggcctttg ataaggccta taaaaatgct aaaatcaaca ctaaaagtta
     3001 ttttgaagcg gctaaatttg caatcaattt acattctaaa gcttaaattt agccctagaa
     3061 tcaatcaaat cttctttagc taagctgtct ataaaatctt gcaaatcttt attggtattt
     3121 aaactttgag tgagtaaatt ttcatattta tcaactttat ttttaaaaat ttgctctaaa
     3181 acttctttag tctttgtatc tttttttgct ctttgcataa gttctaataa aaccttaata
     3241 taagcttctt gcatgcaatc acttgcattg agtaaagata aaataggatt ttcccctgct
     3301 tttgtatttt gcatattttt tatacaaatt tttctttctt taagcatctt ttttgaaatg
     3361 gctttaaaat cttttttcat ctttttatct gctttttttg aaatattttg atataaacta
     3421 ctatagatgt tatctactaa agcaagtttt ttattatcaa attcattacg cacaccaatt
     3481 ttattgcata tcataagttc atcatcactt ttgccatcat atttgatttt agagcaatca
     3541 aaactaggtt ttacttcatc tttataaata agctcatcaa aactcaaagc ccctaaactc
     3601 gccaaactta aaccaagcaa taaaataatt tttttcatta tttaccttta aaatttttat
     3661 tttattttaa caaaaatatt ttgaattttt taaggaaatt aagcctttat tttattataa
     3721 tgcgttttta ttttttataa ggaacttaaa atgcaaaatt acaaaaaagc tctttttgca
     3781 ctagctctta gtgctttttg tatgggcgta actgaatttg ttatggcagg agttttggtt
     3841 gatgttgaag cgtattttag cgtagatgca aaaaccgcgg gctatcttac aaccttatat
     3901 gctataggtg ttgttatagg tgctcctctt atcaccatac ctttaagtcg ttttcataga
     3961 catacacaac ttttaatcaa tcttggaatt tttgctttag caaatttcat catctttttt
     4021 agccaaaatt tctatcttac tgcttttgca cgctttatag caggaacaca acatggggta
     4081 ttttttgtca ttgccacctt agctgtaagt gctataactc cagatgataa aaaatcaagt
     4141 gctctagcta taatggtcac agggcttact gtagccttag ttactggagt gccgcttgga
     4201 acttttatag ggcattattt tggctttaaa tttatctttt tactcatttt tatcattaca
     4261 agtctagcat tttttggagt atggcatatg atgcccaaaa atttacatcc tagcccaacc
     4321 agtcttaaaa atctaatccc tgctttttct catcaaaatt tgttaaaaac ttatactata
     4381 accatttgta gttgtggggc tcaatttgtt ctttatactt atttgcaaaa aatacttgta
     4441 gaaataagcg gttttaaagt ccaagataca gcttatatct tgcttttata tggaatttgt
     4501 gcaatttgtg ggaatttatg gggcggaaaa atagtagata aaaaaggtgc tattttttct
     4561 ttgcgtctta ttttaagcat acaagttcta gtatttttaa gtgtatttct caccatgcat
     4621 tctaaaattt taatcatttt tagcgtagct ttgataggat tttttgcctt ttcaaccata
     4681 cctgcactaa aaatgcttag cattactaaa gctaaacgcc atacttataa agtcatagac
     4741 agtacagtaa gtgtgaatga agcagctttt aatgtaggca tagctttagc aagtttttta
     4801 ggtgggattg ttttagcaag attgggtata gaatttaatg ctttattttc agcacttttt
     4861 gtaagccctg ctttgatttt tgccttgctt tttgccaaag ataaattaaa ttataaaaaa
     4921 tttcaaagaa aaagttttac aaaggtataa attggaatag aaattgcttg cttatttaat
     4981 gtaaagttaa ataaaggagg agaaaatggt agtagataat actcaaaaaa catcaaatgc
     5041 tatctttagc accacaacta aagttaaaga aaaaaatact tcggcagatg aatttcaagc
     5101 cacattaaat gaagtaaaaa acaaagaaga aaaggaagat aaaaaaacaa actcaagcaa
     5161 atttactaac gaagacattg atcttggtgc tgttagagaa gattttagat cttatgcttg
     5221 gcaaaaaatg agagaagatc aatacaaaaa aaatgaggag actttgctaa ataagctttt
     5281 tactacaatt gacgcaggaa atgccacaaa caatacaaag gcttaatata caaatcaatc
     5341 aaaactcaaa ctacataaac gagaattcca ataattctcg taaaatttct aataactctg
     5401 gataaaatga aaaaatttat tatttcctct atatgaagaa aatatagaaa aattgaccaa
     5461 tttaatttat caaattctgt tataattttg ctaaaaacaa aggaaaataa tgatttttat
     5521 cgatgcttgc tttaaaaaac ctacacccta cacccctatt tggatgatgc gtcaagcagg
     5581 aaggtatttg ccagaatata tggaagtaag aaaacaagcg ggtgattttc tctctttatg
     5641 caaagactat aaaaaagctt ctgaagtttc tttacagcct attgatattt tagatgtaga
     5701 tgcagcaatc attttttcag atatcttagt tgttcctctt gaaatgggta tgaatttacg
     5761 ttttgaaaaa ggagaagggc ctgtttttga taatcctatt tcaaccctag aagatttaga
     5821 aaaacttgac gatcaaaatg cacataaaaa attaaattat gtctatgatg ccttaaagct
     5881 tacaagagaa aaattatctc aaaacaaggc tttaatagga ttttgcggaa gcccttggac
     5941 tatagctacc tatatgatag aaggaagtgg aagtaaaaat tatgcaaagt gtaaaaaaat
     6001 gctttatcaa aacccagaac ttttacataa aattctaaac aaactaactc aagttttaaa
     6061 actttattta gaagagcaaa ttaaagcagg tgctaatgct atacaaattt ttgatagctg
     6121 ggcaagtgct ttagaatatg ataagttttt tgaattctct tttaattata tgcttgaaat
     6181 ttcaaatttt attaaaagca aatacccaaa tatacctgta attttattct ctaaaggcat
     6241 tagcggttat ttggatagaa tcgatggtaa ttttgatgtt tttggagttg attggagcac
     6301 tccgcttgat ttagcacgtg ataaactatc gcacaaatac actcttcaag gcaacatgga
     6361 accttgtaga ctttatgata aaaatgccat caaagaagga gtcggaaaaa tactaaaaac
     6421 catgcaaaat aaagctcata ttttcaactt aggacatggg atcttgcctg atattcctgt
     6481 tgaaaatgca aaatatttta tcaagcttgt acaagaaagt tcagctaaat gaaaatactc
     6541 tttggtcctg ttagctcaag gcgttttgga agatctttgg gtatagattt aagccctagt
     6601 aaaaaacaat gcaattttga ttgtgtttat tgcgagcttg atccaaaaaa agcccaagaa
     6661 aaacaggatg aaattatcag catagataaa attatctccg aagttaaagt tatgcttgaa
     6721 aaaaatgttg aatttgattt tcttaccctt actgccaacg gagagcctag tctttatcct
     6781 tatttaaatg agcttatttt atctttacgc agcattgcta aagataaaaa attgcttatt
     6841 ttaagcaatg gtacagctgt attagatgaa gacaaattta atgctttgct aaaactagat
     6901 gtggtcaaat ttagcctgga tagtgcagtt gctaaaactt tttatcgtat tgatagagct
     6961 ttaaaaaaca ttgacttaga aaaaatgata gaaaaaatgg cagattttag agctaggttt
     7021 aatggagatt tgattatgga aattctagtt gttaaagatc ttaatgacaa cgaagaagaa
     7081 tttgaagcac ttaatcaagc tttaaaaaaa atcatgcctt taagagttga tctaagcacc
     7141 atagatagac ctcctgctta tgctgttaaa aaagtaagcg aagaaaaact tttagaactt
     7201 tctaaactta tagattctac tcccatactc ttagccaaaa gacattatga aggtgaaaaa
     7261 ctaagcttca atgaagaaga attattaaaa atgcttcatt tgcgctcaca aagcgaaata
     7321 gacattgaag tgaaatttga tgaacaatcc aaaactctct taaatcaact tatcaaagaa
     7381 aaaaaggtaa aaattctcga tttagctgga gttaaatttt ataaagttta ggcctttggc
     7441 aaatactttc taagtaaagt tataagatca tttctactta catcacttaa aacttcgctc
     7501 acacaatcaa aatccctaac tttttccttt gaaaaaaaga tgatatggct ttgtggatgc
     7561 tgttttttat aagcacttag caaatttctc atttgctcaa gatcaaattt aattaattca
     7621 taatcaagta aaatcaaacg ataagtctcc ttgcttaatt cttgttttaa ttgactaaaa
     7681 gaatttatac atatattttt atcacattgt ttttctatta tattaaaaaa caaggttgca
     7741 tcaaaatcat tttgtttaaa aagcaataca ttattttgat aaggggtttt aaattttaaa
     7801 gtgcaaacct tatcaagctt gttttgcaaa atattttcaa gatctttttt ttcaaaaggt
     7861 aaagttaaaa aatactcata atgtgtattt ttatgccgac ccatcactat aaaatcataa
     7921 tttttcttta catttttatt gaaaatttta tccttgataa aaatcaaatg aaagtcatta
     7981 acatcaaaac ttaaattttt aaaacaagtg ctttctatgc caaaatacga aagtaaattt
     8041 gcaagtaaaa aattctcaag ctcatcatta ttaactatgg ccacacttgc ttcaaattgc
     8101 aaaacctttc catgagatgt tcctataatg cttttatgat gctctaaagc ctcatttaat
     8161 tctaatctaa tttgatcttt ttgagaattt aaggcattta aaatcaaaga attaatttct
     8221 ttattatacc cttcatttaa gcaacgcatt gcattagata tatttacaag ctgatataaa
     8281 ttttcctcca ataaatgcaa atatctatct ttttcatggg atattttagt taaattttgg
     8341 ctcgtagttt caaatttttc ctttaacaaa tcaagcgcac tatcaacatc aatctttttt
     8401 tgaaaattta aaaaatcatt ttgcatgcaa aaaatttttt gatatatttt gtttatattt
     8461 ctattttgcc taaaagcaaa aataaaaagt gttaaagata aaacaaaaat gctagaaaac
     8521 atacctattt tcagttgttc agtaacacta tcaagctttg agatatcaat acttaaatac
     8581 gctaaaatta gattaaaaat aaaaattatc cctgctaata tcaaatcaat tttcctttat
     8641 cttttgcgcc gctttcttgc ctacaagcat tgcaagatct ttaaaatcag ccttatatat
     8701 agattcaaaa tttccataat acgctaaaag tttttgtata acccctgaac taagtcctaa
     8761 atttacaagc ttagaactat tcaagtcctg ttttttctta gtattttgat gaaagctgat
     8821 agcaaaacgg tgtgcttcat ctcttaattt ctgtaagaat tgtagttttt tatcgttaat
     8881 gcttagacta aattctcctt ttaaggaatg aattttatcc ttagcacccc ctttagctct
     8941 atgtgctttt gcatcgattt tttcttttga aatagctaaa atatcgacat ttgccccact
     9001 acttacaatg atttctttag ccaaatcaag caaagccttt cccccatcta taagccataa
     9061 atcaggagga ggtattttat caaagtccaa agccctacgc gttaaaactt cacgcatttg
     9121 atcatagtca tttttatgtt ttaaatgaaa ttttctatat tttgacttat cccaagaatt
     9181 tattctataa gttaccatag ctccaacatt tgccacgcct tgcaaatgag aattgtcaaa
     9241 aatttctata tcatttggta aattttcaag ctcaaaataa aactttaatt ctttttgtat
     9301 agtaaaatca tgattttttt gctctttttc tatatttaaa agggcatttt gaaaagccaa
     9361 atcacaaatt cttctttttt ctcctatttt agggatttta atactgattt ttttatcaaa
     9421 cctttggctt aaaatttctt ctaaaagcac tctatcttca aattcttcat aaacataaat
     9481 aacatttgca agcaaaggaa tatccatgct aaaattttct aaaatcagtt gcttataaat
     9541 ttcattttga tcccattgta tatcattttt tataggagta atcttagaat ttgcactgat
     9601 aatttttcca ttttgcacca caaaacgcaa ggttgaaagc atggaatttt caaaagctaa
     9661 agcaaatact tcaaaatctt ctaattttgc aatatctatt tcaaccttaa cttccaaatc
     9721 tttaatcatt gcaatctgat ctcttacttt agctgcttct tcgtaatttt cattttgtgc
     9781 taaaacaagc atttgttttt ctaagttttt aagcaaaaca ctaggattta aaagtgcgtg
     9841 tatagcctca tctaaaattt caaggtattt ttctttgctg atgagtttat cacaaggcgc
     9901 aagacaacga gaaatttgat aaaaaataca aggggattta caacttgctt tttgctttaa
     9961 aggatagtat aaataaagcg catctaaaag ctctctagcg cctttaaaaa aagggccaaa
    10021 atatttaatt ttgctttttt ttactaattt tctagtgatc tcaaagcgtg gaaattcttc
    10081 ttcaaaatcc acataaatat aaggataagt tttatcatct cttagcaaaa tattatattt
    10141 tggatgcagt tgtttgataa aagaattttc taaaatcaaa gcatcagcct ctgaattagt
    10201 agcaataaat tccaaatgca ctgtttcttc aatcattttt tgaattctta aagaatttct
    10261 tggatttgca tgtaaatttg gagtaaaagc aaaataagat ctaacacgat ttttaagatt
    10321 tttagccttg cctacatata aaagctttcc ttcttgattg aagtattgat aaacgccagt
    10381 actattagga agagttttta actcattttc taaattctct ttaatcaaga ttagaacctt
    10441 tttttataag ctctcttaaa tcttcaaatt tcttaaataa tttttcatct tcaaagcaat
    10501 ttttaaattc acccttagaa agttccaaat aagaattttt agagagtttt tcatcatttt
    10561 tgtttttatt tgccgcataa gtgtattttt gagaaaagat ttttatatct tttatatcaa
    10621 caaatccact taaaggatat ttctgtccat atgcttttat gagaaattta atataaattt
    10681 tgctatcatc atgatttaat tcttgataag ctgctggatg taaggttatt atatttaaaa
    10741 tatgattttt tacataaatt ttagcaatca aacgttgctt agcaagcgga aaagaactta
    10801 aaaaatcttt gcaaaaaaat aaggttttta aaggcttata atgaggttta tccatcaatt
    10861 cattaataac agcactagca tttttagtca tcttaatatt atttcttttt cccataagat
    10921 gattttagca tttcttttct taattttctt ctgtgcttgc ggatataaag gcaaccctca
    10981 atacacaagc tatgaacaaa atggttcagt aaaaaccatt aaaaaatacg aacaattaca
    11041 taggtggtaa ataatgaaaa aagcagatat tttagtttta gactttggct ctcaatacac
    11101 tcagcttata gcaagacgct taagggaaca aggagtttat gcagaaattt taccttttaa
    11161 tgtaagctta gctgatatta aggcgaaaga accaaaaggt attattttaa gcggaggtcc
    11221 agcaagtgta tatgcaactg atgcgtattt ttgcgataaa ggtatatttg acttaaatct
    11281 acctgttctt ggaatttgtt atggtatgca gcttatggca catcattaca aagctacagt
    11341 agcacctgca ggacataaag aatacggcaa agcaaacata gaaattaaaa aagataacgc
    11401 tttatttaaa aatcttccaa aaaaacaaac cgtttggatg agtcattctg ataaagtaga
    11461 aaatttacct caaggttttg aagttttagc cacaagtgaa aatagccctt tttgtgtttt
    11521 tggaaacgaa gataagaaat tctttgctct acaatttcac ccagaagtac aacacagcga
    11581 atttggcaaa aatatcttaa aaaattttgc taaatatgct tgcaattgtg aaagtgtttg
    11641 gaatatgggt tcttttgcaa aaactcaagc agaaaaaatc cgtgaagaag taggcaatga
    11701 taaagtgctt tgtgctgtaa gtggcggagt agatagtagc gtagttgctg cacttttagc
    11761 tagcgctata aaagagcaag ttatagtagt ttttgtagat aatggacttt taagaagtgg
    11821 agaaaaagaa caagttgaat ttatgtttaa aaacacttta ggcatcgatc tcatcagcat
    11881 tgatgcaagt gaaattttct taagtcgctt agctaatgtc acagatcctg aacaaaaaag
    11941 aaaaatcata ggaaatacct ttatagaagt ttttgaagaa gaagcaaaaa aacataaaga
    12001 tgtaaaatat cttgcccaag gcacacttta tactgatatc atagaaagtt ctgttgtagg
    12061 tgcaagcaaa accattaaaa gccatcataa tgtagggggc ttacctgaaa aaatgaatct
    12121 taaactcata gagcctttaa aagaaatttt taaagatgaa gtgcgtgcct taggacttga
    12181 gcttggactt agcaaagaag tagtttatcg tcatcctttc cctgggccag gtcttgctat
    12241 acgcattatg ggagaagtaa atcgcgctag cttagaacta ttacgcaagg ctgatgtaat
    12301 tttacttgag gaacttaaaa gtacaggttg gtatgataaa acttggcaag cattttgcgt
    12361 acttttaaat gttaaaagcg ttggagttat gggggataac cgcacttatg ataatgcagt
    12421 ttgtatacgc gttgtagatg caagtgatgg tatgacagct accttctcgc atttacctta
    12481 cgaaatttta gaaaacataa gtcgccgtat catcaatgaa gtagaaggta taaatcgcgt
    12541 tgtttatgat atctcaagca aaccacctgc aactatagaa tgggaataat ccattttttc
    12601 tagctcttat ttttaatata aaatttttat aaaaataagg ctagaattta tttaagaaat
    12661 ttcaaggaag aaatatgcat ggaaaaatag ctatttatat ggattctaca ggacgtggaa
    12721 ccgttacaaa ctcagcaaat accttttttg actttaatcg ccaaatttgg aatgataaaa
    12781 aaagtatgcc aagtgttggt atgcttgtgg aatttagaac tctttctagc gaaaaaaaag
    12841 cagaagacgg caaactcgtt caaacaagca aaaccataac aggtataaaa ccttcaaaat
    12901 ttcaagaatt caaagaaggg gattttatca ctgagcatga tttttggaaa actgataatg
    12961 atgatgaatt agaagacttg caaaactcaa gaagaagtgc ttatataaca gaactctata
    13021 gaacaacaga ctttgacact atagaaaaaa ttcctctttc ttttactata cctcaagcta
    13081 tacaaaaata ttttgcccat gaaattttat ccgtagaaac gcttcaagcc aatctacaag
    13141 atgaaaagga aattccttgt atacttgatt atcttatact taaaagattt ttatttaaag
    13201 cttatgatac tttaattttt atggataata gcatagacca aacccaattt agcgcattaa
    13261 aaagcatcat gatgcattta gagaattcgt ataagcaaat gatggctgat caaaaaccaa
    13321 atatcactaa aatttttaac gaaacttttt tatctttgca gtgtcattac caagctttag
    13381 tagccaccat agatacaaga aaaaatcgtc tagcctcact tgaagcacaa atgaaaactt
    13441 tacaatctga aataaatctt aaaagcaatg cgaccgatgc agaccctgaa aaacttaaag
    13501 cacgacaaga aagattggct aaactacaaa aagaagcaga atactacaga acaacactaa
    13561 aaagacttga tgctataagg gaagattttt ataagaaaaa ttacaatatt ttcgaaaatg
    13621 cttttaaact ttcacgagaa aaactcttta aaaaaattgt cacaggttta aatctatgtg
    13681 caaccataat ggatgtcaaa atttggcact tatctttaaa atcatcaggg gttaaaaatt
    13741 cttattttac tatgagtaat atagaaaatt ctttctgttc tctttctttt gcagaacatt
    13801 acttaagtcg cttaaataaa tccgctctaa atccttttga tcaaaaactt ttagtgtata
    13861 ttcaaaaaat cacaaaagaa caaagaaaaa aatttttagt tgtcacatcg gatttagatt
    13921 tattatgcaa attaaaaatt gaaaactttt cacaaaatcc gtattattta gtaaaatacg
    13981 cacctaaaaa agtaaattat caatctttaa tgcgtgataa cacctttgat atagtctata
    14041 ttgatgaaaa acatgtttgg gaaaatgttg ccgatattat tttacaagga aagcattttg
    14101 acaaatcagg aaaaaccaaa tttaaattga tttaagacat agaaatttaa gctaaattaa
    14161 gttataattt ccttgcctaa acagtttgta gtatttaaag tgatccaaca catttttatt
    14221 aactgcgatt gtgtgattta ccgtgttctg tggcatcgtt tgagctttga aaaaagtgag
    14281 aagttgcagc ctttaaaaat tacctagcgg ttttctttga ctttttgggg tcaatctttg
    14341 ttaaacggct gtttgggttt aaaaggagat ataaatgaaa ataatgattt tgggtagtgg
    14401 tgcaagagaa tattctattg ctttagcctt aagaagagta gacaaaaatt tagagtttta
    14461 ttttgctcct ggaaatggcg ctaccgaaag tcttggaaca aatttaaacc taaaagatcc
    14521 agtagtttta gcaacctatg caaaagaaaa aggttttgat ctttgtatag taggaagtga
    14581 aaatttttta gctgaagggg ttgtagatat ttttaaacaa caaggacttg ctatttttgg
    14641 gccaagtaaa gctgctgcaa tgcttgaaac ctcaaaatct tttatgaaaa gctttcttaa
    14701 aaaataccgt atcaaaacag ccaaattttt aaacacaaat gacattgaaa aagcaaaaaa
    14761 ttttatatat agtttaaccc ctcctatagt agtaaaagcc gatggacttt gcgcaggaaa
    14821 aggtgttatc atagctaaaa ctcatgaaga agccatagaa gaaacggcta aaatgctgag
    14881 cggagaaagc tttggagatg ctggaaaact cgttgtaatt gaagaatttt tagatggtta
    14941 tgaattaagc atttttgcag tatgtgatgg caatgatttt gttttacttc ctgcagcaca
    15001 agatcacaaa aaattactcg ataatgatca agggccaaat actggtggaa tgggtgctta
    15061 cgctcctagc tctttggcaa atgaaagctt gcttagaaaa gttcaaaaag atattatttt
    15121 accaacttta gcaggtatga aaaaagaagg agcggaattt tgtggtgttt tatttatagg
    15181 tgctatgatc gttggaaata aaccttacgt attagaattt aacgttcgct ttggcgatcc
    15241 tgaatgtgaa gttttaatgc ctttaatcga agatccttta gaacttattt tagctgctac
    15301 tcaaagacgc ttaagacact caaaaatcaa aatcaaaaaa gaatttgcag taggggttgt
    15361 atgcgcaagt gaaaactatc cttacaaaag ttcaccaaaa agtgaaatta ctgtaaataa
    15421 cattcctgaa aactctcata tttcttatgc tggagtaagc ctagaagatg gcaaattaat
    15481 ggctgatggt ggaagagttt tagtttgcgt tggcacagga aaaagtatag aagaagcgca
    15541 aaaaaatgct tataaacttt gtgataatgt aaatttcaaa ggaaaacaat acagaaaaga
    15601 catcgctcat caggttctga aatgaaagaa aatttacaag accgcttaga gcgtgaaaat
    15661 ctaaaaatag caagttttgg aaaaagagtt ctagcttttt taatcgatga tatggttatt
    15721 tctttgattg tgtttatcat tttttatgat cgtctaatcc aagcaaaaga tttatttgaa
    15781 acaactcaaa ttgtaggaaa tttttacctt ggcttcatct tgcttcattt tagttatcaa
    15841 gcaattttta cttatcttta tggagcaagt ttgggaaaaa tattatgcaa aattatcatc
    15901 ttggatgaaa atcttcttga caaacccaat ctcattcaaa gttgcatcag gtctgccgta
    15961 agacaagtta gtgctatggc gtttatgctt ggatttgctt gggctttaag caatgattta
    16021 cgcaaagctt gggaggatta tctagcaagg acaatagtag tcgatgtggc gtaaattttc
    16081 cctattgcta ggaactagca tagctttaaa tgcagcacaa gttgatattt acgctcttga
    16141 tgcaaaaaaa gaaggtgata ttcttactgc gaacaatgat gttattattt tttctgattt
    16201 ttatttcatc actgccaata aagcaattta caatgaaaaa accggagatg ttgagctttt
    16261 tggcgatgtt aacatcctaa ggggacaaaa cgaaagatca cattctgatt atgctaaaat
    16321 caacctaaat tccaatcaag ccgattttag taattttttc ttttccaata acaatcttga
    16381 agtatggttt caaagcaaaa caagccatct aaatgataaa gtctttgaaa gcaaagtttc
    16441 agcagtttca agctgcaatg ttgaagatcc tgattgggaa attcgttttt caaaaggctg
    16501 gcttaaccgg gaaaccaatt ttgttcatct ttacaatgca agattatatg ttaaaaatac
    16561 cccagttttt tatctacctt attttggatt tagcgctgat actcatagac aaagcgggct
    16621 tttaatccca aaaatcgttt taaaaagtag cgaaggctta tactatgaac aacctattta
    16681 tatagccact caagaaaatt gggatttaga acttgatcca caaattcgaa caaaccgtgg
    16741 ttttggactt tattctactt taagatttct tgattctcca tattcaacag gagaattaaa
    16801 ttttggtgct tttagggaaa atagctccta ttttcacgat gaaaatttga aaaatcaaac
    16861 ccactatgga atagaactaa aatactcaag agatgattta atcaaatctt tactcagtga
    16921 taattttcaa gaaggcctat ggatagatgc aacctatctc aacgatgtgg attatttaaa
    16981 tttaggaagt agggattatc gagatcttaa ctcgcttgta acctccaaaa tcaattattt
    17041 tttagctgat gaaaacaatt tttatggagc ttatgcaaga tattatatcg acacatctaa
    17101 acttagcaac aatacaacct tgcaagaata tccaagcttt caatatcata gatttttaaa
    17161 taaccttttt gatgaacgcc tgcgttattc atttgatgct tcatttcata atttttaccg
    17221 acctgctggt tcttatgcaa atgagctaaa tttagacttg cctatctcgt atcacaacgc
    17281 tttttttgga gactttttac actttacttt tacagaaaga ttttatgctt cttttgtaaa
    17341 ttatagcaac gatcccgaaa gaaaccatga gcattatttc agaaacactc atgattttaa
    17401 tctctacacc gatctttcaa aagcttatga aaatttcttt catactttaa atttaggggt
    17461 gaattacatt ttaccaggag caaaatcagg taaaatcacg caagattatc ttgaagaata
    17521 cgacaaagaa aacgaacata caagtcttta tgctgtgcaa tatttctata acaacgaagg
    17581 acaaaaaaaa ctcaaacaca gaatttcact tgactatctc aataaacaaa atgaattcta
    17641 tgaacttgaa aatcttttaa cttattattt taatgaaaac atcaatctca acagcgaagt
    17701 gctttactct tatgagcaaa gtcgctttac caatgtcatc agccaaatag aagtcaatac
    17761 aaattcaaaa tttaattgga tgttttctca tgcttatcaa aacgatgagt atggaaaata
    17821 tagctttatt ggtacaagag caaattatat tgccacacct aattacaatt tatttggtgg
    17881 aatttggttt gatactcaaa gagctcatgc aaacatgtgg gaacttggct atacctacca
    17941 aagaaaatgt tggaactatt ctttaatgta tagagaaaga atcgatccac aactcacaag
    18001 tggtggcatc acagctaaaa atcaaagcgg agtttatttt attttcaact tctatccttt
    18061 aggaggagta aaatacgatt tctctttagc agaaagtgaa aacaaaattt aaaaaggatg
    18121 aaatttgcta aatattttaa aaaattttac gaatttatta tctggtaaaa aaggaaaaat
    18181 aatgcaatac agcatagaaa ttaacaaaaa tacagaaata tttgatatag acaaagtcgc
    18241 caaacaagct gccggtgctg ttttaatgag acaaggcaaa agcgttgttc tagctacagt
    18301 tgcaagagaa gaaaaacaag ttgaagaaga ttttttacct ctaaccgtcc aatacatcga
    18361 aaaagcttat gccgcaggaa aaatccctgg tggttatgtc aaaagagaaa ccaagccaag
    18421 cgatgcagaa accttaacag cacgcattat tgatagaagc ttacgccctc tttttccaaa
    18481 aggctatgct tatccgactc aaatcgttgt gatggttctc tcagctgatc ctaaagtaga
    18541 tttacaagta atgagcttaa atgccgcaag cgtggcactt tatcttagtg atatatctat
    18601 gaaagctcca gtatgtggtg tgcgtatagg aaagatagat ggaaatttca tactcaatcc
    18661 aaacaatgaa gagcttcaaa atagcaccct agatctctat gtagcaggtg taaaagatga
    18721 gcttttgatg atagaaatga gagccttacc tgatcaaaaa gaaaatgaaa tctttatcga
    18781 agctccttat gctgatgttt taactcaaac cacttcacaa aatatgaatg aacttagcga
    18841 agatgaaatt ttagaagctc taaatttagc tcaaaaagct atattaaatg gttcaaatgc
    18901 ttatgaagaa gcctttagca aacacaaaaa aaattctcaa atcgaactaa aaaatgagat
    18961 tgaacatcct gaaattttag cttttataga aaataatttc caaaaacaaa tcaaagaagc
    19021 catcaatcaa atggcaaaaa gcgaaagagc aagcgaacta aataaaatcg ctaaagaaat
    19081 tttaaatctt gaaatcacta aagactggag cgaagaaagt gtcttaaata ccttagctaa
    19141 agtcaaacgc aaacttattc gtgagcaaat tttaaatgaa ggcaaaagag ctgatggtag
    19201 aagtttaaac gaggttcgtc ctattagtat agaaaccaac atcttaccaa acgctcatgg
    19261 ttcttgtctt ttcactcgtg gacaaactca agccctagtg gttgcaacct taggcggaga
    19321 aaacgattct caaatgatag acttgcttac agaaaaaaat cctataagcg aacgctttat
    19381 ggtaaattat aattttccag gtttttcagt aggcgaagca agtcctatca aagctccagg
    19441 aagaagagaa ctaggacatg gaaatttagc caaaagagca ctttatccaa gtgtggatga
    19501 aaactatcct tatgtaatcc gcttagtcag tgaaatttta gaaagcaatg gctcaagttc
    19561 catggcaacg gtttgtggcg gatctttagc cttaaaagca gcaggagtgc caagcttaaa
    19621 acttgttgca ggagtagcca tggggcttat ctttgaagat aacaagtatg ctgttttaac
    19681 agatatcatg ggacttgaag atcatgatgg ggatatggac tttaaagtag caggaagcaa
    19741 agacggcgtt actgctcttc aaatggatat aaaactaggt ggaatcgatc aagaaatact
    19801 aaaacaagct ttataccaag ccaaagaagg aagaattcac attctaaata tcatggaaga
    19861 agccgccaaa gaaatcatag tcaatgaaga agttttacct aaacttgagc tttttagcgt
    19921 tgatccttca aaaatcgttg atatcatagg acaagccgga aaaaccatca aagaaatcgt
    19981 agaaaaattt ggcgtttcta tagacttaga tcgcgaaaaa ggtgaagtaa aaatagcagg
    20041 tagtcaaaac gaacaaatca aagccgcaaa agactacatc ataaacatca caagctctca
    20101 aaaaggaact aaaaaaggct ctaaagacaa agatatatca ggctttgaac ttgggcaaga
    20161 atttcaaggt attgttaaaa aaatcgctcc ttttggagcc tttgtggaac ttaaaaatgg
    20221 tgttgatggt ttattgcata gttcaaaaag caagcatctt aatttaagcg aaaaccaaag
    20281 cttaaaagtt aaaatcagcg aaattaaaaa cggaaaaatt tctgtggatt tgtgtgagtg
    20341 agcgaatttc taactcatcc ttttgagcct ttttttgaca aagattctaa aatcttaatt
    20401 ttaggatctt ttccttcggt aaaatcaaga caagatggct tttattatca acacccaaga
    20461 aatcgttttt ggcctatact agaaacactt tttgatgtaa gattagaaaa tatcacagaa
    20521 caacaagcct ttttaagaaa aaaacatatc gctctttggg atgtacttca aagttgcaag
    20581 ataaaaaatt cagatgataa aactataagt tatgcaaaag ccaatgattt aagcccgatc
    20641 ctttctcaaa ccaaaatcca agccattttt actactggac aaagtgctta taaatttttt
    20701 attaaattcc accctcgctt aaaagccata gctctaccct caacttctcc tgcaaattta
    20761 aatttttctt ttgaacagct tttacaaaac tatgaaataa tcaaaaaatt tacaaaataa
    20821 caaactaagc attacccccc ccccaagtaa aacaagaaaa aagctagtta atatctagct
    20881 tttgcgtgtt atccttgaat tcaaattcca ctctcttagc tccaaaacct ttagcaatag
    20941 cttctaaagt atccttagca cttttatgaa ttttgctttc taaattttgg ataagattta
    21001 aagacaagtc tttaacctca tctttggctt cttttatgag tttgttttta tcactttcgc
    21061 taaaactaat ccccgtacta ttgatagaat caggcagtaa aaaaggtaaa aatttagcat
    21121 ttttttcatc ataaaatttc atatctatga tgctgtgttt gtatctacac tctggcatga
    21181 tgatcttata agcatcgtcc cctaaaggca aaatatcaaa gtttttatcc cttaaatcat
    21241 acaagaaagt gatctcaaat tcaaaaatca aagcaatctg tctttcactc aaagaccatc
    21301 ctaaaagatt tttccaaatt ccattaaaag cgctatcttt tttagtgaca atctctttac
    21361 taaaaacttg aaaaacactt aattctccta tggatttaag ctgcatgata tcgctaaaac
    21421 tttgcgtgct tttttcttct attttagggc ttttatactg cctaaaaagc actacaaaca
    21481 aaagtacaag taaaatcatc actaaaacaa ataaaatcat ttccatttta aacctttcta
    21541 attttataaa ccttgatttg aaaagatata ttttttctca aacgctaaga aaataaaagc
    21601 attaatgata aaaatcaaac acacaaaagt aaaaacaaat tccacactaa aatgtgaagc
    21661 cataagccct ccgccaaaag ctccacaaaa atttcccaaa aattgacaag tttgattaaa
    21721 accaaaaatc acacttaaat ttttagcact cacacttttt ttaagcaagg cattcacaca
    21781 aggcaaaagc cctccaagtc ctacacctat aagtaaacgc acgaaaataa gcgtataaac
    21841 attacttact acagcctgca aataaaagca aattccacaa aatatcaaag ctccaaaaat
    21901 aatcttacta ggccctatct tatcggcgat ttttccaagt tttggtgcga aaaaaagatt
    21961 gctaatccca cttgcagcca ctactatacc cgcccaaaga gccaaatttc caccttgatg
    22021 aatttgctca acatagatac ttaaaatcgg catcactcca aaagtaccaa attgtatcac
    22081 aaaagtagtg ataaaaagaa cgatgataag ggttttgttt tctttcactt tttgagtatt
    22141 tttcttcgcc tctttttgaa tttttctctc atggatgaaa aaataaatcg tcacaaaaga
    22201 acaagcgatc aaaaaagcca ccatatcaaa aaccgcacta atactaaaaa attcagccac
    22261 aaagccacca aacaaaggcc caagcaaact tccacttata gaagccgtag aaagagttcc
    22321 taaagcataa gcgacttttt ctttaggtgc tatcacagcg ataaacacaa cagcagcaga
    22381 agtaaaaccc gaaattatcc ctgttaaacc ccgcacaaaa actacttcta aagcactatg
    22441 agcaaagcta agccataagg ttaaaaccga cattccaaaa cttgcacgaa gaagcatatt
    22501 tttataacca tactttgcac ccaaaaaagc ccacaaaggt gaaaaaacag ccataaaaag
    22561 tggagtgatc ccaaaagcaa gccctgagta aaacgctatt tcactcgtat caacatgtcc
    22621 tagttctttg atataaaaag gcaaaatcgg agcgatttga ctaagcccca tacttgtggt
    22681 aaaaacacca aaccaacaca caagcaaagt tctattgaaa ttttccatgg atttattgta
    22741 tgatattttt tataattttt aattaaaact caaggataaa aatgaaaaaa atactcttta
    22801 tatgcttagg caatatatgc cgttcgccta tggcagaatt tatcatgaaa gatcttgtca
    22861 aaaaagcaaa tttagaaaaa gaatttttta taagcagtgc tggaacttca ggagaacacg
    22921 atggagaagg tatgcactat ggcaccaaaa acaaacttgc tcaacttaac atagaacaca
    22981 aaaacttcac aagcaaaaaa ctcactcaaa agctttgcga tgaaagcgat tttttaatca
    23041 ccatggacaa ttctaacttc aaaaatgttt taaaaaactt caccaacacc caaaacaaag
    23101 ttttaaaaat cactgatttt agtcctagtc taaactacga tgaagtccct gatccttggt
    23161 atagtgggaa ttttgatgaa acttataaaa ttttatccct agcttgtaaa aatttacttg
    23221 tttttttatc aaaataattt aaaacaacta tatattactt ctcgtttact ttttaagctt
    23281 atacttctaa acgaaccgaa aaacattcat aagaaaaact ccttaaaatt acacgcctag
    23341 cttaaatccc tttagctagg cttttcttta gatgttttta tccttcggat ttaaaatttt
    23401 tactatttta agtgcttctt aagaaaaaac tccaaattta tgtgctacaa ttacaatgtt
    23461 ttattaattt ttgacaagga gaattctcat gaaactagtt aaacttagtt tagttgcagc
    23521 tcttgctgca ggtgcttttt cagcagctaa cgctactcca cttgaagaag cgatcaaaga
    23581 tgttgatgta tcaggtgtat taagatacag atacgataca ggtaattttg ataaaaattt
    23641 cgttaacaac tcaaatttaa acaacaacaa acaagatcac aaatatagag cacaagttaa
    23701 cttcagtgct gctatagctg ataacttcaa agctttcatt cagttcgact acaacgctgt
    23761 tgatggtggt actggtgttg ataacaaaac aaatgctgaa aaagggcttt ttgttcgtca
    23821 attatatcta acttatacaa atgaagatgt tgctacaagc gtaatcgctg gtaaacaaca
    23881 attaaacttt atctggacag ataacgctat tgatggttta gttggaacag gtgttaaagt
    23941 agtaaataac agcatcgatg gtttaactct agctgctttt gctgtagata gcttcatggc
    24001 tgcagagcaa ggtgcagagt tattaggacg tagtaatatt tcaacaacat caaatcaagc
    24061 tccttttaaa gtagattcat taggaaatct ttatggtgct gctgctgtag gttcttatga
    24121 tcttgctggt ggacaattca acccacaatt atggttagct tattgggatc aagtagcatt
    24181 cttctatgct gtagatgcag cttatagtac aactatcttt gatggaatca actggacact
    24241 tgaaggtgct tacttaggaa atagccttga tagcgaactt gatgataaaa cacacgctaa
    24301 tggcaattta tttgctttaa aaggtagcat tgaagtaaat ggttgggatg ctagccttgg
    24361 tggtttatac tacggtgata aagaaaaagc ttctacagtt gtaatcgaag atcaaggtaa
    24421 tcttggttct ttacttgcag gtgaggaaat tttctatact actggttcaa gactaaatgg
    24481 tgatactggt agaaatatct tcggttatgt aactggtgga tatactttca acgaaacagt
    24541 tcgcgttggt gctgacttcg tatatggtgg aacaaaaaca gaagctgcta atcatttagg
    24601 tggtggtaaa aaacttgaag ctgttgcaag agtagattac aaatactctc caaaacttaa
    24661 cttctcagca ttctattctt atgtgaacct agatcaaggt gtaaacacta atgaaagtgc
    24721 tgatcatagc actgtaagac ttcaagctct ttacaaattc taagaagctt tcaagtctaa
    24781 cttcaaggcg gggttttgct ccgccttttt ttatgcctga tttttaaaac ttaaatttat
    24841 ataaaaaatt ttcccaagct aaaacgcttt aggaaaatta agacttaaac caattagtga
    24901 ttttttcaaa aagccctttt tgctcttgat gcataccatc tttgatgcca aaactttcac
    24961 ttagtttttc taaaagttct ttttgttcat cgtttaaaga agttgggaat ttgatagaaa
    25021 tttgaacgat ttgatttccc atgcgagaac tatgaacatc ttttacccct tctttttcaa
    25081 gaacaaatct ttgtccatct ttagcaccct ttggtaaatt taaggtcgct tcaccgcgta
    25141 tggtgggtac ttttatactc tctcctaaga tagcttgagt aaaaaacact ggaaattcta
    25201 tatatatatc atcatcatct ctgataaaag tatcatcttc agcggcgatg atcttaacat
    25261 acatatcccc tctagtacca ttttttaaga tattaccttt agcattgaca cgaagcttca
    25321 tacctgtatc tacaccttct gggatattaa gctcgacact atctttgctt tcattataac
    25381 ccaaaccttt acaatcacta catttttcac tagctttttc tccaattcct tgacaatcag
    25441 ggcaagtttg tgcaaaagtg ataaaacctt gagaaacccc aacctgtcct ctaccttgac
    25501 actttggaca agtttgaagc tttccatctt tagcccctgt tccattacaa gttttacaag
    25561 agcatttata agtaaagtct atatttttct tacaaccaaa aaccgcttct ttaaaactta
    25621 attttaaatt aacgataaaa tctgaaggga ttttctcatc atttgaactt tttctacgac
    25681 gcgatgagcc aaagccttct ccaaaaaaac tagaaaatat atctcctaaa tcctcaaaac
    25741 caccaaaacc tgagctacta gaaccaaatc caccgccttt taaagcatct tttccgtatc
    25801 tatcataaat agctcgcttt tcatcattgc ttaaaacttc ataggcttca ttaacaagct
    25861 tgaatttatc ttctgcttct ttatcacctt ggtttctatc aggatgatat tttaaagcca
    25921 tttttctata ggcttttttt atggtttctt tatcagcatt ttgcgtgatt tcaagaattt
    25981 cataataact tatttccaca ttattccttt aaaaaattta aaattttact agaattttaa
    26041 ttttaaaaat tcaaaaatat aattttagca aaaataaaat caataattta tcaaatttta
    26101 aataaaatta tgtaaagatt ttaaagacta cataaaaatt tacaaggaca ctagaatgat
    26161 taatgtgttg atgatagaag atgatcctga ctttgcacaa ttattatctg aatatttagc
    26221 gcaatttaat attaaaatca caaattttga aaatcctaaa agtgctttaa atgtgggtat
    26281 tcaaggctat gattgtctga ttttagattt aactttacct ggaattgatg gtcttgaagt
    26341 ttgtagagaa atccgacaaa aaagcaatat tcctattatc atctcatcgg ctagaggtga
    26401 cttaagcgat aaagttgtgg ggcttcaaat cggtgctgat gattatctac caaagcctta
    26461 cgatccaaaa gaaatgtatg caaggattat gagtcttatt cgtcgcacaa aaagagttga
    26521 acacactaat aatgaaaata ttaactctgc tttcaaaatt gatgaaagaa gacatgagat
    26581 cacctatgaa gataaggttt taacacttac tcctgctgaa tttgaaattt tagaatacct
    26641 tatccaacaa cacggatata gtgtttcaag agaacagctt gtaagtcgct gtaaaaatct
    26701 aaaagataaa gattctaaaa gccttgatgt tatcatcggt cgcttaaggg taaaaatagg
    26761 agatagttca aaatctccaa aacatatttt ttctgttaga ggtataggat ataaactgat
    26821 aggatgacaa aaaattattc tattcatacc aaactgatta ttttatttgt tgttactttt
    26881 ttcttggttt gtgtgctttt tatcgttctt ttaaaaatag aagggaatac ctataatgaa
    26941 gaagaaagtt taaaacaaga aaatcttata aaaaatttac tcatctccta tgaaaacact
    27001 tcaggtgttg aaataggagc ttatcttgga aacagcggtt ttaacgctat acaaaatccc
    27061 aatcttgtaa aagctataag aaataatgga caatcacttt ttaaagcagg cggagagctt
    27121 tgtactcttt cttctttaaa atatcatagc aatctttatt ttgatgttca atgtaaagat
    27181 tttgatggct tgtatgaaga aaatactagt gatagggttt ataatctttt attgatagga
    27241 tttttctctt tttctttgtt ggttgttttt atgtattttt ctgtattaaa atccttagaa
    27301 cctttaaaaa aattaagaag acaagttgcc gaagttgcaa atggggaaca acctgatttt
    27361 ctagactatc aagaagatga agtaggcaag atcgcctttg aatttcaaaa agctttcaag
    27421 aaaaaccaag aattaatcca atcaagacaa cttttcctaa gaacaatcat gcatgagtta
    27481 aaaaccccta taggaaaagg gagaatcatt tctgaaatga tcaaagaaga cagacaaaaa
    27541 gaaagactta tcgctatatt tttacgcatg gattctttga tcaatgaatt tgccaaaatc
    27601 gaaaatttat tttcaaaaaa ctacaactta cactttaaac ctagtcgttt tagcactata
    27661 cttgaagaag ctaaagaaca ccttatgata gatgatttta ataaagttgt aaaagtcgat
    27721 ataagatatg acgctttaat caatgttgat atggaaattt tctctgtaat tttaaaaaat
    27781 cttatcgata atggcttaaa atactcaaac aatggcactt gtgagctttt ttgttgtaaa
    27841 gaatgtttta ccattaaaaa tccaggcaaa cctttagcag agcctataga gcattatctt
    27901 gaagctttta caagagaaaa acacaatcaa gtcaaaggta tgggactagg actttatata
    27961 gtttcagagg tatgtaaact gcataatttt gatttgattt atttttatga tgatggaaag
    28021 cattgcttta aaattttctt tggagataaa gaaaaataat ggtaaaaggc ctggaaaaat
    28081 tcaatgaact tgttgaaagt tttgcaaatt tacctaccat aggaaaaaaa accgccataa
    28141 ggcttgctta tcacctttgc ataaataatc aaatcgatgg tatgaaactc gcacacaata
    28201 tagaaaatgc tatccgcttt ataaaacctt gtgagcaatg cggtgcttta agcgaaaatg
    28261 agctttgcga aatttgtagc gataaagaaa gaaataaaaa cattttatgt atagttgaaa
    28321 gcccaaaaga tatactaaca ctcgaagaga gtcaaagtta caatgggcta tattttgttt
    28381 tagatgagtt aaatgaagaa aaacttgaaa aactaaagca aatcatactt aagctaaata
    28441 tctctgagct catttttgca ttgacacata gcattaattc tgatgcaacc atctttttta
    28501 tagaggataa atttaaaggc ttaaacctaa cttttagtaa aatcgctcaa ggaattccaa
    28561 gtggtgtaaa tttagaaaat gtggatttaa tctctttaaa taaagctatg aattttagaa
    28621 caaaaattta gtaattttta taagaaatat cggctaattc ttgcaaagaa aaatccgcaa
    28681 tcttttcata agcaaaacct tccttgctta aaaaatcaag taaagttttt tccatgattt
    28741 tagctccttg tataagctca tctgaaagct taaaactcat cgcttcaata cgctttggca
    28801 cacaagctaa gatgtgtgtt ttaggcaaat ctcctgcaag ttccatgtat tgtaaggttt
    28861 gaagcatttc tatttcatgg gcacttccac tccagctaat tttattaggc atagcatcat
    28921 aaggaaagaa aaatacatct cctatactcg caccttgcgc ttctatacag tctaaaacga
    28981 taagtctatc gtatcgagcg atgatatagc taagctgcaa agccaaagtt ccaccatcaa
    29041 caaaatctaa agtaaattca gaatgagtga atttgtagtt tttttcaagt tgtttgcaaa
    29101 gatgaacgcc taagccttca tccgcaaaca tgatattacc tattccaagg actaagaatt
    29161 tcaatgctgt tcttctttta caaatttata tccgctaata atagcatcca tagcaccatc
    29221 tttacctttt actgcgttaa aaatcgccat gtaaatatgt actggcacaa aaatcataat
    29281 tacccacatc aaaattctat gataagttct tacatcggcc aaaccgccca ttgcagcttc
    29341 aagcggtctt aaaatatgat ataaaagccc acctaagccc tcatggtaag tatgagtata
    29401 aagaataagc cctgtaagaa tgatacctaa tatcacaaga taaaagaaaa aataagttac
    29461 aaattgcaaa ggattataaa ccccttttaa atgcggatgt tttcctaaga aaatgtaaaa
    29521 ttttacttgt tctatccata atttgatatt aaaaatatcc catacacttc tgcgttcttt
    29581 tgcgcttacc ttatcgcaga aaaacaaata tactttaaaa ataatacaag cgattaaaac
    29641 aaaacccacc gcttgatgta ctaagcggta ttttgcttgc ataaaattta cgggttcacc
    29701 gttactaata gggctttgga acacatagga aagataatac cctgtgccaa taagaatcac
    29761 tatagcaata gctcttaccc agtgcgttaa acgcaaacct atgctaaatt catattcagc
    29821 ttttctttgc aatttttctt ctttgttttg catgaaagcc tccttataaa ttgacattca
    29881 ctttatattc acttagatta ttgcccttag tatccattac atgcaccgca caagcaatac
    29941 aaggatcata agagtgaatt tttctaatga tttcaagtgg ttgttttaca tcagcgattt
    30001 taagtcctat caaacattgc tcataacttc cacctacgcc atttgcgtct tttggacttg
    30061 cattccaagt agaaggcacc acagcttgcc aattttcaat aacaccattt ttaattctac
    30121 accaatggct taatgttccg cgtggcacat gccccatata gcgtcctttg tattctttag
    30181 aattatcgat cacataagga gcacaagtac tctggtctac ttttaaattt tcaactaaat
    30241 tattaaacgc ttttaaagca ttatttgcaa cgatttttgc ttcaatacaa cgagcagctg
    30301 ttcttccaag tgtgctaaat acagcattta aaggaagtcc tgtttctttt aagaactcat
    30361 ctaccacagg aacaacattt tgattacctt tagcataatt tacaacgata tttgctaaag
    30421 gtcctacttg cataggattt ccttcatagc gtggagcttt aatccagcta tatttaccct
    30481 tagtatcaaa cactttagaa tggacattat ttccatgatg atctacgctt tctccatcta
    30541 caagtcctgt ataatttgga tttgttttgc catcataagg atgtaaaggt tcattgtctg
    30601 cataccaaga atgagttgcc tcttcagtaa tcttatcttc ttctacttca taaaccttgc
    30661 ttaaatctcc atttttaata ataccacttt caaaaagcca ttcatctctt ccgatttgga
    30721 attctttaaa ggtataaaga ttatttaccc ctatatcatt taaaacactt gcttcatgtg
    30781 cataagcttt tcctgccatc acaagatcag gataatacgc acgattaaca aagtcttgca
    30841 cttcttggaa tttaaccata tattcaccca ttcttgcagg atcgagtaaa tccataacgc
    30901 aagttacacc accaacggtt aagctttgtg gatgtggatt tttagctcca aaaatcgcca
    30961 tacattgagc aatgattctt tgaattctta aacattctag atagtgagaa agaacgatta
    31021 aattttgctc aggacttaaa cgataagttg gatgaccata gtacgcatta gcaaaaggtc
    31081 ctaaatttcc tttatctaca aaagttttca gtctttgttg cacttcaaga agtttatctg
    31141 cacctgttgc ataaggattt ggagtgtatt taaaagcttc atcacttgct tttttaacat
    31201 cagcacttaa agcacttacc acatcagccc aatcaagccc atgaagttga taaaaatgca
    31261 caatatgatc gtgtaaaaat aaagccgcat tcattaaagt tcttgttaaa agcgcattta
    31321 aaggcggagt aatacctaaa gcattttcaa cagcaactat acctgcttta taatgtgaaa
    31381 aagtacaaac tccgcaaatt ctttgcgtca taaaacccgc atctcttgga tcacgccctt
    31441 ttactatggt ttcaatacca cgccacaaag tagagcctgc ataagcttct tttaccacat
    31501 tgttatcatc aacaacaact tcaactctta aatgcccttc aattcttgta ataggatcta
    31561 cgattatttt ttgactcatt tttattcctt atctttttgc atggaagata taactgcgtg
    31621 tgctgctata gcaacgcctg tgagtgtaag cacacctata ccaattttat ctgaaacact
    31681 atccgcaccc aaaccaaaaa cggtatcaaa tttacgacta gccataggct cttcaaaagg
    31741 tcccatagta tcccaaaaat taggctcaga acaacctata caaccatgcc ctgcttgaat
    31801 aggccaagaa gtgtgctggt taaatctctc tcttgagcag ttattaaaag tataaggtcc
    31861 tttacaacct actttataaa gacaaaaacc ttgttttgct ccttcatccc caaaagcatg
    31921 tacaaattca cccgcatcaa aatgtccgcg tctttcacaa agatcatgaa ttcttaaacc
    31981 ataagcccat tttggtctat tatacacatc aagtgctggt aactcaccaa ataataaata
    32041 atgaagtaca ttacccacta tatttttttc acttggagga cagcctggaa cattgatcac
    32101 agttttgctt gttactttgc ttaaaggctg cgcgttgcta ggatttggtc ttgcagcttg
    32161 aattcctcca aagctagaac aggttcctat agcaaaaatc gccaaagcat tttcacttgc
    32221 catttttgaa agctcatagc ctgtttttcc atgtgcacct atggttaaaa aatgctctgt
    32281 atcacccata gggataccac cttcaaccat taaaatgtat ttatttttat gcttttgaat
    32341 ggcactttct aaattttctt cagcttgcca acctgctgca gccatcactg tttcgtgata
    32401 ttctaaagaa atataatcaa aaatcaaact atcaatcgtt ggagtatcac ttcttaacaa
    32461 actctcgcta cagcctgtac actcagccat atgaagccac acaacaggaa gcctatcagc
    32521 aagctcagca gcttttgcca ccataggagt aaaactcgct ggcaaagcca aaaatgcagt
    32581 catagcacct gcccatttca taaaatccct tctagaaaaa cctgactttt ctaatgcttt
    32641 tgtaatacta tcattgtctt tcaaagaagg aagcttttca agagccgata aacgcgactc
    32701 tatttgatga taatcaatca ttatatttcc tttataacat gaaatttatt ctctataaat
    32761 aataaaataa agaaagttaa aataaagtta aaaacttact ctcataagta aatattagca
    32821 tcactcttaa ttaaagctta atcataagcc ttttttaagt ttgcgaatca aaaatcttgc
    32881 aggatgaata gcgtggatgt attttttttc taaacacaag ggttcattat ttatcaatgc
    32941 acacaaatac cttgccgcta aaacacttgt actaaaaccc cttgacccat gagcaaaatt
    33001 aaaatacaaa ttacaagaca ttttagctgg tttttgctcc ttattttttg tccataataa
    33061 agctttatat tcttctttat aaaacgcttc atcataagca tttccaacta tcataaagcg
    33121 atcactcgaa taagatctaa aacctacttt agaacctatg atttctaatt ttgtattttt
    33181 atccataaaa tcggctatat tttctatatt ttgtttatca tcttcttctt ttgattctaa
    33241 acttgcatta agcctatcat aacttgcacc aattacttgc aaatcatctt ttacagggca
    33301 aatataagcc ttagaagata aaggaaatgg ggtatctaaa aaaggtttta gatgtgtaac
    33361 ttgacctctt actttgctta atttcatctc atcataaaaa acaaagtctt ttgcatctgc
    33421 acccatagca taaatcaaaa ccgcataatc acttttaaca acatcatttt taaattttaa
    33481 actaaaacac ccattttcaa atttataagc ttgaaattca tgattaaaat atatacaagc
    33541 tttgcttttt tcaaaaagat ttttaaccaa tttttttgga aaaatcactc caccctcttc
    33601 taaaaaagct tgattttttg aaattttaaa caaaacattt tctctttgcg tgtcaaatct
    33661 ttcttgcatt aaatcattat gtgcaaactc caccacaccc ttaaattcta aatctaaaat
    33721 ttgtctataa aaacgacttg cctctataaa agaaagctct gaaaactccc ctaaatttac
    33781 cttaggcttt aagattaaag agcttaaaat tccactttca tttccacttg cacccttgcc
    33841 taattctaaa tgtttttcaa aaatatctat ttcaaaacct cttaaactaa gctcataagc
    33901 taaaacagca cttgatatac ctgcaccaat aatagctact tttttatttt ttaaagatga
    33961 aaatgttctt gaaaaatacg cttctttgtc tttaaactca agctcatttt ccaaataagc
    34021 tttaatcatt tctctttttc taaaaccttt ggttttttct actctaaagc catatttttt
    34081 taaatttttt tgcaaaaaac ttgccgaaga aaaggtgcaa atttgtgtat tttttttaga
    34141 aagccttgcc acttcaaaga ttaaattttc atcaaacatt tgcgagtttt tatttggaga
    34201 aaatccatct aaataccaaa catcagcttt aaaatccaat tcttttaaaa cagctatatc
    34261 ttcaaaaaca agatctaaaa aacaatcttc aaaataaaaa cgataaattc cttctttagc
    34321 cttaggataa aattttaaaa attgttctaa aagctcttta aactcttcat aaaattctag
    34381 tttttgataa atttctctta attgttcttt ttcgatataa aaagcttcta cgctaatata
    34441 aaaaagtttt ttaggacgct tagaaggggt agtttctaaa aagcgtttca aagtaagaaa
    34501 aaaatttaaa cctatgccaa aaccactctc tgcgataata aaattttctt gatttttcca
    34561 ttcaaaagaa tgagtgtaaa caaatttgct ttcatttaag ccatctttga aattaaaata
    34621 aaaatcatca aaatccaaag aaaaaggagt attatcctta aaaattagct tagctttttt
    34681 catcggttgt tataaaaata actctcaact ccatcagcaa tacccttaac caataaatct
    34741 tgaaaagctt tattggcgat tcttttgcct tcatttggat gtgtaatata gccaatttca
    34801 atcaaaattg caggcatttg cgcacctact aaaacccaaa aaggtgcttc tcttacaccg
    34861 ccatctacaa ttttatactt tttgcgtgtt tgagtgagta tatttttttg tacatcaatg
    34921 gctagtttat ttgaagcaac gattttttca cgatttaaga aatttaaaat actttgtttt
    34981 gagaaataat taatctcttc aaaatcccct tgattttctt tttctgctgc ctttttactt
    35041 ctttcacttc ttgcaggact taaaaagaaa gtttccacgc cttcgctact tttggctttt
    35101 gtggcatttg gtgctgcgtt agcatgtata gaaataaaca aatccgctct tttatcattg
    35161 gcatatttgg ttctatcacg aagattgata aatttatccg aacttctagt ataaagcact
    35221 ttataaccgc gttttttaag ttcatttcca agttttaaag ccgtacttaa aactatatct
    35281 ttttctttta aacttccttt tttatcactt aaagcaccgc tatcttttcc accatgcccc
    35341 gcatcgataa ccacaagctt tcctgatttg taatttgtat ttaaagtttt actagaactt
    35401 tgagttgctt ttttgtttgc attttgattt gtagtttgta tataaaaacc taaagtgaga
    35461 ttattattat ccaactcctt taaaagttta aattctttag gagcactcaa aaccacacga
    35521 acggtttttg gattgtattg agtaactgta atcacatttt gtccaaaagt aaagcttttt
    35581 ctattacctt ctaacacacc cttaaaactt acaacatatc ggaatttttg atctttggta
    35641 tcaaatactg ctatttcttt ttcatctaaa tcatcgctta aatttaacac cacagcatta
    35701 gaaattttat ccacatctaa aacatataaa ggttcttgat tttctttttc attattggtt
    35761 tttttatctt gtttttttgt ttctaaaact ttggttttaa tttctgtttt ttgatcttgc
    35821 tttttctctg aaattttact aacttgctca gtcttttttt ggctagtagt ttcttttgaa
    35881 aaaattattt tttcttcttt aaaagatata tcaataggaa ttttttcttt agcataaacc
    35941 actatgcgta tggttttggg attaaattgt gaaatcacta aacgatagtc atcaaattta
    36001 aactcttttt tacccccttc taaaacccca tcaaaatcac taataaaacg atagtttcct
    36061 ttttcgtcta aagcaaaact ttttaattga tccttatcca aatctgcatt tagttcaaac
    36121 tctacacctt ggtttgtttt acttgacttt aaaacataaa ttttatcatc gctttttgct
    36181 ttagaaacga tactgctctt tggtgcttgc gaagttttag aatttgtttt ttctgtattt
    36241 tttatttgtt cgttagatga ttttttttca tttttttgaa ctgtttttat aggttcaaaa
    36301 gttgattttt cagtgtcttg agaaatattt tgaaccttaa tatctttaat aacagccttt
    36361 cttaaagcat taatacttgt ttcacttata ccactttctt ttaactcatt agcatatgac
    36421 ttgtcatcta aatttaaagt atttgaactg ataatcaatc tttttaaaat ttcaatttta
    36481 gttttttcat cttcattaat aacactttgt atataaaggc ttttgagctg atggtgaaat
    36541 tttacttgca cttcactttt agaaccgata aaatttttat caaaatttgc aagttcattt
    36601 tcataaactc caaaaagagt tgtgaaaaca aatactaaaa atacaaaaat tttagccatt
    36661 attcaccatt aaccaatttt tccataagtt ctttaacact gataagctta tctaaacgat
    36721 atccatttgc acctgtaaag aaaagtcctg tttctttttt gcctgaccac gcatcaaaaa
    36781 gcctatctgc tatacaatac cctactttag tcgcctcttt tccacgtcca caaggcgcta
    36841 cacaattgct tatacaatta atctttggac ccattctttt atctaccaaa tttaaaagat
    36901 tggttctaac tccacgagca ggatagccca caggagattt aataagctct atatcttctt
    36961 ctttagaagc tagcaaaacg cttttaaact cttcactcgc atcacattca aaagttccta
    37021 tgaaacgcgt tcccatttga acaccactag cccctaaaga aatagcattt tctatatctt
    37081 ttttatccca aattccacct gcagcaatca cgggaaaaga cccccaattt ttagcctctt
    37141 ctaccacagg agcgattaat ttttctagct gataattcgg atctaagcac tgctcataag
    37201 taaaaccttg atgacctcca ctttttggcc cttctaaaac cactgcatca ggtaagcgat
    37261 tgtaacggct ttgccatctt ttgcaaataa tttttaaagc ctttgcagat gaaatgatag
    37321 gcactaaagc cacatcagga aaatctgcag taaattcagg taaatttgta ggaagtccag
    37381 cgcctgaaac aatcacatta aaaccaacct cacaagcatc gcgtgctatt cttgcataat
    37441 cattacttgc acataagata ttacacccca aaggtgcatc gccacaaact tttcttgcat
    37501 tattaatcaa agcttgcaaa cccttgcgtg agtaaaaatt ttcacttcca taaggcttag
    37561 cgtttaattc tttacttgca tactttcttt cttcataata tcctgttccc acagaagaaa
    37621 taatcccaag tccaccattt aaagaaactg cagaagctaa tctatcccag cttatgccta
    37681 gtcccattcc tccttgaaaa atgggatatt ttatagtatg ttttcctatt tgtaagggtt
    37741 gtaaattcat tcttttacct ttaattttgc aaattttctt ttacctattt gtaagatgta
    37801 ttctccttgt tctaaataca tttgctcgtc gctaactttt tgagaattta cacttactgc
    37861 attagcactg atgcttcttc ttgccgcaga agtagaactt tccaaaccac attcaaccaa
    37921 agccttagca agccaaattt ttccttgtat ttcaaactca gccatatcac ttggcaaagc
    37981 attttgagaa tgaattctat caaattcaga cttagcatta ttagcctctt ctttggagtg
    38041 aaaacgctct gtaatctcta aagctaaatt ttctttagct tttttaggat gtaaattgcc
    38101 ttgttctata tcttttttta tttgcgcaat ttcttctaga cttttttgac ttaaaagttc
    38161 ataatatcta aacatcaatt catcactaat acttaaaatt ttagcataca tatcattagc
    38221 tttttctgta acaccaatgt aattatttaa actcttactc attttgttta caccgtctaa
    38281 accttcgagt aaaggcatca taatcacagc ttgttctttt cctatgttat aaactctttg
    38341 aagctgtctt cccatcaaaa gattaaattt ttgatccgtt ccacccattt caatatcgct
    38401 ttttaaagcc acactatcat atccttgaag taaaggatac aaaaactcgc aaatcgaaat
    38461 aggactttgc tctttaaatc tcttggtaaa atcgtcacgc tcaagcattc tagctacact
    38521 aaaagttgaa gtaagctcta ctatacccgc ggctccaagt tcattaagcc aagtagaatt
    38581 aaacttaatc tgtgtttttt ctttatccaa aaccttaaaa acctgcgttt tataagtttt
    38641 agcattgatt aaaacttgct ctttatccag ctttttacgc gttgcacttt ttccacttgg
    38701 atcgccaatt tgtcctgtaa aatctccaat caaaaactgc acaatagctc catgtttttg
    38761 caaaaaagcc atttttgtta aaaccacgct atggcctaaa tgtaaatcag gcgctgtagg
    38821 atcaaaccct gcctttataa agaaattttc acccttttca taataatttt taattaaatt
    38881 ttctattctt tcttcatcaa taagctctgc acaaccacgc ttaacttctg ctaatatttt
    38941 ttttatatcc ataataaacc tttttaactt tctttataag catcatttaa agatgtaaaa
    39001 tctaaaattt tacaacgaga ttttaaccta tccttgacac tatctggatt gatattatca
    39061 ggaatttcca ttgtaatctc aaaataatct accgccgaat ttaaatcact tgataaatta
    39121 attgttaata aatttatctg cattttagct aaaaatgcca aaaattccgc taaaacacct
    39181 tttttatttt ccaaagaaaa aatcaattta taagatttag ggatgttaga atcccatttt
    39241 ataaatacca tatcttgatt attatctatc attttatcag ctctatcgca aagcttatga
    39301 tggacaatag cgttaccacc tttaacaaaa gctaaaacag catcacctct ttttggatgg
    39361 cagcaaaaat caaaatccac attagcgatt ttatggttac aatatagagt aaaatttcct
    39421 attttttgct ctttaatctc atatttatca aaccaatatg acttcttggc gtatttttta
    39481 agaccattaa ctatatcttt caaataagca ctatctgttg ctacttgtct aatacgtctg
    39541 actaaatttt ctttttctat ccaagtttca attctgtttt tatcaactcc aaaaataaaa
    39601 cttaacatat taatagaact tgctagatta atctctctga ttttttgctt gcaaaattcc
    39661 cttatacttg cttttgcttt tcctgtttta acactatcta tccaagaaca gcgataaaat
    39721 ttatcattgc tagtaaccac tcgcacaata tcgccatttt taagctcggt taacaaaggt
    39781 actttaatac gatttacata agcacttttt gcatgaagcc ctactttggt atgcacttca
    39841 taagcaaaat caagaaccgt tgcaccacga ggcaaagtga aaatttctcc cttaggagaa
    39901 taaactgcga catcttcaac ataaagacta tctttagcat attcataaag ctcaatagca
    39961 ttataatctt ctgcattttc aagattgttt atactttgca ttgaaatatc tgtaagccaa
    40021 tcaagacgag gcgcaaccac gctgccatct tctttatatt tccaatgcgc tgctatacca
    40081 aattccgcaa ttttatgcat atcaaaagtt cgaatttgtg cctctataat acttttagca
    40141 tcaaaaagtg tggtatgtat agtttgataa ccattttgtt taggcaaggc tatataatcc
    40201 ttaaaacgcg aaaccaaggg attaaaatgt gtatgtaaaa ttcccaaagc taagtaacaa
    40261 tcacttactt tttcaaccaa aattcttacc ccaagcaaat caagaacttc ttcaatacca
    40321 atgccttttc tttgcatttt aagataaata gaatagctat gtttaatgcg tttttgaatt
    40381 tcaaaactac cttgtctaaa gccattactc aaaaataaaa gttcgatttt ggaaataaat
    40441 tcatttaaac ctaattgcat ttcttgatta ttggaattga tataattgtc aataagctta
    40501 tactcatctg gcataagata tttaaaacta agatcttcca aataattttt tatgcttgaa
    40561 ataccaagtc tatgggctat tggggcatat acaactaaag tttcttcgct gattcttttt
    40621 tgcttatctt ctcttagaat atcaagagta agcatattat gcagcctatc gcataacttc
    40681 acaatcaaaa ccccaacatc ttcaatactt gctaaaagca tatttctgaa agtcaaggct
    40741 gatttagtta aacttttttt agattttgat gaaatgagat tatcttctct aatttctata
    40801 attttagtaa gtcctaaaac aagttttaaa acctcagaac caaactgctc tctaagttct
    40861 tcttcagtgc agtttgtatc ttcaatcaca tcatgcaata aagcagctaa aatattgctt
    40921 ttattttcac ttaaaaatcc aaccagtgtt gctactaaaa taggatgtac cgcataaggc
    40981 tctccacttt ttctaaactg cccttcatgg caaaatatac agtaatctac cgctttttca
    41041 agaatggcat catggccaca aatttcgaaa agcaaagcct tagcagcttc taaatcttta
    41101 caatttttta cattatcgat taattgttca agcaataatt cttcatcgat tggtttcaac
    41161 taaaccctct aaagtgattt tattttctgc aatttcatat aaagctatat ctgcaagttt
    41221 atttttattt ttatcaaagt ctaccaaagg ggttgctcca tttgccaatt gttccgctct
    41281 ttttgctacc actaaagaaa ggcgatatct atcattaccc attttttcca aagcttttgc
    41341 cgctacttct tctattcttt tatccataat tttctcctta attattttta acggttgaac
    41401 aaaggctagt atcaccttgt atgattttaa gtaaattacc ctcttcaaac atattacaaa
    41461 ccacaatagg aagtttgtta tctttagcta aagctatagc tgtatcatcc atcactttaa
    41521 tattatcttg catagcctca tcataactca aagtatttaa aaatactgca tcatcaaatt
    41581 gttttggatc tttatcataa actccattaa cttttgtagc ttttattacc atatctgcat
    41641 caatttccac agctcttaaa atagctgttg tatccgtagt aaaataaggg tttccagtac
    41701 ctgcagcaaa aaccacaaca cgaccctttt ctaagtgtct ttgcgctctt ctcataatat
    41761 aagtttcaca aaatgcttcc atctgaatgg cgctttgaac cctaacttca agtccagagc
    41821 tttccaaagc ttcttgtata gcaatagcat tgataaccgt agcaagcatc cccatatgat
    41881 ctccacttgt ccttttaatc aatccgccct tagcagcact tactccgcga ataatattac
    41941 caccgcctat aactatgcct acttctattt gattttttat aagttcttta atctctgaag
    42001 ctatgaattt taaaatagaa ttttctatac caaagccatt ttcacctgct aaagcctctc
    42061 ctgaaaattt tactaaaact ctttttctct cttgcattat ttctccttat ttaacttgaa
    42121 attatatttt aaattccatt aaatttagct aatttaagct aatgagttcc aaaggattga
    42181 tatgaaaatt tttttgagtt acttcaaaag taagatcatt ttttattcta cccactacgg
    42241 cacctttttt aatattctta ccaactttaa tattaggagc aatcttatct aaatgtgcgt
    42301 atattgtatg tatgccatta tcatgttcaa caataacaac tcgagctagc atactagtat
    42361 ctttagcaaa aactattttt ccatctagca catttttaac aactgcatcg cttttattgc
    42421 ttcttaaaac tacattctcg ttaaaaattt taagattgta aacaggatca acataatttc
    42481 caaatttttg cttcacagta aaagaatcca atggagctat ggtttttttt cctgtgtaac
    42541 gcttgactga acttccttga tagcttgaac ctaattgtct tattttttga ttatttttta
    42601 ctattttagt atcatttttg tttgaatttg catcttcttt atcattaata atttttaatt
    42661 gatttaatgt ttttctaagc tcttcttgct gagcttgtaa atcatcgagt ttttttgcat
    42721 atatagctcg atctgttttt tgtttattaa tttcgctaat ttgtttttgt tttaaacttt
    42781 gaagcttggc taattgagcg ttgtaatcct taagactttc attgattttc ttaatctgag
    42841 cttgtttatc atcaataagc ctgcttactc cctcataatc tttagaaatt ttaaaaattt
    42901 cttcatttaa aactttgttt aaacttccta aaatttcaaa agccataaaa ctttcttcac
    42961 tttcaatata gccttgaggg ataggtaaat cataagcaaa atctttagcc attaaagata
    43021 taagcttacc ttccatattt gatttacttt taagcaaatc ttcattttgg cttgtaaggg
    43081 tgtttaactc ttgattttga gccttagcac ttgcttcaag cttagaagtt tgtgaattta
    43141 agctttcaat ttgcaaactt agatctttca aacttttttc accatttaaa atatcgctag
    43201 ccaaatcttc aagtttttta tttaactgtt cttgtatgcg tttattttct tctaaacttt
    43261 ttgttttttc atttatagcg tttgctaaac ttatatcaac aaacaaaaaa aaacaaaaaa
    43321 agataagaat attttttctc atcttttaac cttaaacata accgtattta cacacaacaa
    43381 gcaaataaac aaagtagcta aaaaaattaa agtcaaatgt aaaataaaat taataggtgg
    43441 aaaaataata tctacagcct ttaaactttc ttggataata gaaagatcaa aaatttgggt
    43501 aaaaaaggca agtaaaataa caaaagcaat aaaacaatca accacaacca ccttataaag
    43561 cataaaagat ctaaaccaga acggagctcc aaataaacac ataatttcaa tacgatcggt
    43621 atgttcataa agccaaattc tcatctgttt taaaaacaaa acaaaggcaa gtaaaataat
    43681 gataaacaaa aataaccaaa aaacaaattt catcaaaata agcaaagagt atatcttatc
    43741 atgggttttg gaaaaagttt caaccttact aacacctaca atatttaaaa gttgattttt
    43801 aatcgaattt agttcatttt gatcgggtaa agaatttaat tttaaagtat aaaattttgg
    43861 cagagaatct tttaaaactt tcaaattctt ttcagaaaca tcatttttca aacgatcaat
    43921 taaatcctta ggatctaaag attcaagtcc agcaaaaaat ggtacttttg tttttactac
    43981 attctgatca agttcagttt tgctgacaac tataatatta taatctttat taacaagttc
    44041 ttcataatgc ttcaaagttg catttgtaat caaaataaat tca
//
LOCUS       DARGED010000003        41767 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.003, whole genome shotgun sequence.
ACCESSION   DARGED010000003 DARGED010000000
VERSION     DARGED010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 41767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41767
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.003"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..484)
                     /locus_tag="SFZ84_000115"
     CDS             complement(<1..484)
                     /locus_tag="SFZ84_000115"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8202288.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     S"
     gene            complement(485..1204)
                     /locus_tag="SFZ84_000116"
     CDS             complement(485..1204)
                     /locus_tag="SFZ84_000116"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG8202289.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSKIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(1204..1455)
                     /locus_tag="SFZ84_000117"
     CDS             complement(1204..1455)
                     /locus_tag="SFZ84_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202290.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(1459..2904)
                     /locus_tag="SFZ84_000118"
     CDS             complement(1459..2904)
                     /locus_tag="SFZ84_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG8202291.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            3044..4207
                     /gene="ftsW"
                     /locus_tag="SFZ84_000119"
     CDS             3044..4207
                     /gene="ftsW"
                     /locus_tag="SFZ84_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG8202292.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            4204..5232
                     /gene="murG"
                     /locus_tag="SFZ84_000120"
     CDS             4204..5232
                     /gene="murG"
                     /locus_tag="SFZ84_000120"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG8202293.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGASFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(5203..6357)
                     /locus_tag="SFZ84_000121"
                     /pseudo
     CDS             complement(5203..6357)
                     /locus_tag="SFZ84_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
     gene            complement(6365..7216)
                     /locus_tag="SFZ84_000122"
     CDS             complement(6365..7216)
                     /locus_tag="SFZ84_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8202294.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(7279..8169)
                     /locus_tag="SFZ84_000123"
     CDS             complement(7279..8169)
                     /locus_tag="SFZ84_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8202295.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSAAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(8166..8771)
                     /locus_tag="SFZ84_000124"
     CDS             complement(8166..8771)
                     /locus_tag="SFZ84_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8202296.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(8761..9906)
                     /gene="thiH"
                     /locus_tag="SFZ84_000125"
     CDS             complement(8761..9906)
                     /gene="thiH"
                     /locus_tag="SFZ84_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG8202297.1"
                     /translation="MQDYMQHLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(9909..10685)
                     /locus_tag="SFZ84_000126"
     CDS             complement(9909..10685)
                     /locus_tag="SFZ84_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG8202298.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMARAFSLAVNAGRAAFLAGVASVSEAKASSPLTGFLRD"
     gene            complement(10688..11491)
                     /gene="thiF"
                     /locus_tag="SFZ84_000127"
     CDS             complement(10688..11491)
                     /gene="thiF"
                     /locus_tag="SFZ84_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG8202299.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(11488..11679)
                     /gene="thiS"
                     /locus_tag="SFZ84_000128"
     CDS             complement(11488..11679)
                     /gene="thiS"
                     /locus_tag="SFZ84_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG8202300.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(11689..12786)
                     /gene="dapE"
                     /locus_tag="SFZ84_000129"
     CDS             complement(11689..12786)
                     /gene="dapE"
                     /locus_tag="SFZ84_000129"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG8202301.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(12791..13390)
                     /locus_tag="SFZ84_000130"
     CDS             complement(12791..13390)
                     /locus_tag="SFZ84_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG8202302.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGLNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG"
     gene            complement(13383..14084)
                     /locus_tag="SFZ84_000131"
     CDS             complement(13383..14084)
                     /locus_tag="SFZ84_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG8202303.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEEIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISIGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYIEDIINAID
                     KIALDIENFMKDGNV"
     gene            complement(14127..17966)
                     /locus_tag="SFZ84_000132"
     CDS             complement(14127..17966)
                     /locus_tag="SFZ84_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8202304.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKSSKALRVIDYAC
                     GAGHFLNTYANELKRYLTKDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPGSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIETENLKDNENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQTYATKA
                     RLVDMIDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKI
                     NNLCKINLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLE
                     VFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYI
                     SFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIEL
                     DRLEKEKEKILQKYLFS"
     gene            complement(17975..20185)
                     /locus_tag="SFZ84_000133"
     CDS             complement(17975..20185)
                     /locus_tag="SFZ84_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG8202305.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSDLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLVKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPAPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVKL"
     gene            complement(20175..20525)
                     /locus_tag="SFZ84_000134"
     CDS             complement(20175..20525)
                     /locus_tag="SFZ84_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202306.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(20518..21816)
                     /locus_tag="SFZ84_000135"
     CDS             complement(20518..21816)
                     /locus_tag="SFZ84_000135"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG8202307.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(21880..23853)
                     /locus_tag="SFZ84_000136"
     CDS             complement(21880..23853)
                     /locus_tag="SFZ84_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG8202308.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRVLMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSIYIIVI
                     SCLCIGFSYAKYYYYEIYKTKFDIFMFTLKDDNAKTILSIIYHDYPILKILALMLIFG
                     VFVVFLNLKILNLKLKPVNLRLFPLIALNLILIIVYVVALRGPFKHVAINVQNYSFSE
                     YSVVNDTMLNPIMAFSWALKQYKEEAALKAITPLKAQELKEKLFDYLHQSPINLKAEK
                     NHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANL
                     FFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIKNYLSILGVDE
                     IIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIALTISNHPPYKI
                     PQNDLPKLENIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVKQSPFKNSVII
                     AATGDHRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYA
                     LSLNNVKYLSVGGRNMLARPSDEKLEFGINDAVWIDKKGIYSGGKGYYFESNDTLKDM
                     NKAFNLDVYTKDFDKFYRELNLYQLAERLGISK"
     gene            complement(23865..24641)
                     /locus_tag="SFZ84_000137"
     CDS             complement(23865..24641)
                     /locus_tag="SFZ84_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG8202309.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            complement(24634..24807)
                     /gene="xseB"
                     /locus_tag="SFZ84_000138"
     CDS             complement(24634..24807)
                     /gene="xseB"
                     /locus_tag="SFZ84_000138"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG8202310.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            complement(24804..26261)
                     /gene="guaB"
                     /locus_tag="SFZ84_000139"
     CDS             complement(24804..26261)
                     /gene="guaB"
                     /locus_tag="SFZ84_000139"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG8202311.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            complement(26271..27632)
                     /gene="gatA"
                     /locus_tag="SFZ84_000140"
     CDS             complement(26271..27632)
                     /gene="gatA"
                     /locus_tag="SFZ84_000140"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG8202312.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKTNGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASTNLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            complement(27629..27739)
                     /locus_tag="SFZ84_000141"
     CDS             complement(27629..27739)
                     /locus_tag="SFZ84_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202313.1"
                     /translation="MLENPIPNSIIITTVAVVLAFSALAVFLIKKTKENK"
     gene            complement(27733..30486)
                     /gene="ileS"
                     /locus_tag="SFZ84_000142"
     CDS             complement(27733..30486)
                     /gene="ileS"
                     /locus_tag="SFZ84_000142"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG8202314.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKRLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESTPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLASNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            30585..31673
                     /locus_tag="SFZ84_000143"
     CDS             30585..31673
                     /locus_tag="SFZ84_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG8202315.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHGWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            31685..32110
                     /locus_tag="SFZ84_000144"
     CDS             31685..32110
                     /locus_tag="SFZ84_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8202316.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKFQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVIDETLRGKGIGQAFLKKIQIWAKNQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            32174..32794
                     /locus_tag="SFZ84_000145"
     CDS             32174..32794
                     /locus_tag="SFZ84_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8202317.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKV
                     KVDDFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            32794..33399
                     /locus_tag="SFZ84_000146"
     CDS             32794..33399
                     /locus_tag="SFZ84_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8202318.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCTIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            33524..34060
                     /gene="pgsA"
                     /locus_tag="SFZ84_000147"
     CDS             33524..34060
                     /gene="pgsA"
                     /locus_tag="SFZ84_000147"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG8202319.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            34057..35163
                     /gene="rseP"
                     /locus_tag="SFZ84_000148"
     CDS             34057..35163
                     /gene="rseP"
                     /locus_tag="SFZ84_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG8202320.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            35156..36022
                     /locus_tag="SFZ84_000149"
     CDS             35156..36022
                     /locus_tag="SFZ84_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG8202321.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQTTLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            36109..36486
                     /locus_tag="SFZ84_000150"
     CDS             36109..36486
                     /locus_tag="SFZ84_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG8202322.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            36495..37043
                     /locus_tag="SFZ84_000151"
     CDS             36495..37043
                     /locus_tag="SFZ84_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8202323.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
                     HEEKLKEIDIDAYDSDDTNLPF"
     gene            37054..37314
                     /gene="rpsR"
                     /locus_tag="SFZ84_000152"
     CDS             37054..37314
                     /gene="rpsR"
                     /locus_tag="SFZ84_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG8202324.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(37374..39749)
                     /gene="lon"
                     /locus_tag="SFZ84_000153"
     CDS             complement(37374..39749)
                     /gene="lon"
                     /locus_tag="SFZ84_000153"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG8202325.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(39766..40413)
                     /locus_tag="SFZ84_000154"
     CDS             complement(39766..40413)
                     /locus_tag="SFZ84_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG8202326.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETILIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            40574..40963
                     /gene="fliW"
                     /locus_tag="SFZ84_000155"
     CDS             40574..40963
                     /gene="fliW"
                     /locus_tag="SFZ84_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG8202327.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            40963..41694
                     /locus_tag="SFZ84_000156"
     CDS             40963..41694
                     /locus_tag="SFZ84_000156"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG8202328.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
BASE COUNT        14060 a         7340 c         5407 g        14960 t
ORIGIN      
        1 cgctctcatc tgcaaaagct tcaaaaagtt caagggtatt ctcgttttta tattctaaaa
       61 ttagaatatt tgtcatttca ttatattcta tattatgatc ttgaaaataa tttcttatat
      121 aagtaataaa taatttttca ttagagctta acttcatcaa aattctaccc gcaacaaaat
      181 caatcttgat aaacaacata ggcttaagca tattattttg ctcaaaaatt aatctaaaag
      241 ttttaaaatg agcatcttgt aaattctcta taccttcatt tgtgcttttg cgatattttt
      301 gatctaaaac ttttaagaaa taacggcgct gtggaatttc attttcttca aaaaaagaaa
      361 aaattttatt ttttcgtcct atgacctttg tgaaattttt ggtaatcaag tctttaaaat
      421 actgaaatac gctaatatca tctgtattaa cattgatagt ttctaaagtt tgcacgattt
      481 gcatctattt ctcccataaa acctcatttt caaaaagctc tttagtgcct tttaaaattt
      541 cattgggtgt ataatcggct ttataagata aagattgaca cttttttaca aaatacccaa
      601 gataaatata atctaagttc atttttttag ctatttgtat ttcattgagc aaagaaaatt
      661 tacccaaaga aaaatacgaa aaatcaggat cataaaaaca ataaatgctt gaaattccat
      721 cctctaaaat atcaatcaaa tcaacacaaa cgagcttatc ttctatataa aatgcaagct
      781 catatccaaa attcataaaa ccatcgacat aaagattata atactgttta aagcttaaat
      841 cataacgctt ccagttcttt ttttcttcca taaaacgatg gtatttatca tataaaaaca
      901 aatgttcatt gcttaaattg ggtgttctaa gtataacttt ggtgttaata tttttattta
      961 caacccttct ttcacttctt gaaaaattat attcattaac taaaattcta agacttaaac
     1021 attcatcaca atctttacaa atagggcgtg aaaaatacct accaaaacga cgccaacctc
     1081 gttttattag ctcattattg atttctttag ggcaattttc aatgtattta tactctattt
     1141 ttgaacgttt atcctttaag taaggacact gatcttcaag agtacaaaaa ccaatctcaa
     1201 gcattaaatt ttcttaatat ctgtattttt aataaattcg gaaaattcat cctgtagttt
     1261 ttcttgcttt aagaaaattt cttgcatttc cttatctatg tttgtttctt gatttttttc
     1321 gcgaatatct ttagctagtt tttctaaatt ttttacactt gctccactct tgcttgattt
     1381 cttcgctaat tttgaagtat tggtgttagc ttgcatttct tttttaatac ttttaagact
     1441 gtctaaaaaa tccatctatt attccctact ttctcgtatt tttttaagcg tagcagctat
     1501 tgcagctata acttcttctt tattttcttg atgacgatct tctgtttttt ctaataattc
     1561 ttgcatatgt gtctctatga aagaggtgtc taaatacccc cttctaaatt ctcttgtttt
     1621 tgtaatggca attaaaaatg gtattgttgt tctaatatca tcaatcacaa attccttcaa
     1681 agcacgctca agtttattaa ccgctaaatc ataacttgtt gctttaataa taagctttgc
     1741 aagcatggaa tcataataag gcggcacagt atagtcttta taaatatgac tatcaaccct
     1801 aacagatggt ccaagagctg ggtagtattc tcctattttt ccaggacttg gaataaaatt
     1861 tttccataca ttttcagcag taattctagc ttcaatagca aaacccctag gtttaatatc
     1921 gctttgttct aagtccaaaa tttctcctgc tgcaatacga atttgtctta caataagatc
     1981 aatacctgta atttcttcag taattggatg ctcaacttga attcttgtat tcatttccat
     2041 aaaataaaag cgattataat catcaagcaa aaactctata gttccagcat ttgtataacc
     2101 tacagcctta gcagctgcca cagctgtaac acccatggtt tttctaagat tatctgaaat
     2161 tccagggcaa ggtgctatct caattacctt ttgatgtctt ctttgaatag aacaatccct
     2221 ttcacaaaga tggataatat ttccgtagtt atctcctaaa atttgaaatt ctatatgtct
     2281 gggattaact acatattttt ccataaatac ttcatcatta ttaaagtatg ttaaagcttc
     2341 tcttttgcaa gattcaaagg cattttcaag atcttgttct ttatgaacaa cgcgaattcc
     2401 gcgtccacct ccaccacctg aagcttttaa aataacagga taaccaatct tctcagcaaa
     2461 aattttaatt tcttccatgc tataggaatt taatttttca gtccctggaa caataggtat
     2521 gccattttta gccattaact tacgagcgat atttttattt cccatcttat ggattacttc
     2581 agattttgga cctataaaaa taattccagc atcttcacaa gccttagcaa attcgtaatt
     2641 ctcacttaaa aatccataac caggatggat cgcatcagca ccacaagcct tagcaatctc
     2701 gacaatacga gcaacatcta aatatcctct tatagcatcc gttcctatgc gataagcctc
     2761 atctgcgatt tttacatgca aacattcacg atcaggctct gtaaaaactg caacactttt
     2821 aatatgtaaa tctctacaag cacggattac tctaacagct atttcagctc tatttgctat
     2881 gagaatttta tggatttgat tcataatttg ccttttttgt tatattttta ttgttaattt
     2941 tagcaaattt tccttacaaa aacttagcaa aaaatttaat ttattttagt tataataaaa
     3001 ctttttaaaa ttttaattcc aataaagaaa agttataatt ataatggttg ctgataaaag
     3061 attattttat ttaagttgta ttttaatcac cataggaata gtattttcat actctcttac
     3121 agcttttact gttctttttc ttgactatag cgagtttcat ttttttattc gtcagctttt
     3181 ttttggaatt agtggcatac ttataatgtt ttttatttct cgattggatc ctgataaagc
     3241 actttctaaa aaaattattt tagctatttt gattatttct tttatcttta tcatcatttt
     3301 gccattttta ccttctgcat tagcaacagc tagcggagga gctaaacgct ggatacgctt
     3361 aggcccactc tctatctctc ctgtggaatt ttttaaaata ggattgattt attttttagc
     3421 atggagctat acaaggcgta ttgatgatag taaaaaagct atcagacacg aggctttaat
     3481 tcttctgcct tattgtatct tagcttctat agttatagga tatatttata tcactcaaaa
     3541 cgatttagga caaagtgtaa tttctttctt tttgattcta gctttagctt tttttgcagg
     3601 agctagtaaa agactttttg cttttggaac tttaatcatt atgatgatag gtataatggt
     3661 aatttttagt aaccaaagaa gaattcaaag aatcgcttct tggtggggga atatacaaga
     3721 tgctttttta cctatgcttc ctgattggct ggcaaatgct ttaagagtaa gtagcaacag
     3781 cgagccttat caaatttcac actctttaaa tgctatagcc catggaggaa tgtttggcga
     3841 aggcctagga cttggaactt ttaaattagg ctttttaagt gaagtgcata ctgactttgt
     3901 tctttcagga attactgaag aaataggact cttaggtctt ggggttattt gctatattta
     3961 tctttggatg attttaagaa tttttagaat tgcaggaaga tgtgaagcta aacaagattt
     4021 tattttttgt tcaggcatag ccttactttt acttttttct ttctttatga atgcttttgg
     4081 tattatttct cttactccac taaaaggtgt agcggttcca cttttaagct atggaggaag
     4141 ttcaatgtgg gcaatttgca taggcatagg atatgtatta atgatttcaa aaaaggttaa
     4201 attatgacaa tagctttaac aggtggtgga actggaggac atttggccat agtgcgttgc
     4261 ttattagaaa gtgcgattaa aaaaaatata gaatgtgtat acataggcag tcaaaatggt
     4321 caagataaag cttggtttga aaatgaagta cgctttaaag aaaaattttt tttaagctct
     4381 aaaggagtgg ttaatcaaag caaatttgac aaaatcagtt ctttactcca caccttaaaa
     4441 ctctccaaag attgtagaga aatttttaaa aaataccaca tccaagccgt ttttagtgta
     4501 ggtggataca gtgcagctcc tgcatctttt gcggctttat tctcacattt gcctcttttt
     4561 atacatgaac aaaattcaaa aagcggctct ttaaatatgc ttttaaaacc tttcgctaca
     4621 aaatttttta gcgcctttga aaaagaaatt agcccttatc ctgtagcaga taaatttttt
     4681 gataatgcta ggattcgcaa agaattaaaa aatattattt tcttaggagg atcacaagga
     4741 gctagcttta taaacgaact agctttaaat ttagcaccaa aacttcaaga acaaaatatc
     4801 aaaatcattc atcaatgtgg aaaaaatgat tttgaaaagt gcaaaaaaca ttatcaaagc
     4861 ttaaatatcc aagctgatat ttttgatttt agtttaaatt tggaagaaaa aatgaaaaat
     4921 gcagatctag ctatatcaag agcaggtgca agtactcttt ttgaactttg tgctaatact
     4981 ttgcccacta tttttatacc ttatccttat gcagctaaaa atcatcaata ctttaatgct
     5041 aaatttttac aagatcaagc tttatgtcaa atttttatgc aaaactctat taatcttgat
     5101 gaatttttta agtcaatatt aaaactaaat ctagaaaata tttctacaag attgcaaaat
     5161 ataacccaaa aaaatggcgc agatatgcta atccaaaaag ctttatttga taatttgact
     5221 tttataagat aaatatccaa agatatttac taaaattcca acaaaaacta acatcaaaat
     5281 agcaaatgaa aaattttcaa atttgtcatg caaaaaacct ataatccatt gtccttgtgc
     5341 tgcaattaaa tatccaaaac cctgagctaa agcagaaagt ctcgctgcta tttgagcatt
     5401 agagcttttt tgtgcaataa aaagcaacgc aatgccaaaa actccacccc atggaaaacc
     5461 catgataaaa gcactgataa taatagaaat tttactatca aaaataaaga gcataccaaa
     5521 agcgatcaca tacatactgc acaaacctgc tatgtaaaaa gtatgtaaat tttgtcttaa
     5581 ttttcctaaa agtaaagggc caaaaagaga cactggagct gcaacaagtt gagcaaataa
     5641 aaccatactt gtagaaaatt ctttatcaaa tcctttttct acaacaattt gaacatacca
     5701 aaaaaacaaa gaataagcta aaaaactttg aaatcccata aaaagagtaa ttttctaagt
     5761 tgttaaattt ataaaaagat tgattttttt atgagctttt ttcttaatac gaaaaaatct
     5821 accattttta gcttgagaat agtaaactac taaagctaca aaagaaaaaa tagcccagaa
     5881 aaacatagct ccagctaaat caaatacact aagcaaaggt atagctaaag caatacctat
     5941 aatcgaagaa atactcaaaa caagactata aattcccatt atacttgcca ttttttttgg
     6001 aaatttttct ttaataaaac taggaagtaa aacatttgca attgctatac cacagcccat
     6061 tgctaacatt cctaaaaata agccatatac accaaaataa gaacgaataa tttcgcctaa
     6121 aaaaattaaa aaaattccaa aaacaatagc acgaatagga gaaaaatacc ccacaataaa
     6181 agaaatacct ccaaaagcta tcaaaggaag acttgtaagt atgcctgcta cggttgagtt
     6241 taaataatac ttatctttaa taatatcaat aataggcccc actgcagtaa ttggggctct
     6301 aagattaaaa gctacaataa taacattaat ccaaaatatc tttttaaaag aagccataaa
     6361 agccttattt gttaagttct actttgaata ttttaccttc tgccatctta ggaatccata
     6421 aaatattacc ttcaataaat atatctgcag gacctttcat caaaggaagt tcaagtttta
     6481 cagatttaac attatctaaa ttataaatat atccatttag attatttccc caagaactta
     6541 ccaataaacc atctttataa ggaactattc catcataaga ttctttttca tttttaatta
     6601 tactgagttc ttttgtattt aaatcataag ccattacaac accgccactt acaccatcag
     6661 gatgataacc agttataaaa agcttatgtt tttttctatc tagatataac ccatttggac
     6721 cgccaaattt tgctaaatca agttttaata attcatcata ttgcttagtt tttaaatcaa
     6781 cctttaaaat aagccctgtg ccagtatcgc taaccaaaag cgtattgtcg tctaattttt
     6841 ctatgtcatt taaaaagatt gcgcctttaa taggtaaatt aaaaatttct tttttagttt
     6901 taagatcaaa accgcgtaaa acatcgatat ctaccacata aagagttttt ccaatctcca
     6961 tcatgccttt tggtgcatta agatgggtta aaaatttata ttctagcact ttgccatttt
     7021 tatcaagctt agaaataaat ccatcattat ctttcgccaa aggttcaagt ttttctccta
     7081 cattagatac ataaacatag tttttatcta caaaaatact ttcagggctt ttaaaaccat
     7141 caaattcttg atattttaat tcacttgcac caagcaaact tccaagaagc gctaaactta
     7201 aaacatattt tttcatattt tctcctttat ttaaaaatat tttcattgaa ttatatttat
     7261 ttagataaaa aaaatgtgct agttttttga taaaaaatac aagttttttg ttttttgata
     7321 ttgcttagga gtttgctcat atttctcttt aaatctttca ataaaccaag ctgccgaaga
     7381 aaaagcgcac tcattagcta tttcattgat atttttttta gaaaatttaa gtaaaatctt
     7441 tgctttttgc aacctttttt catctaacca ttttttagga ctttgtccaa aacatttctt
     7501 aaattcttta gaaaaagttg ctaaatctaa tttcgcaaaa ttagacattt catttacgct
     7561 taaaaattct ctaccacaat actcaaaaag ttgggaaaga tcaaggcgaa attcttttaa
     7621 aattcctgat aaaaaactaa taaaataaat attcttattt aaaagcaaat gtaaaaaaat
     7681 ctcttcaaat ttcaaactca ctataggatc taaaatttgc gtattttctt caaaatgcgg
     7741 tgaaaaactt tccaaaattc cttgcaaaat cttatcattt tttacccaaa aaatttcata
     7801 gttttgaaac ttttgatcta gtttaaaaaa atctttatac ttataaataa gctcaattaa
     7861 aaatgcattg tcaaaaaaaa ataaataagc ttcataaact cctttactaa gtcctacatt
     7921 gcttaaagta tagctcccag cttttaaaaa caaagtttca taagagttaa tcttataatc
     7981 ttttgatgca gtatgtaaaa ttttatatcc tttgcgaaca aaagttaaaa gatgacttcc
     8041 tacattaaca aaagtagaat gcgaagtatc cgtttgtgta tatttagcaa aagtgcaaga
     8101 tttaattttt ttataattga caccttttaa ttgctttaaa tcttctggta aagaaagaat
     8161 tttattcatc gtaaattttg cctacattct aaaagatact ttttaagatc tttttctttc
     8221 attaaaattt cacgcatgca aacacctact acatttatat ctttaaaatt ttctatattt
     8281 tgagcattga taccgcctat agcataaagt ggaatttgac taaattcaag caaggatttt
     8341 aaaaaatcaa tccctttagg ttctaaaccc atcttgcaag aactttcaaa aatatgccct
     8401 acaaaagcat aatttacctt atagctcatc gcctctaaaa gctcttcttt gctatggact
     8461 gaagtaccaa gtatatgaaa atattttgtt aatttaggtt cttttcttag caaagaaagc
     8521 ggtgcgtgaa aataacgatg tcccaatttt aaacactccc tatcaaaaaa atgcaaaaaa
     8581 caagtcactt tttgctttgc gcaaatgctt aaaacttctt ttgctaagtc ataatactca
     8641 aattcgctta aatctttttc tcttaaaact atagcatcta ccttagcctt agcaagtttt
     8701 tcaatctgct ttaaaaagtc tatttctaca cattttctat cgcttatggc gatgattttt
     8761 ttatcccaca tagatactat cgctcatcac agcttgtaaa ttggatcttt taagcatagc
     8821 taaaatttca tctacgcttc tatcatctga aatttcaaac tgctcatcac cctttttctc
     8881 acccttatgc tcacctatac ccacactcac tcctgcactc attttagtag caccaagctt
     8941 aataacctca tctctaaaac ctattctttc acgacttgaa atggtaatgc ccgcaaaagg
     9001 caaaaagagt ctataagcac aaagtacttg caaaaggcgt ttttcactca catctttagg
     9061 atggatttta gcattattga taataggcct taaacgtggt actgaaatag aaatttcagc
     9121 atgcgaataa gcttgttgta aaaaatgtgc atgaagcgcc gtagcaagag cgtcttttct
     9181 aaaatcatct atacccaaaa gtgccgcaaa agccactcca cgcatacccg cttttaaagc
     9241 tctttcttga gcattaaagc gataaggaaa aatgcgtttt tcaccagcta aatgaatttt
     9301 agaatatttt agaggattgt aagtttcttg aaaaacagtc acataatcac aacccttttc
     9361 atgcaaaatt ttatattcat cttcattcat aggataaatt tcaacaccta caaccttaaa
     9421 atactctcta gcaatcttgc aagcatttgc tatatattct acacttgcaa actccctacc
     9481 ctcacctgtt agcattaaaa tttcttctaa accactttta gcaatggctt gcatttcttc
     9541 gtgaatttca gcttcattta gcttagctct tgcgatttta ttgccttttt gaaaaccaca
     9601 ataaacacat ttagaattac aataatttga caaataaagt ggggtaaaaa gagagataga
     9661 atttccaaaa tatttttgct tgactttagc ggatttaaag gctaattctt ctatgaaatc
     9721 ttctgctgca cttgaaagca aggcttttaa atgctctatg cttaaatgtg tttgatttaa
     9781 agcattttta acatctttag cgctaaattg actctcatca tagctttgaa cttgacttaa
     9841 aaccttattt aaaatttcgc tttttatttc ctgcatgtga ggtaaatgct gcatataatc
     9901 ttgcataatc aatcccttaa aaagcctgtt aatggggaac ttgctttagc ttcactcaca
     9961 cttgccacac ctgctaaaaa agccgctctt cccgcattta ctgccaaaga aaaagctcta
    10021 gccatcaagg ctatatcttt agcttcagct atggctgtat ttaccatcac tgcacttact
    10081 cccatttgca tagcttcaca agcttgtgaa ggacttccaa tacccgcatc tacaatgata
    10141 ggcaaatcaa tttcattaag caaaatttgt ataaattcct tagcacataa acctttatta
    10201 ctcccaatag gcgctgctaa aggcatgata gccgcagctc cagcatcacg catagctcta
    10261 gctgcgtaaa gatcagcatg catgtaaggt aggggcgtaa aaccctcttt agctaaaagc
    10321 tcacaagctt taatcgtttc ataattatca ggcagcaaat acctactatc gcttatcact
    10381 tctattttga taagttctcc acaaccaagc tctcttgaaa gccttgcaat gcgtaaggct
    10441 tcatcggcgt ttcttgcgcc tgaagtgttg ggcaaaagtg tgatattttt agggatataa
    10501 tcaagtatat tagcaatttc ccctgtattt gcacggcgta aggctagagt gataatctgt
    10561 gctttagctt cttctatagc tgattttata agctctagcg aatattttcc agaacctaaa
    10621 ataaatcttg aatcaaactc gtatttgcct atttttaatt tatcgttttt taaattttct
    10681 tgcattttta ctccttattt gctaaaagct ctaaaacaag gttactttga tgtcctgcgc
    10741 aaatatttac ccttggcgcc ataagtccat ttcccacctt agcaccattt accaaatccc
    10801 cgcacacata gaaattttta gcaatttttc ttgtttgtat gctgttgcta tcaccatagc
    10861 ccgcaagccc tgaagcgcag attaaaatac catctttgta aaatctatga aaattttgcg
    10921 ctatcattgc ttttgcgata gcactatcaa aggcttcaca aactatatct atatctttaa
    10981 acaaagattt taaattatcc tcatcgattt ttaaggtaca aatttcaacg ctgatataag
    11041 gattaatttc gctaatttgc tcttttaaag cttcggtttt aaacttgccc aaatcactta
    11101 cacgataagc ctgacgattt aaattactag gctcaatcac atcaaaatca atcaacttta
    11161 aataccccac tccacttctt gccaaattta tcgctatatg tgatccaagt ccgcctaaac
    11221 cacacaccgc cacgcgccca tttttaagtt tatcgtgaag ctttggtgta tgtcttgctc
    11281 tcatcatagc atctagtgcg tcttttggag gtaaagtatt tttttctata caaaaaagct
    11341 catcattttc atttaaagcg atattctctt ttgttgcaaa accattgata atccatacat
    11401 cattttcatt tttgctgata ttttcaaaaa attccaaact tgttttaaag tctgtatcaa
    11461 gttctttgcc attgaatttt actctcatca tccacctcct acaaaactta cgatttcagc
    11521 tttatcattt tcttttaaaa tcaaattttc aaattcactc ttaggtataa tctctccatt
    11581 taattccaag gcgataagtt ctattttcaa gcctttttct ttgataaaat ccataaattt
    11641 aagctctttt aactcaagct tttgtccatt gataatcatt ctaaaccttt aaaaattttc
    11701 tatcaagtct ttaaaaacaa ggcaaagttt ttcaaattct tctatactta ctctttcatc
    11761 aatagcgtga attctatcat tacaaacccc aaattccact acctttacac cgtattttgc
    11821 aaaatacctt gcatcacttg tgccgccttt ggtattaagc tctggcactt catgggtgat
    11881 tttttgaacg ctttcattca ttttttgaac gattttatta tcgatatttg tcaaaaaagc
    11941 ttcgcttgat tgttttagct ctaactcata gtttaaacca tgacaaattt tttctacata
    12001 actttttaca tcttctaagc ttgtatcagg ggaattgcga acattaaaca taagttttaa
    12061 atcatttggc gtaacattac acacccccat acctccgcga atatcagtta taacgatttt
    12121 tgaaggacta aattcagcac ttccaggatc aagatcaaaa cccgctaaaa gctttaaaac
    12181 tggcgcaaaa tcatgcacag gattgataca tttttcaggg taagccgcat gcccttgttt
    12241 tccacggatt aaaagttttc cattgataga accacgacgc cctattttaa tactatcgcc
    12301 gattttttta acgcaggttg gctcggcaac cacagcataa tcaggtagca tatctctttc
    12361 ttgcatccat tctaaaacag ccttagttcc atatatagct tcgccttctt catcacttgt
    12421 taaaataagg ctaagtctag ctcctttaaa atccgcattc tttaccgcat ctacaaaggc
    12481 tgctactccg cttttcatat cttgagcacc ccttgcatag ataaagcctt ctttttccac
    12541 aggcgcaaaa gcattattac tccaaccctc gcctgcaggc accacatcta catgcccacc
    12601 aaaagctaaa tgctcgcctt catctttaaa ttttttagtg agtaaaaggt ttttaatgcc
    12661 ttctttttct ataaaaaaag cttcaaaatc actcagttcc atagcgatga aatttaaagc
    12721 tccatcatca tttggcgtaa cagatttaaa ttttaaaagt tcgattaaaa attcttttgc
    12781 attcattttt ttatcctata aaagttttat ataataaatt aagagcaaaa tactctataa
    12841 ttatagctga aattatattg attataaaaa caacttttgc actaaaaaca tgactatatc
    12901 ttgccaccac aaaggctaaa gcacttaccc aaaaaagtat agccacaaca agccctaaag
    12961 tcatcaaata agcatgatca ctacttaaaa ccacacttgc agcactaagc caaaatccta
    13021 tcacaaaagg atttaaacca tttaaaaaag ctcctttaat ataacttttc aaaagacttt
    13081 ctttaaattc tttatgctct aaatttaagc tttctttctt ttttcttagc atcaaatacg
    13141 ccatataagt taaaaaacaa aaaccaaaaa tcgccaaaaa acgcataaaa atgacattgt
    13201 ctaagaaatt taaaagccca aattgaagca aaaaaagata aagcatatct atactaaatg
    13261 ctccaagtcc tacagctatg gaatttttaa aagcttttag tgcataagtt aaaatcaaaa
    13321 tatttacagg tccaaaaggc acactcactc caaagcccaa aaaaactcca cttaaaaaag
    13381 aatcaaacat tgccatcttt cataaaattt tctatatcaa gtgcaatttt atcaatagcg
    13441 tttataatat cttctatata gattttatca aaataccgct ctaaattcgc atctttttcg
    13501 tagatattta aaatactttt ttcgcacatt gaagcataac gccctacagg caaaaccgcc
    13561 ccacttgtgc ctatgctgat aaaaagcgaa gtttgattta acaaagaata aagcgtagca
    13621 taagcagggg cttgctcttc aaacatgact atattgtgtc ttaaatcctt gcttttgcat
    13681 tttgggcatt gtttatctgt gattttttca taacctatat taaaaatttc ttcgcatttt
    13741 aagcagcgaa gttcaggtaa aaagccatgc aaatgtacta catctttaca ccctgcacgc
    13801 tctagcaaat catctacatt ttgcgtgatg acaaaaaggt ttttacccca tttttctttt
    13861 aactgtgcga ttttttcatg agcatgattt ggctttacat tttgaagttg tgcccttctt
    13921 gcatcgtaaa aatcaagtac ttttttagga ttttttctaa aacctgttgc agagcaaacc
    13981 tccatcacat cgtattcttc ccaaagtcca tcattatctc taaaagtttt aagcccactt
    14041 ggagcagaca aacccgctcc gcttaatatc ataatgtttt tcatcgctaa accttataaa
    14101 atttacaaag tttagcaaaa aatgctttaa gaaaataaat atttttgcaa gattttttct
    14161 ttttcttttt ctaatctatc aagttctatt ttatattcat tgattttttt ctcaatcttg
    14221 tcagttatat ctgctatttg atcttgaaat tctaaagaag gaagtttaac tcttaatgct
    14281 tttattctat ctattgaagc tctaagtttt cttgaaaatc cttgtttttt accagcttca
    14341 tttaaaataa aacttatgta tttagcattt atttttgtat catcaaccct taatacccca
    14401 caatgatcag ttggataaaa ctttttattt tttggtataa atcccaccat ccaatctcca
    14461 tctatacccc acaaaacaga atcattatca taatcttgca aaatttcttt attaacaaat
    14521 ccaaatactt ccaacacatt tgcactataa acaggaattt gtccattttc aagcagctca
    14581 ttatttaaaa ctctttttcc aatacttagt ttaaaaattg gatttgataa agcatattct
    14641 ttaattgttt tattaaatga tgataaaaat tcactatcca aatttatttt acacaaatta
    14701 ttaattttat ctaaaataga atttagttca tattcttgat tgtcctctat aataccacat
    14761 ttttgaagca ttgctttgat taggttttga tactctttta tactcaaact taaagtatta
    14821 tactgctctt ctatcttttc acactctgct acgatttgtt tttgaatttc aagcggtggt
    14881 tttggaataa ccatattttg caagattcct aaatttatat tttgttgcga agttgtaata
    14941 acttcgttat ataattgaaa tttaaaataa tcaatggcat acataagata tttatttata
    15001 aattcttcat ttggaataat agctactata gcttgatttg ttgtcatatc ttcgcctaat
    15061 attccaactc taccaatagt tgcataaatt gaaacaacaa cagcaccttt ttgtatcatt
    15121 tttgcattag aattcttaaa accctctctt gtaatttttt ctttagtatc cataataact
    15181 tgacgattag agtaatcgct aattgttagc cacttaatat ccccattcca ataatttata
    15241 ttttttcttg atggtgttcc tcccatgaaa aaatctccac aaattttcaa tttaaccaat
    15301 gggtattgag actttatttc ttctctttga gtttttggat ttaaacttat agctttatta
    15361 aattccactt tttcaaaatc tatcatatca acaagccttg cttttgtagc ataagtctgt
    15421 aattcttgcg ggataacatc aagcgtattt aaaaaagatt tgtagattaa agtattaagc
    15481 ttagtctcat tttgtggatt gcctctttca aaaagtgggc tcaaataagg ctcgtgcaat
    15541 tcttttaaac cttcatcacc ttttctatta ctccactcat aacctaaaaa tttcttttgt
    15601 tcttttatat cacttgggga ttttatgatt aaaacttctt gattaagact tagactaaaa
    15661 taaagcaatt tatccttttc gattgcctga gcataagcta aaaaggcttt atcttctaaa
    15721 tcttgcttat ctttactttc tttataaatt ttagattctt taagtttttt ataatcactt
    15781 gtttgcctaa atgcattgcg ataatcttta aaggcttcta gctctgcaag tttagaatct
    15841 aaattaccat ttaaaaaatt gctataaagc tctttatcaa attttctaaa atcacaatac
    15901 gcacttagat aattttgata aaagttttca ttgtctttta aattttcagt ttctatgcgt
    15961 tctttaatca aactataatc ttgagaaata agatgatttt cttgtttaaa agtttctttt
    16021 ttgcgtaaaa ataaaataat cgtatttgtc cctgttgctc caaatgtttg attacctagc
    16081 tctacaatgg caataaaatc aaaattttga aataatattt ctcttgtatt tttataaata
    16141 gaatctttat ttaaaataga acctggtaag ataatggcag ctttagcatt atcatttaaa
    16201 atttgatttg ctcgctcaca aaaaaagcat tcgatagaat tatttgtttc tatgtttata
    16261 tcatcgttaa aaagtttata ggtattctta gatttatcac ttaaagtttc taaaaatcct
    16321 tttacagaat aaggcggatt tgctataagc aaatcaaaac tatttgattc tatttgtggt
    16381 tttgcttttt ctccttctaa attatttgta tttgctaatt caaaagaagc aagtgcatca
    16441 gcatataaaa tattgatttc attttgccca tacattgcac ttgatacctt agaaacctta
    16501 cttaagcgat actctttttc aataccataa atatttttat aatgctcttt aagctcatct
    16561 tttgttagat aacgcttaag ctcattggca taggtgttta aaaaatgtcc agcaccgcaa
    16621 gcataatcaa tcacccttaa agctttagag cttttgctta acatttcttg aagcggtaaa
    16681 gaatacataa taaattcaca aatttgaata ggggtaaaaa actgcccttc atcttgcttc
    16741 ataccttttt gtaaaaaaag ttcaaaaaga ttgcctaaaa attgatttgt agagttttga
    16801 gtaagcttgt aatttgcaaa aagctctact atttctttta atacaagtgc attttttaag
    16861 aataattctt tattatgcac ttctaaaaat gcaaaatcat tatttgaata aaattttaat
    16921 tctttgatgt aattttgcat tacttctttt aaagttttta tctttaattg cttaaagtct
    16981 ttttctatat cttcattaga tacaaaggta attttctctc ctaagaattc tttcatagct
    17041 tctttataaa gccacattaa tctatcttgc atatttgcat aagtatctgc cattacacca
    17101 aaatatccaa atttgagatt gtttttatta aaagtttcat cataaatttt gcaaagaaaa
    17161 atatttacaa gtttatcaaa ggcattttcc ttgcctgata tattatgctt gcgtaaaatt
    17221 tttgcaaatt cgtgatattt gccttcttct ttaagttctt taagattatc aaaagttgga
    17281 gtaatttcta aaattttata ggcattgaca tttgcttcaa aaataccttg tttaaaatat
    17341 tgcagttcat aactttcttt ccaagtttta aaaagttcta tattgttatt agatttttta
    17401 taagaatttt gcaattcctt ttcttttaga tattcttcgt tatcgtaagc ttgtatgatg
    17461 taatttttat attctaactt atcgctaaaa tcacttgtat aaagacaaag atattttaca
    17521 cctttttctt gctgaaaata agaaaaaagc tgtccgccat cttcttgcat tctattccat
    17581 tcttttataa attcactatt tttagaatct gtggttttac attctataat caaataagga
    17641 ttgttttcat tatcctttac taaaatatca gccttaccac cttttttatc cctgccaaga
    17701 ttccattttg gctctaactc taaatgttca gccttataac ctttttctaa aagtctatgc
    17761 acacattcaa aaactacaaa attttcaggg tgtgaaaaat tagaagtagt tttatcgtga
    17821 atttttattt cttttggata attaatactt tggtttttat aatctattaa aagagtgtaa
    17881 ttattgattg tttttacata attttcattt ttatttttaa agcctaagtt ttctaaaact
    17941 tgttttaaat tatcttttgt aatcatttat ttccttataa ttttaccacc ttagcaccaa
    18001 aaccaccttg attgatcggt gcgtcattaa agcccttgac acttttatga gttttcaaaa
    18061 actctcttac agcaaaggca agctttcctg ttcctatacc atggtaaact aaaacttcat
    18121 caaagcctgc aagcaaagca tctgaaataa atttatcaag ccttgaaata gcttcatcac
    18181 tcctaagccc gtgcaaatcc aagctaacgc taagattagt cggttttgcc acactaatgc
    18241 ttgtttttgg acttatttta ggtgcaggag tgcttttttt aagcagtttt aaaggcacac
    18301 gaagtttgat cccatcactt tcaaccatag catcgttttt agaaatgctt atgattttac
    18361 ccttaatttt ttcatatttt acaaaatccc ccacacgcaa ttcttcgttt tgctccatac
    18421 ttggcaagat gatttctttt ttaagttcat tggctttatt aagacttctt tgcttgtctt
    18481 ttatatcttt aagctgtatg gtttttttag cttcttctat ggctttgtga aatttaaatt
    18541 ctaaatttct caaactcgta cgaaattctt gttcattttt ttctttttgc tcttttaagg
    18601 aaagtaaaat ttcatcgact ttttgctctt ttttctcgac attttcaagc ttagctttta
    18661 gttctaattc aagattgata tttttaccca caagctcttc taaattttct ttatcctcgc
    18721 cataaagctt tttagcctcg ctaactaaat tcggcggaat ctgataacgc aaagcggttt
    18781 caaaggcata agattttcct atggtgcctt ttaaaaactc gtattttggg cgtgaaagct
    18841 cttcatcata taaggcagcg atgagttcaa cttgctcatt ctttgctaaa agcatggcaa
    18901 ggcgtttgtg gtgtgtagta atgatgattt taagattatt agctatgagt tttgaaatta
    18961 acacactata caaacaagcc gcttcttcaa aatctgttcc aagctctatt tcatcgatac
    19021 ctaaaagcaa atttttccta gaaaaaagtc tagaaaaatg caacattctt cctgcaaaag
    19081 ttgaaatgtc gtttttaaca ttttgcggat cttctatgat ggcatcaaat tctttaaaag
    19141 taccgatttt actttcactt gcttttatat gcataggcaa aagatgttta gctaaaaatg
    19201 ctgcgcttag catggatttt aaaagcatgg attttccgcc tgcatttacc cctgtgatga
    19261 ttaaaacttg ttttttaaat tccaaactca cgctttttgg attttttaag gcaggatgag
    19321 cgaaattttt aagcactaaa tccgtacttt gatcacacaa aacaaattca aaatcccttt
    19381 ttttagcaag caaaacccta gcactataat gatcaaaaag atcaaaggct gtattgataa
    19441 attttaaaaa aggtagattt tttactaaaa aagctgagaa atttttagcg tattcataat
    19501 aaatttcttc tttttgattt ttgatttttt ctatatcatt ttgcaaattt tcaacactta
    19561 aaggcacgat ataaaagcca ccgccattac ttctgcctat gatttttgct ttaatagcgt
    19621 gattaaaccc gcctcttaca agcaaggctt caagattgtt tataagatgg atttgtgtat
    19681 cgataagata aggcattaaa gcttttgtat agcaaaattt cttaaactca gctattatgc
    19741 tttcattttt taatcttaga gcggcattaa gatttacaag tctttcatct aaactttctt
    19801 ttaactcccc tttttcatcg aaattcaaac aaagctccaa agccccgcta acaaattcta
    19861 tcttttgtag ccaagagtct aaatttgttc ctagttttat tttttttaac ttttcaaaat
    19921 aacgaaaaat ttttacaaat tcaaaaattt catctaaatg caaaattcct tgcttactta
    19981 aatgaaccaa ggctttatca agattgctaa gctctggcat agtaggaaat tccacctcgc
    20041 aaagctcatg tatacgttta aaatgaagat cagaatctcc ttgcaaaaaa atctccttat
    20101 ctcttgcaaa aagagcttta aactcttcta aatagctgtt taaatcaagc tttgagatca
    20161 attcttcttt tgtatcattc atcatttaac ctacaatctt taatatctat gattaaagaa
    20221 ttaaaacttt gattattatc ctttgaaata aaacttcctg taccaaattc ataattaaaa
    20281 tacgccttag aaacattgat atctttacat aaaatatttt tattttgatt aaaagctacg
    20341 ataatatctg ttcttaaatg acttttttgt gtgttttcaa attcaaaaaa tactgctaaa
    20401 acaataaaaa tcacaagcaa aataccaaaa aaaggtttag tttttttgcc taatttttca
    20461 cgcaaagcaa aagtgattaa ggctaaaatt aaaataatta aaaaatataa aaaaaaccta
    20521 ctcatttttt tgccttaatt tattactgat atctcctgca ccaaaaccta taataagccc
    20581 ttcttcaaaa acttgcccct tagaagccac caaaaattta ccctctcttt tgatatcttc
    20641 tacaaataaa gccttaggaa aaactgcttt taaatcaagc cctataggct cttctcctgc
    20701 agcataaaca ggtaaaatta taagctcgtc tacaccttca aaagcctttg caaattcctt
    20761 taaatttgca gccaaacgcg tgtagcggtg gggttcaaag atagctgtga ttttcttata
    20821 tccgcctaat tttgcgtatt cttgtgctgc acttaaagtc gcttttattt cggtgggatg
    20881 atgaccataa tcatcgatta aaaccaaatt ttcatcagca tgtaaaatat caaaacgctt
    20941 tttaatacct tgataatttt taagcctagt tcttatcgtt tctatatcta agaaatttaa
    21001 agccgccaaa atcgccaaag acgcatcaag ggctaaatga tatcccatgc caaaaacctt
    21061 aaattcacct aaatctttca actcaaagct tgtaaaaggt ttgaaatttt ctatacgcat
    21121 ggtgcagttt ttgatatctt tgctcggata aagcttggtt gactcatttt tataattttt
    21181 caaaaactca tcttcagcat taatcacgcg aattttagcc gtatctaaaa actccgcata
    21241 agcatgatgg agttttgaaa cttcattgcc ataatgatct aaatgctctg cttctgcatt
    21301 agtaactata gccaaataag gatttgaatt taaaaaagaa ctatcgctct catcagcttc
    21361 aaaaacaagg ttttggcttt ctttataaat catatttgaa ccaaattctt ttaaaatcgc
    21421 tccgatgatc acagaagcat catcaagcaa agaagccaaa atacttgaag ttgtgctttt
    21481 tccatgtgct cctgcaactg caaaaacgcg cttatcttct aagataagag gtaaggcctc
    21541 cttgcgtgaa aggcatttaa tgcctaattc tttagcgtgt ttaaattcag gattttcttc
    21601 tttgatagca gcagaataaa taactaaatc tttgtttaaa atattgtctt tatgatgagg
    21661 gatactgacc ttaacccctt ctttttctag ttctttagtg attttactct ctttaagatc
    21721 acttccgcta attttaaaac ctttttcttt taaaaatctt gctaaagcgg aaattcctat
    21781 accgcctatg ccgataaaat ggatattttg catcatttaa acctttatac tttaaaggct
    21841 aaattttagc acttttttac taaaaagaaa atataaatcc tattttgaaa tgcctaaacg
    21901 ctcggctaat tgatataaat ttaactctct ataaaattta tcaaagtctt tagtataaac
    21961 atcaagatta aaagctttat tcatatcttt taaagtatca ttactttcaa aatagtaccc
    22021 tttaccgcca ctataaatac cttttttatc aatccataca gcatcgttga tcccaaattc
    22081 taatttctca tcacttggtc ttgctaacat atttcttccg cctacgctta aatacttgac
    22141 attatttaaa cttaaagcat aaagagttgg aaaaatatct ttatgagatc ctacacgatc
    22201 tttatcataa taaatattat cttgcaaatc cttaggaata taaagataaa aaggtacact
    22261 ataagcaaaa gctttttggg aatttaaatc catactcatt tcgcgtactc tatgatctcc
    22321 agttgctgct ataataacac tattcttaaa tggactttgt tttactttat ctagaaattt
    22381 tccaaattca ttatttgcat aagtataagc tttgataata ttatcttgtt tatctttttc
    22441 ataaggaagc atattaagca aagtttgtgg aatgttttct aattttggca aatcattttg
    22501 tggaatttta taaggtggat gattggatat ggtaagagca attataaggg tgttgtgtgg
    22561 atttttttga agcaagtcat aaactttttt atataaaaac tcatcagcta ctccataacc
    22621 attttcacta tcttttgctc cattatactc tttcattaaa atattttcat ctataatctc
    22681 atctactccc aaaatactga gataattttt aatattttgc caagatccat tacctgcact
    22741 tacaaaaatc accttatatc ctgctttctt ataaatagca ataggtgtta aatccaaata
    22801 agttttctga aatttgcttg tagaaatatt agaaaatgga cttacaaaaa ataagtttgc
    22861 aaaacttggt atagttccat tactagaact taaaaaacgt ttgaataaaa aatcttgctt
    22921 aaaatgttta tctaacgaac ccaaaaaatt atgttctgta tttgcaaaat cagccaaatt
    22981 aagcccaaaa ctttccatta agttaacaaa tacactagga tgattctttt cagcttttag
    23041 atttatagga ctttgatgca aataatcaaa aagtttttct ttaagttctt gtgcttttaa
    23101 aggtgtgata gccttcaaag ctgcttcttc tttatattgt tttaaagccc aagaaaatgc
    23161 cataattgga tttaacattg tatcatttac aacactatat tcgctaaaag aataattttg
    23221 cacatttata gccacatgct taaatggacc ccttaaggct acaacataaa caataattaa
    23281 tattaaattt aaagctatca agggaaataa tcttaaatta acaggtttta gctttaaatt
    23341 taatattttc aaatttaaaa aaactacaaa aactccaaaa atcaacatta aagctaaaat
    23401 ttttaaaatt ggataatcat gataaataat acttaaaata gtttttgcgt tatcatcttt
    23461 tagagtaaac ataaaaatat caaatttagt cttgtaaatt tcgtaataat agtattttgc
    23521 ataagaaaat cctatacaaa gacaagaaat aacaattata taaatgcttg aaaaaatgaa
    23581 ataaaaattt ttactatata ttactaactt attatttatt tttatattag aaaaaattaa
    23641 acttaaaaaa ccacaaagca agaatggtaa aaacgctgcg cttaaaaatc ttatatcatg
    23701 aaaaacacct aaaagataca ttaaaaagat ttcattttta tcactaatta aaccagtagg
    23761 gataaaagaa ttttgcatta aaacacgatt aatggtaaaa gttactataa ataatacact
    23821 aaaaataaaa atttgaagta aaatttttct catattcacc ttctttaaaa attcttaaga
    23881 attttatcaa aaccccaaag ttttcttgct tcatcacttt ttttaggctc tataataagc
    23941 atttcttctt cagaacccaa tttactttct atctcaccaa aagcattaat aaacaaagta
    24001 tcgccgtaaa aattccactc atcttttgtt ttgcctatgc gatttactct taaaatgctt
    24061 gtagaattta aaaaagctct tgtttttaaa agttcttccc atctttgttt gctttcaaag
    24121 gtacaagcac taggaacgat aaccaaatca atttttttcg ccataatctg ttgccaaaaa
    24181 atatcaaaat gtgtctcaaa accaaaaagc aaagcacatt ttaatttttc ataattaaaa
    24241 gtaaaaattt ttaattctga tggagttttg ttgctgaaaa atttttcttc attccaatgt
    24301 tcataaggca ttaaaatttg ctgttcataa cttttcacac catttggagt aacttttaag
    24361 caaagttttt tataactttt agcttcaacg cttacataag gagcgatgat ttctaattcg
    24421 tattttttag caagtttaat caagctttct tttttagctt cgctttgttc ttttatcata
    24481 ttttttggca tatgcaaaag ttctgtaaaa aaactgttga tcacatattc tcccaaaact
    24541 actaaattta ctccattgtc ttttgaagct ttaagataat aatcaagcct tgattcactt
    24601 aaagctaaag ttggaaactg taaagctgct attttactca tcaatttgct ccacttctaa
    24661 ttttgctttt tcaagctcaa gtcttgcttt tttgatactc tctaaacctt ctttataaat
    24721 ttttacactt tcatctaagg caagctcttg attatttaat ttttccaaag attcattagc
    24781 gtgttttaaa ttttcttcaa aactcattga tgattaacct tgtagtttgg tgcttcatga
    24841 gtgatagtaa catcatgcac gtgactttct ttaagtcctg cagtggtaat ttcaacaaat
    24901 tcggctcttt tttgaaaatc ttctatatct ttagccccaa cataacccat agaagaacgc
    24961 aaacctccta aaagttgatg caccacgctt cttatacttc ccacataagg aacacgccct
    25021 tctatacctt caggaacgag tttatcttga gcagtacctt gctgaaaata tctatccgaa
    25081 cttccctttt gcatagcacc aagtgagccc ataccacgat aagacttata ttgtcttcct
    25141 tgataagtaa aaagctctcc tggactttca tctgttccag ctaaaagcga tcctatcata
    25201 acagaactcg cacccacagc taaagctttt gcgatatcac ctgaatattt gatcccgcca
    25261 tcggctatca caggaacgcc aaatttattt gcttcttcta cgcattcatc aatggctgaa
    25321 atttgaggca cgcccacacc tgaaacaata cgtgtagtac aaatacttcc tggcccaata
    25381 cctactttaa ccgcatctac tcctgcttca caaagtgctt ttgctgcagc tgcagtggcg
    25441 atatttcctg cgataagatc taaatttgga tatttagcct taattgcttt tactgtatca
    25501 ataataccct tagaatgccc atgcgcagaa tcaagcacaa caacatcaac gcctgcttca
    25561 actaaagcat ccacacgatc catttgccct actcctatag ccgcacccac gcgtaatctt
    25621 ccaaaattat ctttattggc atcaggatat tctttgcgtt ttttaagatc ttttatagtg
    25681 ataagtcctt ccaagcgtcc ttgttcatcc actataggaa gtttttctac tttgttggta
    25741 ctgaaaattt tttccgcatc atctaaagta caaccctttg gagcagtgat taaaggcatt
    25801 ttagtcataa cattttcaac caaatttgaa aaatcactct caaatcttaa atcacgattg
    25861 gtgagtatgc ctattagttt cttatcttca tctactacag gaacacctga aattctatac
    25921 tctgccataa tttctaaagc ctccgcaaca cttgccttag gacttacaaa aataggatcg
    25981 ataatcaccc cgctttcgct ttttttcact ctttttactt ctctaacctg cgaggctata
    26041 tccatatttt tatgaatcac tccaagtcct ccaagtcttg ccatcatgat agcagctctg
    26101 tgttcggtaa ctgtatccat agccgcagag attaaaggca tatttaaagt gatatttttt
    26161 gttagtttag tgtgaatttt tacttcctta ggtagaactt cagaataccc aggacgcaat
    26221 aatacatctt caaaagttaa agctcttttt acaattttca tctttcatcc ttaatgttta
    26281 atcatttgtt ctaaacttaa agccccatct aacaaggttt gttcatcata agctttgcaa
    26341 atcagttgtg ctgatatatt aagcccttct ttatcttttg caacaggcac actaatgcct
    26401 ccaagtcctg ctaaatttac agagatagta taaacatctt ctaaataagt ttgcataggg
    26461 cttttttgag tatcaaattt aaaagccgtt gtaggagtta caggcataaa aataagatca
    26521 caatcttgca aaatttcttc atattttgcc ttaataaaag ctctagcttt ttgtgcttta
    26581 atataatacg catcataata tccactgctt aaaacaaaag ttcctaacaa aattcttctt
    26641 tttacttctt ctccaaaacc ttcgctgcgt gtatttacat acatttcttt taaattttgg
    26701 atattttcag aacgcttgcc ataacgcacc ccatcataac gacttaaatt tgtacttgct
    26761 tcagctgttg cgatgatata atacgccgca atatcaaact tagaatcaag caaattttta
    26821 tatacaatct catgtccatt agcttttaac atatctatgg tttttaaaag tgcatttttt
    26881 acttcactat ctgcatcatt gacataattt tcaatcactg caatttttaa ttttttattt
    26941 gcatttaaat ttggagcggt tttgataaac tcgatatttg cactcgtgct atccattttg
    27001 tcatatcctg cgatcgcatc atataaaatt gccgcatctt ctacattttg cgttaaaacc
    27061 ccgatttgat ccaaacttga agaataagaa gctaaaccat agcgactcac tcttccataa
    27121 ctcggtttaa atcctacgca accacaaaaa gctgcaggct gacgtacaga tcctcctgta
    27181 tcagaaccca aacttgccaa agccaagcca cccgctaccg cagcagcact tccgccactt
    27241 gaaccacctg gcacacgctc aaaatttaaa ggatttaaag ttttgccata ataagaactc
    27301 gctgttgaac ttcccatagc aaattcatcc atattacaac gcccaaaagg agaaaaacca
    27361 ttagttttta aattaacaat cacacttgca tcataagggg cgatataacc ttgtaaaatc
    27421 ttactcgcac tagtaagctc ccagcccttt acgctgatat tatcttttat agctacaggc
    27481 acaccttcac ctgaaacact taagtcttta tctaaaaatt gttcgatata agcacctatt
    27541 tttttttctt tttttgcttt ttcattgagt tcttttttta aattttcaag ttcttctttg
    27601 gagtatttta aagcttcttt taaagttatc atttattttc ctttgttttt ttgatcaaaa
    27661 atactgctaa agcactaaaa gccaaaacca ccgctacagt tgtgatgata atgctatttg
    27721 gaataggatt ttctagcatt gaatcccttt taaaacttct tcacatctta aacaaggtgt
    27781 ttcttcatct ttactttgaa gtttccaaca tcttgggcat ttacaaagtg aagctttggt
    27841 gattttaaat ttctcattct ctacttcaaa ttcagccaaa atttcttcat tttcattgct
    27901 gatttgactt accataaacc aatcggctaa ttcctcattt gggaatttat taaaactgat
    27961 gtttaaattt aattccaaag tagatttgat gattttatct tttttaagta tatcaatttg
    28021 ttcaaaaaat ttctctctag cactcattaa aaatgtatca tctataccaa aatcataatc
    28081 aaaatcttga gttaaactta gatcaaatac atcttttgca tcacctttga ttaaaacatt
    28141 agcatgttct aaagcctcat ctacactata gcttaaattt gaagcaagta aatttaaaag
    28201 ctcttttgct atcaaagcca tagccacttg agcggatttt cttctttgag cattttcgct
    28261 atcacaataa agtctatctt tactgatatc aagataaatc ccacttaaat ccgcacttaa
    28321 aaaatttaaa agcaaactaa aacctttagc aaattcataa gcaaaaaatg cctctttgct
    28381 tgctttaaaa actttagttg cacggcttaa tatccattta tcaataaagc taaattcttt
    28441 aacttctaaa tcttttaagt catttgtatt ggcaagtaaa aatcttatag tgtttcttat
    28501 tttgcgatat tgttcaccca cttgttttaa gatattgtct gaaattttta aatcacttga
    28561 ataatcactt aaaagtatcc aaagtcttaa aatttcaact ccataggttt ttgctacata
    28621 ttcaggagca atcacattgc ctttagattt agacattttt tgcccttttt catcggtggt
    28681 aaaaccatga gttaaaatgc tttcataagg tgtgctttca ttgatcgctg tacctacaag
    28741 caaagagctt tgaaaccaac cacgatgttg atcgcttcct tctaaataca tacttgctct
    28801 tttttctcct gcgtcataaa gtccgctatt taaaaccgca ttaaaagtac ttccactatc
    28861 aaaccaaaca tctaaaatat catatacttt ttctaaattt tcagcgttgt attttgaatt
    28921 tgtaggaatt aaatctttga tttcaaactc ccaccacgca tcagcgccgt gtttttcaaa
    28981 aatagccgct acaaagtcaa aaagttcatc atcaaaaatc acttctttag tgtttttatc
    29041 cctaaaaaag gctataggcg ttccccagtc cctttgtctt gaaatacacc aatctgggcg
    29101 attttccacc atagaaccta ttctttttac cccactttgc ggataaaagg ttgtttttaa
    29161 aagttgttct tttgcacact ctcttaaagt ttttccttga agttttggtt catccattaa
    29221 aataaaccat tgtttagtag ctctataaat cacaggctta tgcgttctcc aacaaaatgg
    29281 ataagagtgt ataaatttag aagaatgtaa aagtttttcg cctaaaagtt ctaaaatttt
    29341 ttcattggcc ttaaaaatat gaagacctat aaactcttca agcaaatgag aaggcaaaag
    29401 ccttttagct cttaaagttt catcataaca tccactatca tcaacaggca ttaaaacctc
    29461 aatgccatat ttcaaacaag catagtaatc atcttcgcca tgtcctggtg cagtatgtac
    29521 aagtccactt ccaccatcca tcaatacatg ctcgcccata attaaaacag attttcttcc
    29581 atttaaagga ttgatagctt caagtttttc aaattctttt gcgtttagtt ctttttgaat
    29641 ttctccactt gtaagtcctt tttctaccat acttttaagt aaagcacttg caaaaatcaa
    29701 accctctttg gtgatcacat aattttcatt aggatttaaa gctatagctt gattagccac
    29761 caaagtccaa ggcgtagttg tccatatcac tgcgcttgct tttgaaacgc ctaatttttc
    29821 gcaagctttt acatctaaat caaaagccac aaagatagaa taatcttctt tatcttgata
    29881 ctctacttca gcttccgcta aagctgactt tgccgcccaa ctccaaaaaa caggcttaga
    29941 acgctcgcaa agtaagcctt ttttagcaat ctcgcataaa gttctataaa tcgctgcttc
    30001 aaactcaaat ttcatagtta aataaggctt atcccaatct gcaataatgc ctaaattttt
    30061 aaattcttct ctttggatat ctacaaattc actcgcatgt tgtctgcaaa actcacgaat
    30121 ttctttttta cttaagcttt ttttcttttc tccaagcttt acttctactt gttgttctat
    30181 aggcaaacca tgacaatccc accctggagt aaaacgcaca ctctcacctt taaaataatg
    30241 cgttttgata atagtttctt ttaaaatttt atttaaagca tgtcctatat ggatatgtcc
    30301 gttagcataa ggggggccat cgtgtaaggt aaaacttttt ttcgcatttt tgcgattttc
    30361 tttcattttt tcataagcat aattttgctc aaaccatttt ttaaatcttt gcggttcaag
    30421 ttccgctaaa ttcgcccgca tagcaaaagt agtgctgggc aaaagtagag tttctttgta
    30481 gtccattttt tccacctaat ttttaataat cttaaattct actcaaatta gctttaattt
    30541 ctactttgtt tttggctata attataagaa aaaaaggaaa atttatgaaa catttgcttt
    30601 atcttatagg agatgagctt actataaacg aaaaattcaa aaattatatt tatagaactt
    30661 atgaagaaaa atttaaagaa atcaacgaaa ttcgcataca aaataaaacc gataaagatt
    30721 tacctttttt acttgaaaat ctcttaaatc agtatgattt tatcacttta tttacaagct
    30781 ctttgcatta tgcgactgtt gctaaaattt tagcaacttt aaatgatgat aatcttatct
    30841 taaaagatga taccttggtt ccagataaag cagaatttag taaaaatagc tttgtgtgta
    30901 atttttcaaa ttcaaaaatt aatgtcgtta aaataaatcc aagcgaaaaa ttacccaatc
    30961 ttcttgggca tataaaatta aattttgcat atttttgcat ttttggcatg gatgatgaaa
    31021 gcgctatatt gctactgcaa accctaacaa aatcttatga gataagtata aaatcaacca
    31081 agcttttaga taatcttgtg cttattaagg ccacttgcgc taattttgga aaacttgatg
    31141 gttttttaaa tagcgtaaaa aatctttttg gacaaaaggt atttttaggt aaagatccca
    31201 tacattttat aagctctaaa cttttagaaa aaaaattaaa aatttctttt gctgaaagtt
    31261 gcacaggtgg actttgtgca agtaccttaa ccaaaatttc aggtgtaagt gaaatttttg
    31321 aaggttctat tgtaagttat tccaaccgca tcaaacacgg atggcttgga attagcgaaa
    31381 gcgtcttaga aaataatggc gaatacagtg aacgttgtgt ttattttatg ctaaaaggta
    31441 tttttaaaac agctaatcct gattttgcct tagctattag cggagtagtt ggcgaaaaag
    31501 atgagggaaa aataaaatca ggcactattt atataggtgc aatgtttaga gatggaactt
    31561 ttatccaaga aacgctttat ttagatggag atcgtgaatt tatgcaagaa caagctgttt
    31621 tggcaacttt ttgcttactt ttaaaattaa aacctgaaat ttttgaaatt taagggattt
    31681 aaaaatgaaa gaaattaagc taaaagaaga cttggaaaaa atttatccct tgataaaaca
    31741 attaagaaat aacctatctt tgaaagattt tttagataaa ttccaacttg ctacacaaac
    31801 tcaacattat aaactttttg cctatgaaaa tgagggaagc tacaaagcag cttgtggagt
    31861 catgcccttt aatgtacttt atcataatca ttgtctttat atttgtgatt ttgtcataga
    31921 tgaaacttta agaggaaaag gtataggtca agcttttttg aaaaaaatcc aaatttgggc
    31981 aaaaaatcaa ggatatgaag aattagaact aagttcaagt ttttttagaa cacaagctca
    32041 tgaattttat atccaaaaaa tgggttttga aaaatctggt tttgttttta agaaaaatat
    32101 caaactataa tattttttga ttaagctttg cattttataa ttaatattat tatttttgat
    32161 tttaaggaat aaaatgaatt ttaaagaact aatttcaaaa cgcagagctt gtaaactttt
    32221 taatgataaa aaaatcaatg aaaaggattt gcattttatc ttagaaagcg gagtcttagc
    32281 cccaagctcg catggatttg agccttggaa atttgtagta ttagaacaaa aagaacacaa
    32341 tcttaaactc tcaactctat gttacaatca acaaaatgta gcaagtgcga gtcataatat
    32401 tatttttcta gcaagaaaag atcttcaaag caaagatgaa tttgcacaaa aacaagtgcg
    32461 tcgtttctca ggttctagcg aagaaaattt tcaaaaaatt ttagaaattt atactcataa
    32521 aaccaatgca atgaatgata atgaactcta tcattatgca caacttcaat gctatcttgc
    32581 tatgatgcaa atgtcactag ctgcaatgag cttaggtatt gattcttgta tgataggtgg
    32641 ctttgaaaaa gttaaagttg atgattttct taatttaact tatccttttg aaactgctgt
    32701 aattttatcc ttaggatata aagcccatga accaaaatat tctactcaac gcttaaattt
    32761 taatgaagtc gtcgaatttt acaaggaaaa ataatgaaaa aagaacttga aatttttagt
    32821 acaagatatt cttgtagaaa ttttaaaaat gaaaaactca aaaaagagga tttaaattct
    32881 attttagaaa tagcaagatt aagcccaagc tccttaggac tggaaccttg gaaatttata
    32941 gtagtgcaag atgagaaaag aaaagaagaa ctttctaaaa tttgcaacca gcaaaaacat
    33001 gtaaaagatt gcgctgcgtt aattatcatc atttcaagac ttgatttttt ggattatttt
    33061 gaagaaaaac ttagaaaaag agatatgagt gaaacagaaa ttcaaaaacg cttagatgct
    33121 tatatgcctt ttttaaaatc tctaaatcaa gaagaaaaaa tatcttatgc aagagaacaa
    33181 gctcatatag ctctagctag catactttac agtgctaatg ctttaaatat agcaagctgc
    33241 actataggtg gttttgataa acaaaagctt aattcttatt tatcacttga tattcaaaaa
    33301 gaaagatcaa gtttggtggt ggctttagga tattgcaacg atgaaaaaaa tcctcaaaaa
    33361 aatcgtttta gttttgatga agttgtaaaa tttatttaaa ttttgctttt aagcaaaatt
    33421 taaataaaaa taaactgatt cttttttgta tttttactaa gtctttgctt aaattttata
    33481 caattttgat tataatttta catttaattt cacaaggctt gttatgaatt tacccaatat
    33541 cttggcgatt tttagaatgg ttttagcgcc tttgctattt tttttattaa ttcatcattt
    33601 tgaaaatatt catcaaagtt ggattaacta ttttgctgct ttaacttttt cattagcagc
    33661 tttaagtgat ttttttgatg gatacatcgc aagaacttgg aaacaaacta caaaactggg
    33721 tggaatctta gatccattag ccgataaaat gcttgtttta gcagcttttt tagggctttt
    33781 acttacagga aaagctaatg aatgggtaat ttatattata ttagtaaggg aattttttat
    33841 cacaggtttt agagttgtaa tgattagcga aaatttaaat gtcaatgctt cttttgcagg
    33901 caaacttaaa accgcttttc aaatgactgc gataggattt ttaatcatgg agtggatagg
    33961 cggtgaaatt ctactttaca tagctttgat tttaactctt tattctggat ttgaatacat
    34021 ctatacttat ataaaagctc aaaaaaaagg agaaaaatga gatctttatt atttttaatt
    34081 gttattttga ttttgggaat taaattttat tctattgaat ttttagcaac tgttttagtc
    34141 atctcatttt taattttctt tcacgaatta ggacattttt tggctgcaag atctttgggt
    34201 gtaaaagttg aagtttttag tataggattt ggaaaaagtc ttatagagcg tgaatttaaa
    34261 ggcacaaact atcgcttaag cactttacca cttggaggat atgttaaact taaaggacaa
    34321 gatgatatgc gtcctggttt tgaaaatcta gacaaagata gctatagcat tttaagtcct
    34381 ttaaaaaaga tttatattct ttttgctgga ccatttttta atctaatttt agcttttttt
    34441 ctttatatta tcataggaaa tttaggtcta aacaaacttg ctccgcaaat aggaaacata
    34501 gcgccaaact ctgctgcaca agaaatagga cttcaaaaaa atgatactat cttagaaatt
    34561 aacggtataa gaattcaaac ctttgatgaa atttcaaagc atttaagttt agatcctttg
    34621 aaaatattaa tcaatagaga aggaaaaaat ttagaattta ttttaactcc aaaaatagga
    34681 caaggataca atgactttgg acaaatcgtt gaaaaacctc aacttggagt cagtccaaat
    34741 gggacaagca ctcttgtaaa acaccaaggt ttagaaagtt ttaaatatgc cgcacaagaa
    34801 agttttcaag cttctacact catcatcaag ggtattgtaa aactcataag tggtgaagtt
    34861 gaagcaaaaa atttaggcgg tattatcacc atgactgaaa ttacctcaaa ggctgcacaa
    34921 aatagcttta ctttgctttt atttatcact gctttaattt ctataaattt aggcatttta
    34981 aatcttttac ctattcctat gcttgatgga ggacatatac tttttaatct ttatgaaatg
    35041 atttttagac gcaaagttcc acagcgtact tttgaatatt taagctatac aggcatggca
    35101 atacttttaa gtttaatgct ctttgcaact tataatgata tatcaaggat tataggtgaa
    35161 taaaaaattt tcctacccta ttccaaattt tactgataga agaaaaagta taatcttttg
    35221 gcgctatttg cgttttcaag caagaaaaat tttatatttt cctcaagtaa gacttctaga
    35281 aaaaacgctt aataaagaaa aaaataaaca tttaaaagac tttttctctc aaagacccta
    35341 tgcttgttac aatgctacaa gaagattttg cgataaaagt tttaaagcaa atgaacgtgt
    35401 taaaacactt atttatgatg ttgataaggg actcgcttgt tttaaattcc ttcccgagga
    35461 acaaataatt ttttcttttg atgaagattt tgagcttttt ttaggatata actataatgt
    35521 ttgcgaagaa ggtttttggg ctttttcttt aaaatttaaa aaatacacaa tcttacaatg
    35581 taatttttgc tttactttag aaaacaatct tctactttct tgtatacaag gacataaata
    35641 caaagatttt aatattttag aaattaataa aattttaact aaaaaatgtc atggtttgcg
    35701 ccctgttgct ttacttatag aatgctctaa gatgctttgt gaaattttaa aacttcaaac
    35761 tactttaggt gtacatgaaa aaaatcaaat ccgttctcaa aaaggaaaag aaaaaggcta
    35821 ttttgtagat tatcaaaaaa tttggctaga aaatggtgga gaattaataa aaatcaataa
    35881 acacaaatac tataaactcc accactctca aaaaaaccta gaagaaatcc cttcgcaaaa
    35941 acgctccatg tataaaaaac gttttgctat gcttgaagaa atcaaaacaa atttagataa
    36001 aaccttaagt attcaagact aattaagtat attttgatat aatctagtct tgctttatgc
    36061 aaaatccttg ctcataaaaa tgggctttaa tatccataag gagaaaagat gaaacattat
    36121 gaggttttat ttatcttaaa accaacactt actgaagagg aagtgaatgc gaagttggaa
    36181 ttcgttaaag aagtcctaac caaaaatagt gcagaaattg aaactgttgt tccaatgggt
    36241 actagaaaat tagcgtataa aatcaaaaaa tacgaaagag gaacttattt tgtgatttat
    36301 ttcaaagctc ctacaaactt gatcgctgag cttgaaaggg tgttaagaat cactgaagaa
    36361 gtaataagat ttttaatcgt aaaatatgaa aataaaaaag aaattgcagc ttgggaaaaa
    36421 ctgagccacg ggattaagca atctaaaaaa gaaatcaaac ctttagatgc tcctgaaatt
    36481 caataaggaa aaagatgttt aacaaagttg ttttggttgg aaatcttaca cgtgatatag
    36541 aaatgcgtta tgcacaaagc ggtagtgcta ttggagcttc cgctatagca gtaacaagaa
    36601 gatttaccgc aaatggagaa aaaagagaag aaacttgctt tattgatata agcttttatg
    36661 gtcgcaccgc agaagttgca aaccaatacc ttacaaaagg ttcaaaagta ctcatagaag
    36721 gacgtttgag atttgaacaa tggagtgatc aaaatggaca aaatcgctct aaacatagca
    36781 ttcaagttga aaatatggaa atgcttggca attccaatgc tccacaacaa ggcggttttg
    36841 gcaataatag cttttcaaac aacaattata gtggaaacta tgaaaatcaa agctatgatc
    36901 cttatatgag tgaaaatcaa aattttaata aagcaaaagc aaaccctgct ccacaaagaa
    36961 accaaaaccc acaacacgaa gaaaaattaa aagaaattga tatcgatgct tatgatagcg
    37021 atgatactaa tttaccattt taaaggataa actatggcag aaaaaagaaa atactctcgc
    37081 aaatattgca aatacactga agcaaaagtt gaatttattg attataaaga tacagcaatg
    37141 ttaaaacatg ctttatctga aagatttaaa atcatgccac gccgtttaac aggcacaagc
    37201 aaaaaatacc aagaaatggt agaagttgca atcaaacgtg caagacatgt agctcttatc
    37261 ccttatatag tggatagaaa agaagtaatc aataatcctt ttgaaggact ataatctttt
    37321 aaagcaaact tgtaaaaagt ttgctttctt atacatttat tctcaaaata aagttaaacc
    37381 aaagtatatt ctaaaacatc actgaaagta tcaacagcaa tgatttccat attgtctcta
    37441 acctcactag gaatatcttt taaatctctt tcgtaatttt ttcttggaat taaagctgtt
    37501 tttatatctg ctttataagc tgcaattaat ttttctttta atccgcctat tggtaaaact
    37561 tttcctttta aatctatttc acccgtcatt gcaacatctg ctttaacctt tttatcacta
    37621 aaaatagaag caatagctgt gcttatcgta atacctgcac ttgggccatc ttttggagta
    37681 gctccatctg gcacatgtat atgaatatta taactatcat aaacattaac tttaggatca
    37741 ataattattt ttttaggtat ttttattttt ccttcatcga ttaaaacttt tatcatgcta
    37801 aaagcaattc tagctgattc tttcattaca tcacccaaac ttcctgtgag cgttaattct
    37861 cctttacctt taatttttac agcctctact tttaaaacat ctccacctac gcttgtccaa
    37921 gccaaaccat tgacctgacc tacttgattt tctccattat ttttttctat ttcaaaaact
    37981 tttttatcta aaaattcatt caaatttttt gtattaataa tgactttttt aatattttct
    38041 aaaagtagtt ttttagcact cttacgacac aactctgcca ctttgcgacg caaatttcta
    38101 actcctgatt cacgagtata atcgctaatg attagctcta tagtttcatc atcaataaat
    38161 aattcattgg attttaagcc atgtttttta agctcatctg gaattaaata ttttttcatt
    38221 atatgaaatt tttcacttgg agtataagag ctaagttcta taaattccat tctatctctt
    38281 aaaggtgcag gaatattgct aatatcattt gccgttgcta taaaaatgac tttacttaaa
    38341 tcaatattaa aatttaaata ataatcccta aatttagaat tttgctctgg atctaaaatt
    38401 tctaaaagca ccgcacttgg atcgcctcta aaactgcgat ttaatttatc aatttcatcc
    38461 aatacaatta caggattaat ttgttttgcc tctatgagtc cttgagtaat acgtccaggc
    38521 atagcgccta tataagttct acgatgacca cgcagctcat taacatcttc aagtccacct
    38581 aaggctatac gaataagctc tctttttaaa gcttttgaaa cagaatttgc cagtgaagtt
    38641 ttaccaacgc caggaggccc ataaagacaa agtataactt tagcaccatc tttttctgct
    38701 atttttcttt tttctaaaag ttccctaact gcaaaatatt cttctatgcg ttcttttggt
    38761 ttatttaatg cataatgatc atggttgagc tgttttgaaa cttccttaat atcaagtttt
    38821 ttcttagaaa ttttttcaaa aggaacatct aatgctgttt ctatgtaagt ttgaatcatc
    38881 gatgcttcgg aattatcttg atgaatgcgt tcgaattttt caatttgttt tttgatttct
    38941 ttataagcgt cttcgtgcat aaatttcttc tttaactcca gacgcttttg atactctcta
    39001 acctcatctt ctttttgcgt atcagaacca agctcttttt gaatttgtct taattgttct
    39061 tttaaaaaat attctttatt taccttatca atacgagaat gtactttatt tttaatttct
    39121 ttttgaattt tattagcttc tatttcttga gcaattaaat ctattaattt tactaatttt
    39181 tgctcaagat ctgttaaaac aaaaaactca taagcaactt gttttttaat acgcacagta
    39241 tttaaaatca aatcgcaaat cctagatgca tcaaaacctt cttcaattgt tcttaaaaga
    39301 tctggagaaa aataatgact aatatttgcc aaatttttta ctttctcttt taaaacttca
    39361 agaagtgctt cttttttagt tccttctaaa aagtcttctt ttataagttc tatcttggct
    39421 tctaaaggtt tattagaaat ttgctctata attttaccct tggcatatcc ttgaaaaagt
    39481 attttcactc ttccatcagg caaaggaact tttcgcatga tagtcccaat cactccgcaa
    39541 ttataaattt catcaaaatt tcttccattt tccaactttg aaggtgcaac aaaaagcatg
    39601 ctatcatttt taatcgcaag atctaaagct ttcatattgg atgaatcgtt aataaaaata
    39661 ggagttatca taaaaggata taaaaataat tcatcttcaa ccaatactgg taaatttgct
    39721 ggataatttt gtatctcttc aatctgcatt tattttcctt gtttattaaa atctttcaaa
    39781 tatacttcta taccaaggaa gctcaggttt gataatactt tgctgataaa attcactttc
    39841 ttgaagtctt tgtttataaa tttgtgcact ttcatcatgc cctatgcgct ggtatagatt
    39901 ttctatagta ctattaagat aaaaaaccgc taaattaaat tttgtaagca ttgtttgaac
    39961 caaaggttca tattctgtat aaggataatc tttcaaaaaa gtatctattt ctttttggct
    40021 ttcaagcatt aaagcctgat tacgatttgg cactgcaaat gcatcaaatt ttgccttaat
    40081 tttaagataa cgaatataat cagcattgcg tgaatttcca aattttttat tatattcatc
    40141 taaataaaat tcagctaact tatattcctc ttcatccata tgagcttgtg ctaaaataat
    40201 taaaatagtt tccaataaag gatcggcaac atgctcactt gccataccat tataatgatc
    40261 atcagctttt tccaaatcct tgtcctgcaa atctttaata atttgcttat accactcact
    40321 agcactaaga ttgtataaac cttcatcatt tttcgtacta cacgcactaa aaaaaacact
    40381 taaaaaaacc aataaaaaaa tacctttttt catacttcac cttgatttat attctcaaaa
    40441 atatatattt taacgatttt ataattatgt tcttctaaaa ttataataaa attaattaaa
    40501 taatttaaaa ttttggaatg attattgctt attttatgtt aaaatattaa acattataac
    40561 ttgaggagaa aacatgaccc tagctgttaa atgccctatc ttaggttttg aagaaaccaa
    40621 aaatatggaa ttttcaacta tcgatgaagt atttgtaaga cttaaaagtc ttgatggtaa
    40681 agacttttct tttgttttaa ttaatcctta tttgattaga cctgattatg aatttgatat
    40741 accaacttat tatcaagagc ttctttcttt aacacctgaa tctaatatga aaatttttaa
    40801 tatagtagcc atagcaaaaa gcattgaaga atcgacagtg aattttctag ctccagtagt
    40861 cattaatctt gataataata ctatggtaca agtgatacta gatacagtta attatcccga
    40921 cttttttcaa gctgatcaaa ttgctaatta tattaaaaaa taatgctcta tatacttgca
    40981 aatggatcta tggcaacagc cttagcctat gggttaaaag atgattatga aatttgtata
    41041 gtaggaagaa gtatagaaaa acttcaagcc ctcgccaaag aaggctttaa aaccttactt
    41101 tacaaagatt ttaacataga aggtaaagat gttattttag catttaaacc ttatgcttta
    41161 gaaaatattg ctcaaatgct aaaaggacaa gcacgtatct taatctctgt tttagccaat
    41221 gttgattttg aaaaactaca aaccatcaaa gctcaaaatt atgttagaat aatacccaat
    41281 acagcagcta aatacaaggc ttcaaccaca ccatatatac ttaaaaactc tcattttgaa
    41341 aatgaaattt tagacatttt aaaaactttt ggctcggctt ataaattaga taatgaaata
    41401 caaatgaatg cagctatggc aattagcggc tgcgctcctg cttttttagc acttatagca
    41461 gaaagcattg ctaatgctgg agtttatgaa ggtttgtcaa aagaacttag tctcaatctt
    41521 acgcgctctt tatttaaaag ctctagtgct ttactagaac atgaacatcc agctattatc
    41581 aaagaaaata tttgctcccc tggcggagtt acaataaaag gcataaaaat actcgaacaa
    41641 aaaggaattc gcggaagttt ttttgaagcc ataaatgcta gcagcgctaa atgaaaaagg
    41701 ctttcatact tatagaaagc attagtgcta taacgatcat atctttaatt ttcattggca
    41761 tttttta
//
LOCUS       DARGED010000004        30144 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.004, whole genome shotgun sequence.
ACCESSION   DARGED010000004 DARGED010000000
VERSION     DARGED010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.004"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            25..327
                     /locus_tag="SFZ84_000157"
     CDS             25..327
                     /locus_tag="SFZ84_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8202329.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(350..556)
                     /gene="ccoS"
                     /locus_tag="SFZ84_000158"
     CDS             complement(350..556)
                     /gene="ccoS"
                     /locus_tag="SFZ84_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG8202330.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(553..2910)
                     /locus_tag="SFZ84_000159"
     CDS             complement(553..2910)
                     /locus_tag="SFZ84_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG8202331.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFIAKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMNSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            3019..4317
                     /gene="rho"
                     /locus_tag="SFZ84_000160"
     CDS             3019..4317
                     /gene="rho"
                     /locus_tag="SFZ84_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG8202332.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            4321..5850
                     /locus_tag="SFZ84_000161"
     CDS             4321..5850
                     /locus_tag="SFZ84_000161"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG8202333.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQAIKQENTTNITPRITPSPIIPHLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTNFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDLQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(5847..6176)
                     /locus_tag="SFZ84_000162"
     CDS             complement(5847..6176)
                     /locus_tag="SFZ84_000162"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8202334.1"
                     /translation="MAITSPVIYHIGYIAIILFETFITLTALKGAYDMFKARNLDAQS
                     FHNAKIFGIISLTCCCILWFFAFQVVAAEWFGMWMSKVWNGLPDATRLVTYMFLALIF
                     ISLKNDD"
     gene            complement(6191..6340)
                     /locus_tag="SFZ84_000163"
     CDS             complement(6191..6340)
                     /locus_tag="SFZ84_000163"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8202335.1"
                     /translation="MIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQFVSHVMSMDTK
                     PDLFR"
     gene            complement(6442..8541)
                     /gene="copA"
                     /locus_tag="SFZ84_000164"
     CDS             complement(6442..8541)
                     /gene="copA"
                     /locus_tag="SFZ84_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG8202336.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAALAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(8541..8735)
                     /locus_tag="SFZ84_000165"
     CDS             complement(8541..8735)
                     /locus_tag="SFZ84_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG8202337.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(8725..9675)
                     /gene="czcD"
                     /locus_tag="SFZ84_000166"
     CDS             complement(8725..9675)
                     /gene="czcD"
                     /locus_tag="SFZ84_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG8202338.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(9751..10014)
                     /locus_tag="SFZ84_000167"
     CDS             complement(9751..10014)
                     /locus_tag="SFZ84_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG8202339.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(10085..10579)
                     /locus_tag="SFZ84_000168"
     CDS             complement(10085..10579)
                     /locus_tag="SFZ84_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG8202340.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(10576..11352)
                     /locus_tag="SFZ84_000169"
     CDS             complement(10576..11352)
                     /locus_tag="SFZ84_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEG8202341.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            11419..12345
                     /locus_tag="SFZ84_000170"
     CDS             11419..12345
                     /locus_tag="SFZ84_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG8202342.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCVNLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(12342..12944)
                     /locus_tag="SFZ84_000171"
     CDS             complement(12342..12944)
                     /locus_tag="SFZ84_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8202343.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(13025..13252)
                     /locus_tag="SFZ84_000172"
     CDS             complement(13025..13252)
                     /locus_tag="SFZ84_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202344.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(13263..14714)
                     /locus_tag="SFZ84_000173"
     CDS             complement(13263..14714)
                     /locus_tag="SFZ84_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG8202345.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGGTGSGATTILDDDGVVNLGDLTIANLHFEN
                     YKAFGTNFNYFLSLGYSHGNNNQLSLPLSTILQMQGYNGKFNEEDGYAVHVGGRYDFT
                     KALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTN
                     IQNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(14878..15360)
                     /locus_tag="SFZ84_000174"
     CDS             complement(14878..15360)
                     /locus_tag="SFZ84_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8202346.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(15370..16077)
                     /locus_tag="SFZ84_000175"
     CDS             complement(15370..16077)
                     /locus_tag="SFZ84_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG8202347.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            16186..16527
                     /locus_tag="SFZ84_000176"
     CDS             16186..16527
                     /locus_tag="SFZ84_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8202348.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQVLGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            16527..16835
                     /locus_tag="SFZ84_000177"
     CDS             16527..16835
                     /locus_tag="SFZ84_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8202349.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(16853..18445)
                     /locus_tag="SFZ84_000178"
     CDS             complement(16853..18445)
                     /locus_tag="SFZ84_000178"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG8202350.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERLYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVNEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(18457..18696)
                     /locus_tag="SFZ84_000179"
     CDS             complement(18457..18696)
                     /locus_tag="SFZ84_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG8202351.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(18698..19321)
                     /gene="gmk"
                     /locus_tag="SFZ84_000180"
     CDS             complement(18698..19321)
                     /gene="gmk"
                     /locus_tag="SFZ84_000180"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG8202352.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(19318..20910)
                     /locus_tag="SFZ84_000181"
     CDS             complement(19318..20910)
                     /locus_tag="SFZ84_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8202353.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNSN
                     KTLETQNLEHDNLEQETIKEQTQEDTPIDLDLTLEDGESEKEDLSQEHTALDTEPSLD
                     ELDDKNEEIEKQELLDDSKTNTLEMQEELSESQDDNSNKTLETQNLEQETIKEQTQED
                     TQIDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKNDEDLEDNKELQANISDFDD
                     LPEVEEQEKEMDFDDLPEDAEFLGQAKYNEESEENLEEFAPVVEEDVQDEIDDFASNL
                     STQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDKELGTNEEEVVVPNLNIS
                     DFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEIVNELSQSIAGAITSSIKDD
                     TLKAALKGMNMNININISFKED"
     gene            complement(20967..21734)
                     /gene="fliR"
                     /locus_tag="SFZ84_000182"
     CDS             complement(20967..21734)
                     /gene="fliR"
                     /locus_tag="SFZ84_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG8202354.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLEYLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TIGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFAMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(21721..22356)
                     /locus_tag="SFZ84_000183"
     CDS             complement(21721..22356)
                     /locus_tag="SFZ84_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202355.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(22369..23442)
                     /locus_tag="SFZ84_000184"
     CDS             complement(22369..23442)
                     /locus_tag="SFZ84_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG8202356.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(23442..24233)
                     /gene="rpsB"
                     /locus_tag="SFZ84_000185"
     CDS             complement(23442..24233)
                     /gene="rpsB"
                     /locus_tag="SFZ84_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG8202357.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(24349..25512)
                     /locus_tag="SFZ84_000186"
     CDS             complement(24349..25512)
                     /locus_tag="SFZ84_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8202358.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(25640..26764)
                     /locus_tag="SFZ84_000187"
     CDS             complement(25640..26764)
                     /locus_tag="SFZ84_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8202359.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(26761..28011)
                     /locus_tag="SFZ84_000188"
     CDS             complement(26761..28011)
                     /locus_tag="SFZ84_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG8202360.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMTGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(28013..28516)
                     /gene="petA"
                     /locus_tag="SFZ84_000189"
     CDS             complement(28013..28516)
                     /gene="petA"
                     /locus_tag="SFZ84_000189"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG8202361.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(28607..29893)
                     /locus_tag="SFZ84_000190"
     CDS             complement(28607..29893)
                     /locus_tag="SFZ84_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG8202362.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQEKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFTLLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(29894..>30144)
                     /locus_tag="SFZ84_000191"
     CDS             complement(29894..>30144)
                     /locus_tag="SFZ84_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG8202363.1"
                     /translation="EAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVE
                     KLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
BASE COUNT        10603 a         5548 c         3869 g        10124 t
ORIGIN      
        1 taatttttac tgaggagaaa tcaaatgaaa aaattattag tagtttctgc tttggcatgt
       61 cttggtgttt ctgcttttgc tgcagatggt gctacacttt ttaaaaaatg cgcagtatgc
      121 catggtgcaa atgctgacaa agtttactta aacaaagttc cagccttaaa aactctttct
      181 tctgctgaaa gacttcaata catgaaagaa tattcagaag gtaaaagaaa tgcttatggt
      241 caaggtgcga tcatgaaact taaccttaaa ggtttaactg aagaagattt taaagctatc
      301 gaagctcata ttgagacttt aaaataattt ctaaaaaagg ctttcctttt taagaaagcc
      361 tttttttatc caaagcttct tttttacgtc tttctaattc tatagcatca cgcaaagaat
      421 cctcatcatc atttaaagta gtaaatttat aatcatcatc aaattgctta tttttaatcc
      481 cccaaagcaa agttgccaaa atgataaaaa acgctaagat agaaactcct atcatcatca
      541 tgattatact attcattctt taatccttaa agcatttaaa acgactatta tactactaaa
      601 agacatagaa atagcagcaa ataaaggatt tatcataccc aaaaaagcca aaggtatggt
      661 gcaagcatta taaaacaaag aaaaagcaag attttgcttg ataattttaa aggtgttttt
      721 agataatttg atggcttttt ttaaagaaag caagtcattt ttcaaaagca aaacatcact
      781 actttctata gctagatcac ttccttctct taaagtcatt gaaacacttg cgtattttaa
      841 agctagtgca tcatttaccc catcacctac aaataaaact ttgtaatttt tacttaaatt
      901 ttctatagtt ttcatcttat cttcaggcaa acaagaagct tgataatttt gaatttctaa
      961 ctttttagcg attttttcca ctgctttttg atgatcgcca ctgagtatca ttaattcttt
     1021 cttttctttt ttaagataag cgataagctc ttttgcacct tctcttaaaa cactatcaaa
     1081 ctcaaaaaaa gctaaaattt taccttcctt ggcaaaaata aaatgcgtat tatcaaattc
     1141 tttagccaca ataccctttt cttgcaaaaa tttagaactt ccgcctaaaa gcaactcttc
     1201 atttaactca gcacttaaac ctttagcttg aatactcgaa tgctttttaa aatccaaatt
     1261 taaatcctta gctccttttt gctttaaata cgacgcaata ttttgagata taggatgttt
     1321 agaaagtttt acaaaattat aaagctcatt taaatcaagc gctttatcta gaaaaacctc
     1381 tttaagttca agctctattt tggttaaaat acccgtttta tcaaacacca cacaatcaca
     1441 tttgcttaaa tcctctatca cgctagaact tttaaacaaa atatgttttt tcaaagctct
     1501 acctaaagct acaagattac tcacgggcgt tgctaaagcc aaagcacaag gacaagcgat
     1561 aatcaaaact gcaatcgcat taactaaaga aatttcaaaa ctctcttcct tataaaaaaa
     1621 ccaaaaagca aaacaaataa aagcaatcaa taaaaccgtt ctagaaaaat aagccaaaag
     1681 actattaacc aaactttcaa gttttgcttt tttagagctt gcaagttcta aaagctggat
     1741 aatttgactg agttttgaat ctttgtaaag ctttgttgct tcatactcca cacttccatc
     1801 aagcactata caagctgaaa aaatttcatc ttctttttgt atgagttttg gggtattttc
     1861 tccatttaaa gaagaagtat ccacgctcat ttcaccactt ttacaaatcc catcgattaa
     1921 aattttatct ccagttttaa gcaaaattct atcccccaaa caaacctttt gcacttcttt
     1981 agagacaaat tctttaccat tgaaaactaa aacttcattt tgcaaaaaat cattaagccc
     2041 atctatagta tctaaagcac gctttttgct aaacatctca agatatttac ctataaaaac
     2101 aaagcaaatt atcatcgcca cagagtcaaa atacacctcc cctaccctaa aaaacatggc
     2161 ccataaagaa taaacataag ccaaactcgc tccactaatc accaatacat ccatatttaa
     2221 actattcatt tttaaagttt taaaagcact tttataaaaa tgagatcccg tataaaaaag
     2281 cacaggagaa caaaggataa attcagcaaa atttaaaata tccttagtgt ccttatccat
     2341 accgctaaaa aatcctgcgt attttgccac tgctatccac atgatattca tcacacaagc
     2401 tatagccaca acaagcttag aataaaattc cctttttagt aaatccgctt tttttgaagc
     2461 cttgctcgca tcataagcac tcgctttata gcctatgctt tcaataagtc ttaaaatttg
     2521 caccaaagaa atgctttgct catcaaaaac aatgcgtgct ttatggttta aatgattaat
     2581 atcaagttct aaaattcctt cttgtttggt taaaattttc tcattaagcc acacacaagc
     2641 tgcacattct ataccgtgta tcatgagata aatttcacta aatccttctt tggttttagc
     2701 gataaactca tcataatttt tcatttcatt ttgaaaattt acagggctta aagtttgatt
     2761 tccaagcttt tcataaaact catctaatcc actttcatgc aaaatttccc aaacgctctc
     2821 acaaccttta caacaaaaaa atttaccctt atactctatc atttgggctt gtttataatc
     2881 aagtttgcaa tgttcacatt tcataatcat tctttaaaaa aatatttttt ataattataa
     2941 acaaatttga caaaaagtgc atttttttat taaaatcaca ttttacaaaa attattctgc
     3001 taaatcttac gaggacttat ggaaaaagaa aaaaaacaac atcaaagaac ccacgttcca
     3061 gtggaaggtt ataaaatcga agaattaaaa ttattagatt tagaaaatct agttaaaatc
     3121 gctaatgaat gtgaaatcga aaacccaaga gaatttcgcc gccaagaact tatttttgaa
     3181 attttaaaag cacaaacaaa aaaaggcggt tttatacttt ttacagggat tttagaaatt
     3241 tcttccgaag gttatggctt tttaagaggt atggactcta atcttagcga tagtgttaat
     3301 gacgcttatg tttcaaattc acaaattaaa aaatttgctc tgcgtgtagg cgatatcgtt
     3361 acaggacaag ttagagaacc aaaagatcaa gaaaaatact acgctctttt aaaaatcgaa
     3421 gcgatcaatt atctgccttt gcaagaagcc aaagaaagac ctttgtttga taacttaacc
     3481 cctatttttc caacagaaaa aatcaaactc gaatacgatg caatgaagct tacaggtcgt
     3541 gttttggatc tttttactcc tataggaaaa ggacaacgcg ggcttatcgt tgctccacca
     3601 cgcacaggta aaacagagct tatgaaagaa cttgctactg ctattgcaaa aaaccaccca
     3661 gaaatgcatt taatcgtact tttagtcgat gaaaggcctg aagaagttac cgatatgcaa
     3721 agatgtgtaa aaggcgaagt ttttagttct acttttgatt tacctgctta taatcatgtg
     3781 cgtgtagccg aactcgtgat agaaaaagcc aaaagaatgg tagaaacagg caaagatgtt
     3841 atcatcttac ttgatagtat cacaagactg gcacgtgctt ataacaccgc aactccaagc
     3901 agtggaaaag tcctaagcgg cggagtggat gctaatgccc tacacaagcc aaaacgcttc
     3961 tttggtgcag ctagaaatat agaaaatgga ggctctttaa ccatagttgc tacagcttta
     4021 attgatacag gttcaagaat ggatgatgtg atttttgaag aatttaaagg cacaggaaat
     4081 agcgaaatag ttcttgatag aaatatcgcc gatagaagaa tttatcctgc gattaatatc
     4141 atcaaatcag gaacaagaaa agaagaattg ctccaaggcg tagcaaatct tcaaaaaatt
     4201 tgggcaatcc gttcagcgat ttctcaaatg gatgatgttg aagcgttgaa atttttatat
     4261 tctaaaatgc ttaaaaccaa agacaatgta gaacttttat ctataatgaa cgagtagaaa
     4321 atgcttcaag ctttagcgat taaatacaga ccaaaaacct ttgatgaact cataggacaa
     4381 aagacagtta gcgtaagttt aaaatacgcc ctaaatcata atcgcttagc tcatgcttat
     4441 cttttttcag gacttagagg aagtggaaaa acttcaagtg ctagaatttt ttctcgtgct
     4501 ttagtttgcg aacaaggacc aagtgatact ccatgtggca cttgcaaaca ctgtcttgca
     4561 gcacttgaag gcaaacacat agacattata gaaatggatg ctgcaagcaa ccgtgggctt
     4621 gaagatatac aagccttaat tgaacaaacc aaatacaccc cttctatggc aagatttaaa
     4681 attttcatca ttgatgaagt acatatgctt accccacagg ctgcaaatgc acttttaaaa
     4741 accttagaag aacccccaag ttatgttaaa tttatacttg caaccactga tcctttaaaa
     4801 ctcccagcta ccgtgctttc aagaacgcaa cattttcgct ttaaacaaat tccgcagagt
     4861 gaaattttaa atcatcttaa agaaatttta cttaaagaaa atgttaaatt tgaagaagaa
     4921 gctttaaaat ttatagcaag aagcggcaat ggatctttaa gagatacttt aaccttgctt
     4981 gaccaagcta ttattttttg tcaaaatgaa atcagtatta gtaaaattac agatatgtta
     5041 ggctttttag atcctcaaaa aatcaaagcc ttttatcagg ctatcttaac aaaagacaag
     5101 gaaaaagttt ttgcgtattt agaggaatta caagattatg aagcctcaag cgtgattgat
     5161 gaaatgcttt tttatttaaa agaaagtttt tttgcaaaaa gtacagaatt ttctacttta
     5221 atttatgaaa gatttttccg tattttatca aaagctaaga atatgctttg cgatgatgat
     5281 ggctttacgc tttgtgttat ggcttttatg atgatggaag caagtcattt aaaagaaatt
     5341 gacgcacaaa tccaagcaat caaacaagaa aatacaacaa atattacacc taggatcaca
     5401 ccttctccta tcatacctca tcttgagaaa aaaatagaaa aaaatgctta tgaaatcttg
     5461 cttgatagta tttatgatag ggattttgat cttgcagaat gctttaaaca aagtacaaat
     5521 tttattagtt ttgaaaacaa tactttaaat ataagctcaa atgcacaagg acaaaatcgc
     5581 gatacgctca ataaaggttt taaactcata caagaacttt ttaaagctaa atttggagaa
     5641 aatgctaaaa ttaatgtgca aaaagcacta acaattgatg aaaataagct tcaatcctta
     5701 actcaagaat taccaaacaa tgaaaataaa aacatagata ttcaaagttc tattaatatg
     5761 cttaaagaag gggccaaaaa atttgaccta caagaagatc ttaaagaggc tcttaaagat
     5821 tgttttggag agcctagtat agaaaattaa tcatcatttt taagagagat gaaaatcaaa
     5881 gctaaaaaca tataagttac caatcttgta gcatcaggta aaccgttcca aaccttgctc
     5941 atccacattc caaaccattc tgcagcaact acttggaagg caaaaaacca taaaatacaa
     6001 caacaagtta aagaaataat cccaaaaatc ttagcattat gaaagctttg agcatctaaa
     6061 tttctagctt taaacatatc ataagcacct tttagagctg ttaaggtaat aaaagtttca
     6121 aaaagaataa ttgctatata gcctatatga taaatcacgg gagaagtaat agccattata
     6181 aactacagca ttacctaaat aaatcaggct ttgtatccat actcatcaca tgcgaaacaa
     6241 attggaaatt agaattgtaa tctgtcacat ttccaaaaac cactatacct gctaacgata
     6301 caacggtaag caaaataata atttttgaaa atctaatcat tttgcttatg caaaaacatt
     6361 tttgttgcat ttatactctt ttaataatat attttagtaa tattaattat atataatata
     6421 ttattaataa aaattaaatt tttaaattct tttaagtctt aaagaattaa gcactacagt
     6481 aatagaacta aaacacattg caagtgctgc tatatgagga cttaaagaga taaaaggtat
     6541 aaatcctgcc gcgataggaa tgcaaagcac attataaata aaagcccaaa aaagatttag
     6601 cttaataata ccgcgtgttt ttttagcaag tttaaaacat ttaaaaatcg ctgataaatc
     6661 atcttttatc aagataaaat ctcctgtttt tttagcaagt tcatttgcct ttgaaaaact
     6721 catactcaca cttgcagcag ataaagccgc cgcatcattg atcccatctc ctacaaaaag
     6781 agttttttta aatttttgaa tgatttgtag tttttcttca ctcttaagct gagcgtgaaa
     6841 ttcgtctatt tgtaattctt tggctatttt ttctacattt tttacatgat cgccgcttaa
     6901 aataaaagtt ttaagatttt gcttttttaa atttaacaca agctctttgg ctccatcttt
     6961 taaagcattg cttaacaaaa caccgcctaa acacttttta ttcttagcaa aatacaccct
     7021 aacatattct ttaaaagtat caaaaaagat atcactttct tttgtgtcaa tttcattttc
     7081 gtgcaaaaac tgtgcattgc ctacgagata attatcatta tcttctttgt attttatacc
     7141 agaacccaca atcactcttc cctcaccctt taaatcaaaa aaatgatctt tatgtaaagc
     7201 cttagctata ggatgagagc ttaaactttc aatttgacat aatttatcaa aatcatcttt
     7261 agaaagattg tgtttaaaaa tactcaaatt ttcctttgtt aatgtacccg ttttatcaaa
     7321 aaaagcatac ttaactaagg ctaatttttc taaagcagca ggatttttaa taagaatgaa
     7381 attttttgcc gcatttgcac ttgccacaac caaagctata ggcgttgcaa gacctaaagc
     7441 acaaggacaa gagatcaaaa gcacagcaca agagtgtaaa aaagctgtat ttaaatctgc
     7501 ttttagcacc caaaaaacaa aaactaaaaa agcaaaaaat attatacccc ctacaaagta
     7561 tttagaaatt tgatctgcta aatttgccaa aggacttttg atacttcctg cttcaaaaac
     7621 tagatttttg atttgttcta aagtactatc catggccttt ttgtttgctt tgatccttaa
     7681 agcaccattt aaaactactg ctcctgcttg aacttcatcg ccttcttttt ttaaaacagg
     7741 caaaaactcc ccatttaaaa aactcatatc aagctctgca ctccctaaaa gcactactcc
     7801 atctgcaaca atgctttctc cttcttttac caaaagtaca tcgccacttt taacaaaaga
     7861 acttgaaatt tctttgatac tttcatcttc aagcaaaatt tttgtctttt ttgtgtctat
     7921 attttctaaa attctttgat aatcttgtgc cttaaattta gccttacttt caagatattt
     7981 tcctaaaagc acaaaggaaa taatcatcat tgcaccacta aaatacaaat cttcttcttt
     8041 aaaaatttgc aaatacacca aaaaagaata cacaaaagca ctcaaagtcc ccaaagctac
     8101 aagggtattc atatctaaat ttttgctttt aaagcctaaa aaagcatgag aaaaaaagtc
     8161 tctcccacaa taaaatatcc caaaaaaact caaagccatt tggatatttt gagaaaaaga
     8221 acttttaaca aacatttcaa aatacataat aatcacactc aaaactatac ttaagagcaa
     8281 attttttctt aattctaagt gtttttttgc cttgtatgcg ttcaagcttt gttcatcttc
     8341 taaaatttca aagcctaaat ttttaatttt tgcgatgata tccttgcgtt ttttttgatc
     8401 ttcaagtaaa aaaaccccgc tagaattcac ataagaaaca ctagcatctt taacaccatc
     8461 aattttttta caagctcttt ctatagcatt agaacaatta acgcaagtca ttttgcctat
     8521 ttttatacgc aattcttcca ttataaacgc tctacaatct caaaacctaa atcttgaaat
     8581 tcttttgtaa aatttgatac ttgattttct tctaaattta aacttaaaat tttttgctcc
     8641 aaatccactt ctatatttcc aaattcatct tcaagagaat ttttgatcaa atttacacaa
     8701 ttcatgcaat taacattttt tactttaaat ttcattttca ctccttatag gttgtatggt
     8761 aatgtgcccg atttcaaatt catgcaataa cttatgagat aaatcctgag atagtttttc
     8821 aaattccttt agattgcaaa ctcttacttt taaatgcata gaggctacta gcattttatt
     8881 agtgatttga gtaatatgca aatccactac ctcatccaca ctaggattta aaagcaaaac
     8941 ttgtcttact ttttctatat ccacaggaga actttcaagc aagacattag cactttgttt
     9001 aagcaagata atcgcccatc ttaaaagcaa gattgataat acaatagcta aaatcgtatc
     9061 tatataaaca atatcactaa aatacaccac aatcccacct ataataaccg ctaaagaacc
     9121 caataaatcg ctcatcatat gcaaaaaagc ggacttcata ttgacatttt ctaaatttgc
     9181 acccttaaac atcatcaaag cattaatccc atttaccaaa aagcccaaaa tagctacaat
     9241 tatcatggtt ttagcgtcaa tttcttttgg attgataaat ttttctatag cctcataaat
     9301 gataaataaa gccgataaaa taatggttaa agcattgata aaagccacta aaacttcaag
     9361 acgaaaatac ccaaaggtct tttgatgatc ttgccatttt tctacagcta taatggctaa
     9421 aaaactaaga gctaaggcaa aaacatcaga aaacatatgc aaagtatcgc ttaaaagtgc
     9481 caaagaattt gaaaggattg aataaataaa ttgcacaagc atcatagaaa aagtcattaa
     9541 aagagaaatt tttaaaatct ttttatccac actccttgca tcggcatggg aatgatgatg
     9601 ttcatgagaa tgttcttcgt gattatgatg acaagatttg ttagctaaag gctcgtgtga
     9661 taaaaattta tacatcttat atcctttttt gcttgacatt ttaagatatt aagctaaaaa
     9721 ggatataaat atttgttatt tttataaaaa ttaaaagtca aaaagctcgc ctagccaact
     9781 ttctttcttt ttctttttat agtaatcatt gtgctgatga taagctgagt cattatatct
     9841 tgactcttgt cttggagctt ggttaaaatt tgctgtatta gggacactgc gttctatgat
     9901 tttgtcaagt tctccacgat caagccaaac gccacgacac tttggacaat aatcaatctc
     9961 aactccactc ctatcactca taaccaaatc tacattacaa actggacata acatacaata
    10021 cctttttttt aaatttttga tttaaaatta taaaaagaaa tattaaacaa atttacaaca
    10081 agttttaatg tttttttgca tgtctagtca tcataaaact ttgttcaaaa aatataagca
    10141 aggtaacact cactcctata gctagagcca aagtcacaga aacagttgta aaaaaataat
    10201 caaaaaattg aaccaaaaat tcagacttag ccttcaaatc atcactgcgt ataaaagaaa
    10261 taagatacaa aatcgcttta taagcataaa ttccaggtat cataggaata agagcaggga
    10321 aagcgataat ttcagcagga gttttgatga tttttgctaa aacaattcct aaacatccta
    10381 tgcaaaatga agcaacaaaa gttgcaattg ctaaagtttg aaaatgaaaa tattccacca
    10441 aggtaaaacg aagcccatgt gcaattgccg ctaaaagagc agataaaata agggttttta
    10501 aaggtggatt acaagcataa gcaaacccaa atcccgccac agcagcaaaa aacatatctc
    10561 ttaaaataaa ttcaatcatc ttaaaatccc aaaatccgaa atactaagcg tcatgtaaat
    10621 tccaagtgct atacaacaaa tcaaaatagc cacgctgata atacggctaa gccccattaa
    10681 aatatgatct tttaatatat caatcacaga atttataaaa aatactcctg gtataagata
    10741 caagatacta gaacccaaag ccacatcaga agtattggta tatcccatat ccagtccaaa
    10801 aaatacaaac cacgatgaga taaaagaaca aaggatgtat tgaattctta aatcaatctt
    10861 tgctttagtt aaaatatatc ttaacaacaa tcccacaaaa gttgcaaaaa atactaaatt
    10921 tccagcacca aaatcaccac caaaaagcct acaaaaagct gaatttgcca tagaaacaaa
    10981 taaaagatta agcaaataag aatgcttttt ttgttgagaa atttgctcaa aaacgacttt
    11041 tgctttttca agatcgtatt tgtgatcata tatagcccag cttaaagcac ttaaatcaaa
    11101 aataagctta aaattaacat gggcatgatg attgggtata acataagttc tttgaatgga
    11161 gttatcatcc atatctacaa catttaaagt aatatgatga aaaaagaaat tgatatttat
    11221 ctcatagcca taaacctcag ctattcttcc tacgcatttt gccaccctag ctgtataagt
    11281 tccagcacct agcaaagttt tagtatatac gattaaaaaa ttagttaatc tttgtatatc
    11341 aggtttttcc atattttaat aatctttgat tgaatttgtt ataattatag caaattttaa
    11401 aataaataag gagaaaaaat ggcaaaaatc ggtatagttg gtttaggtta tgtaggagct
    11461 gctagtgctt atagcatagt tactcaagga atttgttcag aactttactt atatgatata
    11521 aaacaagatt tagctctagc tcatgcaaga gatttggaag atatgtcagc cattcatttt
    11581 tcttatacaa aaatttttca tgtgccaaat ttagaaaatt tagcttcttg cgatattatc
    11641 attttagctt ttagaaaaga aagcttaaaa gaactaccta gtcgcttagt agaacttcaa
    11701 aacaatatcc tcgaacttaa agacattgtc ttaaccttaa aaaatgctaa ttttaaaggc
    11761 aaatacattg tcgcaacaaa tccaaatgac accataactt actacactca agtattaagc
    11821 caattaccta aaaatcatgt ttttggtagt ggaacaaatt tagatagttc aagacttaag
    11881 aaatttttag ccaaagattt aaacataaat tcaaaagata tttttgcttg tatgattggt
    11941 gaacatggag attctcagtt tgcagcactt tctaatgcaa gcgttttagg acaaaattta
    12001 ttagattttt ataagcaaaa attaggcaaa gatttagaca tacaagaact cgaaaaagcc
    12061 gtgattagcg agggatattt catctatgaa cgcaaaggaa gaacagaatt tggcatagga
    12121 acttcttgtg taaatttggc caaagccatc ctagaagata gaaaaagttt acatcctgta
    12181 agtgtggttt ttgatgatat agctttttca atgcccgcta tcataggaaa agatggtata
    12241 gaaaaggttt ttgaattaaa attcaatgaa aaagaaaaaa taaaattaga aaattcaaaa
    12301 caacaaatca aaaacgccat acaaagcgta aaagataaaa tttaagcctt tttaaaaggc
    12361 tttttgattt tgatataaat taaacttgct aaaatcacaa aaacaattat aatgattaaa
    12421 atttgagtta aataagtttt aatcaactct tcattttgtc ctatataata acccaaaaat
    12481 acaagtatag ccacccaaat agcactacca agtgcagtaa aaagtataaa atttacaagt
    12541 ttcattttta ccaaacctgc aggcatagag atgtactgac gaatccctgg taaaagacga
    12601 caagtaaagg ttgaaaattc cccgtgtttg ttgaaaaatt cttcaaattt agcaaatttg
    12661 gcttcgttta taccaaaata cttaccccat tttaatacaa aatttttacc ccaaaaaaag
    12721 caaatataat aattaatcaa agcccctaaa acagaaccta aagtcccact aagtatacaa
    12781 agagtgatat caagttcgcc tttatgtgcc aaatatccag caggtatcat aacaacttca
    12841 cttggaaaag gtataaaaca actctctaag gtcattaaga taataatacc caaatacccc
    12901 caagcactag ccgtctcaac aataaaagaa atgatttctt gcatgttagc cttatttgaa
    12961 gaaaatttta aaaaattgta gcttaaaaaa ttaaacagta aaaagcggtt ttacaccgct
    13021 ttttttattt acctgcaact gaaacttgat ttggattgtc cgctgcacga gcgatcatac
    13081 actcttttaa aacagcagca tcagctggat cgctaacttt tttattaatc cagcgttcaa
    13141 cttgtttcat tgtttttgac tctggctctg gagcttcgta ttttgccatc aaacttgcac
    13201 aatcagccaa agcaatgata ggtaataaac ttgcaaaaag tatttttctc atcttttgct
    13261 ccttagaatt ttacattata cattaacatg atattatcag ctcttgcttt atcttttttc
    13321 gctccaccaa atggtaagcc acgattaccc caaatatttt ggatattagt atagcttaag
    13381 cgtaagaatt gatatctatc aagttgataa atcacataaa aatcatgtgc tgttcctctt
    13441 gtcattctta tattaagtgg atcgttgata cttggacggc tcatagtata ccagtatcta
    13501 cttccccaga aaaactcata ccctactttt aaagctttgg taaaatcata gcgtccgcct
    13561 acatgtacag catagccgtc ttcttcatta aacttgccat tataaccttg catctgaaga
    13621 attgtgctta atggcaaact taattgattg ttgttcccgt gagaataacc taaagataga
    13681 aaataattaa aatttgttcc aaaagcttta taattttcaa aatgaagatt tgctatagtt
    13741 aaatctccta aatttaccac accatcatca tcaagaatag tagtagcacc gctaccagta
    13801 ccaccaggta aagcaattgg accattgtta agtggcaaag caaaatcgct taaatatgca
    13861 atattaaata atattaaatt atctcccata ccttctatag gaagctctcc ttctactgca
    13921 gcatagtaaa gatttgcatc agcatctttt tgatcgctca tccagtctct taccttgcct
    13981 tcttcatccc attgataggt tttaccataa gctgcacgga tagctacctt atgatcttgc
    14041 aaactttcag gcttataagt gatcactgct gcatcaccta gagcattaat cgctaaggct
    14101 ggataagttg attgtcttaa agcattgttt ctaagattac ttcccggacc atcggttcct
    14161 ggctgtcttc ctatggttgc aatccactca ggtgtgatat agtagtcaag ataagctcta
    14221 tctacataaa gtacaggccc acttgatctt gtgtttcttc ctgcatctaa gtcaagtgga
    14281 cttccactcc aacccatttg agaccagttt ttagccatag ataaacgacc atagaatttg
    14341 gttttatcat taatatcagc attcatattt aaatgaagct cattcatcca tttgttatta
    14401 gcactataat cttgtccgct aactttatag tttgtatttg aaactgctgt tgaaaactca
    14461 agtccaaatt taaccttgct caaagcagct tggaattctg tttcatcggc tctatcatta
    14521 agatcagcaa gttcagcttt tacagcttca ttttgcttag cttgagcttc cctttctttt
    14581 ctgatttgtg caagttcagc ttgaatttgt gcaagctgtt tttgaagctt ggttatctca
    14641 tcatctgtat ttttagcaaa aagtgaagat gaaagaagac aagcacttaa aataagtgaa
    14701 aacttagttt tcataatcat aactccttgt aattttgtta catttagcaa attaaaattg
    14761 tgattataga aaaaaaagtt taaaaaaaaa ttatacatta atcattttta gctagtcaaa
    14821 cttatgacta gctttgtaaa tattgtagtt ttaaaaaagt tttaaaattt taaattttta
    14881 aattttatcg caaattttta tgtctaaaat tttatctcct tggcgtatag agtctaaaac
    14941 ttctaaactt tcttcatctt ttggatcaat ttgcccaaaa acagtatgaa ccccatctaa
    15001 atgagcttga gggctgtgac aaataaaaaa ttgagaacca cccgtatcgc gtcctgcgtg
    15061 tgccatagat aaggttccac gctcatgttt atgctcttga tcatcacatt cgcaaatgat
    15121 ttcatatcca ggcccaccta caccattgcc gtgtggacaa cctccttgta tgacaaaatt
    15181 tgggatcaca cgatgaaaat ttaaatcttt ataaaatccc tcattagcca aagtagcaaa
    15241 attacaaacc gtttgcggag cctcatcgcc aaaaagtttt aatttcattg tgcctttttc
    15301 agtttctata agagcaaatt tgtattcatt tactttgctt gtgtcgattg tttttatcat
    15361 tatttctcct taatctatat ttgtataaac agcttgaaca tcatcatcat cttctaactt
    15421 atctaaaagt ttttctatat cgctaagctg ttcttcgcta aagcttacag gattgtttgg
    15481 tatatactca agtcctgctt ttttaagaac taaaccctta gtctctatag cagaacttag
    15541 ctcaccaaag gcagtataat caccgctaat tactaactct tcttcatttt gttctaattc
    15601 ttcaagccct gcatcgatca aatcaagttc taattcttct aaatctcctg caaatttttc
    15661 aagatgaaaa accgcttttc tagtaaacat aaagcctaaa gatccatttt gtaaaacttc
    15721 tccaccattt ttgctaaaaa tggctttaac attagccacg gtgcgcgtag ggttatcgct
    15781 catacattca actataacca aagctccatg tgcagctttt ccttcataat gaatgttttt
    15841 aatatctgcg ctatcttttc cactcgcacg cttaatagcc gcatctatat tatcttttgg
    15901 catattattt gcttttgctg tggctatagc acttcttaat tttggattca tatcaggatc
    15961 agtgccacct tctttagcag ctacttgtat ggctttagca agcttaggaa aaagcttact
    16021 cattttatcc catctagcct ctttagaagc tcttcggtat tcaaacgctc gtcccataaa
    16081 ttctcacttt ctttaaagat ttttaaactt aaaagtataa actaaaaagg ctaattaaag
    16141 ctttaaatgg tatgatttta ccatttattt ttggggagaa gctttttgaa tatcgcaaaa
    16201 aaagaacttt ttgttgcttg gtttttcttg attgctgcta ttgtatttga agttttaggc
    16261 actagttttt taaaaatgga aaatcaagtt ttaggctata tatttatggc tttatttata
    16321 gctttttctt atttttttat gggcaaggcg attaaaaaaa ttcaagtagg tatagcctat
    16381 gctgtatggg aacttttagg gattattctt atacttttag tttcttttat agtttttaaa
    16441 gagagtttaa ccttaactca aattctaggc attgttcttt ctatcgttgg aattatcatg
    16501 attaatatag gcgaggttaa agaataatat atatttttat tattgttcta tcggcattgt
    16561 tagatatcgt agcaaattta ttgctaaaaa aatcagatgg ttttaagaat aaaatttggg
    16621 gcttagctgc gattgtcaat gctatacttg ctttttttct actttctttt tctttaaaat
    16681 atgttccttt aagcatagct tactcaactt ggggtgctat aggcatcata ggaacttgtc
    16741 ttggtggatg gattttatat aaagaaaaat taaacaaaat aggaatttta ggtatcatta
    16801 tcgtgataat agcagtattt ttactaaact attaaaacag caaaatgcgg ttttaatgtt
    16861 ccattttgtt ttttgcttca atacccatta aagaaaatgc ggttttaata ctaagagcaa
    16921 ccaaagaaaa taatttaagc aaatcatttt catttgcaga gcctacaact ttattttcat
    16981 tgtagaattt atgaaaattt gcagctaaat ttttaagata atcaggaatt ttttgcaaag
    17041 ctctagcctc aaaagcatcg tttaaaacag cctttaaatt caaagcttca aaaagcaaat
    17101 ttacgccatc ttgatttaaa ctttgtaaat cagctttcat tacatcatcg atttttttac
    17161 cagctttagc aaatacttga tgaattctag cgtgtgcata gttgatataa tacacaggat
    17221 tagaactatc ttctttttgc aaatcactaa tatcaaattc caaatgcgta tcgcattttt
    17281 tgctcaaaaa gatataacgc aaagcatcac ttcctatctc attaaccaca tcgctcatca
    17341 agataaaatt tcctgctctt ttactcattt tataaggttc tccatcttta agtagggaaa
    17401 ccatttgtgc taaaataatc tcaagattat tagagtcaaa tcccaaaaat tccatcgcag
    17461 ctttcattct agggatataa ccatgatgat ctgctcccca aatattaata cactttccat
    17521 aaccacgact cattttatct ttatgataaa caatatctgc tgccaaataa gtcccgcgtc
    17581 catcttcacg gataattacc ctatcttttt catcgccttt ttgcgaagaa gcaagccaaa
    17641 ttttaccttc ttgctcgtaa attcctttat gctcttttaa agattctaaa gttgcattta
    17701 aagcatcata atacaatctt tcgcttacat agctgtcaat tttaatcttt gcttgttcta
    17761 aattttgttt aatcaaaaca agcattttat cttttgccca atcagccaaa ctagggatat
    17821 tttcttcgct aaaaaattct ttaccaaatt tttcaaaagc ttcttttgct aaatccgcta
    17881 tatactcgcc tttataatat tgctctgggt attcaacatt ttcatgaagt atactttctt
    17941 tcacacttag taaaatagaa agccctagta aataaatttg attacccgca tcattgacat
    18001 agtattctgt attaaattta tagcccaaat gtcttgcaag tcttgttaag gtgtctccaa
    18061 aaacagcgcc tcttgcatgt cctatgtgta aaggcccagt aggatttgca ctcacatatt
    18121 caagcaaaaa actttcttgt tttttttctc ctttagtaaa atcatttgga tttgttaaag
    18181 cctgatttgc aagttcattt aaaaaagttt tggaaattct aaaatttaaa tacccattta
    18241 cagcttcaac tgattcaaaa caatcatgat tttgaaattt gctcgctaag tcgctagcga
    18301 tcaacatagg ggattttttt aattccttag ccagtgaaaa agccaaaggg gtagcaaaat
    18361 gtgctaaatt tttatccttt ggattttcaa gtgcaaaatc acactctaaa atctttttaa
    18421 tttcattaaa aataatactt ttcaaaagac taaaccttaa gctttttttg tttcgtctat
    18481 acttgcatca gcatttgtat tattagttgt gtttttattt tcttctattt tttgagtatt
    18541 ttttgctact tcatcatcat tattcatttc atctttaaaa gttttaatac ctttacctaa
    18601 accctttgca agttctggaa ttttttttgc tccaaaaagc aatacaacaa tcaataaaat
    18661 aatcaaccaa tgacttggac ttgaccaacc acccatttta ttctccttca ttccaaatat
    18721 tttgaatttg ccctagattc tgccctttgg ttctaaattt atgggcgatt aaaatcgctc
    18781 gcaatgcttc ataactttgc tttaactcat cgttaatgat aagataatca tactcgctaa
    18841 gctctttcat ttcatcacta gcgttttgta atcttttttc tagttgtatt attgtatcag
    18901 tatttcgctt aataagtctt ttttttaact catctttatt ttttgtagta ataaaaacag
    18961 aaacaatctt atcagccatt ttttttctgg ctattttaaa tccttgcaca tcaatatcaa
    19021 aaacaactat ttttccatta tctaaagcat tttgagtgtg ctttaaagaa gtaccataaa
    19081 aattttcatg cactctagcc cattctaaaa aatgatcact atctatacct ttttgaaatt
    19141 cttcatggga tataaaatga taatgtattc catttttttc accctctctt ggtttgcgag
    19201 ttgttgaaga aatagaaaaa taaagctcat cttcaaattc atcaaaaagt ttttttaaaa
    19261 gagttgattt tccagcacca ctaggacctg aaatcaacaa aacaaaacct tgcaatttca
    19321 atcctcttta aaactaatgt ttatatttat attcatattc atacccttaa gagcagcttt
    19381 taaggtatca tctttaatac ttgaagtgat cgctcctgct atgctttggc taagctcatt
    19441 aactatctct tcgctattat catctttagt tacatcactt actataggct cttcattttt
    19501 ttctaagatt tcctctccaa gagcttcttg tatatcactt tctttcaatg tatcaaaatc
    19561 acttatattt aaatttggca caaccacttc ctcttcattt gttcctaatt ctttatcgtc
    19621 taaaattggt tcatctttaa aatcttctaa gaccttgcta ctattgtcac tatcaatacc
    19681 ataatcaagc tcatcaagtt gagctagttc ttctttgatt tgatcttgag tactcaaatt
    19741 tgaagcaaaa tcatctattt catcttgaac atcttcttcc acaacaggag caaactcctc
    19801 taaattttcc tctgattctt cattatattt tgcttgacct aaaaattcag catcctcagg
    19861 aagatcatca aaatccattt ctttttcttg ctcttcaacc tcaggaagat catcaaaatc
    19921 gcttatatta gcttgtaatt ctttattatc ttctaaatct tcatcatttt tatcatctag
    19981 ctcatctaaa ctaggctcag tatccaaagc tgtatgttct tggcttaagt cttctttttc
    20041 actttcgcca tcttctaaag ttaaatctaa atcaatttga gtgtcttctt gagtctgttc
    20101 tttaattgtt tcttgttcta aattttgagt ttctaaagtt ttgtttgaat tatcatcttg
    20161 agattcgcta agctcttctt gcatttctaa tgtatttgtt ttagaatcgt ctaataattc
    20221 ttgcttttct atttcttcat ttttatcatc tagctcatct aaactaggct cagtatccaa
    20281 agctgtatgt tcttggctta agtcttcttt ttcactttcg ccatcttcta aagttaaatc
    20341 taaatcaatt ggagtgtctt cttgagtctg ttctttaatt gtttcttgtt ctaaattgtc
    20401 atgttctaaa ttttgagttt ctaaagtttt gtttgaatta tcatcttgag catcatcatc
    20461 aaaactcaaa tcttccattc cctctgaatt tatatctaaa gaattttcat caggcaaatc
    20521 atctaaattt aaattatcta aatccaagct tatatcagca taaggatttt catcattgct
    20581 taacattggc aaatcaatag atgtatgctt gttcgcatct ttattattaa gtaaatttaa
    20641 aaaatctgta ggtaaaaaag gtttttgtaa aatttgcgca tctatatctt ctacattttg
    20701 atttcgcggg gctaaaaaaa tcaatctatc gcatttttct ttaagaattt ttaaaggtgc
    20761 tggagtatca ctatctacaa caatcacatc ataattaccc aaattttcac tataagcatt
    20821 aagttcttca aaatcataag acattttttt agcactaagg cttacaagtc ttgaaactac
    20881 agggttttca tttaaaagta aaattttcat cactttaatc cttaaaaaat aatcgctatt
    20941 ttacgataat ttcatttatc ctttccttag gagaaaaaaa gagtttgcat atgagtaaaa
    21001 agttctaaaa ttaaattttt aaaatattgc atcataacta gtaaaatagc aatcaaaact
    21061 acaaaaccta gagctatctt tataggatag ccaataacta aaagattaaa ttgtggcatt
    21121 gttttcatca aaagtccaaa aataacatcg gctaaaagtg aaattccaag tataggaaag
    21181 ctcatagcaa aacctatgat gaaaatatta aacataccca tatttaaata atgcattaaa
    21241 ttctcatgcg gataaaatcc acctaaacta atataaccca aagaatgact taaaaacaaa
    21301 agcattaaat gatggccatc aaaagcaaga aaaaacatca aagcaagtaa atttaaaatt
    21361 tgagatgtga taggcatact cgttccagaa cttggatcta atatacttgc catagtaaat
    21421 cctatagtaa aagcaatctg ctcacctgcc atcataataa tagcaaaaat aatttgaagc
    21481 attaatcctg ctatcattcc aaaaatcact tcactaataa gctgtaaaac aaaaaaacta
    21541 tctaaatgca aatattctaa tctagccaaa ggatataaat acatagtcaa aaataaaact
    21601 atagtacttt ttatcaccat aggaatagaa ttatgtgaaa aaaaaggaaa aaaaactata
    21661 agaccactca ttctagcaag aagcaacata aaagttacaa catttttatc acctaaataa
    21721 ttaacaaatt ccattggcgt ttatagtata agttttatca caaaaacttg caagcttgct
    21781 atcgtgagtt acaaaaaata aagctgcatc attttcttta acataggaaa ttaaaagctc
    21841 gataacattt ttagcattat caaaatccaa atttccagtt gcttcatcag caaaaataat
    21901 ctttggtttt ttacaaagca cacgtgcgat actcacacgc tgttgttgtc cgccgctaag
    21961 ctttcctatt ttttgatgta aaagcgtatc aatacctaac ctttttaaaa ttttctcatc
    22021 taaatcttga cccgataaaa cactagcaag ttcgatattt tctaaagccg aaaaaccttt
    22081 aaaaagataa tgtgtctgaa aaataatacc aaaatcataa cggcgaattt ttaatctttc
    22141 gttttcatct atctgataaa gactagaacc tttaaaaaaa acttcacctt tttttggaat
    22201 caataaagaa gaaagtatat gcaaaagagt agatttacca caaccgctac tcccttgaat
    22261 agcaatgcaa tctttggtat ttaaagtaag atttaaaccc tcaaaaagcg gataatcaaa
    22321 actatggctt aaattttccg ctcttaagag ttccattttt aaccgttttt aaagttgtgc
    22381 agcaacttca gccgcaaaat cttcagtttt cttttctaaa ccttcgccaa cttcaaagca
    22441 aataaattca acaattttaa tttttccgcc aaattctttt tctttttcag caattacttg
    22501 ttctacagtt tttttatcat ccattacata aaactgaccc attaaagtaa gtttgctatc
    22561 gagttgagaa ttatcagcta taaaactatt cattttgccc gggataatat tatcccaaat
    22621 tttttcaggt ttaccttgag ctttaagttc ttctttgatt ttttcttcag cttcttttaa
    22681 aattgcatcg cttaattgtt tgcgacttgc aaattgagga attttatgtt caggtttatt
    22741 tggatcttta agtctgcgtc tttcttcatt ttctttttca agttcagcaa ccaaagcttt
    22801 gtattcattt tcaacaaaag tcatatccaa atcttcataa cttaaataac ttggtctcat
    22861 tgctgcaata tgcatacaaa tttgtcttaa taaatctctt gattttgaag ctacttcagc
    22921 actatcacaa gctgcagcga tcacaacacc aacacggcca tttgtatgaa tataaccatt
    22981 tacaacgccg ttagcacctg cttttaaagt tgcaaatctt cttacaacta agttttctcc
    23041 tatagttgca atttgacttt ttaaatattc ttcaaatttt acaccattaa tcgtacttga
    23101 gtgaagctct tccacacttt gcaagctatt gctttgaata tgagctgtag tatcttttgt
    23161 taaagcgata aactgatcat tttttgccac aaaatctgtt tcggaattaa tctcacttac
    23221 agttgcgctt gtaaaatcat cacttacttt tacacttact aaaccttctg cagcaagtct
    23281 atctgctttt ttagcagcct tacctaaacc tttttctctt aaaagttgta ctgctttatc
    23341 aaaatctcca ttagtttcac tcaaagcatt tttacaatcc atcatccccg cgcctgtact
    23401 ttcgcggagt tcttttacca ttgcagcagt aatttcagcc attattcttg ctcctcaccg
    23461 aagtcttctt cgctcatcgc ttcatctaaa acttcttttt tctcttcatc ggtgatttct
    23521 ttttcttcat ttgctaaagc ttcgccatct tgttctctta aagcttttcc ttcattaatc
    23581 gcttcagcca tttcttggca gaaaagttgc actgaacgaa ttgcatcatc atttcctgga
    23641 ataggataag ttaccaagtc aggatcgcag tttgtatcta gtggagctac aacaggaatt
    23701 cttaatctat ttgcttcttg aacagcaatt ttttctttta ctgtgtcaat aacaaaaatc
    23761 atatcaggtt gagttttcat ataacgaatt ccacctaaat aagctaataa tttttctttt
    23821 tttcttgtaa gcattaaagc ttctttttta gttaaaagtt taatacttcc atcttcttcc
    23881 attttttcaa ttacttctaa ttttctaatt gattggcgaa tggtaccaaa atttgtcatc
    23941 ataccgccaa gccatctatg atttacataa ggcataccgc atttttcagc gtattcttta
    24001 atcgctccac ctgcttgttt ttttgtcccg acaaaaagta tagtttttcc ttcggcagca
    24061 gcgtcacgaa cgatattata ggtatatcta aaatatctta aagttttttg taaatcaatt
    24121 acataaatac cttttctctc gccaaaaatg aattttttca tctttggatt ccagcgtctt
    24181 gtttggtgtc caaaatgcac accgcattct aataaatctc tcatactaac catgagtttc
    24241 tccttataaa tttagcttta ttcctccaca tcccttaatt tacacaagct aaaaaggatt
    24301 gatgcgtgtg aaatgaagct aagattttat caaatttaag tttagttttt acttatatat
    24361 gtagtccttg gtaaggctta gattattatt gatttctttt gtgattaaaa attgaaacaa
    24421 atccacgctt ccaacacgaa aagcagaggc acaagaacga aggtataaat cccacattct
    24481 tataaattct tcatcatatt tttcccttac cttgtccaat actttgttaa aattttcatc
    24541 ccataaatct aaagtttttg catagtgcat tcttaaactt tctgctaaaa gaagatgaaa
    24601 atcccactca ctcatagcac ttacaacctc tcttaaagaa ggtaaatatc ctcctggaaa
    24661 aatatattta tctatccaag catttgtttt tccttcaaac atggctaaaa tagaatgtaa
    24721 aagcatagaa cctccaggtt ttaacacttg ttttactttc atgaaataaa gtcctaaatt
    24781 ctctttgcct acatgttcaa acatacccac agaaacaact ttatcaaaat aattttcaaa
    24841 ttctaaatct tgataatttt gaagtcttat ttctatttta tcttcaagac caagttcttt
    24901 tactctttcc ttagcttttt tacactgctc ctctgaaata gtaattccaa caactttaac
    24961 tccatacttt tgagccgcca taatagaaag ccaaccccag ccacaaccta tatctaaaag
    25021 cttttctcct tcttttaaat caagtttttt aagagtatgt tctattttgt taatttgagc
    25081 ttcataaaga gtattattag gctctttaaa ataagcgcaa gaatagctca tagtatcatc
    25141 aagccaaagc ttataaaaat cattacctat atcataatga cttttgatat ttttactttc
    25201 ctgtttttgg gctattttac tcaagatatc ctctgtattt tttaaaaaac gcttatttga
    25261 aaaataatac aaaactttag ctatttcatc ataatcacct tctatttcta gtttagactc
    25321 catataatgt tttgcaaaaa ctaaactcgt atcactaaat aattttaaaa aaggtatttt
    25381 ttctttgaaa attaaagaaa atttagcagg ctgattaccc acatgaaatt cttcttgatc
    25441 ccaaaataca attctaaaat ttccataatt ccattttgaa agaataaatt taatcatttg
    25501 tttttcaagc atgacatact ccaactaata aaaattatta tttgatagta tctcttaatt
    25561 atgtttaaaa tttgataaaa ttgaagaaaa gatagaattt ttgccacaga tataaaatag
    25621 tggcaaaaat tttataatac taatgtaatt tagaccaaac agaacgcttc caacctatag
    25681 caaaaatact taaaattaca aagaatatca ttacataaat tcctgtagtt tttctttctt
    25741 cttttttgct atcacccact tgatcaatat aagatacaac cttagcctgt gcagcttctg
    25801 ttaaacctac tcttggcata gcggttcctg gaagaagttt ttgagtatta ttaataaaat
    25861 catgtaaata ttgctcacca cgagatctta tcatcataga aagatcaggt ggaacagaac
    25921 ctaaataagt ttttaaatca ttttgatttg atggagtaaa aaagctatcg tatttcatat
    25981 catgacaacg tccgcaagcc tcaataaaag ttgctttatc tttagcaaat tttatatctt
    26041 tttccattaa agctgctttt tgagcactat tttccatttt agcatatttt gcctcaacat
    26101 ctttcttaat agtagcatct tcattggctt caaatttaac actcacatct ttaagataag
    26161 caattacatt ggctatattt gcatttgtag cttcttcact ttctcctgaa gtatctttat
    26221 tgtaagctgt cataataaaa gcatcgccaa atttatgatc tacttttaaa gcaagcgcag
    26281 gatgcataat caaagctgct aaaaattttt catcaaaaat agcaccagct gcactaagat
    26341 caggcggtat tactcccata gaagaatcag taatattagc tgctattcca tcttctttta
    26401 caccatgaca tgcaaaacag ttattttcaa aaaattcttt accttttttt gcatcaccct
    26461 tagcaaaatc gatttttgca acatctgccc aaagtgtttc aaccttgctt aattcttctt
    26521 ttgctttttc aagttctttg tttgcactct ctattctttt agcatctcct gaagcttgtg
    26581 catcttttag agctaattct ttagcttcaa ctataccttt tgcaaaagta gtatcttcaa
    26641 cagcaaaatc aaaatttgca ggagcaacat gaggcttcat cactgaatga gcataaggct
    26701 ctacccccca atatacaagt gcagtaaaaa ctactacaac taaaaatatt tttatttctc
    26761 tcattgttta gctccttttc tctccataat agtaataacc ggtaaaacta caataagtaa
    26821 aagtaaaaat actatagaag cgtaaaatcc tacccaagca tttacacctg ttggaggtaa
    26881 ttttccataa actgttaaaa caattaaatc gataagcaat atccaaaacc aaatgaaaaa
    26941 taaaggtctt tcatgagctg gttttaccac atcacttcta tcaagccaag gaagcaagaa
    27001 gaaaatcact tgagcaatac caaatgcagc caaacctata tcaaaagctt taatacctgc
    27061 aatatcaaag aaaaatcctc ttaaaacttc ataactccat aagaaatacc actcaggata
    27121 aatatgagct ggtgttttaa gcgcattagc tggatcaaaa ttaattggat ccattgcaaa
    27181 ttcaaattta aaacagacca aataaaagaa gaaaatcata aaaaagctta tatacataaa
    27241 atcttttgat aaaaatcctg gccaaaaagg aatcacttta gaaccctttg tgtcacctgt
    27301 catgtatttt tcagcctcta aatcaaagtc aagttcttca gaaatttcat tattaacatg
    27361 aggaattctt aaagaataga agtgaaatgc tataatagca atgataacta taggaagcaa
    27421 gcacacatga agcataaaaa atcttgttaa agttggatca gaaaccgcat aatctccacg
    27481 aatccaaatc acaagctcag ggccaataaa tggtatccct ccaaaaagat tagtgattac
    27541 ttgagctgcc caataactca tttgtcccca aggaagcata tacccactaa aagcttcagc
    27601 agaaaataca acaaacaaaa gcataccgct aacccaaatc atctcacgac cttttttata
    27661 agaaccgtaa taaattcctg ttagcatatg tatgtatata atcaaaaata caacagaagc
    27721 ggcaacacca tgcatgtgac gccaaagcca tccatagtcc acctcttgca taatagtctt
    27781 attcacacta tcaaaagcaa gtgcagtatc tggtttataa tacatcacaa gtaaaagtcc
    27841 tgtaacaaaa agcactgcaa aaagagtggt taaaataacc cccattgccc aaagaaagtt
    27901 aatttgcttt ggtatccaat actttaccat taaaacatca agcagtttat gtaccgcaag
    27961 tctttgatca agccaatcta caagaccatt agcttttcta atttgtgcca tcttaagcct
    28021 ccgctatcat ttttttatat tcaggaccct cttcacctaa aacaagcttg gttccatcaa
    28081 ttttaaaagg aggaatttca agaggctttg gaggaggtcc aaagacattt tttccacttg
    28141 tgtcaaattc tccaccatga caggcgcatt taaacaattg ctcacttggt tggtaagcag
    28201 gtatacaacc caaatgcgta caaagtccta taaccacagt ataagctgcg ttatctacca
    28261 caacatcacg tttttcatct tttggcatac tcgcatcttt ttttaatata aaaataggct
    28321 ttttacgcca ttctatagtt ctaagctctc catcttgcat tcctgataaa tctactgtag
    28381 taaaacctgc agctttaaca cttggaagcg gatcccaagt ttttttcatc gcaacaagtg
    28441 agaaaacacc gcctacagca gctacgcttc caaatgcaaa gcccataaag cttcgtctac
    28501 tctcagatgt agccataact tgctcctttc gattttattt tttaaccaag ttgaaagttt
    28561 atcgaaatta aaataaattt tttctttgtt taacaagttt tgatatttag acaataagag
    28621 caaaaagaga aaaaacaagc acaggtaaag ttatcaaaaa gccaaattta caatattgcc
    28681 aaaaagaaat attaatgcct tttctagcca aaactccaag ccaaagcaaa gttgctaaag
    28741 aacctattgg cgtaagtttt ggacctatat ttacacctaa aagatgtgca taaatcatca
    28801 aagaatcaaa agaaaaattc tcaaaatatt cttttaatgc caaatctccg attaaaacca
    28861 taggcaaatt attaaacaca gaagatccaa aagctgaaat caaagccaca ccaaaaattc
    28921 cactcttatc ttgcatcaaa aaagcatagc ttttaaccaa aatttcactc acacctattt
    28981 tatgtaaagc aaaaaccacc atataaagcc caaaactaaa aagcaaaact ccataaggtg
    29041 cttcaaaaag aattttaata ctttttttac cttgaatttt taaaataata agccaaaaaa
    29101 ttcccgccca aagcaaagta aaaaaactta ttttaatatt aaaaatttca cctataaaaa
    29161 aactgataac aaaaagaaat aaaaatacta tgcaaagaaa aaacaatttc aatgaaattt
    29221 gctctttttt gattaattta aattcaagcc ttttaggtaa aactctcaca taaagcacaa
    29281 aaaccgtaac tatagtagaa agtaaaacaa aaaaatttgg caaaaacata tttttagcaa
    29341 attctaaaaa ttctatctta aaataatttg ctgtaatgat attggttaaa tttgaaataa
    29401 ccaaagcatt tgaacttgca tcacataaaa aagaaagact aagtaaaaaa gaacttaaaa
    29461 taaaagcatg atttttacaa tctttaagag ttgaaaataa agctataata ataggtgtaa
    29521 tgattaaaat cgctccatcg ttagcaaaaa atgcagaaag aaaaaagaca aaaatcaaca
    29581 aaaataacat caattttttt gtgctgatat aaattttttc ttgatttttc tctctagaaa
    29641 aatgcaaaat tttactcgca ataaaatcaa aaaatcccaa agcttccaag ctaaaagaaa
    29701 ggataatcaa cccaactaaa gttaaagaac tatcccaaac caaagaaaaa acaaaataag
    29761 cgtctttaaa atctaccaat tgaaaaataa aaacaaaaaa agcccccaaa ctagaaaata
    29821 cccaaatagg taaattccat ggacgccaaa aaagtaaaac taaagtagat aaaaaaataa
    29881 aaaaagcaag catttaagct tttttctttt gcattttgat ataaatttgt aaaatatcta
    29941 acgctgcagg agtaattcca ctgatttgac ttgcagcaaa aatggttgga ggtttatgat
    30001 gattaagctt ttctacaacc tcattactca aaccacttac acttttaaaa tcaaaatttt
    30061 caggaatttt aagctcacta agatttttca ttttttctac ttgagctttt tgcatgctga
    30121 tataatgata atactttgcc tcgt
//
LOCUS       DARGED010000005        29909 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.005, whole genome shotgun sequence.
ACCESSION   DARGED010000005 DARGED010000000
VERSION     DARGED010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29909
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.005"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1065
                     /locus_tag="SFZ84_000192"
     CDS             <1..1065
                     /locus_tag="SFZ84_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG8202364.1"
                     /translation="FLENAFLLTLANNLDKQAELDNLAKPYLNQNDNLKRLSALYALN
                     SNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYYRSAYNQVQNEEIL
                     FKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEKNIEALKSIYKELY
                     QLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQNLKRFDDAKKMSLA
                     LYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAIDKDSNALYLNYYGY
                     LLIDYDLDVKKGIELVKLALKKEPQNLYYLDSLAWGYYKQGDCKKAWEILKQTLEDKE
                     FANSDESKAHAKAIKACIKP"
     gene            1062..1838
                     /gene="trpC"
                     /locus_tag="SFZ84_000193"
     CDS             1062..1838
                     /gene="trpC"
                     /locus_tag="SFZ84_000193"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG8202365.1"
                     /translation="MILDKIFEKTKEDLKERKAQLPYDMLGRSLASNPFFPKDVKAAL
                     KRIENEVRIIAEVKKASPSKGVIRENFDPLDIALKYEKNGAAAISVLTEPHFFQGSLE
                     YLSMIRRYTHTPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFSGADIIGINHRNLDDFSMDMNLCEKLIPQIPNSKIIIAE
                     SGLEDKDFLRHLQNLGVDAFLIGEYFMRQNDEGEALKALL"
     gene            1849..2334
                     /locus_tag="SFZ84_000194"
     CDS             1849..2334
                     /locus_tag="SFZ84_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG8202366.1"
                     /translation="MQYLYAPWRSEYFEKEKSECPFCDCANKIKSDEELGVIFRAKYC
                     FGVMNRYPYSAGHFMIIPYLHEEHIENLSDEAWQEISQFVRLGVRILKSELHAGGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWVGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNV
                     K"
     gene            2324..3322
                     /gene="mnmH"
                     /locus_tag="SFZ84_000195"
     CDS             2324..3322
                     /gene="mnmH"
                     /locus_tag="SFZ84_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG8202367.1"
                     /translation="MLNEVDFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNMSKHILELAHKFRIGDKIGIYCSRGGLRSKS
                     IAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEINLDFFALCGNTGCGKTELLELLPH
                     HLNLEKMANHLGSSFGDILGKQPTQKAFEANLFYTLNSLKDFIFIESESRKIGEIVLP
                     LKLYEKMQKAFKIHCFCSLEKRIDRIQKIYQEKMTPLKFKECLAKISPYISVNFRQDL
                     LKSYEQREWQRLIALLLAYYDKSYKKPQKIDFELNTDDIFKAKEELLGYFKTQLLF"
     gene            3626..4861
                     /locus_tag="SFZ84_000196"
     CDS             3626..4861
                     /locus_tag="SFZ84_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG8202368.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDVAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
     gene            complement(4921..5832)
                     /locus_tag="SFZ84_000197"
     CDS             complement(4921..5832)
                     /locus_tag="SFZ84_000197"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG8202369.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(5829..6695)
                     /locus_tag="SFZ84_000198"
     CDS             complement(5829..6695)
                     /locus_tag="SFZ84_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8202370.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            complement(6700..7773)
                     /locus_tag="SFZ84_000199"
     CDS             complement(6700..7773)
                     /locus_tag="SFZ84_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG8202371.1"
                     /translation="MNFINLQAQYRAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRVLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFKAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            7888..10416
                     /gene="alaS"
                     /locus_tag="SFZ84_000200"
     CDS             7888..10416
                     /gene="alaS"
                     /locus_tag="SFZ84_000200"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG8202372.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDKLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFVKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGVKKIKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDAPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKIDEALKQSLETIEKAL"
     gene            10416..10967
                     /gene="maf"
                     /locus_tag="SFZ84_000201"
     CDS             10416..10967
                     /gene="maf"
                     /locus_tag="SFZ84_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG8202373.1"
                     /translation="MLILASNSISRANLLKTAKIDFKQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKTKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            10964..12895
                     /locus_tag="SFZ84_000202"
     CDS             10964..12895
                     /locus_tag="SFZ84_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG8202374.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYAAYLFTSVDTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPEKTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(12923..15496)
                     /locus_tag="SFZ84_000203"
     CDS             complement(12923..15496)
                     /locus_tag="SFZ84_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8202375.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(15608..15898)
                     /locus_tag="SFZ84_000204"
     CDS             complement(15608..15898)
                     /locus_tag="SFZ84_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG8202376.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAIEENDIQSIKELNKAIDMFMK"
     gene            16025..17359
                     /locus_tag="SFZ84_000205"
     CDS             16025..17359
                     /locus_tag="SFZ84_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG8202377.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISNLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDKATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGTTKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            17361..18071
                     /locus_tag="SFZ84_000206"
     CDS             17361..18071
                     /locus_tag="SFZ84_000206"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG8202378.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            18080..18325
                     /gene="purS"
                     /locus_tag="SFZ84_000207"
     CDS             18080..18325
                     /gene="purS"
                     /locus_tag="SFZ84_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG8202379.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            18327..18974
                     /gene="purQ"
                     /locus_tag="SFZ84_000208"
     CDS             18327..18974
                     /gene="purQ"
                     /locus_tag="SFZ84_000208"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG8202380.1"
                     /translation="MKVAIIRFLGTNCEFDTAYAFEKLGVKTQIIWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIISLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            18971..20167
                     /locus_tag="SFZ84_000209"
     CDS             18971..20167
                     /locus_tag="SFZ84_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8202381.1"
                     /translation="MKILLTLIFSIVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     TDINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            20148..20840
                     /locus_tag="SFZ84_000210"
     CDS             20148..20840
                     /locus_tag="SFZ84_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG8202382.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDDKWLENTRKKM
                     QELLDQERAKLC"
     gene            20834..21202
                     /gene="crcB"
                     /locus_tag="SFZ84_000211"
     CDS             20834..21202
                     /gene="crcB"
                     /locus_tag="SFZ84_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG8202383.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            21275..23101
                     /gene="htpG"
                     /locus_tag="SFZ84_000212"
     CDS             21275..23101
                     /gene="htpG"
                     /locus_tag="SFZ84_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG8202384.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKVEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            23098..23415
                     /locus_tag="SFZ84_000213"
     CDS             23098..23415
                     /locus_tag="SFZ84_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG8202385.1"
                     /translation="MIENIPASLWTKQDLNTYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            23415..23849
                     /locus_tag="SFZ84_000214"
     CDS             23415..23849
                     /locus_tag="SFZ84_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202386.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            23992..24475
                     /locus_tag="SFZ84_000215"
                     /pseudo
     CDS             23992..24475
                     /locus_tag="SFZ84_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858548.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
     gene            24487..25623
                     /locus_tag="SFZ84_000216"
     CDS             24487..25623
                     /locus_tag="SFZ84_000216"
                     /inference="COORDINATES: protein motif:HMM:NF037997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202387.1"
                     /translation="MLTGVIQSSTVIMAIIVAALLAQQISLENSLAATLGTSVGGVVT
                     AVLASLSTNIEGKKLAFANCIFNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVA
                     LFHTLFNLIGVVLFSFFTPQIVLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIEAL
                     RKESEHLYNNTYAIVAHAIGFSRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKV
                     LFEAIIDFSTKAQVYINDETKNHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNE
                     FLALEYNKIRSNLGELLRSIEELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVE
                     HLISVRKITTAEGISILNDTTFAAKIAEELIGAVEVMFSKDISN"
     gene            complement(25638..27428)
                     /locus_tag="SFZ84_000217"
     CDS             complement(25638..27428)
                     /locus_tag="SFZ84_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8202388.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNN"
     gene            complement(27435..27731)
                     /gene="fliE"
                     /locus_tag="SFZ84_000218"
     CDS             complement(27435..27731)
                     /gene="fliE"
                     /locus_tag="SFZ84_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG8202389.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            complement(27738..28232)
                     /gene="flgC"
                     /locus_tag="SFZ84_000219"
     CDS             complement(27738..28232)
                     /gene="flgC"
                     /locus_tag="SFZ84_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG8202390.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            complement(28242..28673)
                     /gene="flgB"
                     /locus_tag="SFZ84_000220"
     CDS             complement(28242..28673)
                     /gene="flgB"
                     /locus_tag="SFZ84_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG8202391.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALINRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            complement(28754..29755)
                     /gene="mltG"
                     /locus_tag="SFZ84_000221"
     CDS             complement(28754..29755)
                     /gene="mltG"
                     /locus_tag="SFZ84_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG8202392.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSVKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            29670..>29909
                     /locus_tag="SFZ84_000222"
     CDS             29670..>29909
                     /locus_tag="SFZ84_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202393.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTE"
BASE COUNT        10188 a         4126 c         5048 g        10547 t
ORIGIN      
        1 tttttagaaa atgcattttt acttacttta gcaaacaatc ttgacaagca agcagagtta
       61 gataatctag caaagcctta tttaaatcaa aatgacaatc ttaagcgact tagtgctctt
      121 tatgctttaa attcaaatga tatcaacaat gctcaaaaac ttatgaaaga gcttttaaca
      181 aaaaaggata gtgatcctag aaatttagag ctttatggtg atattttggt taaaaaaaat
      241 gatttaaaaa atgctacaaa atactataga tctgcttata atcaagtgca aaatgaagaa
      301 attttattta aactcatagg aatttatgcg attttgaatg atactttaaa tattaaaaat
      361 gttttagaat tttcaagaaa aaccaatggt tgcactctca aaacttgcgt cttgcttgct
      421 aaaatttatt ttgatgaaaa aaatatcgaa gctttaaaaa gtatatataa agagctttat
      481 caacttacca aaaataaaag ttttgtattg gctttagttg agcttttaaa ttctcaaggc
      541 aaaacagaag aagctttaaa aatttctttg cagtatgatt tagatgatga cattaaactc
      601 gctttgtatc agaatttaaa acgctttgat gatgctaaaa aaatgagttt agctctttat
      661 cataaaacaa aaaataaaga atatcttcta cgagcggcag tttttgaatt tgaagctgca
      721 aatgaagcta aaaaaatcac tccaaaagta attgattctg taaaagaaaa attcgaacag
      781 gctatcgata aagatagcaa tgctttgtat ttaaactact atggatattt gcttatagat
      841 tatgatttag atgttaaaaa aggtatagag cttgtgaaac ttgccttaaa aaaagagcct
      901 caaaatttat actatttgga ttctttagcg tgggggtatt ataaacaagg tgattgtaaa
      961 aaggcttggg aaattttgaa gcaaacttta gaggataaag aatttgcaaa ttctgatgag
     1021 agcaaggctc atgcaaaagc aataaaggcg tgtattaaac catgatttta gataaaattt
     1081 ttgaaaaaac taaagaagat ttaaaagagc gtaaggcgca actgccttat gatatgttgg
     1141 gacgatcttt agcgtcgaat cctttttttc ctaaagatgt taaagctgct ttaaaaagaa
     1201 tagaaaatga agtaagaatt atcgcagagg ttaaaaaagc tagtccaagt aaaggggtta
     1261 taagggaaaa ttttgatcct ttagatatag ctttaaaata cgaaaaaaat ggagctgctg
     1321 ctatttcagt tttaacagaa ccgcattttt ttcaagggag tttagaatac cttagtatga
     1381 tacgccgtta tacgcacact cctttgttgc gaaaggattt tatttttgat gagtatcaaa
     1441 ttttagaagc tttggtttat ggggcggatt ttgtattatt aatcgctaaa atgctaagca
     1501 tgaaagagct taaaaaactg cttgagtttg caagacattt aggtcttgag gctttggttg
     1561 aaattcacga taaagaagat ttgagcaaag cgattttttc aggagctgat attataggca
     1621 taaatcatcg caatttggat gatttttcta tggatatgaa tttatgcgaa aaactcatcc
     1681 cacaaattcc aaattcaaaa attattatcg cagaaagcgg tttagaggat aaagattttt
     1741 taaggcattt gcaaaattta ggcgttgatg cttttttaat cggagaatat tttatgcgtc
     1801 aaaacgatga aggagaggct ttgaaagcct tgctttaaaa ggataaaaat gcagtatttg
     1861 tatgcaccat ggcgaagtga gtattttgaa aaagaaaaga gcgagtgccc tttttgtgat
     1921 tgtgctaata aaatcaaaag cgacgaagaa ttaggagtga tttttagagc taagtattgt
     1981 tttggcgtga tgaaccgcta tccttattct gcagggcatt ttatgataat accttatttg
     2041 catgaagagc atatagaaaa tttaagtgat gaagcttggc aagagataag tcaatttgtg
     2101 cgtctagggg taagaatttt aaaaagtgaa ctccatgcag gtggggtaaa tatcggtatg
     2161 aatttaagta aagatgcggg tgctgggata gctcctcatt gtcattatca cctagtgccg
     2221 cgttgggtag gggatactaa ttttatcacc actataggag agactagggt ttgtggtacc
     2281 aatatagaac aagtttatca aaaacttgtt ttggcgttta aaaatgttaa atgaagtaga
     2341 ttttgcagaa tttcaaaaag aaaatttctc tcttttaatc gatgcaagaa gccctagaga
     2401 atttttgcat tctcatttga taggagcttt aaatttttat gctttaaatg atgaagaata
     2461 tcaagaaata ggaacaattt ataaaaaaaa tcaagctttg gctaaggcta ggggtgcgag
     2521 ttatatttgt caaaatatgt caaagcatat cttagagctt gcccacaaat tccgtatagg
     2581 agataagatc ggaatttact gctctcgtgg gggtttgcgt tcaaaatcta ttgcagtgat
     2641 tttgagcgaa ttgggctata gagtggtgcg tttaaagggt ggctttaaag cttatagaag
     2701 ttttttggcg cattattttg ataatgaaat aaatttagat ttttttgctc tttgtggtaa
     2761 tacaggctgt ggaaaaacag aacttttgga gcttttgccc catcatttaa atttagaaaa
     2821 aatggcaaat catctaggat catcttttgg tgatatttta ggaaaacaac ctacgcaaaa
     2881 agcttttgaa gcaaaccttt tttatacttt aaactcttta aaagatttta tctttataga
     2941 gagcgaaagt cgtaaaatag gtgaaatagt tttaccttta aagctttatg aaaaaatgca
     3001 aaaagcattt aaaattcatt gtttttgttc tttagaaaag cgcatagaca ggatacaaaa
     3061 gatctatcaa gaaaaaatga ctcctttaaa atttaaagaa tgtcttgcta agatcagtcc
     3121 ttatatcagt gtaaattttc gtcaggattt gctaaaaagt tatgagcaaa gagaatggca
     3181 aaggcttatt gctttgcttt tggcttatta tgataagagt tataaaaagc cacaaaaaat
     3241 agattttgag ctaaacactg atgatatctt caaagccaaa gaagagcttt taggctattt
     3301 taaaacgcaa ttgctttttt aatactagat aatttctact tttaatttaa aaaaaacttt
     3361 taccaaatca tcaaaatttt ctttattatc ttgcaagaat tcttttttat tgttttggtt
     3421 tagccccaaa tttttatttt aatgctagta aatttgaatt atagagaagt aaaatatttt
     3481 ttaaaatacc tatttatagt aatttaagat aaaaaaataa attttgataa aaaaaatata
     3541 taaaatattt cttaaattta tattttttta aaccatttta aatataatta tctcgcaatt
     3601 aaattttgta agaaaggaca ggtaaatgaa tgcgataaat tcaagtttta ttgtgttgtg
     3661 tactttgcta gttttgctta tgactccagc tttggcaatg ttttattcag gtatggtaag
     3721 aagtaaaaat actcttaata ctataatgaa ttgctttatt gtttttggtg ttattacttt
     3781 acaatgggta gtgcttggat ttagtctttc ttttggtaaa gatgaaggac ttgggcttgt
     3841 aggaaatttc gagaatttcc tcttagaggg tattagcgga tacaacgctt caggcgttcc
     3901 aaatattctt tttgtgattt ttcaaatgat gtttgcactt attgcatctg ccatcataac
     3961 aggctctttg gtgggaagaa ttaaactggg tgttttggtg atatttctac ttttttggag
     4021 tactttagtt tatgatgtgt tagcacatat gatttggagc agtgagggat ttttgcttaa
     4081 aagaggaagt cttgattttg ctgggggcgg tgttgtgcat attagctctg gggttgctgg
     4141 acttgtagga gctttgatgg taggcgctag aaaaagtgat gatgaggata aaaacgcgca
     4201 ttctattcct tatgctttct taggtgcgat tttgcttttt ataggatggt taggttttaa
     4261 tgctggaagt gctggcgaaa tgaatgatgt tgctatcaat gcttttatag taagtattat
     4321 atcagcagct tgcggctttt tatcttgggt ggtacttgag tggctcatcc ataaaaaacc
     4381 gactatttta ggtggactta gtgggcttgt agcagggctt gtgggaatta ctccagcttg
     4441 cggttatgta gatatttatg cttctcttgt tatagggact ttgtcttctg tgttttgtta
     4501 ttttggttta agttttatta aatacaaact caaatgggat gattctttag atgccttttc
     4561 tttacatgga atcggaggta tttggggagg aattgccaca gggctttttg caagtgctaa
     4621 agtaaatcct aatgtgattg cccaaaatgc acttggcgag ggatttttta tcagcggaag
     4681 tttggaactt ttaaaagagc aaatttttgc tattgtgatt tgtgtggttt tgtcagctct
     4741 tataagcttt gttattttta agattatctc ttgttttaca gacttaagag taaaagaaga
     4801 agtagagcaa aaaggcttag atgtgagttt gcacggagaa aaagcttata ctttagctta
     4861 gttggctaaa tttttactaa aaagtccttg taatcataaa caaggacttc aaaatcattc
     4921 ttaattaaaa tcagacaaat actttaaaat aaagtggata aattcatcac tatcatttgg
     4981 gcaagtgatt aaatcataat cgcactttgc taaatgttta tactccatac ctagctcaaa
     5041 aatcgtttca gaacaatcaa tgcaaaaaga aatagggtaa atcagagctt tatcgtttaa
     5101 atttgccaaa acatcgcttg tatttggttc aagccatttt acagggccta gtttagactg
     5161 ataagctaaa ataaattcat caaaatgatc ttttagcttt tcttttaaaa tttctacatg
     5221 atcatttaca tgcttttcat ataaatcacc tttatcaata atgctttgtg gtaaagaatg
     5281 cgctgaaaaa atcaaaattt tggcatcaaa tttacttttt ttagccaaaa tgtgcgaaac
     5341 tatcatctcg ttataaagct catttttgta aaaaatatct atagttttta cttttgcttg
     5401 aattttttgc tttgaaattt cattttgcag aacttctaaa gatgaagtta ctgtggtgca
     5461 agaatggtgc ggataaagtg gaaaaagaat gatttcatca cttgcattta aagtgtattt
     5521 ttgcaaaatt tctgtggcaa aaggaggaac ataaagattt acaaaatcaa atttaaattc
     5581 atcttgtttt aaattaagct tgtcacacag gctttgagta agttcgttta aaggggattt
     5641 tccgcccatt tttttatagt tttcttgcat ggctttaacg cgagcctttg ttatgatcca
     5701 tgctacaaat tttcttaaaa atcgattttt gattcctaaa atataaggat cattaaacat
     5761 attttttaaa aaaacttcac aatcttgtaa attcgtagct ccgcccatat ttaaaaataa
     5821 aactaatttc acgcaaacct ttctaaaatt tcttgaactt tgtaagcatc gctcgtgctg
     5881 gctaaatgat tgggttgatt atcgataagt tttaacaaag cttcgtgttc tgaaaaaagt
     5941 ggactttgtt gagtaagttc tataaaattt ccatctttta ataaagaaaa gtcatttaaa
     6001 ttggcttcat aaaaatgatt tttagtaata agatgaattt ttcttagttt ttgtgtgcta
     6061 ttccaacttt gatgtatgct agcaatacat ttttcaagct cacatagaat aatgctttca
     6121 ctttctcttg tttgatcttg ggtgtatttt ttaagcaaat tggtttttgt tatttcttgt
     6181 ttgcttaaaa aacaaagcaa atcaagatca tgcacagcca aatcttgcaa aatccctaca
     6241 tcgctgattc tttgtgggta gggtgaaaat ctttgtatgt taatgctgat aatttcttca
     6301 ttttcaagct ctttttttag ggctaaaacc gcaggattaa atctttcgca aaaacctaca
     6361 cctactttta tgctgtattc tttagctaaa tttgaaattt cgtctatttc ttttaaattt
     6421 agagctaaag gcttttcgat taaaacgcat ttgcattgtt taaaaacttt ttttgctatt
     6481 gttaaatgtg aatttgtagg tgttgctatg atgataatat cattattttg atttaaaaat
     6541 ttatccagat catcataaaa aatatcatca aaaatattta ggtttggatt tttgcaaaga
     6601 tcaaaaagtg cattaagttt aaaatgagaa tttttactaa gttcatttaa gtggttttgc
     6661 cccatttttc caaggcctat gatacctatt ttcatggaat caatctttaa aaatacaaat
     6721 aacttgctct tgctcttctt cacttaaaaa aggtgaaaaa ggcaaagata agatgtgttc
     6781 gcttgcgtat tctgaatttt taagttctaa atttgaaaac tcactaaagc aaggttgttt
     6841 atgcaaaggg gttggatagt gtatagcata aggtatatta gctttttcaa atttttgcaa
     6901 tacactagct ctatcttcaa ctaaaacgct gtattgtgca taagcactaa aagcatttgg
     6961 attaatttgt ggaatttggc agttttttaa atttgcatta taaatttgtg ctaatttttg
     7021 tcttttgtct aattcttttt ctaggtattt taacttaaca tttaaaatcg ctgcttgtaa
     7081 ggtgtcaagg cgtccattta tacctataaa ttcatgttta taacgctgag tttgtccgtg
     7141 attgagtaaa attcttattt ttttagcaat ttcatcatca tggcaaaaaa tagccccgcc
     7201 atcgccataa gctcccaaag gcttcgaagg aaaaaagctt gtgcatgaaa ttttagctat
     7261 agagcaggat ttttctcctt tgaaacttgc gccaaaactt tgtgcaccat cttcgatcaa
     7321 agtgatattt ttatctttta aaatttcttc taaagccctt aaatcactca tttgtccaaa
     7381 catactcact gctataacag ctttagtttt tggagttatt gctttttgca ctgctttaaa
     7441 atcaagattg taatttgata aatttatatc tacaaaaaca ggttttgcac ctaccaaggc
     7501 cacaacttca gctgttgcta tgaaagtaaa actaggcact ataacttcat catctttacc
     7561 aatatctaag actcttaagg caaggtataa agcactagtt ccacttgagc aacctatagc
     7621 gtgtttaaca cctaagaaat gagctaaatt ttgctcaaat tcgttaagct ttgcaccgcc
     7681 tatgaaagaa gagcttgata aaacgctttc aatttcagca ttgatttcat ctttgtatgc
     7741 gcgatattgg gcttgaagat tgataaaatt cataaaaaac cttagagaaa taaaattaaa
     7801 taaaaatgtt tattgtattt tagttttact taatttaaag taattttggt atgatatgtt
     7861 tttataaaaa tttctttagg aaaattcatg gatattagaa aagcttattt ggattttttt
     7921 gcatcaaaag gacatgagat aaccccgtca agtcctttag ttcctgatga tgcaacttta
     7981 ctttttacca atgcgggcat ggtgcctttt aaaagtatat ttacaggaga aattccacgc
     8041 ccaaaccctc cacgcaaaac aagctgtcaa acttgtataa gagcaggtgg aaagcacaat
     8101 gacttagata atgttggcta taccgcacgc catcatactt tttttgaaat gcttgggaat
     8161 tttagttttg gagattattt taaagaacaa gccatagctt atgcttggga atttgtaact
     8221 gaagttttaa aactacctaa agataaactt tatgtaaccg tgcatgaaaa cgatgatgaa
     8281 gcttttaatc tatggcaaaa acacattcaa aaagaaagaa tttacaaatt tggcgataaa
     8341 gataacttct ggcaaatggg cgatactggt ccttgtggtc cttgtagtga gattttttat
     8401 gaccaaggac aagagcattt taactcaagc gaagattata tgggcggaga tggagataga
     8461 tttttagaaa tctggaatct tgtttttatg caatacgaaa gaagtgctga tggagtgctt
     8521 agcccactgc caaagccaag cattgataca ggaatggggc ttgaaagggt aacagcgatt
     8581 aaagaaggta aatttagcaa ttttgatagc tcgcttttta tgccaatcat caatgaaatt
     8641 tcaaaacttt gtaataaaac ttatgtttat gaaagcggag caagttttag agtcatagct
     8701 gatcatataa gatcaagtgt atttttgctt gcacaagggg taagttttga taaagaaggt
     8761 agaggttatg ttttgcgtcg tattttgcgt cgtgctttaa gacatggata tttgctaggt
     8821 tttaaacaag cttttatgta taaactagtt gatattgtgt gcgatttaat gggcggacat
     8881 tatacctatc ttaatgagaa aaaagacttt gtaaaagaac aaattcgcct tgaagaagaa
     8941 agatttttaa gcactataga aaatgggatt gaaattttta atgaagagct taaaaacact
     9001 aaagaaattt ttagcggaga agtagccttt aagctttatg atacttatgg ttttccgctt
     9061 gatttaacgg ctgatatgct aagagaaaaa aatcttaaag ttgatgaaga aaaatttgaa
     9121 cttttcatga atgagcaaaa agcacgcgct aaggcttctt ggaaaggaag tggagataaa
     9181 actgcaagcg gagattttaa aaacttactt gaaaaatttg gagaaaatca tttcgtaggt
     9241 tatgaaaaag cagaatgcga aagtaaaatt ttagcccttt tagatgaaga ttttaaagaa
     9301 gtttccaccc ttaaagatgc gggttgggtg atgcttgaaa acacaccttt ttatgcaaca
     9361 agtggggggc aaagtgctga tagtggattt atagctaagc gtgaagtttt agatacgcaa
     9421 aagtttttta atctcaatct tagctttata aaagcaggcg aagaactaaa agttaacgat
     9481 atagttcatg caagaatcga tacagaaaaa agagagcaaa tcgcacgcca ccactcagcc
     9541 actcatcttt tacatcatgc tttaagagaa attttaggtt ctcatgtaag ccaagcagga
     9601 tctttggttg aaagcaataa actaagattt gattttactc atcataaagc tttaaacaaa
     9661 gaagagctag aaagcattga aaaaagagtc aataaaatga ttataaactc aagcgaagct
     9721 atcttagaaa atatgccttt agaagaagct aaaaaaagcg gtgctatagc attgtttaat
     9781 gaaaaatacc aaggcaatgt gcgtgtttta actctaggtg aaagcaaaga actttgcggg
     9841 ggaactcatg ttaaaaatac tgctcaaata ggaagttttt acatagttaa agaaagtggt
     9901 gtgagtgctg gggtgagacg cattgaagct gtagtttcta aagcggcttt agaatttgta
     9961 aaaaatcaac tcgaagaact ttctaaagta aaagatgaac ttaaaaataa tgatatttta
    10021 agcggggtta aaaaaattaa aaatgaaatt ttaagtttaa aaaatgagct taaaaactca
    10081 agtaaaacag agcttgattc taaaaatatc caaggtgttg aaatttgcgt aaagcgtata
    10141 gataatggcg atattaaagc tatgattgat gattttaaaa acaaatttgc taaagcggtg
    10201 attttactta tccaagtgaa agatgaaaaa atcactttag cagctggtgt taaagatgca
    10261 cctttaaaag caggagcttt ggttaaagaa gcggcgcaaa ttttaggcgg aaatggcggt
    10321 ggaagagatg attttgctac tgcaggtgga aaagatttaa gcaaaattga tgaagcttta
    10381 aaacaaagct tagaaacgat agaaaaagca ctttaatgtt aattcttgct tcaaattcca
    10441 tttcaagggc taacttgctt aaaaccgcaa agattgattt taagcaagtt agttttgatt
    10501 atgatgaaaa tttaaataaa aatatttcac cttttttata tgttcaaaaa atagttcttg
    10561 aaaaagaaag acaattttta agtactttag gcaaagattt tcaaaaccaa aatttgcttt
    10621 ttgcagatag tatagtttgt atagatgaaa aaattcttac caaaacaaag gataaaaaag
    10681 aagcttatga aatgcttgcc ttgcaaaatg gaaagtatgc aagtatttta tcggcttttt
    10741 tgcttgtaaa acctgaaaaa agagtttttt ctctttcaaa aactacgctt tattttaaaa
    10801 attttgatga aaatgcttta agagattatg tagaaaatga tctttataaa ggcaaggcgg
    10861 gttgtattat gtgtgagggt tttcatcaaa atttcatcac ccaacaagta ggaaatctaa
    10921 gcactgcttt agggcttgat atccaaactt taaaggctta tttatgaaaa tattaaaata
    10981 tattttttca ttttttactc ttttgtttat agctggattt atttatgcgg cttatctttt
    11041 cacaagtgtt gatactgagg gttatacttt taaagaatat aaacctcctc ttacaacaca
    11101 aatttatgat agaaatggta agcttgtggc taatattttt gaacaacatc gtttttatgc
    11161 tccttatgaa gagcttcctc cacgccttat agaagctttg gttgctatag aagatacaag
    11221 cttttttgaa cataatggag ttaatatcga cgccattttt agagctgccg taaaaattat
    11281 aaaaagtggt ggaaaaacca tggaaggagc ttccactctt actcagcaat ttattaaaaa
    11341 cacggaatta accccagaaa aaactattac gcgtaaaatt cgagaagctt tgcttgctta
    11401 taaaatggaa accattttaa ctaaggaaca aattttagaa aggtatttaa attttatctt
    11461 ttttggacat gggtattatg gagtaaaaac cgcagctttg gggtattttc ataaaaattt
    11521 aaatgaacta agccttaaag agattgctat gctagtaggt atgccaaaag cacctagcag
    11581 ttatgatcct acaaagcatt tagatctttc catctcaaga gcaaataatg ttatttcaag
    11641 aatgtataat ctaggttgga tttcaaaagc agattatgat acagccatta aagaaattcc
    11701 gcaagtttat gatgatacgc ttactcaaaa tgctgctcct tatgttgtag atgaagtgat
    11761 taaacaatta agccctaata tcaaagactt aaaaacaggt ggatataaaa tcattttaaa
    11821 tatagactta gatgttcaaa atatggcgca aaatgcttta aaatttggtt atgatgagat
    11881 agtaaaacgc gataaagatg caaatttaag cactttaaac ggagctatgg tcgtggtaaa
    11941 tcatcaaagt ggtgatgttt tagctttggt aggcggggtt gattatgaaa aaagtaatta
    12001 taaccgtgct actcaaagta tgcgtcaacc tggaagctct tttaaacctt ttgtgtatca
    12061 agtggcgatt aatttaggat attcgcctat gagtgaaatt gctgatattt ctagaatttt
    12121 tgaaggtgga gcgggtaata atgaggattg gaaacctaaa aatgaagggg gtaaattttt
    12181 aggtttaatt accttaaaag aagctttaac aagatcaaga aatttagcta ccattaatct
    12241 cgcacttgat atggggctgg atgttcttta ctctaagcta atggaatttg gatttaaaga
    12301 tataccgcct aatttatcaa tcgtattggg aagttttggt atttctcctt tggagtattc
    12361 gaaattttat accatgtttg ggaactatgg tacgattaaa gatcctcaaa ttatcagaca
    12421 agttcaggat aaaaccggta aaaccatcat ggaatttaac tcaaatgagc gtaaagtcag
    12481 cgatgaagcg caaagttttc tggttttaga tatgatgaga aatgttgttg aaaaaggcac
    12541 agggcgtaat gcaagagtaa aagatataga aatagcagga aaaacaggaa caacgaataa
    12601 aagtgttgat gcttggtttt gtggacttac gcctgaaata gaagcaatca tttggtatgg
    12661 aaatgataac aacaagccta tgcgttatac agaaggtggg gctagaacag ctgctcctgt
    12721 gtttagagaa tttttaactc aatatataga aaaattccct gatacaacta gaaaatttag
    12781 cattcctaat ggagtttatc gtggaaatta taaaggagaa agtgcttatt ataccaccaa
    12841 atcaccatta ccaaaagcaa atatgaaatt taatgaaagc gagattatat tttgaaagta
    12901 gaaagatcta ctttcaaaat gattaagctt ttttgatgat tatttcatca tcttttgcat
    12961 caatgataat gctatcattt tcatgaagtt catcagcaag tatcatatcg cttaatttat
    13021 cttctataag atcataaata gctcttctta aaggtctagc gccaaaatca gggtcaaaac
    13081 catctttagc gattaaaagg gctgcatttt cgcttaaact tgcttttatt cccttgtttt
    13141 ctaagctcat ttgtaaatct ttaaataaaa gcttgactat ttcataagct tcatcttttc
    13201 caagtggatt aaaggtgata atatcatcta aacggtttaa aaactcaggt ttaaagaaat
    13261 tttttaactc attttttacc gcatcttctt gttcttttcc acttaaattc ataatggcac
    13321 ttgaggcgat attagaagtt agaatgataa tggtattttt aaaatccact gttacacctt
    13381 tgctatcggt tgctctacca tcatctaaaa tccctaaaag cacattaaat acatctttat
    13441 gtgctttttc aacttcatca aacaaaagca cgctataagg ttttcttcgt acggcttcag
    13501 taagctctcc accttcttca tgtcctatat atcctggagg cgcacctaag agtcttgaaa
    13561 cactatgttt ttccataaat tcactcatat caaagcgaat cattgctttt tcatcatcaa
    13621 ataaaaattt tgccaaagct ttagccgatt gtgtttttcc tacccctgtt ggccctaaaa
    13681 ataaaaagct tcctataggt ttattgtccg cattaagccc tgctttgtta cgtttaatgg
    13741 ctctagctaa agcacttaag gccttatctt gtcctatgac actttctttt aaatgttttt
    13801 ccacttctaa gaatttttgt ttttcagaag ttaacatttt ttgcacgcta atacccgtcc
    13861 atttgcttaa aattccagca accaaatcct catccacttg atttttaagt aaaactccat
    13921 tttcactcat ttttttccat ttatcttcta agatttctac ttctttttca agacttggaa
    13981 tttttccata ctctagctcg gctgcttttt gaaattcacc tctagcttta gccaaagaag
    14041 cttcattttt aagcagatca atttcttttt tcttagcact tatgccatca aaaacacttt
    14101 tttcattttc aaactgtgaa tttagggcat tttgtttttc ttttaaatta gctagttctt
    14161 ttgcgatttc atcgagtctt ttttgatttt tttcatcatt ttccattttt aaagcttcat
    14221 tttcaacttc taaagtttct atatctttgc gtacttttct taaagaactt ggttcgcttt
    14281 caatttgcat ttttagttca gctgcagctt catcgattaa atcaatggcc ttatcaggta
    14341 aaaaacgatc tgttatataa cgctttgaaa gtttagctgc ggctactaaa gcactatcat
    14401 ttatggttac attatgatga atttcaagct tttcttttat accccttaac atagccaaag
    14461 cctcattaac acttggctca cctacattta caggttgaaa acggcgttgc aaggctgcat
    14521 ctttttcaaa atatttacga tattctttta aagtagttgc acctatggta tggagttcac
    14581 ctcttgcaag agcaggtttt aaaatatttg ccgcatccat gctgccttca ctcgctccag
    14641 ctcctactat agtgtgaatt tcatcgataa aaagaatgat attttcactt tttatcactt
    14701 cattaaccac agcttttaat ctatcttcaa attctcctct gtattttgca cctgcaatta
    14761 aagcactcat atcaagagcg atgacttttt tattttgcaa agattttgga acatcttttt
    14821 taataattct ttgtgctaaa gcttctacta tagctgtttt tcctacgcct ggttcaccta
    14881 aaagtatagg gttgtttttg gttttgcgta ttaaaatttg cattaaacgt tcgatttctt
    14941 cttctctgcc tataacagga tcaagtttac cctcgcttgc ctttaaggtt aaatctatac
    15001 caaatttatt taagctgtct aaggtttcat cgcttgtttt gctatcgatt ttgcgtcccg
    15061 ctcttagact ttcaagctct ttttgaaatt ctcttaaatc taaaaattgc gccaaaattt
    15121 ctttaatagg acttttttga ctttcactta taagccaagt atccacactt aaataactat
    15181 ctccattagc actcattaat cctttagcat tttctaatga atttataagt tcattggaaa
    15241 agcgtatatt ttcacggttt acatttgaac tcgttgcaag ttttgaaatt ctgcttttaa
    15301 tttcaagctc taaggcttct ttagaaatat ttaatttatt taaaatttga tttaaaatac
    15361 ttgcattatc tacgcttaaa gcccataaaa gatgtaaagg tacaacttca ttatttttag
    15421 aatgtatagc taaagatgct gcactttcaa ggtttgaaag catattatca gttaaaaaat
    15481 cttgtatatt tgccatgttt tatcctttat ttagtttata tacttgctat tatataactt
    15541 tagtcatata atgtcaagtt aattgagtaa aattttttaa ataataggac aaatgactaa
    15601 ttttagatta tttcataaac atatctatag ccttgtttag ttcttttata ctttgaatat
    15661 cattttcttc tatagcatgt accatacaat gagctaaatg ttcttttaaa actacttttg
    15721 cagtattgtt aacttcggct tttacggcag caagctggat taaaatttca ctacagtctt
    15781 tgtcattttc aaccattctt ttaatagcgc ttaaatgccc tatggttcta cttagacgat
    15841 tgcaaactgc tttaagatgt ttttgagaat gtgtatgagt atgtttttct tggcacattg
    15901 tattaacttt ctttttggaa tttttagtct attttaacat atttttaaga atttaaattt
    15961 atttacgaag ttttaagcaa tttttattaa aatttactct ttaaactaat taaactaaaa
    16021 ctcaatgatg gagcttattt tgaaaacaaa acgatttttt gcgggtcttg caggctttgc
    16081 cactactttt attttatgtc tatttttaac aagtcattta caagctaaag ttgatcaaaa
    16141 agaagagcag gttcaaaaac gcctagaagc tttagataag cttacaaaaa ctcttgctat
    16201 agtagagcaa tactatgtgg atgatcaaaa tatcagcaat ttggtggata aatctttatc
    16261 aggactttta agcaatcttg atgcgcattc ttctttttta aatgaaaaag attttaatga
    16321 tatgaaaatt caaaccaatg gtgaatttgg tggccttggt ataaccgtag gtatgaaaga
    16381 tggcgcttta acagttgttt ctcctataga aggaacacca gcagataaag cagggataaa
    16441 atcaggagat attattttaa aaattaatga taaggccact ttaggaatta atctcaatga
    16501 tgctgtagat aaaatgcgtg gtaagccaaa aactcaaatc actttaacca tttttagaaa
    16561 aggtacaaca aaaccttttg atgttacact tacaagagaa attattaaga tagaaagtgt
    16621 ttatgcaaaa atgatagaaa atgaaaacat tctttatctt agggttacaa attttgataa
    16681 aaatgttgta gatgtggcaa gtaaagaact taaaaaatat cctaatgtta aaggagttat
    16741 tttagatctt agaaataatc ctggtggact tttaaatcaa gccataggac ttgtaaattt
    16801 atttgtagat aaaggtgtta ttgtttctca aaaaggacgc atcgcaagtg aaaatcaaga
    16861 atataaagcc gatcctaaaa acaaaatttc taatgcttct ttggttgtgc ttgtaaatgg
    16921 tggaagtgct agtgcaagtg aaatcgtaag tggagcttta caagatctta aacgcggtgt
    16981 tattgtgggt gaaaatactt ttggaaaagg tagtgttcag caaatcatac ctattaataa
    17041 aactgaagct ttaaggctta ctatcgcaag atattatctt ccaagcgggc gtactattca
    17101 agcagtgggt gtaaaacctg atattgaagt ttttccaggt aaagtaaata ctcaagaaga
    17161 tggtttttct ataaaagaaa gcgacttaaa acaacattta gaaagcgagc ttgaaaaaat
    17221 agataaaaat aaaaaagaag ataaacaaga aaataaagac aataaaaatc taatcagtca
    17281 aaaacaaatc aatgatgacg cgcagttaaa atcagctatt gatactatta aaattttaaa
    17341 tatcaaacaa ggacaataaa atgacaaaaa aagaaatgct ttacgaagga aaaggtaaaa
    17401 aacttttcaa aactgatgat gaaaatttac taattagtga gtttaaagat gatttaactg
    17461 cttttaatgc agaaaaaaga ggcaatgaaa gtggaaaagg tgcattaaac tgtaaaatca
    17521 gtactgaaat ttttcatttg ctcgaaaaaa atgggattaa aacccatttg gtagaaacta
    17581 taagcgatac agagcaagtg gttaaaaaat gtaaaattgt tcctattgaa gttatagtac
    17641 gcaatgttgc aacaggttct cttacaaaaa gactgggcat taaagatggc actgtgctac
    17701 cttttgcttt ggtggaattt tgtcttaaag atgatgcctt aggcgatcct tttatcaatg
    17761 atgagcattg tttgatttta aatttagtgc aaaatgaagc tcaaattagt gaaattaaaa
    17821 atatggctag aaagattaac tctattttaa ctccattttt tgacaataaa aatttaaggc
    17881 tgattgactt taaaatcgaa ctgggtttaa ctaaagataa tgaacttgtt ttagccgatg
    17941 aaataagccc tgatagttgt agattttggg ataaatttag taatgaaaaa ttagacaaag
    18001 atagatttcg tcaagatcta ggtaatgtaa aaatggctta tgaagaagtt ttaaaaagaa
    18061 tattaaatta aggaaaaata tggaagttat tgtaaatatt tctttaaaaa atggggtttt
    18121 agatccacaa ggcaaagcgg tggaaaaagc tttgcattct ttaaatttta atagtgttaa
    18181 agaagtaaaa atagcaaaac aaatcaaaat ttctcttgat gagaaagatg aaaaattagc
    18241 caaagaacaa gtaaaaaaaa tgtgtgaaga gttgttggta aatagcgtca ttgaagatta
    18301 tgagcttata attgagaaag agtaaaatga aagttgctat tattagattt ctagggacaa
    18361 attgtgaatt tgatacagct tatgcctttg aaaaacttgg agtaaaaacg cagattattt
    18421 ggcatgaaga aaaagaattt gatgcagatt tagttgtttt gccaggcgga ttttcttatg
    18481 gagattatct aagatgcgca gctattgcaa aacttgctcc tgctatgcaa ggtgttttta
    18541 atcatgcaaa aaaaggagga tatatcttag gtatttgtaa tggttttcaa attttacttg
    18601 aaagtggtct tttaaaaggt gcaatgaagc ataacaacaa tcttagcttt atctcaaaaa
    18661 accaaagttt aagagtggtt tctaatgata atgccttttt gaaaaatttc aaaaaagatg
    18721 aaattattag tttaccaatt gcccatggag agggaaatta ttacgctgat gagactactt
    18781 taaaagaatt gcaagataaa gatcttatta ttctaaaata cgagccaaat ccaaatggtt
    18841 ctgtatttga tatcgcagga atttgtgatg aaaacaaaaa aatctttgga cttatgcccc
    18901 atcctgagcg tgcttgtgaa aaagttctag gtaatgatgt aggtttaaaa atgcttaaag
    18961 gctttttatc ttgaaaattt tattaacttt aatttttagc attgttgtat tgtttggcag
    19021 gggtgaaatt tctgtattta gcggccaaga tgaaaatatg caaaaagaat tacaaaaatt
    19081 accccaagaa gaacaaaaaa tttatcaaaa tattccgcca agtgatgaaa acaatgactt
    19141 tgaaagcaat gtagatgatc cttttgtagc caaagggagt ttggttctta caaatgatga
    19201 atatccaagt agagtatatg ttggagaagt ttttcctatt acgatctatg ctcgcactac
    19261 ggaaaataca aaatttgatt ttaacataag cgtagaaaaa actaatttat cttttttaaa
    19321 tccagatgca aaatgggaat ttatcaacaa tgaatataaa acaactttat ggtttgaagc
    19381 caaaaattca aatgctagtt tgagtaaaat ttctatcaaa cttcttagaa ataatgaagc
    19441 ttttcaagag actgatatca atcttaatcc tatcaaattt gaaaatactt tatccaataa
    19501 ggatttttca caccttgtgg caagttcttt ggaaattaaa aaagttaaag cgagttattt
    19561 tgatgatgct aatatcatta tgatggtaga actaaacgca accaatacaa atcttaaaag
    19621 cttttttata gaaggaattc aaaagcaagg tattgaaaat ttaaaagggg attttaatgc
    19681 ttctagtgct ttttattatg ctattttgcc attaagtaaa acaaattttg aattttcgta
    19741 tttcaataag gacagtaaaa agcttgaaaa tataaattta aaactaaaaa ttagtgacga
    19801 tgagatcagc actcagagtg atttaaatcc tgtaaataaa gacttaaata tttataaaca
    19861 atatacctta tggtttttag cggttttatt tggagcttta tttgtatgga gaaaaaatta
    19921 cattattctg gctttggcag ttgtttgttt tgcacttagt tttcttgtag ataccaatac
    19981 tcaaaatgca attatcaagg ctggttctag ggctaaaatt ttacctacag agccttcaac
    20041 ttatttttat acggcaaatg cagatgaaaa agtagaagtt ttaggcaaaa gacaaaatta
    20101 tattaaagta ttgttttctg atggaaaaat aggttgggtt aataaagatg atttacaaaa
    20161 aaattaaagc tctttatttt tggatttttt ttgttttaag tgttgctttg gtgatttttt
    20221 gtttttgctt tacaaaatct caaaacacac tttggaaaat ccgcaaaatt tgggctaaat
    20281 ttcaaagata taccatctct tataaacaag aaatcattgg tacttttaat ccacaagctc
    20341 agatgatttt aatgaatcat caaagtgctt tagatatcat cgctttagaa gaattatatc
    20401 ctaaaaattt atgctggatt gccaaaaaag aattaggaga aattcctatt ttcaaagttg
    20461 ctatgaaaaa accaaaactt ctttgtatag atagaaaaaa tccgcgtgat ttggtacgag
    20521 ttttaaaaga agcaaaagaa agaattagtg aagatagggt tttggctatt tttccagaag
    20581 gaactagatc taaaaatgaa aaaatgctta aatttcaaag tggagcaaaa attttaagtg
    20641 aaaaattaaa tcttaaagtt caacccattt taattgtgga ttctgcaaaa attttagaca
    20701 caaaaagttt tagtgcaagc agcggagtgc ttaaaatcat ttgtatggat ttagtcgata
    20761 caaatgatga caaatggctt gaaaacacta gaaaaaaaat gcaagaatta ctcgatcaag
    20821 aaagagctaa gctttgctaa ataccctttt agttgttggt tttgggggat ttataggagc
    20881 aatcttaaga atgctttcta taaatttagt gaataaattt tttccttatt ctatcagttt
    20941 tggaactctt tttgttaatg ttttgggttc ttttatcata ggacttttgt tttcttatgc
    21001 acaaaataaa ggtttatctc ctttacttaa aagctttata agtacaggtt ttttaggagc
    21061 ttttacaact ttttctactt tttcttatca aaatttactt cttttgcaaa gtggaaatta
    21121 tcttcatttt gcgttaaata ttatcttaaa tgtctttctt tgcttatttg ccgcatggct
    21181 tggttttata attttcaaat aaatctttaa atttacttta gaatttgtat tttttgctaa
    21241 aataccactt taaaaaatta caaaggaagt taaaatgcaa tttcaaaccg aagtcaatca
    21301 gcttttacag cttatgatac attctttata ttctaataaa gaaatttttt taagagagct
    21361 tatttcaaat gcaagcgatg ctttagacaa acttaatttt ttaagcgtaa gtgatgataa
    21421 atataaaagc ttaaaattcg aacctaaaat tgaaatcaaa attgacaaag ataaaaaaac
    21481 tttaagcatt agtgataatg gtataggtat ggataaagat gatcttatta acaaccttgg
    21541 aaccatagca aaaagcggta ctaaaagttt tttagaaaat ttaagtggtg atgctaaaaa
    21601 agattctcaa ctcataggac aatttggagt aggtttttat tctgctttta tggtggctag
    21661 taaaatcgaa gttttaagca aaaaagcttt agatgataaa gcttatcttt ggagttctga
    21721 tgcaaatggt tatgagatta atgacgcaaa caaagaagaa caaggaacaa gcattacttt
    21781 atacttaaaa gatgatgagt ttgctaatac ttataaaatc gaaagcatta tagaaaaata
    21841 ttctaatcat attcaatttc caattttcat ggaaaaagaa gaatttactc ctgctaaaga
    21901 aggcgaagaa gaaggaaaaa ctgaacttaa aatttctcaa atcaataaag ccaacgcttt
    21961 atggagaatg caaaaatcaa gccttaaagt agaagattat gaaagatttt atgagcaaaa
    22021 ttttcatgat tcaaacaaac ctttacttta tcttcacacc aaaagcgaag gaaaattaga
    22081 atacaattct ttatttttca taccacaaaa tgcacctttt gatttattcc gtgtggatta
    22141 tcaaagtggc ttaaaacttt atgtaaaacg cgtatttatc agcgatgacg ataaagaact
    22201 tttaccaact tatttgcgtt ttgtgcgggg gattatcgat gtagaagatt taccacttaa
    22261 tgtaagtcgt gaaattttac aagaaaatca aattttaaaa ggtgttaaag aagctagcgt
    22321 taaaaagatt ttaggtgaac ttgaaaaact taaaaacaat gataaagaaa aatacttatc
    22381 tttctttaaa acctttggta aggtattaaa agaaggactt tatggttttg gcggagaaaa
    22441 agacagtctt ttaaaactca tgctttataa aagtaccaaa ggtgaaaatt tacgctcttt
    22501 agaagagtat aaaaatgacc ttcaaggcga gcaaaaggaa attttttata tagcaggaaa
    22561 taatgaaagt ttattaagaa cctctccttt gcttgaagag tataaacaaa aaaatataga
    22621 agttttactc atggatgatg agattgattc tttggtaact cctatgctag aatttgaagg
    22681 tttaaaattt gtagccatta atcaagtaga agataaaaat gaactaagcg atgaagaaaa
    22741 aaatactttt gctccacttg tagctaaatt taaagaactt ttaaaagatc aagttgaaga
    22801 tgtaagacta accagtcgtt taaaagatag tccaagttgt atagtttatg ataaaaataa
    22861 acctgatttt gctatgcaac aactcttaaa acaaatgggt caagaacaaa atttcaaacc
    22921 tattttagaa atcaatccaa aacacgctat ttttacaggt cttaaaaaca acgaaagttt
    22981 tagtgcagat atagcaaccc tagttttaaa tatggcaaaa ctaagcgaag gtatgggagt
    23041 ggataatcct gctgaattta atgcaagcct tacaaaaatt atcaataagg ctttttcatg
    23101 atagaaaata tccctgcaag tctttggaca aagcaagatt tgaacacata tcaaattttt
    23161 gatgtgcgta ctcctttaga atgggaagaa ggtattttac ctaatgcgca atgtgtggct
    23221 ttatatgata atcaagggct tttaaatgct aaatttttag atgaatttca aagcaaaaga
    23281 gatgaaagta aaaaacttgc ttttatttgt cgtagtggcc atagaagcat ggttgcagct
    23341 gaatttatag ctgaaaaatt gggacttgaa agcatcaatt tagatggcgg aatgctagcc
    23401 cttaagggtt attaatgcta ggaatttatt tacttatagc agctttgtct tttttagctc
    23461 tttattttgc tgttaaaaag cttactttaa atatagatga gcgaactctt ttagagccta
    23521 ttaaaatgga tatttatcca aaattttgtg atttaatcga tgaaaaaatc agagaattta
    23581 aagaaaatat ccaaaatgct aatttaacat taaaaaattc taatcaaaaa gatgaatttt
    23641 tagaaaaact tggggattta agcagagagt tgactttcat acaaaccatg aatttgagca
    23701 ataaaaacga tagtatctgg caaaatgaac ttttttcttt tttaaaagaa ttagaaaatt
    23761 tattgcttga gtatctagaa aaaggcgaag aagaagctga aaatttaaga gaatttctga
    23821 tggatgaatt tgaaaaacta aaaggttagg cattgcaaga agaaggaaat tctttaaaat
    23881 attttaaatt tatttcatga agtattttta ctttagttct gatttttatt ttaattcgtt
    23941 atgacgagct tgctaatctt ttagcaggag tggcaatatt tctttattgg aatgactaat
    24001 ttaggtatag gttttaaagt ttttagtggt gatttgcttg aaaaaatttt agcaaagtca
    24061 actgatacaa agataaaaag tatacttttt ggtactttaa gtactttaat tatgcaatct
    24121 tcaattttag tttctattgt tacgatttct tttttgagtg cagggcttat ttctttgagt
    24181 gcgggcatag ggattatttt tggagcaaat ttaggaaata cggcaagttc ttggctgatt
    24241 gttggtttga caaatattaa aatttcaatg ttggctatcc cgcttttgat tattggagta
    24301 ttatttttct ttcaaaaaga tagtatttta aaaaggtttg ggtaatattt ttattggtat
    24361 aggttttttc tttttgggtg tggattatat taaaagtggt tttgaaaatt ttaaacatat
    24421 aattgatctt tctcgttttg attttgctgg ttttaaagga gtttttgttt tttaggatta
    24481 ggtgctttgc ttacaggagt tatacaatca agcacagtta taatggctat tattgtcgct
    24541 gctttacttg cacaacaaat cagtttggaa aattccttag cagcaacttt gggtactagt
    24601 gttggaggag ttgtaacggc tgttttagct tctttaagta ccaatattga aggaaagaaa
    24661 ttagcgtttg caaattgtat ttttaatttt ggtatagctt ttttaatagt gcttattttt
    24721 ccttatttta tacattttct taatttttta tccattgtat taaacataga agatatagct
    24781 ttgaaagtag cattatttca cactttgttt aatttaattg gtgttgtgct tttttcattc
    24841 tttactcctc aaattgttct ttttttaaat aagatagtaa aagctcctaa agataagaat
    24901 aaagacaagc ctttatatct tgatagtagt ttggttaagt ttagtgacac agccatcgaa
    24961 gctttaagga aagaaagcga gcatctttat aacaatacct atgcaattgt tgctcatgct
    25021 ataggtttta gtcgtaaaga tatacaaagt gataaaagtt ttaaagaaat tttagaaaat
    25081 aaaaagtggt ttagtaaaaa tgtggatttg gactatttgt atcaaactag gataaaggtt
    25141 ctttttgaag ctattatcga tttttcaact aaagcacaag tttatattaa cgatgaaaca
    25201 aagaatcata aaatttttac ctttaagatg gcagctaaaa atttagccga aacaactaaa
    25261 aatttaaaaa ttatccaagc aaatattaag aaatattcta gttcttctaa tgaatttttg
    25321 gctttagagt acaataaaat tagatcgaat ttaggagagc ttttaagaag tatcgaagag
    25381 cttagagttg ttgaagatcg tgaaaagctt tatttgatta ttaaaaatct tcaaaaagga
    25441 aaagaaattt taaaagaaat cgatacttta accttgagca atgttgaaca tcttatttca
    25501 gtaagaaaaa tcacaacagc tgaaggaatt tcaatactta atgatacaac ttttgctgct
    25561 aagattgctg aagaacttat aggtgctgtt gaggtgatgt tttctaaaga tatatcaaac
    25621 tagttgtttg tgctagttta gttattgtct tgtataggcg ttagaaattc ttcattgatt
    25681 aaaatatcaa caacatcttt aaacataggc aaagcacttt gtgcagcata ataactataa
    25741 ggtttagtag gatgtcttac gagaactcct atggtatagg cgtgatttaa atcatttgca
    25801 aaaccaaaaa aggatgcatt gtagcgattt gaggtgtaac cttgtctttc ggctattctt
    25861 gccgttcctg ttttacctcc tgcaataata ccttgtgtaa ttgccttttt tcctgttcct
    25921 ttttctataa catttataag aacattttgc atcgttttag cggcttcgct agaaagaatt
    25981 ttttcttttt ttacatcatc atcaagattt gtaaagcgtc cattttgata gaatttttca
    26041 gctaaacgtg gtgtgatata aaacccatca ttgttgaaaa cattataagc tgcaaggagt
    26101 tgtataaagg ttgttttaag tccataacca taacttaaaa cagatttttc tatatctctt
    26161 aagcgcttag gatttggaat ttctcctttt tgttcatagg gtagatcaat accacttttt
    26221 tcgccaaatt taaatatttt aagccctgat acgatttcta tattgttaag tcttttagca
    26281 atttgtatca tgcctatatt tgaagaatat cttataactt cctccatagt cattttgtcc
    26341 attttgtgat cgtctttgat ggtgaaacgt cctagcttgt aagaaccgcc ataagtatta
    26401 atcacttcat ccatttttat tttaccaagt cttaaggctg ttgtaaagat aaaaggtttg
    26461 ataacagaac ctgcttcata gccgtattct atagcgcttg cattaagaac tgatagatcc
    26521 tttccgcgat tttgtgggtc ataacgcctt gagcttgcta gagctaaaat tcttcctgtt
    26581 ttactttcca ttaccccaac gatgatttca ttggctttta aatcctcatt tctttgatct
    26641 atagctttct ctatactttt ttgcagtttt aaagaaagat ttaaatataa atcacaacca
    26701 ttgatctttt tttgttgtag tgaatttaga tttaaaataa tatttccacc tatatcttta
    26761 agtccttgaa ttttttcatt ttgaacaggg cttagacatg catcgtagta tttttctaaa
    26821 cctttaactc ctatattttt taaaattcca ctttctggat ctaatatcat tttagtataa
    26881 ccgataatag gagtaaaaga atcttttgac atgtaaattc tatcttcttc atgttcgatg
    26941 atatttaatc ctcttgtttc aactcttcct gagttatttg taaaagcttt gaaaaaacct
    27001 tgtatataaa gttttttagc aagatcttta aggtagcttg cttgcttgga gtctaagttt
    27061 tgtaaaagaa caaaattata agagcgtttt ttttgatttt gcattctttt tttaatatct
    27121 gctacttgat cgttacttat cccactataa atttgaaaaa gctttaaaaa tagatcaaat
    27181 ttatctttgt taatgcttct aagatcaatt tcagcacgat aaatttgttt agaacttgtg
    27241 atagtaaaat tatctttggt tataatcgat cctcttagag caagagcgta ttgatctttt
    27301 tcagtgttag gtatatgacg ttttgatgta agaaaaaaag tagagctgat aaaaataatc
    27361 ataaacaaaa gtgccatgca gtaggcaaag gcaacttttg aaaccctatt ttttttatat
    27421 tcttgcatta gggtttaaat ttgagttctt gtgatttctt tataagcact gatcgcttta
    27481 tttcttactt ctagcataaa tttcatgctg ctttcagctt tagtgatagc tatagctgct
    27541 tgatgtaaat cttttacttg tcctgtggca atgtctgtca ttgcagcttc tccactttct
    27601 tgtgctttat ttaaatcatc gatttcattt ttaagcatct tggcaaattc atcaccaatt
    27661 cctgtggaat tttgactttt gttggtattt gaaatattat tatttaatct taaatcatta
    27721 atattgttca ttttttatta tcctcttaat aaatcaatcg cactttgagc tatagttttt
    27781 gcacttgtaa aagcacttac attggcttga taagctcttg tagcttcaat caaatctgcc
    27841 atttcaataa cagggtttac atttggatac gctacataac cttcagcatt tgcatcagga
    27901 tggcttggat catacttcat acgaaaatct ttgtcatctc tgaccacttt atccactaca
    27961 acactttgaa tagcaggttt agcttcttct ggcgaacttg gatcatttaa aggattttca
    28021 tattttaaaa aattattatc tttgttaatt tgctcattta aaagcttatc aaaatctgtt
    28081 gctttaaaga tcacttcgcg tcttctataa ggcccacctt cagctgttct tgtagtgttt
    28141 gcattagcta tattagagct aataacattc attctaaaac gttgagcact taaaccataa
    28201 ccactaatat caaaatcact taagtatgcc ataatttacc tttaacttaa tttagagctt
    28261 gcatcaagta tagaactaaa gatattgctc tgtcttctta aaactccatc aagagctgtt
    28321 atcataactg tatttttact catttctgta gtttctacat ctagatcaac agtatttgca
    28381 tcatttcttg ccaaatgacc atctcttaag taaatagtag atttactagg atcaggaaat
    28441 ttccaaggtt tttgatgccc ttcttcggtt actgccaatt ctaattcttt tttgtcattt
    28501 tttttgaaaa tttcatttgc acgatttatc aaagctgttt caaattcaat atctcttgct
    28561 ttataaaaag gagtatcaac atttgcaaga ttggcattga tgagttgatt tcttagattt
    28621 ctacccgcta aagcaccagt gactagttct tttgatttaa atgggttaat cattttttat
    28681 cctttttata atttttaata ttaacaagca aatactgttc caatttaact attttgtata
    28741 aaaatatcaa aaattatttt cctttttgta aatttatggc tttattgtga tcatctatat
    28801 ttgtgctaaa aatatgaact ccagtatttt tatcacgcac aaaatataaa taatctgtct
    28861 ttaaaggaaa aatagctgca cgaatagcag ctaaagaaac attacaaacc gcttctttag
    28921 gcaatcctgt aaatttatag gtattataag agctattatc ttgtcttatt ctttgtgggg
    28981 taacttttac atgggaataa attccataat ttaaagttcc atccatttga agtttcatac
    29041 cttttttaag tcgattgtaa attacgcttg caactatagg catttcattg tcattagcag
    29101 cttctttttg tattacagaa gcgatgatga tatattggtg ccattttttt ggattataat
    29161 caccaaaaat tttcacagaa gtttttttat tggaaatttc agcatggttt aaaagcattt
    29221 gaatgagtag attttctgta atgcctttcg ggattttata agtttctggt aaaaaaactc
    29281 cttcatcata aggagcttga gcttgaaatt cttttaaaag tatatcttta tcaagtccaa
    29341 gttgtttggc tgcttgttct agaaagatta cgcttgtttc tcctgggata agagtaatgg
    29401 tttgaagtgc tgctttagca atagtgagtt tatgtagaaa ttcagctcta tttaaatctt
    29461 ttgtacctat gttgatccag cctgattgag ggtgtcctaa aaaaaataaa atatatttat
    29521 caatattact catctgatat ttattttgct ttaaatatgt tataatttga gaaattgaac
    29581 cttggggaat aaataccaca gaattgcttt ttaaaggctg agttagataa taaaaaatcc
    29641 ccaaaataaa tatcaaaaag aagttgcgta tgaaaaagaa aattttatat attgttgtat
    29701 tttttgttgt gcttatatta gctttgttta tagtgcttaa aaatggaatt gtcatctcta
    29761 gtatccaatt tgatttttta aaattggaac aattatatat taaattagat aaaaaattaa
    29821 ttgtacgagc aaaaaatatc actataaatg agactcaaaa ttccgaaatt tcatcacaaa
    29881 cccactcttc tgataatgct tcaacagag
//
LOCUS       DARGED010000006        28532 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.006, whole genome shotgun sequence.
ACCESSION   DARGED010000006 DARGED010000000
VERSION     DARGED010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.006"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            21..548
                     /locus_tag="SFZ84_000223"
     CDS             21..548
                     /locus_tag="SFZ84_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG8202394.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            557..730
                     /locus_tag="SFZ84_000224"
     CDS             557..730
                     /locus_tag="SFZ84_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202395.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(731..1309)
                     /locus_tag="SFZ84_000225"
     CDS             complement(731..1309)
                     /locus_tag="SFZ84_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202396.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(1382..2272)
                     /gene="cmoB"
                     /locus_tag="SFZ84_000226"
     CDS             complement(1382..2272)
                     /gene="cmoB"
                     /locus_tag="SFZ84_000226"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG8202397.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(2355..4084)
                     /locus_tag="SFZ84_000227"
                     /pseudo
     CDS             complement(2355..4084)
                     /locus_tag="SFZ84_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(4403..4540)
                     /locus_tag="SFZ84_000228"
     CDS             complement(4403..4540)
                     /locus_tag="SFZ84_000228"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202398.1"
                     /translation="MQTTDEDPNINEDDKQASIDEASTQLSGNACIVSDNFKAGNPCS
                     R"
     gene            complement(4681..5004)
                     /locus_tag="SFZ84_000229"
     CDS             complement(4681..5004)
                     /locus_tag="SFZ84_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202399.1"
                     /translation="MTEGQENAQKTYDTAVNAYNEAVKAYNTALSGITGNNGDKVIAG
                     LKQAVDKVSSDLQQATIALQIATASTNSSLENSNKTLASASINGTSHLTVNENIVQTI
                     SQYPL"
     gene            complement(5006..5536)
                     /locus_tag="SFZ84_000230"
     CDS             complement(5006..5536)
                     /locus_tag="SFZ84_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HEG8202400.1"
                     /translation="MVGKYVTEYDSNNNHGRYFFTSTIEKPAYLYIYSPNDFFTSLAA
                     NGPSMTGATKSLVGTGAIKNRENYKETSDLIAKDNISNEVLNSIFNDLKFNSSVDISD
                     LSKFYKDGKILTADELTSINQSMDFITALYGQTQDSNNATFANALKEVLGNSYGDLGK
                     ANQVIIKTKEILSQNS"
     gene            complement(5713..6006)
                     /locus_tag="SFZ84_000231"
                     /pseudo
     CDS             complement(5713..6006)
                     /locus_tag="SFZ84_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853533.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutination protein"
     gene            complement(6374..8365)
                     /locus_tag="SFZ84_000232"
                     /pseudo
     CDS             complement(6374..8365)
                     /locus_tag="SFZ84_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8793..9168
                     /locus_tag="SFZ84_000233"
                     /pseudo
     CDS             8793..9168
                     /locus_tag="SFZ84_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
     gene            complement(9160..10350)
                     /locus_tag="SFZ84_000234"
     CDS             complement(9160..10350)
                     /locus_tag="SFZ84_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202401.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGIDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(10347..10955)
                     /locus_tag="SFZ84_000235"
     CDS             complement(10347..10955)
                     /locus_tag="SFZ84_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG8202402.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKNLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
     gene            complement(10952..11431)
                     /locus_tag="SFZ84_000236"
     CDS             complement(10952..11431)
                     /locus_tag="SFZ84_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8202403.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            11562..11696
                     /gene="rpmH"
                     /locus_tag="SFZ84_000237"
     CDS             11562..11696
                     /gene="rpmH"
                     /locus_tag="SFZ84_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG8202404.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            11693..12019
                     /gene="rnpA"
                     /locus_tag="SFZ84_000238"
     CDS             11693..12019
                     /gene="rnpA"
                     /locus_tag="SFZ84_000238"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG8202405.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLRDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            12016..12357
                     /gene="yidD"
                     /locus_tag="SFZ84_000239"
     CDS             12016..12357
                     /gene="yidD"
                     /locus_tag="SFZ84_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG8202406.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRVLRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAKKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            12354..13946
                     /gene="yidC"
                     /locus_tag="SFZ84_000240"
     CDS             12354..13946
                     /gene="yidC"
                     /locus_tag="SFZ84_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG8202407.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGVTMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            13943..14761
                     /locus_tag="SFZ84_000241"
     CDS             13943..14761
                     /locus_tag="SFZ84_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG8202408.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAKFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            14754..16082
                     /gene="mnmE"
                     /locus_tag="SFZ84_000242"
     CDS             14754..16082
                     /gene="mnmE"
                     /locus_tag="SFZ84_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG8202409.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            16093..18279
                     /gene="purL"
                     /locus_tag="SFZ84_000243"
     CDS             16093..18279
                     /gene="purL"
                     /locus_tag="SFZ84_000243"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG8202410.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKANFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            18276..19046
                     /locus_tag="SFZ84_000244"
     CDS             18276..19046
                     /locus_tag="SFZ84_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG8202411.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELSNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            19049..20581
                     /gene="purH"
                     /locus_tag="SFZ84_000245"
     CDS             19049..20581
                     /gene="purH"
                     /locus_tag="SFZ84_000245"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG8202412.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGVSKFIVGQKVFDTKYGENSHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRGFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            20680..21141
                     /locus_tag="SFZ84_000246"
     CDS             20680..21141
                     /locus_tag="SFZ84_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202413.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            21598..22122
                     /locus_tag="SFZ84_000247"
     CDS             21598..22122
                     /locus_tag="SFZ84_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8202414.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSLNDDTALLVDDTNEVKLCNEDARALV
                     TQCTEKIKISQENI"
     gene            22138..22257
                     /locus_tag="SFZ84_000248"
     CDS             22138..22257
                     /locus_tag="SFZ84_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEG8202415.1"
                     /translation="MQENVEVSEKNEEISKILLQVVDELKIVCHNLESELNQF"
     gene            22273..22707
                     /locus_tag="SFZ84_000249"
     CDS             22273..22707
                     /locus_tag="SFZ84_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG8202416.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            22806..23783
                     /locus_tag="SFZ84_000250"
     CDS             22806..23783
                     /locus_tag="SFZ84_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEG8202417.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIIENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            23780..24667
                     /locus_tag="SFZ84_000251"
     CDS             23780..24667
                     /locus_tag="SFZ84_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG8202418.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVTVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            24664..25536
                     /locus_tag="SFZ84_000252"
     CDS             24664..25536
                     /locus_tag="SFZ84_000252"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG8202419.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGIEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(25548..26894)
                     /locus_tag="SFZ84_000253"
     CDS             complement(25548..26894)
                     /locus_tag="SFZ84_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8202420.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENKHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGSPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            26943..28286
                     /gene="pif1"
                     /locus_tag="SFZ84_000254"
     CDS             26943..28286
                     /gene="pif1"
                     /locus_tag="SFZ84_000254"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG8202421.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDHNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            28296..>28532
                     /locus_tag="SFZ84_000255"
     CDS             28296..>28532
                     /locus_tag="SFZ84_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202422.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIG"
BASE COUNT         9952 a         3690 c         4780 g        10110 t
ORIGIN      
        1 aaaggcaaaa tgattaaaaa atgagaataa attataaaaa attatttaat ctaagaaaat
       61 tattaagtga tccgaaaaaa cttttttctg tattaatctt cactcttgta gttgttttta
      121 tccagaacta tattgcccaa aattctagtt ttgaaggaaa agtagttaga attattgatg
      181 gagatactat agaagttaat catgaaaaca aactcgctag aataagattt tttggtatag
      241 atgcaccaga acttaaacaa agttttggaa agcaatcaaa agaagcttta agtagaattt
      301 taagcggcaa acaagttgaa attatttata aaaataaaga tacttatggt agaattgttg
      361 ctattgtaaa gcttaatgat gttgatatta atcgattttt agtaagcaaa ggctatgctt
      421 gggctgatac ttactatagt aacgcttata ccaaagaaca agaaaatgct aagaaaaatc
      481 atttaggtct ttggaaagag agtaatccta tagagcctta taaatggaga aaacacaata
      541 aattctaagg aaaaacatga aaaaatatac tttaatggtg ctattagctt taggaatttc
      601 tggatgtttt gtaaatgaaa gagggatttc aaatcgtttt tatgatgatt gtaaagagta
      661 ttatgatgga agtggaactt atcataagga ttgcccaaaa aattgggtag atattaaaat
      721 gactccttga ttattttcca cccacagagg ccattaatgc agctgctaca gcttctggat
      781 tgttgatttt ggcaccttgt tcttgatttt ctgtaggttt aacagtgtta agtggcggac
      841 gcttgagttt aaatatatgc tcatcggtgc taacaacttg tatcgttcct tcaaacattt
      901 taacttcttt aacatgtcca accactttta catctctttt tttggaggtt tcgtcaaaaa
      961 gtgcatgagc ttcaagttct aaaacatcgc ctaatttaag cggagcataa aaaaaacact
     1021 ttgatccaat aatcactgaa aattctttat tgatagaggc ttgtgctaca tagtttgccg
     1081 cagcgaaaat aaaggcatca aaaatcaatc cttgatcatc tgctaccatt tcgcttgtgg
     1141 ttattaaaat tgatttggca tagtttttat caatttctat aatggttcca gcaagcgagg
     1201 tgtttaattc aggacaagtg agtaattctg ctctaacgcg agatatatct tctgcagatg
     1261 cgtattcttc aagttgtgca tattcttcaa aattatcttt ttttgccata tctaaccttt
     1321 aaattctact tatctacttc aaaatatcta attttcaata tcggtaaaaa ataaaaagaa
     1381 tttatatttt aatgcgtata taaactcttt tgggtgcttc atagccttca atggtaagat
     1441 ttttatcctt tggatctaag aaattttcca gcgaaaaaga gtctatccat tctgtttttc
     1501 tttgttcgtt ttcatcggtt ttttttgtag ccaaaacttc aaattcttta aatcctgctc
     1561 tttcacacca gttttttaat gcactaatgc ttggtacaaa ataaatattt ggaattttag
     1621 aataagtttt attaggcaca agagcgattt ctctctcatc ttctatatac atggtatcta
     1681 aaaaaacaac tccattttta ttaagtcctg cttttaaatc ttttagcatt tttataggat
     1741 cacttctatg ataaatcacc ccaagacaga aaatcacatc aaatttcaag ccatagcttg
     1801 gaagatcttc tacgcctaaa agttcgtatt ttataggagt tttagctaaa gcgttaatga
     1861 gttcaaattg caaacggtat ttgatagaag gatcaaaacc tatgagtttt gcaggattaa
     1921 attcaagcat tttaaacata taataaccat tattacagcc tatatcagca acgcattttt
     1981 gagaaatttc gttcatgaaa ggctttagaa tgttgaattt aataaaactt tgccattctg
     2041 tatcgatgaa aagatcgtct attttaaaag gaccttttct ccatggttta agttcttttg
     2101 ctatagctaa gatttcatct ttggcttgag aatttgtaga taaatttaca ctatcatcta
     2161 aagaaaaatt gcaagcaaga ttgagagctt taagttcttg aattttagcg tataaagggt
     2221 gatttagaaa ttgtttttca agtaaatttt cttgcatttt tatccttgac atttgctttt
     2281 aatgctaaat tataacatta aaagctttta tggcaatata aattatatgc attaaatatt
     2341 tgatcaaaaa taactcaaaa atactttcta aagattacat aagctttaga actataatca
     2401 tcatctagct tatacttctt taaagctcta gctaaatcaa gcttgacata aaaattccct
     2461 gttttattat aaagcagttg taaatcataa gcatctatat agtttgtata agaatcattc
     2521 tcataccaag aataacttat atcataaaaa ggagtaatat aaaaatcttt taaaggagta
     2581 gccattctaa gtccaaagct ggctactaca gcattatctc cttctccatc tccattatta
     2641 taagccctta ctccataagg acctcctaaa gatatggttt cactactatc taatgtagat
     2701 ccattgataa cttgttgata atttaaacta aaaagatgag taaaggtatc attaaggaaa
     2761 taagcattgt taagattgac attgagttta gcaaattttc caaattctac tccacctact
     2821 ttgcttgttc ctatacctac tatagtcata ccttcatctt taacattacc atagcttaca
     2881 ttagcactat aagaaaaact atcattacta atgccattat aaactccttc tataccaaag
     2941 cttattgtat cagagctttt atctatagtc atgatattta atcttgaatt actaagcttt
     3001 ttatgataat aacttgaagt taaataaaaa gaattataag tcgtaatccc caaaggatat
     3061 tttaaattta tacctagatt ttcagaaatt cctataaagt caaattctct ccaaattccc
     3121 cataaagcat agtttccttt agaatagctt cgagtgattt ttaaattccc caagaaagta
     3181 gtataattta taccatagtt agtttgtgct tcatcgcttc tttgcaagta agcattagac
     3241 tatctccttg atgagctatg ttattaaaac tcatgctagt accaccccta tatctgcctg
     3301 attcttttat accgtaatta tccccataaa acaatacaga aacaaagcta tcactagggg
     3361 tagtttctat cactatatct gtgtcaccta gattatctcc tgcttttaaa gaagcaaggg
     3421 tttgtatgcc atacatttca ttgactttat aaaccgcatc ttctactaat ttagtagtga
     3481 tgatttcacc tttatgatta ggtaatttgc tttctatagc ataatctctt acactagaat
     3541 tgttttgaac cacatattta cctaaaacac ctaaggtgat attgatttga atttgatctt
     3601 ttagttcttg ttgtgggata taagctgtag cagcaggata accactaact tgaacataat
     3661 aagaaataat attggctata tcttgtaagt cttgaactga aatactttct tttttgtaat
     3721 cgtttaaggc ttcttgtaaa acttgctcat ctaaacctag atctttaaag tttatgtttt
     3781 tattggtaat atgaaagtta aagctaactt tatgaattga ttcttcttta gaagtatttt
     3841 ttaaagaagg agtgtttgaa tttggggttt tagtttttaa agtattatca ttagacaagt
     3901 taggttgatt tttttgagtg ttgttattat ctttttgagt gtttttcttt gtgttagtgg
     3961 tttttgaatt attattatca ctagtattag aatgatctat gataatcact ccatctttta
     4021 cttttaaagt gttattgtag ttttttaagt tagcatcttc tttataagga gattgttcta
     4081 acatttgtat ggttttttat tatctttagt atcactagca taaaggctta agatagctaa
     4141 actagatagt aagataatgc gtttcatttg tgtttttcct tttcaatgat ttcataagag
     4201 cttgttttat agatttagtt tttaatcttt tttatttttt gctttttctg tttttatttt
     4261 ttctttcttt ttatcttttt atttttcttt attttttata tttgtttgat tgattatcaa
     4321 tcttttttga tttttaatct ttaaattttg ttttattaat ttttaacaag atccaaaagg
     4381 cttttaacct tttggaattt aattatcttg agcaaggatt tcctgcttta aaattatctg
     4441 atactataca agcattacca cttaattgag tgctggcttc atctatactt gcttgtttat
     4501 catcttcatt gatatttgga tcttcatctg tagtttgcat aaacaaagct gtagcaatgt
     4561 caggttcttg ttgtcctatg gtatcatttg ggttattatt agaactgttg ttgttaccat
     4621 tgttaatatc acctgaatcg gttccatcgt ttccgttgtt ggagttgtta gatcctaaat
     4681 ttataatgga tactggctta tagtttgcac tatattttca ttgactgtaa gatgactagt
     4741 tccatttatg ctcgcacttg ctaaagtttt attagaattt tctaaactag aattagtact
     4801 cgctgtagcg atttgaagag ctattgtagc ttgttgtaaa tcactagaaa ctttatctac
     4861 agcttgtttt aaacctgcaa taactttatc gccattatta cctgttatac cacttagagc
     4921 tgtattgtaa gctttaactg cttcattata agcatttaca gcagtatcgt aagttttttg
     4981 agcgttttct tgcccttcgg tcattttagg aattttgaga aagaatttcc tttgttttaa
     5041 taatgacttg attagctttt cctagatcac cataagaatt tcccaatact tcctttaaag
     5101 cgtttgcaaa tgttgcatta ttgctatctt gagtttgtcc atataaagca gtaataaaat
     5161 ccatactttg attaatgctt gttaattcat cagctgttaa tatttttcca tctttataaa
     5221 atttacttaa gtcgctaata tcaacactag aattaaattt caagtcatta aatatagaat
     5281 ttagaacttc atttgagatg ttatctttag caataagatc gctagtttct ttatagtttt
     5341 cacgattttt tatcgctcct gttccaacta aagattttgt agcacctgtc atagatggcc
     5401 catttgctgc taaagatgta aaaaaatcat tagggctgta aatatacaaa taagccggtt
     5461 tttctattgt gcttgtaaaa aaatatctac catgattatt attagaatca tattccgtca
     5521 catattttcc caccatagca atcccttctc gtactgtcat agtttctaaa tttataacat
     5581 ttcctgcatt ggatttaatt acaggtgata ttgttttagg atctccttca aatgctgaaa
     5641 gttttccatc ttttgcctta tcctatattg atgaagcaga cagaacaatt tttttgcatt
     5701 aatacttcca ccattgagtg ttccatctat aatgagagct tttagaacca taggcaatat
     5761 ttaaataatt ttggttagtt tttccttgtc caaaatttac agtttcacca cttgctatat
     5821 taaaaccacc accccattgg ataacagagt ttgttttgct tcctgagata ttcatagtgc
     5881 caccactaac acttatactt ccacttgttc cataagtgaa cttaccccca cttggtaaag
     5941 catagctttg tgtaaaaaga aagaacctat aactaaagac aaagaaagtt tatttaactt
     6001 tttcatgact tgctcctttt tgtaagatta agatttaaga atcttttgtt tatatttata
     6061 aaaatacaaa taaatcattc ctatctttaa gataggaatg atttatttta tccttgcgta
     6121 aatgcttttg ccatcttgag atattcttgc ttcataagaa agcttttgta aattcatctt
     6181 ttttaatcta tctatagaac ttagtttaaa atcttctttg ttttttgcat tttttcaata
     6241 aagctttgaa gttcttcttg atttaaagta ttagagtttt catctataaa accttgctca
     6301 ctttgtaaga ttaagatttc tttattttta aggtagggta ttactctttg agggtataaa
     6361 gagctaatac tccctagcta gaaatattaa taggagcatc gtatgacttc aaaaagggga
     6421 gttgtgttga ttttattgga tataagaaga taataatgct caaagttatt aataattcta
     6481 gcttcaactt tagtatttaa aatcagtcta ttgtttttac ttaaactgat atctgaagga
     6541 gttatagcat tagaagcact ataattatct tcataatgta ctaaggctcc tgctaatata
     6601 tcatgaaagt gtttttaaat atatttaaat tcccgcctat ataaggtatt attataagat
     6661 ttagcttcac ttaaacctgt aatggccgaa ggagctataa aaacagaatt gttattttta
     6721 tactcatcaa gattgagatt gtttatgatt aaggtattat catggccatt gtttgaaagt
     6781 ctagctataa tacttaaaat cccttctctt ttatctgaag ctacaccaaa taaagtatca
     6841 ttgataatga ttttattata agcagcttca ttataagcca taatcaaata agcattatca
     6901 gctgcattag aagaatagtt tttttatttc tatgatatta tgattggctt tatctaaagc
     6961 tcttatgatg attttagaac ctttatctat attacttgca tcagtaatgc tttgaacatt
     7021 gttataattt atagtattat aagaagcttc tttggcttct gttaatacag ttagatttct
     7081 aaaagaagca aaatctttaa tcgatacttt attgttatta gcactactag gataaaagtc
     7141 ttgattatta agaaggtttt tcttagctgt ataaatgtat acaggtaagg ttgacataga
     7201 attattaata taaactttat tataatcagc actgccttct aaggctctag cagctataat
     7261 atttaaagca tctttatagc tttgagaaag atcggttgtg gtaagatcgt ttttaatgtt
     7321 aatggtatta tgattaactc ctttagttgc aaagtcacca taaaaagaat gttggttata
     7381 acctaagaag ttattagcga tttctaaagg atgttttaat tctatgttta aggtattata
     7441 atttacttct ccattattat aagctcctgc gtagaagtta aacaaagctt gagcaaaaat
     7501 gttctcattg tttttatttt tttaggtttt taatatcttt taatattgat agtattatct
     7561 aaggcttgtc cttgttcggt ttttccaccc aaaaaatcag caaataaaac agaattataa
     7621 gctaagggtt gtttatcatg gttcatatac atatcaagat taaaactatc tatgtctaaa
     7681 aggtttttac tggcttgaaa gtttttatct gattcgctat ctatataacc tgcgctaata
     7741 tgagcagcag ctaaactagc ataagctttg cttggattat ggataattat attagcatct
     7801 ttgataaaga ttttattgtt ttttacatta ccttgataag ctaaaccacc tacaaggtga
     7861 gtgattcttt catcaaaggt attattacca tttttatctt ttttaggcaa ggaagtaaaa
     7921 aactctacac tgctacctgc ttttatattt aaactattat ttgtagaatc tccataagtg
     7981 gctatagctc cgattaaata aggagaacca tttaaggcta aatcataagt gttctcaact
     8041 cccatactaa tatgggcatc tttttgaagt atggtttggt tatagcttgc attactataa
     8101 tgagtaaagg tagaactcat taagaaattc atgcgttgat tgcttttgga attactaggg
     8161 tttttatatg agtatcttta ggtttaagat aaaaaaccga actaagttct ccttgttcta
     8221 atataagttt gttataactt gcatcagcat gatcggtttt tgctgtgatt aaaaaaggaa
     8281 gcactctaac tgtttttttt atactacgat cggctgtatt aacaccatgc cttgctttaa
     8341 aagaaagaac ttcatcttct ctcatatcag gagtaagtaa ataatgttaa aatttaaatc
     8401 gtttatattt gtaatatttg gtttatgatt gttaaatatt gttaatatat tgtttagaac
     8461 tcttagcata ataatttata ccttggagtt ttttataagt agaattggtt ttatcataaa
     8521 gttcgttatc attaaaataa tgctttggaa tattgaaatt tcgattgtct gtagtatttg
     8581 cttgagtggc tgcaaaagcg ttgatgctta agaaggtaac aatggaaagt ttaaaacaaa
     8641 atttctctat accccctccc agtgaagtta aaaagcttta ttaaattaag attggacgga
     8701 attttttaat ataaactaaa aagcgatatc aaagaatttc cgttgtataa tctaatgttt
     8761 tttaaatgtg aaatattttt taaggtaaag cgatgaaaat gcgtgtgtat tatgaagata
     8821 ctgatgcggg tggagtggtg tatcatagta attatttaaa attttgcgag agagcaagaa
     8881 gtgaaatttt ttttcaataa aaaagtagat atttttgatg cgtctaaggg acatttttta
     8941 cttacaaaag caaattgcaa tttcttaaaa cctgcaaaac ttggagatat gatagagatt
     9001 aaaacaaaaa ttttagaagt caaaaatgct tctgtggaaa ttttacaaga aatttataaa
     9061 gatgaaattt tgttttttaa aatggaatca actttagctt ttattaaaaa cgaaaaacca
     9121 gctagaatgg atatgcagtt aaaaaagctc tttgaagaat tattttaatt cttcaaagct
     9181 tgcttgctta ccttgcataa gacgcacttt gtaatcaact tgagaatttt tgattttctc
     9241 atcaaataaa ctttcgcttt ttttatttag gaattcggta taaaagtaat caattcctat
     9301 gctagtagca taagcaatcc agttataatc tatactttga ttaaaaattt cattaagata
     9361 gactaagtta tcatcgtggt tattgataga attagcaatg ataaaatttt ctctatctcc
     9421 ttgttgtgtt aaacttaaaa atgttggatt atagttgatt tgagtggata aaagcacata
     9481 aggatgaatg ttataaattc ttagttgaga acttgctaga gctgttttga tcaatggagt
     9541 gttaaaaaat attgaggcat tattaactcc accttgtgat cttaaaagcc tgctaaaatc
     9601 aagcttctcg ccttctatgg tatatattct agcattatta ttttgagcaa gaattcttga
     9661 atttagattg cttgataagg cagagccatc gctaaatatt gcgatattag catttgattt
     9721 gcttaaaagt gtggcaattt gagcatcata gtcaatactt ccaaaaataa tattttgatt
     9781 tgaaatttgt atgttgtttt tatggatagt cggtatgaaa attttcatat ttcctgagta
     9841 atttttcaac tcattagcac cttttaaggt aaatccagct atggcatact gatatccttg
     9901 agcttgtgct gcatcaagcg cggctcgaat tttatcacta tcttctgtgc cggttaaaaa
     9961 aacttttact ttgatttcag ctctttgtct taaaagatag gctatgcttg aatttattat
    10021 agtatttgag tagcttttta tggttttttc tgggataatt atcgcaagtt taacagaagt
    10081 aattttttga acattttttt caaaatcagt aatggaattt aataattttg cataaacatt
    10141 agataaaaat tgatcgtttt ggtctgcaaa ttcacttaaa aaactgagat acaatcttga
    10201 ctctaaaaga tcaaaaagac aatttgtgtt gcattcttga acgcttaatt taggataaaa
    10261 attttcaaca ggttttacat cgactaattt ttgctctttt gcattaagca aaaagcaaga
    10321 taagaaaaat attaaaaata tttttttcat aaaaatcctt taattttttt taaatcttgt
    10381 atgaaatttt tttcataact tggatttttt tctataaaat ctaaatcata acttggcatt
    10441 atgaaaaaat ttttataagc aaaaacttca ccttttaaaa tgtgataatc tttaaatccc
    10501 aagtttttaa atgtgtattc tcctagacaa agcaaaaaag caggttgaat cagttttagt
    10561 tcgttccaga aaaatggtaa gcaagattgt agcgaaaaat catcaaattt tccattacaa
    10621 aaacatttaa ataaataaga aaaataaaaa tcttcatcgc aaagccctaa aatttgataa
    10681 atatagtgtt ttaatttttc accttttttt gaattaagta aaattccgct ttcattttca
    10741 ctcttttgcc caaaaacatc aagaattagc aatttgacat tttttatctt aggttccata
    10801 agactaaatt ttcttgtttt ggaaaattgg cataaggtgc aagatgaaac aagttgtttt
    10861 aattcttgaa aattttgtac ttgttcaaag tggtttgtat gtgtatcaac aaagttaaat
    10921 cccatagctt ttaaataata aagacttctt atcataaatc acacaatttt tctaaatttt
    10981 ctccacttag acgataattt ctccattgtt taagatgttt agcgtttaaa ctttcataaa
    11041 aattaatacc taaaatatta tcatttaagc aaacccagtc gagtcttttt aaattttctt
    11101 ttttgcaaat ttctcctaaa aatttaaaca cagcttttcc ataacctttt ttacgaaaat
    11161 tttctcgtat ataaatatct tcaagataaa ttccaccgct gccccaaaaa gacgaaaaag
    11221 tataaaaata aatcatatag cctatagttt tttcattttc ttttaacaaa aaagcacgag
    11281 caaatttatt ttttagtaaa gaatgttcca gtttttcttt cgtgcattga agaaaatcta
    11341 acatatcttc gtattttgca aattctatga tcatttcttg taaaatatct aaatcttctt
    11401 gtcttaaatc aataatttta aattctgaca tttttaacct tttaaaaata atttcaaaat
    11461 ttatcaaaag aatttaaaaa ttactcttaa tcaaaagcaa tttataagta agattaagat
    11521 aaaatacaag tttattttat aattttttaa ggaaaaatca aatgaaaaga acttatcagc
    11581 cacatggcac tccaagaaaa cgtactcatg gttttcgtgt tcgtatgaaa actaaaaatg
    11641 gtcgcaaggt gatcaatgca agacgcgcta aaggtagaaa aagacttgct gtgtgaaaaa
    11701 ttttgataaa tttagcacaa acgaggaatt ttcatctgta tacaaaatag gtaaaaaatg
    11761 gcattgcgaa ggtgtgatta ttttttatct gaatagttat gaaaaaaaaa tagcagttgt
    11821 tgctagtaaa aaagttggaa aagcagtggt tagaaatcgt tcaaaacgaa ttttaagggc
    11881 tttgtttgct aagtttgaaa gatatcttcg agatggcaaa tatatttttg tagctaaaaa
    11941 tgaaatcact gaactttctt tttctaggtt agaaaaaaat ctaaaatggg gattgaaaaa
    12001 actagaatgt ttcaaatgat atgcctaaaa atactccgtt tttatcagaa attcttaagc
    12061 cctttaaaac ccgctgcttg taggtattat cctagttgtt ctgagtatgc gctttggcag
    12121 tttcaaaaaa agaatttttt tctagctttt ttttctactt tttttagagt tttaagatgc
    12181 aacccttttt ttaaaggggg ttttgattat cctagagttt ctaaaaattt ttatcctata
    12241 aatttatgtt ttaagcctat atttttagca aaaaaacaac tttgtttttt atatatacct
    12301 tataaaaata aaagttttta tcttataaaa atcatcttta aaaggacaaa tcagtgaata
    12361 attcaaataa tatttttcag caaaagcgta tacttttagc tgttgtgatt tcttttttat
    12421 tttttgttgt ttacgattat tttttcattc caaaacaacc tttaaaaata gaacaaaaca
    12481 ttacacaaca aaatcaacaa aacacaagca taaataacac tcctaatata caaaatacca
    12541 ccacaaatac tccaagtgca gctttagttt cacaagatag tgtgatatct aaggttcaaa
    12601 gcaagcattt tgaagcacaa attgactctt ttggtagaat ttctgctttt tatttaaaag
    12661 ataaaaaata ccaaaatgag aaaggagaat ttataaatct tgttagcaag gaaaatagtc
    12721 cttatccttt agaaatgcgt tttagtgatc caagtattaa ctcagaggct tttaaaattc
    12781 cttatgttgc taacgctagc aatctttttg ttgatgaaaa tggaagtcaa gttttaaaac
    12841 tcactcaaaa tctttctgga ttgaaaatcg aaaaagatat tactttttat ccaaaaggaa
    12901 attatgagat agaagttaaa ctcagcaaga atgcaaatta ttttataagt ccaggatatc
    12961 gtccaaatat tgccgtagat agttatacag ttcatggtgc tttggtaatg gataataaag
    13021 aaaccatcga aacttataaa gatggagatg tagaaaagga tgaaagtgct aataatgtcg
    13081 taatgacttc ggcttttgat agatactatg caactttctt ttataatttt gataaacctt
    13141 taaatgtggc aatcagcaag gatgctaatc aaaaccctat agtttttgct tatagtgata
    13201 atgaatttaa agcagggggc tatataggct ctaaagaaca tgtgatttta agaagtatag
    13261 atccacgcct tgaagcagtt gttgaatatg gttggtttac ttttattgct aagcctatgt
    13321 ttgagttttt gaatttcttg catcagtata taggaaattg gggttgggct atcgttgtga
    13381 tgactttaat tgtgcgtatt attttattcc cgctaactta taagtctatg atttctatga
    13441 ataaacttaa agatcttgct cctaaaatga aagatattag agagcgttat aaaggcgatc
    13501 cacaaaaaat gaatatgcac atgatggagc tttataaaaa acatggtgca aatcctatga
    13561 gtggttgttt gcctatactt ttacaaattc ctattttctt tgctatttat cgcgttttgc
    13621 ttaatgctat tgagctaaaa gcagctcctt gggcgttttg gatacatgat ttatcggtaa
    13681 tggatcctta tttcattttg cctattttaa tgggtgtaac gatgttttta caacaactta
    13741 ttacacctat gactatacaa gatcctatgc aagctaagat tatgaaattt ttaccagtga
    13801 tttttacttt tttctttatc actttcccag caggacttac gctttattgg tttgtaaata
    13861 acctttgttc tttggttcaa caatgggtta tcaataaaat atttgctaaa gaacatcaca
    13921 aaaaacaagc ggagcatgaa aaatgaaaat cgaagccatt gatcttcaaa gtgccttaac
    13981 agaagcttca agaagtttag aatgttccgt gatggactta gaatatgaga ttattcagca
    14041 tccaagaaaa ggtttttttg gatttggaag aaaaaaggca attatagagg ctaaagcaaa
    14101 aaaaaggatt ttgaaaaaaa atcctaaaaa agaatttaca agttcaaaaa atcacaaacc
    14161 agaaacacat gagccaaaac aagaaaacaa gattgaaaca aaaaatgaaa aaaataaaag
    14221 ccaaaaagaa aaatatacag taaaaagtga tgaaattttt gatagttttc atcgagaaag
    14281 caaaggagtg cgtaatactc aggatatttt agatgagatt cgcattcagc ttgtaaaact
    14341 tttagaaagc tcccagttta aaatagagct tagtgaactt agaatgtatg atgaagattg
    14401 cgttttgatt cgattggatg gggaagatgc tgctttgatg ataggtaaag aagcacatcg
    14461 ttacaaggct atttcttatc ttttacataa ttggatcaat ttaaaatata atcttttagt
    14521 gcgccttgag atcgctcaat ttttagaaaa tcaaattcaa ggtatgcagc tttatttaca
    14581 aaacgtgatt gaaaaaatta aaattcatgg acgcggacaa accaaacctt tggatggggt
    14641 tttgataaaa atcgctttag agcagttaag agctaaattt ccagataagt atgtaggaat
    14701 taagcaaaat aatgatcaaa gatttgttgt aataaacgac tttttcaaaa aagatgagtg
    14761 atactatagc ggctattgcc acagctcatg gtgtgggttc gatttctatt gtaagattaa
    14821 gcggtgaaag ggctttagaa tttgccttaa agcttagcca caaaaccaaa cttaccccac
    14881 gccatgctac ttttacaaaa ctttttaatc aaaataatga aattatcgat gaagctataa
    14941 tgatatattt taaagcccct tatagtttta caggggaaga tatagtagag tttcaaactc
    15001 atggaggatt tagtgtgagt gaagttttac tcgaagaact tgtgagttta ggagcaagac
    15061 ttgctttagc aggggaattt agcaaaagag cgtgtttaaa tggcaaaatg actcctttaa
    15121 aagctttaaa tatacaagat ctcatacttt caaaatctgc acttgcagct aaaattatag
    15181 cacgcaacat gcaaggaaac ttaggagaac ttttagaaaa aattcgcaca gatttggtta
    15241 aaactttagc ttttgtagaa actagtattg attatgctga tgatgattta ccttctgatt
    15301 tattagaaca aatttctact atgtgtgaag aaaattctaa aattttaaaa gaaatttata
    15361 cgctttctca aagcaaaaaa ggactcatag aaggttttaa aatcgctatt gtaggtaagc
    15421 caaatgtagg caaatcttcg cttttaaatg ccttgctttc ttatgaaaga gctattgttt
    15481 cagatatagc aggcaccact cgtgatacta tagaagagag ctttaaatta ggaacgcatt
    15541 tattacgcat tatagataca gcgggtatta gggaaagtaa agatgttata gaacaaatcg
    15601 gcgtagcttt aagtaaaaaa agtttagaag atgcagatat tattttggca gtctttgatg
    15661 cttcaagagt gcaagataaa gaagatgaga aaatttttga cttattagca aatactgata
    15721 aaaaaatctt ttggatttta aataaaagtg atttagaaaa tgttttcaaa aatactcaaa
    15781 ataaaaattt tatcaagctt agtgctcaaa aagacatcac tttattaaaa gaagaattgc
    15841 aaaattattt taattctttt gatagcgaag gtattatggt aagttcttta gatcttatta
    15901 atgcttgtaa aatttcaagt gaagcgattt ttagagctaa agggctttta gaggaaagtt
    15961 ctttagaact ttttgctttt gagcttaatt tagcgattaa tgaacttgca agatttacca
    16021 aagattttca aagagatgaa attttagacg aaatgtttgg taatttttgt ttaggaaaat
    16081 gaaaggataa aaatggacaa agaaaccata aaagcacata aaatcagtga tgaagaatat
    16141 gcacaaattt tagaaatttt aggacgcgag ccaaatttat tagaacttgg ggttatttct
    16201 gcgatgtgga gcgagcattg ctcttataaa tccagtaaaa aatatcttaa tggttttcca
    16261 actaaagcac cttgggtgat tcaaggccca ggagaaaacg caggggttat tgatattggg
    16321 caaggtatgg cagcagtttt taaggtagaa agtcacaatc atcctagctt tatcgagcct
    16381 tttgcaggtg cggctacggg agtaggggga attttgcgtg atgtttttac tatgggtgca
    16441 agagtggttg cagggctaaa ttctttaaaa tttggcaata ttcatgatga aaaatgcggc
    16501 aaacatcaaa aataccttgt taaaggtgtg gtaaatggaa tttctcatta tggaaattgc
    16561 atgggtgtgc caactatagg tggagaatgt gcttttgatg agtgttttaa tggaaatatc
    16621 ttagttaatg cctttgcttt aggggtttgt aaaagtgaag atatctttta tgctaaggct
    16681 gaaggtgtag gaaatcctgt gatttatgtg ggttcaaaaa cagggcgtga tggacttggt
    16741 ggagcggtta tggcaagtga tagcttcaat gaagaaagca aatctttgcg tcctacagtg
    16801 caaattggcg atcctttcag tgaaaaactt cttatggaag cttgtttaga gctttttaaa
    16861 actgattata ttgtgggtat tcaagatatg ggtgctgcag ggcttacttc aagttctttt
    16921 gaaatggcag gaagaagtgg cagtggcatg aaactttact tagataaaac tcctatacgt
    16981 gaaagcggta tgactcctta tgagttaatg cttagcgagt ctcaagaaag aatgcttatt
    17041 tgtgcgaaaa aaggctatga agataaggtt atagaaattt tcaaaaaatg ggatttagat
    17101 gctgtggtta taggtgaagt taccaataca ggaaaaatgg agcttttttg gcatgatgag
    17161 cttgtagggc ttattcctat cgagcctcta agtgaaaaag cgccgatttt aagtcgtcct
    17221 ataagtgagc caaaatattt aagtgaaatt aaagattata aatttgagct aaaattaagc
    17281 attcaagagc tttttataca aatgcttcaa aatgaaaata ttaacaacaa agcttttatt
    17341 tatgatcaat ttgactcaag tgtgcaaacc aatactataa aagctgatgg aagattaggt
    17401 gctagtgtta ttcgtatcaa agaaaatggt gcaagtgtgg ctatggctat agaatgtaac
    17461 tcacgcttaa attatgtaaa tcctaaaata ggagcagctt tagcagtagc ttcagcagga
    17521 agaaaagttg cttgcacggg ggctaagcct ttggcaataa gtgattgttt aaattatgga
    17581 aatccgcaaa atcctgaagt gatgtggcaa tttgcacaag gttgcgaagg cattaaagaa
    17641 gcttgtaaag agttaaatac cccagtagta agcggcaatg tttcacttta taatgaaact
    17701 gaaggcgtaa gtatttatcc aagtcctact atagtaagcg taggggtttt agaagatgca
    17761 aataaaacct taaaagctaa ttttgaaaaa gaaaatttaa gtgtttatct tttgggtgaa
    17821 agtttagggg aatttggtgg atctatggta atgaaaatcc aagataaaaa agtatcagga
    17881 agtcttaaag agcttgatta taaagctgaa attgcacttt gggatttgct ttataaagcc
    17941 aatcaaaatt ctttacttga gtgtgccaat agcgtaggaa tagggggtat tgctatgact
    18001 ttggcaaaaa tgtttgctat ttctagtgtg ggtgtaaatt taacaagtgg ttttgatgat
    18061 gaaaaaatga tttttgatga gagtgcaagt cgtgctatag tagggcttag caaagaaaat
    18121 gaagaagctt ttttaaattt agccaaagaa tttggagtaa aagcttataa attaggtgtg
    18181 agtacaagcc aaaaacattt taaacttgat aacattgagt taagcaaggc tgaacttgac
    18241 aagctttatt ttgaaagttt taaagagcaa atccaatgac tttagtttta attatactcg
    18301 ttattttggt gttttactgg tattataaaa cttgggggaa acaggatttt ttaaactcag
    18361 ctacaagagg agccaaaggc tttgctaagg gttttgctcg tggggttatg gaagaaagaa
    18421 tggatgagtt taaaaggcgt atgaattact atgttatcgc acttttggca aaaattgcaa
    18481 aaagtgatgg tagggtaagt gaaaatgaag ctgaaatgat caaagatctt ttagatgcaa
    18541 atgccaaaga tgaaaaagaa agagcttttt taaaagcaag ttttaatgaa cataaagaaa
    18601 atttaagtga tgctttttat gtggcaaaag attttttaaa agaagtgcct ttgcctaaaa
    18661 atgagcgttt taatgtcttg cgtgtgcttg tttttatggc tttaatcgat gcagatttta
    18721 atgctaaaaa gcgtgaaatt ttagagcaaa tcgctaaagc ctttgatata gcaaaaagcg
    18781 aattagacgc ttttatagca agtctttcaa atttaaaaag tactaaaaaa gaattaagcc
    18841 ttgatgaagc ttttgctatt ttagaacttt caaataatgc agatttaaat gcagtaaaaa
    18901 aacaataccg caatttagca aaaaaatatc atcctgatat tttaaatgca aacaatgtta
    18961 gtgaagaaga gcttaaaatc ggtgtagaga aatttcaaaa aatcaacgaa gcttacgaaa
    19021 aagttaaaaa acatttagaa aggtaaaaat gagagcatta cttagtgtga gtgataaaga
    19081 aggcatagta gaatttggca aagagcttga aaatttagac tttgagattc tttcaacagg
    19141 cgggactttt aagcttttaa aagaaaatgg aataaaagtt atagaagtga gtgattttac
    19201 aaagagtcct gagctttttg aagggcgtgt gaagactttg catcctaaga ttcacggtgg
    19261 gattttacac aaaagaagcg atgaaaatca tatcaaacaa gcaaaagaaa atgaaatttt
    19321 aggcattgat ctagtttgtg taaatttata tccttttaaa aaaaccacta ttatgagtga
    19381 tgattttgat gaaattatag aaaatatcga tataggtggg cctgcgatga taagaagtgc
    19441 agcaaagaac tataaagatg tgatggtact ttgcgatccg cttgattatg aaaaagtgat
    19501 tgagacttta aaaaaaggtc aaaatgatga gaattttcgt ttaaatttga tgataaaagc
    19561 ttatgagcat acggcaaatt atgatgctta tattgcaaat tatatgaatg aacgctttaa
    19621 cggaggtttt ggagtgagta aatttatagt agggcaaaaa gtatttgata caaaatatgg
    19681 agaaaattca catcaaaaag gggctttata tgagtttgat gcctttttta gtgcaaattt
    19741 caaagccctt aaaggcgaag caagttttaa taatctaacc gatattaacg cagctttaaa
    19801 tttagctagt agtttcgata aagctccagc tattgctata gtaaaacatg gaaatccttg
    19861 cggttttgct ataaaagaaa atttagtaca aagctatata catgctttaa aatgcgatag
    19921 cgttagtgct tatggaggag tggttgcaat caatggaact cttgatgagg ctttagcaaa
    19981 taaaatcaat gaaatttatg tagaagtaat catcgcagcc aatgtagatg aaaaagcttt
    20041 agccgtgttt gaaggtaaaa aacgcattaa aattttcact caagaaagtc catttttaat
    20101 ccgcggtttt gataaatatg attttaaaca tattgatggg ggttttgtat atcaaaacag
    20161 cgatgaagtg ggcgaagatg agcttaaaaa tgcaaagctt atgagtcaaa gagaggcaag
    20221 taaggaagaa ttaaaagatc ttgaaatcgc tatgaaaata gcagcgttta ccaaatcaaa
    20281 caatgttgtt tatgtaaaaa atggcgctat ggtggctata ggtatgggta tgacaagtag
    20341 aatcgatgca gcaaaggcag caatcgctaa agctaaagaa atgggacttg atttgcaagg
    20401 ttgcgtttta gcaagtgaag ccttttttcc ttttagagat agcatagatg aagcaagtaa
    20461 agtaggggtt aaagctatag tagaaccagg cggaagtata agagatgatg aagtggtaaa
    20521 ggcggctgat gagtatggta tggcgcttta ttttacagga gtaagacatt tcttacatta
    20581 agtttaatgg aatgttatgt tttttacaca taattcaata aaaattaaat aaattatgtg
    20641 taaaatattt ccgaaaaatt ttatttttag gaaactatga tgtttaaaac tataggattt
    20701 aaggtttctg ctgcaatttt tgtggtgttg cttataagtt tcattgtaat gcaagtgatt
    20761 ttaaatttgg attttaaaaa tactgccaat aaaatgagca gggcaaattt aaataccgta
    20821 agtacttctg tttttcaaac aatgagaatg gctatgaatt taggagatcc tgaaaaaatt
    20881 aaagaagcca ttgaagatgt aaaaagtata gagggtatta gtgatattaa aatttatcct
    20941 tcaaaagata ctatagatct ttttgagatg aaagcccctc aaatttcaaa tgataagcgt
    21001 attatagaac aattttcaaa tcctaaaatt caagctttag aagaaaatat aaatggtgtt
    21061 gtgtatttaa gattgatacg ccctttgatt gcagatgaaa gttgtgttac ttgtcatgaa
    21121 atgctaatgc aggaagtgtg attggggtta tggatatatc acattcttta gaaggtgttt
    21181 aaaaagatat aagcaaaacc ggtcaatctt atattataat atttactatt gctttgattt
    21241 ttaccctttg tggtggttct tttaatgctt aaagttgttg ttggaaagcc cgttttagag
    21301 cttttaaatc atgctaaaga attagctcaa ggaagcggca attttaaaag ctcgtatttc
    21361 agttaaaggt caagatgaaa ttgctttagc ttgtggatat atcaatcaat ttatcgaaaa
    21421 aactcacaag acagttagca gtgcaagtca taatttaaaa aatgtagaaa aacaaagcaa
    21481 tcttttaaat tcaaatgcta ttttttaagt gatatcagtt cacaaagtca taagcaaata
    21541 gatcaaagtt ttaaacttgg tgcaaatgtt ggcaatgaac ttagagaact tgctagtttg
    21601 tcaaataagg caaatagtgc caatgaaaaa tcctttttat tattagagca aatgcttaaa
    21661 tctttgttta atgttgctaa taaagtatca atagtatccc aaaatgaaaa tgaattggct
    21721 aaaaaagttg aaaacatggt caatcaagca ggtaatatac aaaaagcaac tcaaatgatg
    21781 gataagatcg cagataaaac aaaattacca tccctaaatg ctggcataga agtagctagg
    21841 gctggtgcat ttggactagg tttttctgta attgctgagg atgataggca gttggctcag
    21901 aacagtgaag aatttttggg aaatgtagct caaattacaa aagagctttt gcaaagtatt
    21961 aatgaggtta acgcagaatt aaagaaaaat actcaaagtt taaatgatga caccgcttta
    22021 ttggttgatg atactaatga ggttaaatta tgtaacgaag atgctagggc tttggtaact
    22081 caatgtactg aaaaaataaa aatttcccaa gagaatatat aaaatttact ttctcgtatg
    22141 caagaaaatg ttgaagtaag tgaaaagaat gaagaaattt ctaaaattct acttcaagtt
    22201 gtagatgagt taaaaatagt gtgtcataat ctcgaaagcg aacttaacca attttaaatt
    22261 taaaggaata aaatgaaaaa aacgcttcaa attgctttag ctgcaacttt ttttgcaggt
    22321 tgtgctagta cttctgttac ttcatctact tctaaaggta ataatgaact tgtacaaaat
    22381 cagcttttca aaatagaaaa aattatagtt aatggtaaaa cttttgatcc aaaaaacgca
    22441 gaggaaagtc caaatattag ttttgaaaat aataaatttt atggttattc agggtgtaat
    22501 cgtttttttg gttcttatca aactaaggcg gatactttgc aaatcgaagg tgatcgcgta
    22561 gcttcaactc aaatgctttg tcatccaatg gatgtaatgg attttgaaaa ttctttcctt
    22621 tcaaatttca aaggaatttt taaaatttca aatgaaaatg gaaaacttgt tttaagtaat
    22681 gatgaaatga agatcttttt taaataatat cctaaagcct cgaaatatcg aggtaatctt
    22741 cttaaatttg acaaaagtct aaaaaatgat acaattataa ttttattatc aaaaaaggta
    22801 gttaaatgat aaaatcaatt cctgaatgga gtgagcaaga atacctcatg ctttctttac
    22861 cccatgaaaa aagcgattgg aatccctatt tagaggaaat tttgcaaagt tataaagaat
    22921 ttgtaaaagc agtgagtgaa tttcaaaaag ttttacttat agctcctaaa cagagtgatt
    22981 ttgaaaattt taaagatata aaaaatgtag agtattttaa atgtgatacc aatgatactt
    23041 ggatacgtga ttttggagct atagatataa tagaaaatgg tcgtttaaag gctcttgatt
    23101 ttacttttaa tgcttgggga aataaatttc aaagtgagct tgataatgct gtaaattcta
    23161 agctttttaa agaaaaattt aaagaggaac ttaaaaaggt tgattttatt ttagaaggag
    23221 gaagtattga ctttaatgga gagggtgtga tgcttacaag ctctcattgt cttttaaatg
    23281 aaaatagaaa ttctcatcta aacaaaaccc aaattgatat aaaattaaaa gaaatttttg
    23341 gtttaaaaca aattatttgg ctagaaaatg gtttcataaa aggtgatgat acggatcatc
    23401 atatcgatac cttagcaaga tttatagata aaaataccat agcacattgt atttgtgaag
    23461 atgaagagga tgagcattat ttgcctttgc aaaaaatgaa agaagagctt aaaaaaacag
    23521 gctttgattt agtagaactt cctataccta agcctttata ctatgaagga agaagattgg
    23581 gtgcaactta tgcgaatttt gtttttataa ataatgcttt aattgtgcct ttttataagg
    23641 ataaaaatga tgaaatcata gctaaaagac tttctaaagc tttacctagt cataaaatta
    23701 taggagtaga tgcaagagtg tttttacgac aaaacggttc tttgcattgt tcttgtcaaa
    23761 atcgtttcaa aggtttaaga tgagtttgca aaaaaaagca actcttgtag caagtttatg
    23821 tgccattgtt ttagccttgg ttaaatttat agtaggctta acaagtggtt ctgttacagt
    23881 actttcaagt gcgattgatt ctttaatgga ttttgctatt tctgctttta attttttggc
    23941 tcttaaaaaa agctcacaaa aggcgaatga aaattataat tttggttttt ctaaaattga
    24001 agctttaatg ggtttgttag aaggtgtttt tatagttggc gtggggattt ttatttttta
    24061 tgagagtatt ttaaagattt attataaaga agaaattaaa gatttaaatt caagcatcta
    24121 tgtgatgatt tttgctttaa ttatgacttt ttttcttgta ctttttttaa attatgtagc
    24181 taaaaaaacc aaaagtttaa ttatagaaag tgatgctttg cattacaaaa cagattgctt
    24241 aaccaatgct tgtactttag gggctttggt tttgatttat tttacaaatt tacatattat
    24301 tgatgctatt tttgggatag tgatcagtct ttatacggca ttttctgctt ttaaaatcat
    24361 taaaaaagct ttagcttttt taatggatga ggctttacct aaggaacaag tggataaaat
    24421 ttgtactttg atttctaata atcctgaaat aatttcctat catgaattaa agacgcgtaa
    24481 aactccaagt tgtaattatt taagcgtgca tttggttttt tgccctataa tttcgctttt
    24541 aaatgcgcat aaaatttcag atgaaataga agaaggtgtg cgtaagatgt ttgaaaatga
    24601 aaaatgggat atacaaattc atttagatcc ttatgatgat gcagaacaag aaaggcaaag
    24661 acaatgaaaa tcgctttaat acaacaaaaa tttcatttaa ataaagaaca aactataaaa
    24721 aaaacttgcg aatttataga agaagcctct aaacaaggag ctgagcttgt ttgcttagga
    24781 gaacttcatc aaagtgagta tttttgtcaa agtgaaaatg tggatttttt tgactatgct
    24841 aatgattatg aaaaagatgt gaaattttgg gcaaatatag ctagaaaaaa tcaaatagtg
    24901 cttattgctt cattgtttga aaaacgaagt gccggacttt atcataatac tgcagtggtt
    24961 tttgaaaaag atggttctat agcaggcaaa tatcgcaaaa tgcacatacc cgatgatcct
    25021 tgtttttatg aaaaatttta ttttactcct ggagatttgg gttttgaacc tataaataca
    25081 agtttaggta agcttggagt gcttatttgt tgggatcagt ggtatcctga agcagcaaga
    25141 attatggctt taaaaggagc tgagattctt atttatccca cggcaattgg ttggtttgat
    25201 aaggataaag atgaagaaaa acaaagacag ctcaatgctt ggcttggcgt acaaaaagga
    25261 catgctatag ctaatggttt atatgtagta gctatcaata gagtaggttt tgaaaaagat
    25321 gtaagcggga tagaagaggg cattagattt tggggaaatt cttttgtttt tggtcctcaa
    25381 ggtgaagaac tttgtctttt agattctcaa aacgaatgtg taaaaatcat agaaatagat
    25441 aaaaaaagaa gtgaaaatgt gcgtcgttgg tggccttttt tgcgagatag acgcatagaa
    25501 tattttgcag atttaactaa aagatttatt gattaaatca ataaatctta tttgttttgt
    25561 atattttcaa gatagctttt tatttgctct ttttcttgtt catttaaatt tataaaactt
    25621 atttctttaa gtcttgataa aagcaaatta tcttctaaaa tttcattttt tcctatttct
    25681 aaagaagtga tgacgctaga acttatgaga agtctttggg ttgcatcttt tcttaagccc
    25741 catatattat gtatggcaat attattatct gtaatttgtc ctgcataaag cataatatgt
    25801 ccaggtaaat aaagtaagct taaataagct tttccaaagc ggtttaaaaa atcttttttt
    25861 tgagaattgc taagagtgct tatatcaaaa tgattaaaag aatttttttg tgcagctgaa
    25921 tttcttggta gataaagtcc aaaagctgaa aagatatcac gagttagtaa agaacaatct
    25981 ctttcaaaat tataaccgcc ccagccataa ggcaaattta aaacttgtga aagttgattt
    26041 tttaaatttt tatcattgaa ttgtaaagga aatttagata catctttttt agaaatttta
    26101 tattttttag aacctatttt tccataaaaa tagtttttat cttctttgta gtaaggatag
    26161 atagcaccaa ttctactttc aaagaaaaat ttaccatcct cgctatagat agcaaatttt
    26221 tcttttagtg gtgtgataaa gttgagattt tcatagattt tcgctctatc gtttgagaaa
    26281 aattccaaat ttttactttc aacaaatcca aatccagctt cacctaaaac aaaagcataa
    26341 cgcttatctt tactaaaatg tgaaattaag acaggggatc cagtatttaa aatgccatcg
    26401 cttgcatagt caaaaggaat tccttcattt tcaaaaaaag gattttttaa gatagctctt
    26461 tgggttggaa gatttttaat gattgtattt tggataatca aagctttttg attaagtttg
    26521 ccaaattctt ggatatttgc gttatttata gcatttttaa accatgaaag cggaataatt
    26581 tgtttattga aaaaataata agtatttttt gaatttaaat ataaaggaaa ggaccaaaaa
    26641 atattttgtc ctttgtagtt tttaaatgaa tcatgccaag ggttaaagaa atatttttta
    26701 tatcgttttg catcaaaatt aatattgtaa gtaaattgtg gtaaaatgct tacattttgt
    26761 tcgtattcaa gttttgcata atgtttattt tcattttttt gttctaaatt ttcatgatga
    26821 agcgaagtta aattttttgt tgaacaagct gttaaaaata gcactataaa agtaaaatat
    26881 aaacaagatt tcataatcaa ccttttagaa aaaatagtta taattaaagc taaggaaata
    26941 taatgcttga taaactagaa aaaattttag cttatgataa tgttttttta agtggtggcg
    27001 ctggagttgg taaaagcttt ttgacaaatg agcttatcaa atcttataga aaacaaaaaa
    27061 aattagccat agctcttggt tctagcgctc tatcggcatt taatataggc ggtgttactt
    27121 tacacagctt tttttgttta gggtattgtg atgatatgat gaaattaagt gcattggatc
    27181 acaatcaaaa acaaaaagaa aaattaacaa aacttaaaga gcttttaaaa acgattgagc
    27241 ttattattat cgatgaaatt tccatggtta gcgcaaatgt ttttgaaatg ataggcttta
    27301 gacttaaaaa ttctcaattt aatggaaaaa ttttagttgt tggagatttt tttcaactgc
    27361 ctccagtaat taaagaaaaa aaagaaactt tatttaacca ttcttattat gctttttctt
    27421 catttttttg gcaagattta aattttaaga atattaaact ttctcaacct aaaagaacgc
    27481 aaaatatgga attttataac catttatctt tgattagaca aggtttttta gatgaaaaaa
    27541 ttttaagctt ttttgaatct ttgcgaattg attataaaga attagaaaat ttagaagatg
    27601 attatacttt actttgtggt atcaataaaa aagtaaacaa tatcaatcaa gaaaaattaa
    27661 gcaaacttga gaccccgctt gtatgcttta aggctcaggt taaaaaagaa gataagagaa
    27721 taaaagatga agagcttgat tcttggatta gaagcttaaa tatattggaa gaattaaata
    27781 ttaaaatagg cgctcgtatt attttttgcg taaataattg ggataagaat tattataatg
    27841 gagagcaagg tattatagaa gatattcttt atgaagagga gaaaatttat attagcatta
    27901 ttaaaaataa tgggatgaaa attttacttg aaccttatac ttttttcatg gaagaacttg
    27961 agcaatcagg taaagatttt gttgttaata ttctcgcaag tgttacacag tttcctatta
    28021 aattagctta tgctattact atacacaaat cacaaggtat gagtattgaa aaattagtgt
    28081 gtgatattga tcatattttt gaaaatggac agctttatgt cgctctttct cgcgctacaa
    28141 acccaaatac tttaaaaatt tattctacaa aaaagataaa ttttggattt tattttgcta
    28201 atattttaaa aatagattct aatgtgattg aattttataa aaaacataat tttttagatc
    28261 tcgaaataca agaacaaatc atttaaaggc attaaatgaa aaaaatattt ttaagtgttt
    28321 ttttggtttt gagtttaaat gctcaaaatc ttgaaataga taaaataaga acagatttgt
    28381 attctaaaag tggagcaaat gttcttaaaa aagttgaaat ttctttggaa tttgatggga
    28441 ataatttaaa agaaaatgaa aataagttaa ttgatgctgt aaatacagta atttcagggt
    28501 ttttttatga agatattttt acagaaattg ga
//
LOCUS       DARGED010000007        24827 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.007, whole genome shotgun sequence.
ACCESSION   DARGED010000007 DARGED010000000
VERSION     DARGED010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.007"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            144..506
                     /locus_tag="SFZ84_000256"
     CDS             144..506
                     /locus_tag="SFZ84_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8202423.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDIPKGAKVEIEIIAQKG"
     gene            510..902
                     /locus_tag="SFZ84_000257"
                     /pseudo
     CDS             510..902
                     /locus_tag="SFZ84_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
     gene            974..1348
                     /locus_tag="SFZ84_000258"
     CDS             974..1348
                     /locus_tag="SFZ84_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HEG8202424.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLIEGMKQAQGITEQLKAENALEW
                     TGCLNNIRACAREIVEKEIIFA"
     gene            1715..3634
                     /gene="tet(O)"
                     /locus_tag="SFZ84_000259"
     CDS             1715..3634
                     /gene="tet(O)"
                     /locus_tag="SFZ84_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEG8202425.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCIPSNGEIVPADHACPGEIVILADDTLKLNDILGNEKLLP
                     HKTRIDNPMPLLRTTVEPQKPEQREALLNALAEIADTDPLLHFDIDTVTHEIMLSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            3686..3859
                     /locus_tag="SFZ84_000260"
     CDS             3686..3859
                     /locus_tag="SFZ84_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEG8202426.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            4713..5756
                     /gene="dcuC"
                     /locus_tag="SFZ84_000261"
                     /pseudo
     CDS             4713..5756
                     /gene="dcuC"
                     /locus_tag="SFZ84_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            5768..6931
                     /locus_tag="SFZ84_000262"
     CDS             5768..6931
                     /locus_tag="SFZ84_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEG8202427.1"
                     /translation="MNSKTKLIHCGRGDQNVEVRSVNPTLMRASTILFKDHATWQKYR
                     GLRKTDRVLSYGARGTTTNFELEKLICTLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLDKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     IIDLPKLCKIAHAHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGI
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQSR
                     KEIKTIFYPKLKSHPNHKIFMRDHKGANGMITIEFAEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDLSARGPFVRFHIGLEDTKDLIADLTQAFDSIKE"
     gene            6941..8308
                     /locus_tag="SFZ84_000263"
     CDS             6941..8308
                     /locus_tag="SFZ84_000263"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8202428.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAIMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQSARDRFIELGFVLGNINATFNKIAHEILILSHNKIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAYEIVY
                     ENAMLGIEKQKTFKEVLLTDKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            8317..9656
                     /locus_tag="SFZ84_000264"
                     /pseudo
     CDS             8317..9656
                     /locus_tag="SFZ84_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            9738..9962
                     /locus_tag="SFZ84_000265"
     CDS             9738..9962
                     /locus_tag="SFZ84_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG8202429.1"
                     /translation="MTLDNLKDGQKAIIVNLSAQKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDASCVILRSDEAKTIEVNLI"
     gene            9959..11650
                     /gene="feoB"
                     /locus_tag="SFZ84_000266"
                     /pseudo
     CDS             9959..11650
                     /gene="feoB"
                     /locus_tag="SFZ84_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869573.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
     gene            complement(11798..13291)
                     /locus_tag="SFZ84_000267"
     CDS             complement(11798..13291)
                     /locus_tag="SFZ84_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8202430.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(13295..14119)
                     /gene="fabI"
                     /locus_tag="SFZ84_000268"
     CDS             complement(13295..14119)
                     /gene="fabI"
                     /locus_tag="SFZ84_000268"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG8202431.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(14123..14794)
                     /locus_tag="SFZ84_000269"
     CDS             complement(14123..14794)
                     /locus_tag="SFZ84_000269"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG8202432.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTIGVKCDDIIVFPPSVAFL
                     EKENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGV
                     SAQNTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(14791..15993)
                     /locus_tag="SFZ84_000270"
     CDS             complement(14791..15993)
                     /locus_tag="SFZ84_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG8202433.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKVGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKCAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(15996..16994)
                     /gene="gap"
                     /locus_tag="SFZ84_000271"
     CDS             complement(15996..16994)
                     /gene="gap"
                     /locus_tag="SFZ84_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG8202434.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            17054..17599
                     /gene="nadD"
                     /locus_tag="SFZ84_000272"
     CDS             17054..17599
                     /gene="nadD"
                     /locus_tag="SFZ84_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG8202435.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            17627..17953
                     /gene="rsfS"
                     /locus_tag="SFZ84_000273"
     CDS             17627..17953
                     /gene="rsfS"
                     /locus_tag="SFZ84_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG8202436.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLES
                     LKKIKA"
     gene            complement(18248..19612)
                     /locus_tag="SFZ84_000274"
     CDS             complement(18248..19612)
                     /locus_tag="SFZ84_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEG8202437.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLAKGCKNVS
                     VGYDARYSADELYRYLVSGLNKAGIQVYNIGLVPTPLGYFSLYEGMKFDANIMITGSH
                     NPKDYNGFKITIGKESFFGAELKEFSKEVYKHLEDEIEENLEAQKYDILSLYVKFMCE
                     QFNFLKDFNYKFAIDCSNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLEAMISALPKLYTTPEIKIPVSEEEKFKLVDEFKKAIEKGAL
                     EGVKSLCEIDGARIDFGYGWALLRASNTSPYLITRFEASSLEQAKELETKVFKLFNDI
                     KESV"
     gene            19724..20260
                     /gene="fliL"
                     /locus_tag="SFZ84_000275"
     CDS             19724..20260
                     /gene="fliL"
                     /locus_tag="SFZ84_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG8202438.1"
                     /translation="MDEELENNEEKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKAAPKEEVKADKAKVTAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNTELLKPELDKKVAVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            20260..20607
                     /locus_tag="SFZ84_000276"
     CDS             20260..20607
                     /locus_tag="SFZ84_000276"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG8202439.1"
                     /translation="MRIGCDIVAISRIDTIYQKHGNAFLDKFLNQNEQKLIKSSSTLA
                     GFWAAKEAASKALGVGISKECGFLDIEISKDSKNAPHLKLASHVLEKFKINSTSLSIS
                     HDNGFAIAVVALD"
     gene            complement(20610..21032)
                     /locus_tag="SFZ84_000277"
     CDS             complement(20610..21032)
                     /locus_tag="SFZ84_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202440.1"
                     /translation="MKRVKARIRANFRNRIKRNLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGKR"
     gene            complement(21029..22399)
                     /locus_tag="SFZ84_000278"
     CDS             complement(21029..22399)
                     /locus_tag="SFZ84_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG8202441.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVKEFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRISKVFNLMSEAVSDMMKRFEKYPNASIIEVDEAMTFITADVIFRTIMS
                     SKLDEEQGKKILDAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQALS
                     DIIKPRYDAVSSGKAENFEDILGSLLLVVDAQTNQRFSFEEILDQVAMLFLAGHETTA
                     SSLTWTLYLLSLYPDEQEKAYKEIIQVLQGENIQISHLKQFRYLTHIFKESLRLYPPV
                     GFFAREAKKDTKVRDKMIKKGSGVVIAPWLIHRHEGFWANPHEFKPSRFEGEYKKDAY
                     LPFGVGERICIGQGFAMQEAILILANILKKYKLELEEGFVPDVVGRLTIRSANGMRIK
                     FSKREP"
     gene            complement(22396..23517)
                     /locus_tag="SFZ84_000279"
     CDS             complement(22396..23517)
                     /locus_tag="SFZ84_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG8202442.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFSIKVDLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(23590..24774)
                     /gene="kpsS"
                     /locus_tag="SFZ84_000280"
     CDS             complement(23590..24774)
                     /gene="kpsS"
                     /locus_tag="SFZ84_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG8202443.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
BASE COUNT         8457 a         4235 c         3943 g         8192 t
ORIGIN      
        1 atataatatt aaattctact ctttatactt taaaacattt cttaaaaata aaattttatt
       61 attatgataa taaactattg acaaattatt attgtagtga taaaatgcat tctgcttaat
      121 ctatatttaa caaaggagaa ttcatgtcaa actatccaaa ggccattggt ccatactcag
      181 cttacagaga agcaaatgga cttttattta tatcaggaca acttcctatc aaccctgatt
      241 caggcgaaat agaaagccat gatatcaaag aacaaaccaa acaatctttg aaaaatatcg
      301 gtgctatctt agaagaaaat ggtatcagtt atgataaagt gattaaaacc acttgctttt
      361 tagctgatat taatgatttt gtagcattta atgaaattta tgctgaattt tttaaagctc
      421 cttatccagc aagaagtgct tttgcagtaa aagatatacc aaaaggagct aaagtagaga
      481 tagagatcat cgctcaaaaa ggataaaaca tgctaggtat tgttttttct ttatttagtg
      541 tttttttact tgtttttatg ctttataaaa aaatcaatgc tcatatggct ttgcttttaa
      601 gtggtttact tttactttcc ttagctgcta tttttggact ttctccacac attgtcgcta
      661 aaggttcttt aaatttaggt ttttttgata tttttcaagt tttcaatcaa accatgtcaa
      721 atacattagc agggcttgga cttacactta tgactatagc aggtttttct gcttatatgg
      781 atcatgtagg ggcttcttat gcacttttta aagtttttga aaaaccttta aaagccgtaa
      841 aatctcctta tgttttactc atagttgctt attttatcgt gcaattttta gttcttttca
      901 tccgccggaa cggacaatgt aggacggatt ttgcggacat tcaaaataaa aaagaatgtg
      961 gaggtaacag acaatggcaa aatcattatt tgaggaactg ggcggcaaat acgaaaggca
     1021 aggggattat ttgataccgt gcttaactgt acccgccgaa gaagaacagg caataggcat
     1081 ctgggggcaa cggcatttag attatctaaa acagtaccgt aaagttacat acaccaatct
     1141 tcttacaagc ggcaggctaa acgcctacct tgccgacatc aacagacagg cacaggaacg
     1201 ctttgaaagg ctcatagagg gtatgaaaca ggcacagggc ataacggaac agctaaaggc
     1261 agaaaacgcc ttagaatgga caggatgcct caataacata agggcttgtg cgagggagat
     1321 tgtggaaaag gaaattattt ttgcataaac agatgattag tggcaggggg aaatcctgcc
     1381 gctttttctg ctttagtttg tcagcttgac aaataaaggg ttaaggaata taattagatt
     1441 cagtattata caaggagtta ataaatatgc ggcaaggtat tcttaaataa actgtcaatt
     1501 tgatagtggg aacaaaaagt agcagtcccg tttcactttt aatatggggc ttagtttttt
     1561 gtacccagtt taagaatact tttatcatgt gattttatat gcccgaaaac atataagtgt
     1621 tttggggcta ttggagttat ttacccagtg ataggagtat ttatcactgg gtatttttat
     1681 gccctttttt gggtgttgat aggaggaaaa tcacatgaaa ataattaact taggcattct
     1741 ggctcacgtt gacgcaggaa agacaacatt aacggaaagt ttattgtata ccagtggtgc
     1801 aattgcagaa ctagggagcg tagatgaagg cacaacaagg acagatacaa tgaatttgga
     1861 gcgtcaaagg ggaatcacta tccagacagc agtgacatct tttcagtggg aggatgtaaa
     1921 agtcaacatt atagatacgc caggccatat ggattttttg gcggaagtat accgttcttt
     1981 atccgtatta gacggagcag tattattagt ttctgcaaag gatggcatac aggcacagac
     2041 ccgtatactg tttcatgcac tacagataat gaagattccg acaatttttt tcatcaataa
     2101 aattgaccaa gaggggattg atttgccaat ggtatatcgg gaaatgaaag caaagctttc
     2161 ttcggaaatt atagtgaagc aaaaggttgg gcagcatccc catataaatg taacggacaa
     2221 tgacgatatg gaacagtggg atgcggtaat tatgggaaac gatgaactat tagagaaata
     2281 tatgtcaggg aaaccgttta aaatgtcaga actggaacag gaagaaaaca ggagattcca
     2341 aaacggaacg ttatttcccg tttatcacgg aagcgctaaa aacaatctgg ggattcggca
     2401 gcttatagaa gtaattgcca gtaaatttta ttcatcaacg cctgaaggtc aatctgaact
     2461 atgcgggcag gtttttaaga ttgaatattc agagaaaagg cggcgttttg tttatgtgcg
     2521 tatatatagc ggaacattgc atttgaggga tgttattaga atatctgaaa aagagaaaat
     2581 aaaaatcaca gagatgtgta ttccgtcaaa tggtgaaatc gtcccggctg accatgcctg
     2641 tccgggagaa attgttattt tagctgatga tactttgaaa ctgaacgata tcctgggaaa
     2701 tgaaaaactc ctgcctcaca aaacacggat tgataatccc atgccattac ttcggacaac
     2761 ggtagagccg caaaagccgg agcaaaggga agccctgtta aatgccctcg cagagattgc
     2821 tgatacagac cctcttttgc attttgacat tgatactgtt acccatgaga ttatgttatc
     2881 ttttttgggg aatgtgcaga tggaagtcat ttgtgccatc cttgaggaaa aatatcatgt
     2941 ggaggcagaa ataaaagagc ctactgttat atatatggaa agaccgctta gaaaagcaga
     3001 atataccatc cacatagaag tcccgccaaa tcctttctgg gcttctgtcg ggttgtccat
     3061 agagccgctc cctattggaa gcggagtgca gtatgaaagc agagtttcac ttggatattt
     3121 aaatcaatcg ttccaaaatg cggttatgga gggggttctt tatggctgcg agcaggggct
     3181 gtatggatgg aaagtgacag actgtaaaat ctgttttgaa tatggattgt attatagtcc
     3241 tgtaagtacc cccgcagact ttcggctgct ttcccctatc gtattggagc aggctttaaa
     3301 aaaagcaggg acagaactat tagagccata tctccacttt gaaatttatg caccgcagga
     3361 atatctctca cgggcgtatc atgatgctcc aaggtattgt gcagatattg taagtactca
     3421 gataaagaat gacgaggtca ttctgaaagg agaaatccct gctagatgta ttcaagaata
     3481 caggaacgat ttaacttgtt tcacaaatgg gcagggagtc tgcttgacag agttaaaagg
     3541 ataccagcca gctattggta aatttatttg ccaaccccgc cgcccgaata gccgtataga
     3601 taaggttcgg catatgttcc acaagttagc ttaacagctt gcaaaagtca tataaaatga
     3661 gatttgaaag gattagagac taattatgat gaaatgcgaa tggatattgt gtcctgtttg
     3721 tgggagcaaa acccgtaata aaattaggaa ggacactgtt ttggagaatt atccccttta
     3781 ttgtccaaaa tgcagacaag aaagattgat taaagttgac aacttgaaga taactgtcat
     3841 caaagagcca gacgcttaag acgcagagcc gatgaaattg tggaacaatt cacgaatcat
     3901 cggctctttt tgtttcgtat ttgaaagaac aaactcacca aataaaaaaa acgatattcg
     3961 ggtgggttat tttgttatac cctaaattac cctctgaatt tgtttttaaa tttggaggga
     4021 tttttttatg tccttttttc gggcagttat ctatctgctc atacgaagca aaatttatca
     4081 atacatagca tatcagagaa cggcaggaaa ccagttaaaa aaatttctgc cagtgcaacg
     4141 gtacttctca ccttgaaagt agaagtacaa aggcttttag tgcttttggg tattactttt
     4201 tatttttaaa gcataataga cccattaaaa tgctttaaat ggctagttga tgtttaagct
     4261 gaaatgaaat tctagttttt ctttttggtg taaaagggcg aagccctaat tttcattgga
     4321 tggctagaat attataaaaa ttcatttgac ataattagta tacgcgtgcg cgtgggggac
     4381 acacacatag ctaaaaaatt aaaaatacta tatatttaaa tcattataaa atcaatgttt
     4441 tagcttatcc tatgaaaaaa tagctaaaat taaaaaataa aaaagttaaa ttctataaat
     4501 cattataaaa tcaatgtttt agcttatcct atgaaaaaat agctaagttt tatctttttt
     4561 gtaaaatatt gatttggata cttaattgta gagttatatt ttttagagtt tgttttagtt
     4621 ttttataagt attttattag aattttttat ttataatagt ccgagtaatt attttgtttg
     4681 ggggctttgg gggatttttt aaaatctctc actctcacgc aggcttagca cttttactta
     4741 tggttactat gtatcctata cttgtacgct ctggtgtttc aaaactttct gccttaagtg
     4801 tgattgcgat ttgtcaatat atcgatcatg gacctggaag tggaaatgtg atcatggcct
     4861 cagaaaaagc tgaagttgat cctgcaattt attttgttca ttatcaactc cctacaacct
     4921 tgcctatcat tatagctgta ggtattgcga tatatctttg caataaattt tttgacaaaa
     4981 aagataattt tgtcttcaat gcacaagaaa ttgaaaaaga actaaatgaa aatgaaggta
     5041 aagaaaaaga acttaaaaag cctcctagaa tttatgcgat tttacctata attcctttgg
     5101 ttttaatcct aggatttagt tccgtgcttg atagcatctt ggttttaatg ggaataagta
     5161 gtgctgaaga agttaaagca gctgctagta ctgccattaa aatgaatgtt ccagtagcaa
     5221 tggtgatttc aacttttgtg gctattattt ttgaaatgat acgctataaa agtatagtag
     5281 aaactcttaa ttctattatg attttcttta aaggaatggg acatttattt gttatcactg
     5341 tttctttgat agtatgcggt caagtatttg caagcgggct tttatcggtt ggctttgtag
     5401 ataccttaat agaattttgt aaaaatgcag gatttggagt acttgctatc atcatcgcag
     5461 tttcaatttt acttgcagtt tgtgctttct taatgggttc tggaaatgca gcatttttta
     5521 gctttgcccc acttatccca aatatagcaa aacattttgg cattgaaact atcaccatga
     5581 tagcacctat tcaaatcatg acaggctttg gaagatgtgt gagccctata gcacctgcta
     5641 ttttagctat ctcagctatc gcaaaagtaa gtccttttgc tgtagttaaa agaacagcta
     5701 ttcctatgct tgtagcggct attgtaaata tcattatgac ttatatttat ctttaaaagg
     5761 agacaaaatg aactcaaaaa ccaaacttat tcattgcggt agaggtgatc aaaatgttga
     5821 agtaagatca gtcaatccta cacttatgcg tgcatcaacc atacttttta aagatcacgc
     5881 aacttggcaa aaatacagag gattaagaaa aacagatcgt gttttaagtt atggagctag
     5941 aggaacaaca accaattttg aacttgaaaa acttatttgc actctagagg gtggttatag
     6001 agcacaactt ttcccaacag gacttgcagc attagctatg gtgcttttaa actatgcaag
     6061 caaagatgca cattttttaa tcactgatgc aatttatggg cctgtaagaa cgatttgcga
     6121 attattttta gacaaaatgg gagttgaaat tgatttttta aaagctgatg caagtgatgt
     6181 agaagaaaaa atcaaaccta ataccaagct tatcctatgt gaaagtccag gttctatact
     6241 ttatgaaatc atagatttac caaaactttg caaaattgcc catgcgcata atatccctgt
     6301 agctattgac aatacttatt ctagtggata ttttctaaat cctttagaac ttggagtgga
     6361 tatttcagtt atcgccgcta caaaatatct tagcggacac tctgatgtaa ccatgggtat
     6421 agtagtaatc aacgaaaaag aatggaaaaa ttttgacaaa cttccagaag ctttaggctt
     6481 tacaacaagc cctgatgatg cttacttagt acttcgtggt atgagaacac tagatgtaag
     6541 aatgaaagcc catgaaaaaa gtgctgatga aattgtagag tttttacaaa gtagaaaaga
     6601 aattaaaaca attttctatc caaaactcaa atcccaccca aatcataaaa ttttcatgcg
     6661 tgatcataaa ggtgcaaatg gtatgattac catagaattt gcagaaggtt atagcaaaga
     6721 tgatgctatt aaatttgtag ataaactaga atacttttca attggtgcta gctggggtgg
     6781 atatgaaagc ttagccaccg taactactcc gcctagaact gcaacagacc taagtgcaag
     6841 aggaccattt gtaagatttc atataggtct tgaagacact aaagatttaa ttgctgattt
     6901 aacacaagct tttgatagta ttaaagaata aggagataag atgacaggaa ttagcgtatt
     6961 tgatcataga ttactagcag actcatggag cacgcaggaa atgcgtgcta ttttttgcga
     7021 acaaaaccgc atacaaaaat ggctcgatgt tgaagcagct ttggcaaaag cacaagcaaa
     7081 acttaaaatt atccctaaaa aagcagctga tgagatcgca aaaaaagctc attataaatt
     7141 tatggatatg gactttatct ttgctgaatt taaaaagacc aaacaccctt tagttcctac
     7201 tgtaagagga ttagaaaaag cttgcgataa taatttaggc gaatatgtac attttggagt
     7261 aaccactcaa gatatcatcg atacgggact ggttttacaa tttaaagaag caatgactct
     7321 tgtaaaaagc gaattaaaag ctatcgcaaa agccttagcg aaactagcta aaacccataa
     7381 aaacactgct ataatgggaa gaactttagc acttcaggct ttgcctatta cttttggaca
     7441 taaagtggct atttggttaa gcgaacttga gcgtcatttt gaaagaatac ttgaacttga
     7501 aaaaagactt tatgtaggca gtatagtagg cgctgtagga actaaagcaa gtttaagtga
     7561 tgagtgcaat gaagtagaaa aactcacttt agaaaattta ggacttgatg tgcctaatat
     7621 ttcttggcag agcgcacgtg atcgctttat agaacttggt tttgtactag gcaatatcaa
     7681 cgcaaccttt aacaaaatcg ctcatgaaat tttaatcctt tcacataata aaattgatga
     7741 agttgctgaa ccttttggca aaggacaagt aggatcaagc actatgccac acaaaagaaa
     7801 tcctgcagta agcgaaaatg cagttacagt aagcaatgcc tttaaggcaa atttagccat
     7861 tttaagcgat attgaaagac atgaacatga aagagatggt caagtttgga aaatggaatg
     7921 gaagctttta cctgaaatgt ttttaatgct ttctgtggtt ttagcaaata tgaaattcgc
     7981 tcttagtgat ttagaagtaa aaaaagacaa aatgcttaaa aatttaaata ctcttaatgg
     8041 ttttgtttta gcagagcgtg ttatgtttgc attaagtgat cattatggaa aacaacatgc
     8101 ctatgaaatt gtttatgaaa atgctatgct aggtatagaa aaacaaaaaa cttttaaaga
     8161 agttttactt acagataaaa gagtatctaa ggtattgaaa gaaaaagaaa ttgatgcttt
     8221 acttgatgca acaacctatg taggatatgc accaaaactt gtagatgaat ttttagcaaa
     8281 aatcaaaaat agcgctatct taaaatagga aaaatcatgt tctatagtga aattttagcg
     8341 gattttattt tcaatcttaa atatgaaaat atccctaata cagttgttca aagggctaaa
     8401 gaacttatgc ttgatagcct tggaacagct atagcagcaa gcaaagaaga atgtgtttta
     8461 aatgctttta aagcttttga aaatttaagc acagaaaaaa aatactccta tttgggtaaa
     8521 tgatcaaaaa ttagatccta tatacgcagc catgctagat agcattgctt ctcatgcgtt
     8581 agattttgac gatacgcata cagaagcgtt ttgcatgcaa gtgcgatttt aactccactt
     8641 tgtttaagtt atggatttca tgttagtaaa gatgcaaaaa aaatcatcaa agcttttata
     8701 ataggctggg aaattgcagc tagagtaggc attgcaagta aaggcacttt tcataagcgc
     8761 ggttttcata ctactgctat tgcgggaatt tttggaagcg tgagtgcaag tgcaatcttg
     8821 ctggatctta acaaagaaca aatcatcaat gctttaggac ttgcaggaag ttttgcaagt
     8881 ggggttaatg agtttttatc caatggatct aattcaaaag ttttacatat tgccaatgct
     8941 attaaaaacg gcattatggt agctcatttt gctaaaaaca atatgagtgg acctttgagt
     9001 atttttgaag gtagggataa tatctttaaa tgttttggta tagaagaaga atgcgataaa
     9061 acagaactta gcaaagcctt aggtgaaatt tggcaaacca tgcaagtttc aatcaagtct
     9121 tatccaagtt gtcattttgc tcatgggctt attgattgtg ctattgcttt aaaaaatgat
     9181 ggtttaaaag ctgatgaaat taaaagtatt attgctttgt agatgaagtt cctatttctt
     9241 ttatctgcga tcctttggaa gcaaaataca ctccaaatag tacttatgaa gctaaatttt
     9301 ccatgccttt tttaatggct ctaggattct ttgatggtaa aatcactctt gaatcttatg
     9361 aaaatttaaa gcgtgaagaa gtactagaat ttgctaaaaa aatcagttac gaaaaaagaa
     9421 aatctcaagg ctttccaaaa tattttccag ggcatttaga agccagtttg caagatggac
     9481 gcacaatcca aaaagatgtt tttataaata aaggtaattt tgataatcca ttaagttttg
     9541 aagaattaaa agctaaattt ttagccaatg cacaaattta ccttgataat gctaaagcta
     9601 acaaaattct agatcaaatc atcaatctag aaaatttaaa ccacttttct ttttaaatat
     9661 taatccttct ttttataaga aggataattt cattacactt ttttattata atatttatta
     9721 ttaatttagg aattacaatg actttagata atttaaaaga tggacaaaag gctattattg
     9781 tcaatttaag cgctcaaaaa gaactcaaaa atagactttt aagctttgga tttatcaaaa
     9841 ataaaaactt gaaaaaaatt cactcctctt taaaaaatgc caccataatg gtagagcttg
     9901 atgcaagttg tgttatccta agatctgatg aagctaaaac catagaagtg aatcttatat
     9961 gaaaaaaatc aaaatagccc ttgtaggtca gcctaatgta ggcaaaagtc ttcttattaa
    10021 tgcgctttgc aaagctaata tgaaagtagg aaattttagc ggagttacta tagaaaaagc
    10081 aagtgcaaaa actttttaca aaaactatga atttgaagtc attgatttac caggaactta
    10141 ttctttagat ggatatagtg aagaagaaaa aatcacacgc cattttttaa atcaaaatga
    10201 ctatgatgtt attgttaatg ttttagatgc taccaattta gaacgtaatc ttatccttag
    10261 tgcagaactt ttaagcctta ataaaaaaat gcttttagct ttaaatatgt gcgatgaagc
    10321 caaaaaagaa ggtatagagc ttgacacttc tattttaagc caagaatttc aaagtcaagt
    10381 tgttgaaatt tcagcaaaaa caaaagaaaa tttagaactt ttgctgcaaa aaattattat
    10441 tttatttgaa agtaaattta ttccaagatc tcaattttat actccgcttt gcgaaaaaag
    10501 tccggaaaaa gaagatttat tatattttat taatgaactt tcaaaaaaaa ttatcacaca
    10561 caaaaaagaa gaaagaaatt taaccaaaaa aatcgatgcc ttacttatcc ataaattctt
    10621 tggcttacct atatttttat ttttaatgtg gcttttattt caactcacct ttagcttagg
    10681 gcaaattcct atggattata tagaatcagg ctttaatgcc ttaggtgaac ttgttaaaaa
    10741 caatatttct aataccttca tcgcttcagc tttggctgat gggattatcg cgggtgttgg
    10801 tgctgtgata ctttttttgc ctaatataat gattttattt ttaggcatag ctcttttaga
    10861 aaccacaggc tatatgtcaa gagtagcttt tttacttgat gggattttac ataaatttgg
    10921 tttgcatggt aaaagtttta ttccactaat cactggcttt ggttgttcgg tacctgcttt
    10981 tatggctaca cgcactctta agaacaaaag agataggctt ttaactcttt ttgtgatcaa
    11041 ttttatgagt tgtggggcaa gacttcctgt atatgtgctt tttatcggtg ctttttttcc
    11101 aagtgaaaaa gcaggaaatt atctttttgg aatttatatt ttaggtgcga ttttgggact
    11161 ttgtgctgca aaatttttaa gaatgacagc atttcgtgga cttgatgaac cttttgttat
    11221 ggaaatgcca aaatatcgta tgccaaattg gcatttagta tggtttatgg tctttaataa
    11281 agctaaaatg tatcttaaaa aagcaggaac tttcatactt ttggcctctt tgctcatatg
    11341 gtttgctagc aattttccaa aaagtgaaga aaatttaaat gattttaatg ctcaagaaag
    11401 agctatagaa caaagttatt taggacaatt tggcaaaggc atagaaccta tttttaaacc
    11461 ccttgagtta gattggaaat taagcgtatc tttaatcagt ggtttggctg ctaaagaagt
    11521 gatgatctca actatgggcg tgctttattc actaggaaaa gatgtagatg aaacaaataa
    11581 tgatttaaaa ggaattattg ccaaaaatat acctatacca agtgcagtgg cttttatttt
    11641 atttgtaatg atttataatc cctgctttgc agcaactata gtttttttca aaagaaagtg
    11701 gaaagctaaa atatactctc tttctctttc tttttacctg cacaagtgct tatatagtag
    11761 cttttatagg gcttcatatt gctaaaattt tattaaatta acttgctttt aatgatgaaa
    11821 ttttagtaat attatcttca aaagctttta aaatactata agcaatacct tcaaaatcaa
    11881 gcccaccgca aagatagatc aaagtcatac gaaaagattt actcacatca agctttggtt
    11941 tttcagcatt catatttaac ttaaaatcat aaggacttgc atgtttaaaa gcgtaatttt
    12001 ttgccgcaat taaaaaatca ttcttatctt ttaaaaatgc gcctttaacc aaaataaaac
    12061 tcatctcaag atatttccaa aaatcttttg aaggcatagg attttcatca aaattttgtt
    12121 ctataaaagc atagtttttc tcaaaggatt ttttataatt ttctacaagc gaagcgccta
    12181 atttattttt agctatattt tgtaaaataa gttttatatt gctttcaaat tcaaaatcta
    12241 tttgttctaa aattttaatt tgctcttcta gaaaaaattc ctgttttaac tcttcattgc
    12301 aaagtttagc gtaagaaaaa atatttgcca taggtttttc ataattccca aactcatccc
    12361 aaaaattttt ctcactacag gctatacaac catgtcctgc agccactggc caagaagttt
    12421 tagcattaaa tttcacttta ggacagttgt tgtaagtata aggtccttta caacctatct
    12481 taaataaaca agctccattc tttgcagctt catcgtcaaa atgttcagca aaaatcccac
    12541 tttcaaattt cgcctttctt tcacacatat catgcaaaca tttaccataa gcccacacag
    12601 gacgattttg ctcatcaagt tcaggcaaaa ctccaaataa agcaaaaaaa cttaaagtcg
    12661 caatgatatt tatatcactt ggaggacaac ctggaatatt tactactttc tgacttaaaa
    12721 cttcgctaat accacaagtt ttactaggat ttggataagc agcctgaata ccaccataac
    12781 ttgaacaagt acccactgca aagatagcct tggctttagc ggctagtttt tctaaaattt
    12841 catagccact ctctccttgc gctcctatag taagaaaaaa ggtatcaatg gctgcaacac
    12901 caccttcaac cgctaaaata aaatcttctt ctaaaacata ctctaaaagc tcttcagcct
    12961 tagtgccatt tgccgccatt aaagtttcat gatattctaa agaaaaaaaa tcaaaaataa
    13021 gctcatcaaa acttggcaac tcagaacgca acaaactctc gctacaccct gtacattcac
    13081 aaagatgaag ccatactaac tttgttttag gtgcgatttg aaaaaatctt tgagcaagag
    13141 ctggaatttc attgcctaaa gataaatgcc tagcaagaat ttttacactt tcttcattga
    13201 taaccttatc ctcttttaaa gtagaattct caagtttttt aatgcgatct tcaagtatat
    13261 tttttaattc ttcattgcta agctttgcca ttttttatcc tttttgatta tcccaacaaa
    13321 gaacagtttg cccttcttcg tttttttcaa catcgcccat acccatgatg ttatatcctg
    13381 catcaacata atgtatttca cctgtaacac catttgctaa atcgctaagt aaatacatag
    13441 ccgaattgcc tacatcttct atactaacat tgcgttttaa aggagaattg atttcattgt
    13501 attttaaaat cattctaaaa tcccctattc cacttgctgc caaagtttta ataggacctg
    13561 ctgaaatagc attaacacga attcctttta ctcctagatc tcttgctaaa taacgcacag
    13621 aactttcaag tgcggctttt gctacaccca taacattata atgaggtaca tatttaaccc
    13681 caccaagata acttaaagtc aaaatcgaac ccttatcttt taaaataggt aaaaccgcac
    13741 gtgttaaaga aagtaaagaa tacacagaag tttgcatagc tatatcaaaa gcttcttttg
    13801 aagtttctaa aaaagaattt tctaaagctt cttttggagc aaaagcaacc gcatgtacta
    13861 caaaatcaat ctcacctaaa tcttttttga ttttttcagc gatagaatct aaatgctcgt
    13921 tattatttac atcaagctca taaacaaaat tagaattaaa ctcttgtgct ataggttcta
    13981 cacgtttttt taaagcatca tttaaaaaag taaaagcaag ctcggctcct tgatcaaaac
    14041 atgcttttgc tatgccataa gcgatagatt tattatttgc aacccctaca ataaggcctt
    14101 ttttaccctt cataatcatc ttttatcctt tgattaattt tataaaattt tctactttta
    14161 aagctgcaga gcctatcaaa actccaccac aatgatttac acttaaaatt tctttgatat
    14221 tattttcatt cacacttcca ccataaagca aaggtgcctt ggttaaactc gctaaaaatt
    14281 caagcacttt agcgatatct gtattttgtg cactcactcc cgttcctata gaataaatag
    14341 gctcataagc gataatgagt ctttcataat ttaaatcaat aatttcaagt tgttttttta
    14401 aaaactctaa agtcttgcct gaattttttg tatctaaatt ttcacctata caaaaaacaa
    14461 ttttataacc atgctcttta gcaaaatcaa atttagcctt aataaattct tcatctccta
    14521 aagctcttct ttcagaatgc ccgattaaaa cgcatttgat cccaaattcg tccaaatgtt
    14581 cttttccaag ctcgcctgta aaagcaccat taacacaagg ataaaaattt tgcgctcctt
    14641 gtatgaagtt attttctttt tctaaaaatg ctacactagg tgggaaaacg ataatatcat
    14701 cgcattttac ccctatagtt ttatttaaaa tttcagcata aattttaaaa cttgctcttg
    14761 tgtgattgca ttttaaattt gcagcaaaga tcattcattt tccttagatc ttaaagcttt
    14821 tacacctgga agttctttac cctctataag ttcaagagaa gcgccacctc cagtagaaat
    14881 aaaagtcatc tcatctgcat cacctgcgcg cgcaaccaca tcagccgtat caccaccgcc
    14941 aacaacagaa gttgcatgcc cttcgctgat ataatgactc attttaatgc taccttttga
    15001 aaatttatca atttcaaaaa cacccatagg tccattccac caaatcgttt gcgcatcaga
    15061 aatcacctct ttaaaaagtc tcacacttgc aggtcctata tctaaaccca tccaaccatt
    15121 tggaatttct tgtgctggaa caaatttcat cggcgcatct tgtgagcacg caggagcggc
    15181 tacaacgtct actggaagat aaattttcac tcctaaattt ttacctttag taagaatttt
    15241 attagcttct tctaaaagtt cttcttctaa aagtgaattt cctatatcat aacctaaggc
    15301 ttttaaaaaa gtaaatgcca tacctccgcc tatgattaat ttatctacct ttggtaataa
    15361 atttgtcaat gcttgaagtt ttccacttac ctttgaacct ccaacaacag cgacaaaagg
    15421 acgtgctgga tgtttgataa gattgcttgc aaaatcaatt tctttttgga gtaaaaatcc
    15481 tgcacatttg tgtttttcat caaaaaattt agtaatagcc tccacgctag aatgtgctct
    15541 atggcatact ccaaaagcat cattgatata aacttgaacc atagaagcaa gttctttggc
    15601 taaattttca tcatttttag tttcgccttt ttcaaaacgc aaattttcaa gaagtaaaat
    15661 ttcacccact tttaaattca tagctttggt ttttgcatct tcgccgataa catcttttgc
    15721 cataacaatt tctttatcta aaagtctagc aagacgctta gcaacaggct ctaaagaata
    15781 cttggagcta atttcttttg gacgccctaa atgagaggct aaaatcacac tacatccatt
    15841 atccaaacaa tatcttatcg taggaatagc tgatcttatg cgtctatcat cagtgatatt
    15901 taaaaaatca tcttgaggaa cattaaaatc acatcttata aaaacttttt tcttagctaa
    15961 atcaatgtct tttatagaaa taatatcact catgattaag ccttatttgc aatatatact
    16021 gccatatcta ctagacgact tgaataaccc cattcattat cataccaagc aatcaccttg
    16081 ataaaatcat ccgcaatcac ttgagttaaa tcacttgcta caatagctcc ataagaacaa
    16141 gtgataaaat cgcttgaaac tctttcatca tcatccacca ttaaaatgcc ttttaaattt
    16201 gtagctgcag cttttctaaa agcttcattg atttcatctt tgctgacttt acggcttagc
    16261 tgcgcagtta aatccacgct tgatacatca atcactggca cacgcatact ttgtccgtga
    16321 agcttgccat taagttcagg cataacaagt ttcatagctt ttgctgcgcc tgtagaagtt
    16381 ggaatgatat tttgcgctgc ggcacgagaa cggcgtttat ctttggcctt agcatcaata
    16441 atactttgtc catttgtata agcatgtatt gttgtcataa gtcctttttc tataccaaaa
    16501 ttatcttgta aaacacgaca aacaggacct aaacaatttg ttgtacaact tgcattagaa
    16561 ataatgcttt cacccttgta aagttctgaa tttactccta aaacataagt aggtgtatca
    16621 tcttttgcag gagcactcat gatcactttt tgcactccca tatctataaa ttcttgacat
    16681 tttgccatag ttaaatgcgc tcctgtacac tctaaaacaa tttgtgcgcc gtgttttgca
    16741 aagtcaagat cttttacatt gcgactttta aatactttga tttttttacc atttaccact
    16801 aaatcatcgc cttcactatc aacactgcct ttaaattcac catgtactgt atcgtattta
    16861 aaaaggtatt ttgtaagttc aatatccgta gtatcattta tcgccacaag ctcaatatca
    16921 tttctttcta agatgattct tgcaacacat ctgcctatgc gtccaaaacc atttatagca
    16981 acttttacag ccatttaatt tccttttgca aaatataatg ttaatattct acaaaaaaaa
    17041 ggttaaaatt ttaatgaaga tagcactttt tggtggcagt tttgatccac cacataatgg
    17101 acacaatagc gttgttttag aggctttgga aaaattagat attgataaac ttattattat
    17161 gcctacttat atcaatcctt ttaaacaaag tttcagtgct gatgaaaagc aaagattctt
    17221 atgggttaaa aaactttggg gacatttgcc aaaagttgaa atttgcgatt ttgaaatcag
    17281 gcaaaaacgc cctgttccta gcatagaaag tgttaagtat ctttataagc tttataatcc
    17341 tagtaaattt tatcttttaa ttggcgcaga tcatttagaa aaacttcatc tttggcatga
    17401 ttttgaaaaa ctcaattctt tagtagaatt tgttattgcc aatcgcaatg atataggaat
    17461 tcctaagaat ttcaaagatt taaaaaccaa taaaaaaatc gcttcttctt tcatacgcga
    17521 cactttaaat acaaatgagg tttgtgaaga aattaaagat gaagtaaaaa aatattatga
    17581 aaaattacaa aaaaattgat acaatttcaa aaattaaagg acaataatgc aagaaagaat
    17641 agatttaatc gttaaaattt tagatgaaaa aaaagctgaa aatatcaaaa ccattgacat
    17701 gagcgagcaa gaatactttg taaaatatgt cattattgca gctactttag gagaaagaca
    17761 cgctctatcc ttgatcgatg agcttaaaac acaacttaaa gccaaaggtg aggaattttt
    17821 aaacatagat agtagtgaag aatggagcgt gattgatctt ggcgatatac ttatccatct
    17881 tttaacacct gagcaccgag gaatttacaa tatagaagaa ttgttagaaa gtcttaaaaa
    17941 aatcaaggcg taagcttaaa atgcaaaaaa tacactaaaa atttcaaaaa aaataaacaa
    18001 attttatgat ttttttgagc tttctaatgg gcttttttgc cctcattgtc aagcaagata
    18061 tcgtttaaat ttcatagcaa gtttagtaaa taatttattc gcccatgttt tgggcggaat
    18121 ttcttctttt tctacgcgca atttttacta tattcacgca taaacaaggc tttatataaa
    18181 agagaaaagc tcttattttc atacttttct ctaaatttat aaataaactt caaatgcttt
    18241 attattctta aaccgactct ttaatatcat taaaaagttt aaatacttta gtttcaagct
    18301 cttttgcttg ctccaaagaa cttgcttcaa aacgcgtgat aagataagga ctggtattgg
    18361 acgcacgaag taaagcccat ccataaccaa aatcaatcct ggctccatcg atttcacaaa
    18421 gactctttac tccttctaag gcaccctttt ctatcgcttt tttaaattca tccacaagtt
    18481 tgaatttttc ttcctcgctt actggaattt taatctcggg agtagtgtaa agtttcggca
    18541 aggcactgat catagcttct agatcaaaac ccttataaac aagttctaaa gctcttaaaa
    18601 aagcataaat tccatcatca tatccaaaat atctatgttt aaagaaaata tgcccactca
    18661 cttcagcagc taaatcaata tctttttctt tcatcatttt tttgatatta gaatgtcctg
    18721 tttttcccat aaaaatagtt ccaaatttag ccacttcatc aaaaagattt ttagaacatt
    18781 ttacctcacc taaaatgcgt ggattaggga tatctttagc aaacaaataa caaagctcat
    18841 ccccacaaaa tacatgagtt ttactcaaag ctaccattct atctgcatcc ccatcaaaag
    18901 caaaagctaa agaataatct tgattttgat ttaaaaattc tctaatcgca cttaagtttt
    18961 cttcttctgt aggatctgga gcatggtttg gaaactgtcc atcgggctct gcaaacatta
    19021 catgagcttt taaatttaaa gccttgatta aaggctctat aacaacccca gcggctccat
    19081 tggagcaatc gattgcaaat ttataattaa aatcctttaa aaagttaaat tgctcgcaca
    19141 taaatttcac ataaaggctt aaaatatcgt atttttgagc ctctaaattt tcttcaatct
    19201 catcctctaa atgcttataa acttcttttg aaaattcttt aagttcggct ccaaaaaaac
    19261 tttccttacc tatggtgatt ttaaagccgt tataatcttt tggattgtgc gaacctgtga
    19321 tcataatatt tgcatcaaat ttcataccct cataaaggct aaaatatcca agtggagtgg
    19381 ggacaagtcc tatgttgtaa acttgtatgc ctgctttatt aagcccgcta actagatatc
    19441 tataaagctc atcagcacta tatcttgcat cataacccac gcttacattt ttacaacctt
    19501 ttgcaagcat ggtttgtccc aaacaaaaac ctatagcttt gacacttttt tcattgagtt
    19561 ctttgccata aagtccgcgt atgtcgtatt ctctaaaaat cacatctagc ataatttttc
    19621 cttaaatctt tttaataaat ttctttttat aatgtaaaat ttggatagaa aagaaaattt
    19681 tgctacaatt ttacattaat ttcactaaat aaaggaaaaa ttaatggatg aagaattaga
    19741 aaataacgaa gaaaaaaaga aaaaaggcgg ttcgcttgtt atcattatag tgattttact
    19801 ttttgttcta cttcttagta tcatgggtgt gattgcatgg cttatttcaa gtagctcaag
    19861 cgatgaaagc gaagtcaaag cggctccaaa agaagaagta aaagcagata aagccaaggt
    19921 gacagcaccg gcgcaacgcg gaagtgattt tgcaaatata ggacctatgt atcctcttga
    19981 tccttttact ttaaatttac ttagtgatag tggctcaaga tatgtaaaat gcactataga
    20041 attagagcaa aatacagagc ttttaaaacc tgagcttgat aaaaaagtag cggtaattcg
    20101 cgatatcatt atccgcacct taactgcaaa aacctttgaa gaggttagca cacaaaaagg
    20161 caaagaaaga cttaaggatg agcttgttgg aaaaatcaat gaaattctta ccgatggctt
    20221 catcaaaaat gtttatttta ctgattttgt agtttcttaa tgcgtatagg ttgcgatata
    20281 gttgccattt ctaggataga tacaatctat caaaagcatg gcaacgcttt tcttgataaa
    20341 tttctaaacc aaaatgagca aaaattgata aaatctagct caactttagc aggtttttgg
    20401 gctgcaaaag aagcagcaag taaagcttta ggtgtaggaa tttcgaaaga atgtggcttt
    20461 ttggatatag aaatttcaaa agacagtaaa aatgctcctc atttaaaact cgcttctcat
    20521 gtattagaaa aatttaaaat caattctacc tctcttagca tctcgcatga taatggtttt
    20581 gctattgcag tagttgcttt ggattaattt tatcttttgc ctatagtttg cttgtctaaa
    20641 tttcttgaaa gtatgaaatc caccacaggt tgttctcttt tattggctct tttacaatga
    20701 tctttttgaa aaaaatctgt gatttttata acaatccttg cccatttttt gcgatttctt
    20761 tcacgccacg catgagaaga aacgctctcc caagcatagc cattaaacaa gcttgcattt
    20821 acaaaatgat ctaaggctct aacaccctgt cttgctcgtg cagtattaaa aaaaattcct
    20881 ataatcacga taaaaagata tcctaaaact gctaaaggta ctattgcaca aagcaaaata
    20941 gtccctgcta atttttcttt taagcttcct tttagattgc gcttaatgcg gttacgaaaa
    21001 ttggcacgaa ttcttgcttt gactcttttc atggctctct tttactaaat tttatcctca
    21061 ttccatttgc agagcgtatg gttaaacgac ccaccacatc tggaacaaaa ccctcttcaa
    21121 gctctaattt gtattttttt aagatattag ccaaaattaa aatagcctct tgcattgcaa
    21181 aaccttgacc tatacaaatt ctttcgccta ccccaaaagg taaataagca tcttttttat
    21241 actcgccttc aaaacgagaa ggtttaaatt catgcgggtt agcccaaaag ccttcatgtc
    21301 tgtgtatcag ccaaggtgct ataacaacac ccgaaccttt tttaatcatc ttatctctta
    21361 cctttgtatc tttttttgct tctcttgcaa aaaagcctac aggaggataa agtcttaaag
    21421 attctttaaa aatatgagtt aggtatctaa actgttttaa atgtgaaatt tgtatatttt
    21481 caccttgtaa aacttgaata atttctttat aagctttttc ttgttcatca ggataaaggc
    21541 tgagtagata aagcgtccaa gttaaagagc ttgctgttgt ttcatgacct gctaagaaaa
    21601 gcatagccac ttgatctaga atttcctcaa aagaaaagcg ttgattagtc tgcgcatcta
    21661 ctactaagag taaagagcct aaaatatcct caaaattttc agcttttccg ctacttactg
    21721 catcatatct tggctttatg atatcactta aagcttgcct gatcacatcg cccgctttag
    21781 cacgcttacg atcacccaac acataagaaa gccatttagg gaaacgaaac atacgacgca
    21841 tagccgtatg tacgctttgt tcttgaaaag tcacaaaagc atctaggatt ttctttcctt
    21901 gctcttcatc taacttagaa gacatgatgg tacgaaaaat gacatcagca gtgatgaaag
    21961 tcatagcctc atccacttcg ataatagaag cattagggta tttttcaaaa cgcttcatca
    22021 tatcgcttac tgcttcactc atgagattaa aaacctttga aatacgagtc atttcaaaac
    22081 ttggacgcaa aagctctctt tgttttttcc aaacctcacc atttgtagta aaaatactct
    22141 cccctaaaag cggacttaaa agctcatgta aaaatgcact ttttgggaat tctttaacct
    22201 catccaccat cattctttta acttctttgg tatcattaat cacataaaga tcaaaatttg
    22261 gcatttttac ataacctgtt tgcattttat agctacgctc ataaagcccg tcaagccaag
    22321 atctacgctt taacaaaaaa gttaagagcg tagaagcttt atttttataa ggttttggaa
    22381 aaaaggggca ttcactcata tttttacctt ttcttctaaa aatttaggca ttatgatgaa
    22441 agaaaaaaaa tcataatcac ctttaacact aatactataa agatataaaa agtgcgcttt
    22501 gtttttatct ctttttattt ttttatactc atgtttttca tataaagtgt gaaatttagc
    22561 acttaaaaat ggaggtgtaa atttagcatt tacgccactc gtgcggaaaa aatccacttg
    22621 aggaaaacat gctccatcaa taatcgatgt gtaatcatac cattttaaat caaatcttga
    22681 aacaaattca agcttctttc taaattcatc cgcttttttt tgataactca ctaaaggaat
    22741 gcattctcct aaagtaagaa tttttaattt acgaagtaaa gataaatcta aattttgtct
    22801 taaaatacac tccaaaactt ctatacaaac tatagttcca acactatgtg ctactaaaac
    22861 aagttcataa tcttgtttat tttcattttg ttttagctta tctactatgg tatttgcaaa
    22921 aagcttgatt ctttcttgca tagtgcctgt ttttttatct tgccaagtag cacaaaaagc
    22981 acaaattctt gctatccaaa atacagctaa tttcttacct aatttaaata aaaaatgatt
    23041 tagtaaaaat cctaaaaaac atcctatgat gatagctaaa gaaaaatgca tataattttg
    23101 caaaaaagca aaacttccaa aagccaaaac caaagaaaat agtaaagaaa ataacacata
    23161 aaaaaaagga taataacctg tgataagttg ataaatcgac tctttgccaa atttgataaa
    23221 aagccctgtg atagtataaa ttctaaaaaa actataacaa tctgccaaag catctttata
    23281 attttctgac caatttttct taacaatatc attccatgtt aaaaaatgat atttagtttg
    23341 tactccttcg caagaaattt gaaaaaaagg aaattgctca tttttttcaa ttttacttaa
    23401 atcaacttta atgctaaaag catgagaata atcttttagg ttttttttaa ataaatcata
    23461 ataaaatcta taacttttag gatcatatcc tgctatataa aatacttccc tatccataca
    23521 ataatttctt tttgctttta attataacaa ctttgcttta aaagctctct taatcaaagc
    23581 tttttagtct tatttgtcta aaaagaaatt tttataaaaa ttgccgttga attgattagt
    23641 ttgtaaaaga tattttttaa aattacatac caaaacagga ttgggtttat aagcatgagc
    23701 ttcacgccaa aaaaattgaa gtttttttgg ataagataag ccttcaaaat cataaaaagc
    23761 attgccacaa accttagtcg gacagccttc taaaatagca ctaaggccta ctgttgaatt
    23821 tatagtaata caacccaaag cctttcttaa aagaactggc aagtgggtat catgaacata
    23881 taaaaccctt ccttctacat gatatttttg acttaaatca tttatgagtt tagaataatt
    23941 cttatagccc ctatccatgg gatggtgttt aaaaactaga taagatttag ctcttgcatg
    24001 gtttgcaaaa gaaagtatgg tttcctctat aaagtgctct atgctttttt tgtaatgata
    24061 tttaatttgc gtatcgctat aaacttgtaa aatcgccaaa aagtactttt tttctaaatt
    24121 ataaatcttt tcatttagtt ttttttctgt aatcttataa agatactttc tatacaatga
    24181 tctaaaccaa aataaaaatt caaaaggata taaagtgcga tgatgaagtt tgttgttaaa
    24241 aaatggagcc aaaataaaag caaacaacca atacaaaaaa gcatcaaaag ccataaattt
    24301 aaatccacct ggaatttctt ttatactttc tttggtaaaa atattttgag aaagataaaa
    24361 atttttatca cgcggtaaag aagaatttgc attcacccca tctttttcca aagtaataca
    24421 ataaggcctt aaatatcctt cttcaaaaat ccatatttca attcctaatt ctttagccac
    24481 tttaatagcc ttagcatgta taatgcgaca atcattatac attaaaatag catcgatttt
    24541 tttattttga aaaaaatctc tatagaaatt ttcaagatct ttttcatcac acttacacct
    24601 cgttccacta ggatagaaaa aaaaatctcc gccgttaaaa ttgagtttaa aaactttggt
    24661 ttggtttttt ttcattttca ttgcaagatg atgaaaaaaa tttcccacag gtccttgcaa
    24721 gagtaaaaca tttttaccgc taaattcttt tttaatttta gtgctaaatc tcatttcttt
    24781 gctaaaaatt cataaaatct tcttattttt ctaagcataa aagtttt
//
LOCUS       DARGED010000008        24673 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.008, whole genome shotgun sequence.
ACCESSION   DARGED010000008 DARGED010000000
VERSION     DARGED010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24673
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.008"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1026
                     /gene="waaA"
                     /locus_tag="SFZ84_000281"
     CDS             <1..1026
                     /gene="waaA"
                     /locus_tag="SFZ84_000281"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEG8202444.1"
                     /translation="HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKE
                     FCKKVNYLAFENFLPFWFNPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSY
                     HSYQRFSFFYKKIFSYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYT
                     KPKEKLIIFASTHKDEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEK
                     FSSLKDENKKFSKKILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFNNV
                     LISGKFIHNQKVLFEEVENVYFCEKLKDLNDKIHYLNLKAKISKKENLDLIIQTIQKG
                     IDARKSL"
     gene            1007..1759
                     /locus_tag="SFZ84_000282"
     CDS             1007..1759
                     /locus_tag="SFZ84_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8202445.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            1827..3164
                     /gene="ffh"
                     /locus_tag="SFZ84_000283"
     CDS             1827..3164
                     /gene="ffh"
                     /locus_tag="SFZ84_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG8202446.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     ITKELLTLIEEDVKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFTSKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLSGMANVVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            3229..3456
                     /gene="rpsP"
                     /locus_tag="SFZ84_000284"
     CDS             3229..3456
                     /gene="rpsP"
                     /locus_tag="SFZ84_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG8202447.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            3459..3701
                     /locus_tag="SFZ84_000285"
     CDS             3459..3701
                     /locus_tag="SFZ84_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG8202448.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            3694..4233
                     /gene="rimM"
                     /locus_tag="SFZ84_000286"
     CDS             3694..4233
                     /gene="rimM"
                     /locus_tag="SFZ84_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG8202449.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            4230..4934
                     /gene="trmD"
                     /locus_tag="SFZ84_000287"
     CDS             4230..4934
                     /gene="trmD"
                     /locus_tag="SFZ84_000287"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG8202450.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEIFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLKEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            4945..5301
                     /gene="rplS"
                     /locus_tag="SFZ84_000288"
     CDS             4945..5301
                     /gene="rplS"
                     /locus_tag="SFZ84_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG8202451.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            5434..5847
                     /gene="uraH"
                     /locus_tag="SFZ84_000289"
     CDS             5434..5847
                     /gene="uraH"
                     /locus_tag="SFZ84_000289"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG8202452.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            5871..7211
                     /locus_tag="SFZ84_000290"
     CDS             5871..7211
                     /locus_tag="SFZ84_000290"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG8202453.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            7208..7537
                     /locus_tag="SFZ84_000291"
     CDS             7208..7537
                     /locus_tag="SFZ84_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG8202454.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(7550..7756)
                     /locus_tag="SFZ84_000292"
                     /pseudo
     CDS             complement(7550..7756)
                     /locus_tag="SFZ84_000292"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            7985..11587
                     /gene="dnaE"
                     /locus_tag="SFZ84_000293"
     CDS             7985..11587
                     /gene="dnaE"
                     /locus_tag="SFZ84_000293"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG8202455.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            complement(11599..12231)
                     /locus_tag="SFZ84_000294"
     CDS             complement(11599..12231)
                     /locus_tag="SFZ84_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG8202456.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(12266..13015)
                     /gene="flaC"
                     /locus_tag="SFZ84_000295"
     CDS             complement(12266..13015)
                     /gene="flaC"
                     /locus_tag="SFZ84_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG8202457.1"
                     /translation="MMISDATIMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFIAAQSNMQLQSKIANLLQ"
     gene            complement(13054..13524)
                     /locus_tag="SFZ84_000296"
     CDS             complement(13054..13524)
                     /locus_tag="SFZ84_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG8202458.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENTTKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            complement(13537..14352)
                     /locus_tag="SFZ84_000297"
     CDS             complement(13537..14352)
                     /locus_tag="SFZ84_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG8202459.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGILIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            complement(14349..15536)
                     /locus_tag="SFZ84_000298"
     CDS             complement(14349..15536)
                     /locus_tag="SFZ84_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8202460.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLISSNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGVITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPILNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            15665..15850
                     /locus_tag="SFZ84_000299"
     CDS             15665..15850
                     /locus_tag="SFZ84_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG8202461.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVKANKF"
     gene            complement(15847..16383)
                     /gene="mog"
                     /locus_tag="SFZ84_000300"
     CDS             complement(15847..16383)
                     /gene="mog"
                     /locus_tag="SFZ84_000300"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG8202462.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATTEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKC"
     gene            complement(16404..17387)
                     /gene="corA"
                     /locus_tag="SFZ84_000301"
     CDS             complement(16404..17387)
                     /gene="corA"
                     /locus_tag="SFZ84_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG8202463.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVVSIILPLVVFKKKGWL"
     gene            17504..18550
                     /locus_tag="SFZ84_000302"
     CDS             17504..18550
                     /locus_tag="SFZ84_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG8202464.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            18561..19886
                     /locus_tag="SFZ84_000303"
     CDS             18561..19886
                     /locus_tag="SFZ84_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG8202465.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGIFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFLKDSDKKYPYPITTETTKERY
                     LSGVDFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDRPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGEEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKTCKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            19883..20692
                     /locus_tag="SFZ84_000304"
     CDS             19883..20692
                     /locus_tag="SFZ84_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEG8202466.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGYFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            20689..21528
                     /locus_tag="SFZ84_000305"
     CDS             20689..21528
                     /locus_tag="SFZ84_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202467.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPTLFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            21529..22308
                     /locus_tag="SFZ84_000306"
     CDS             21529..22308
                     /locus_tag="SFZ84_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202468.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            22312..23301
                     /locus_tag="SFZ84_000307"
     CDS             22312..23301
                     /locus_tag="SFZ84_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202469.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            23298..23936
                     /locus_tag="SFZ84_000308"
     CDS             23298..23936
                     /locus_tag="SFZ84_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG8202470.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGVYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(23960..>24673)
                     /locus_tag="SFZ84_000309"
     CDS             complement(23960..>24673)
                     /locus_tag="SFZ84_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8202471.1"
                     /translation="LFLGACSDSKNKESNASVELKVGTAPNYKPFNYKENSKLTGFDT
                     DLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATDERRQSVDFTKPYYM
                     SKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQVQSNKDLNIAVLAL
                     KNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDKNKQKDIIEIFNKGI
                     DEAKTDGFYDTLIKKYELE"
BASE COUNT         8647 a         3165 c         4269 g         8592 t
ORIGIN      
        1 catcaagaaa aagctgatgt acattttcat gcttgttctt acggggaggt aagaagtatt
       61 aaagctttgg ttttgaaatt tgattcaaga ataactacta ttactcaaac aggttttgaa
      121 tgtgcaaaag aattttgtaa aaaggtaaat tatcttgctt ttgaaaattt tttgcctttt
      181 tggtttaatc cttgtaaggt tttggtaatt tttgaagcag aatattggct tatgcttgtt
      241 tttatggcac gtatttataa ggctaagatt attttgctta atgcgagaat atctgataaa
      301 tcttatcatt cttatcaaag attttctttt ttttataaaa aaattttttc ttatattgat
      361 gaagtttttg ctcaaagtga attagataaa gtaagacttg aaagtttggg agctaaaaat
      421 gttaaaattt ttaaaaatat taaggcaaat ttagaaatta aaaataataa aatttatacc
      481 aaacctaagg aaaaacttat catttttgcc agtactcata aggatgaaga agagcttttg
      541 cttgatcatt ttaaactaga agaaaatgaa aaactcatta tcgccccacg acaccctgaa
      601 cgttttaaag aagttgaaaa tttgctttta aacaaaggtt tagaatttga aaaatttagt
      661 tctttaaaag atgaaaataa gaaattttct aaaaaaattt tgcttttaga tgctttaggg
      721 gagcttgtaa atttttatgc aatttctgat gttgttgtgc ttggaggttc tttcatagaa
      781 ggcataggag gacataatcc tatagaagcg gcatatttta acaatgtatt aatcagtggg
      841 aaatttattc acaatcaaaa ggttttgttt gaagaagtgg aaaatgtata tttttgtgaa
      901 aaattaaaag atttaaatga taaaattcat tatttaaatt taaaagctaa aatttccaaa
      961 aaagaaaatt tagatcttat catacaaact atacaaaagg gaattgatgc aagaaaaagc
     1021 ttataaactc ttagctttgc aagaaaaaat ttcaaatcgt gaagctaaag atttgattga
     1081 taagggttgt gttttttcac atggaaaaaa agttgtggtt gctagagctt tgatgagcga
     1141 taaggcaaga tttaatgtga taaaagctaa aaatcctcaa attatttttg aagatgataa
     1201 gattattgct attaataaac cttatgctta tgtgagtgaa gatttagaga aaaaatttaa
     1261 tgccaagctt ttaaatcgtt tagacaaaga aacaagtggt gtgattttgc tttgtaaaga
     1321 tgaagatttt agaaagcttt gtatagaaga atttaaaaaa cacagggttt ataaaagtta
     1381 tattgcggtt ttagatgggg ttttggctga agaggttgaa gtgaatgaac ctatttttac
     1441 tataaaagta aaaggtgggg cattaagtaa agtttcaaaa gatggtttaa gtgccttaag
     1501 tatcattact cctatcatga tgcagtcaaa aaaaacctta gcaaaaatag tcattcaaac
     1561 aggtagaact catcaaatca gagtgcatgc taaatttata aaacatggcg ttgtaggtga
     1621 tgaaaaatat gctaaaattt caagcgatag aatgtattta catagttatg aaattaaaat
     1681 ttttgattat tattttaagg ctgagctaga taatagtttt gcaaaagttg gctttgagat
     1741 aaaaaattta gatttttaaa gccatttaag aaaaaatttt gtataatgca aggtttaatt
     1801 taaaaatttt atagaaaggt gataaagtgt ttgagttagt cagcgaatct tttaaatcag
     1861 cgattaataa attacgtttt gttgatgatg aaaaagcact taagaacgct ttagaaacct
     1921 taaaaaaagc tcttttaaaa gcagatgttc atcataagat aactaaagag cttttgactt
     1981 taatagaaga agatgtaaaa caaaatggca taggtcaaaa acaattttta aatgccatta
     2041 aaataaattt agaaaatatt ttaagtgtca atggtaagaa tcaaggtttt gtttttactt
     2101 ctaaaccccc aacagtagtt ctaatggcag gtttgcaagg aggcggtaag actacaagca
     2161 ctatcaaact cgcaaattat ttaaaattac gcaataaaaa agttttagtt gcagcttgtg
     2221 atttgcagcg tttagcagca gtggagcaac taagacaact ttgtgaagct aacgaaattg
     2281 aacttttctt catagaaaat gaaaaagatc ctattagggt tgccaaagag gctttaaaaa
     2341 aggctgaaag ttctatggtg gatgttttgc ttgtggatac tgctggacgt ttggctatag
     2401 atgaagcttt gatggatgag ttaagagcag ttaaggatgt cttaaatcct gatgagattt
     2461 tttatgttgc tgatgcaatg agtggtcaag atggggttaa gaccgctgct agttttaatg
     2521 aagttttagg tatcagtggg gtaattttat caaaatttga tgcagatact aaaggtggag
     2581 tagccttagg tatagcaaaa caaatcggta ttcctttaag atttattggt gtgggtgaaa
     2641 aagtagcaga tttagaagtt tttataccag atcgtatagt aagtcgtatt atgggtgagg
     2701 gtgatttggc aactttagct gaaaaaactg ctgcgattat tgatgaaaaa gaggctaaaa
     2761 aactcaatca aaaaattaaa aaaggtgaat ttaattttaa tgattttctt aatcaaatgg
     2821 aaagtattaa aaaattagga agtatgaagt ctttaatcgg tatgatacca ggacttagcg
     2881 gaatggcaaa tgtggtaaaa gatatagatt tggataattc taaagaaatc atacgcatta
     2941 aagcaatgat ttcttcaatg actccaaaag aaagagaaaa tcctgattta ttaaataatg
     3001 ctagaaagcg tcgtatagca gagggagcag gtctttctca ggtagaagtc aatcgttttt
     3061 taaaacaatt tagcaatgca gcaaaacttg caaaaagatt ttcaggtaaa aaaggaatgg
     3121 aaagtttaac acagatgatg agtcaagcta gaaggcaatt ttaaatttta tttataaata
     3181 ctttttatag tatctataaa taaaattttt aatttttaag gagtataaat gacagttatt
     3241 agacttacaa gaatgggtag aaccaaaaga ccattttatc gtattgtagt tacagacagt
     3301 agaaaacgtc gtgatggtgg ttggatagaa agtattgggt attataatcc tatggtagaa
     3361 cctgaggtaa ttaaagttga tgcagagcgt ttagcttatt ggaaaagtgt tggtgcaaaa
     3421 cttagcgata aagttgcttc tatcactagc aaataatcat ggtagagaat tttcttagag
     3481 aatacgcaaa attaattgca gattatcctg aacagattga tactcaaaaa attgaattaa
     3541 gtgaaaattt ttttgagatt gttctttttg cacataaggt tgatacaggt aagcttatag
     3601 gtaaaaatgg aaaaatgatc aatgctataa aaaccgtaat ctctgcttat aagagcaagg
     3661 atgcaagttc ttatagagta acggtaaaag cacttgagtg aaaaagattt tgttcaagtt
     3721 gcaaaacttg gtaaaactgt gggtcttaag ggttatgtaa aattgcataa cctgagcgac
     3781 ttttcttctc aatttaaaaa agatgctact ttttttataa aaaacaccaa agaaatgtta
     3841 aagattaagc attataatgc aaacaattct actgttttat ttgaaaatta tgaagatata
     3901 gaaaaggcca aagaattaac taatcttatt ctttttcaga gtatcgagaa aagcagacaa
     3961 acttgtaaat taaaaaaaga tgagtttttt tattttgata ttttagagtg tgaagttttt
     4021 gaagaagata aaagattagg taaagtggtt gatatcttgg aaactggagc ttcttattta
     4081 tttgaaattc aaagtgatga aaaatgggtt gaaaaaaaat atcctaaaat attttttatt
     4141 ccatatttag ataaatttgt taaaaatata gatatagaaa aacgacagat tttttgcacg
     4201 caagatgctt ttttaatttt agaaaattca tgaaatttag cttcgtttct ttgttcccta
     4261 atcttatgga attttacttt caagattcta tacttgcaag agcaaaagaa aaaaaacttt
     4321 tcaaacttaa tttttataat ccaagagatt tttctaaaaa ttcctatcat aaagtcgatg
     4381 attataaaat aggtggtgga gctggacttt tgatgcaagc tgaacctatg tatgaggtgc
     4441 taagaagtat tcaagaaaaa aaagaaaatc cctattttat ttttttaaat ccaagtggta
     4501 aaacctttaa tcaaaaagac gccaaacgct taagtaaaaa agaacatata gtttttgtat
     4561 gtgggcgcta tgaaggtata gatgaaagag tgcttgaaat ttttgcgaat gaaattttta
     4621 gtatagggga ttttatttta acaggaggag aattacctgc gcttgtaatg tgtgatgcga
     4681 ttttaagaaa tgttaatggg gttttaggaa atatggaaag tttgaaagaa gaaagctttg
     4741 aaaataattt actcgaagcg cctgcttttt caaaaccttt tatttttgag aaaaaaaata
     4801 aaaaatttta tactccttca gagtttttaa agggtaatca cgctagaatt gcaagtttaa
     4861 aaactacttt ggcgtcttgc aaaacgaaat tttttcgtcc agatttattt ttagagcatg
     4921 aacgcaaaaa ataagggatt ttttatgaaa aataaatata tagaacaatt tgaagcaaaa
     4981 caaattgaag gtaaaaatgt tccagatttt cgtgctggtg atactttaaa gcttgcaatt
     5041 cgcattaaag aaggggataa aacaagaatc caaaattttg agggtatttg tattgctaga
     5101 agaggtaatg gcgtaagtga aacttttatc gtgcgtaaaa ttggcgctaa taatgttggc
     5161 gttgagagaa ttttccctat ttatagtgaa agtttagaaa gtattactgt tttgcgtcgt
     5221 ggtcgtgtac gccgtgcaag attattctac ttaagagata gacgtggtaa agcagcgcgt
     5281 attaaagagc ttaaaaaata atttataatt atttttatta taagtctaac aattaaataa
     5341 ttataattaa tttataatta ttatttattt gattttaatt attaataata ctcttgtata
     5401 atattccttg taaatattat acaaggagag aaaatgtttt ctattaaaaa aactttatta
     5461 atactagcaa gcgtgccaat gtttttgagt gctactgaat atcaattaag tactcatgtc
     5521 ttggatatta cttctggaca acctgctcct aaagtaaaag ttgagcttta taagttggaa
     5581 gcaaatcaac agtggaaaaa agtaagtgaa gaatttaccg aagaaaatgg tagaatagga
     5641 gatttattac catatgaaaa agctgaaaat agggcttttg gaatttataa gcttaaattt
     5701 tttacaaaag actattacac atcacacaaa ataaatactt tttatccttt tgtagaggta
     5761 agttttgagc tttctaaaga tcagaaacat tatcatgttc caataaccct ttctcctttt
     5821 ggttattcaa cttatagagg aagctgataa ataaaacgaa agaaaaaacc atgtgggcta
     5881 agaattcttg gaaaaactat cctataaaac agcaacctat ctatccagat caagaggaaa
     5941 tgaatagagt tttagcaaga cttgagaaac ttcctccttt ggtttttgct ggagaagtga
     6001 gaaatcttca aaagtcttta gcaagagttt gtaaaaaaga agctttttta cttcaaggtg
     6061 gagattgcgc tgaaagtttt gaaaattttg gcgctgtaaa tatccgtgat atgtttaaaa
     6121 ttttacttca aatggctata gtacttacat ttgctggtgg atgtcctgtt ataaaaattg
     6181 gtcgtattgc agggcagttt gccaagccaa gaagtagtga ttttgaagag ttagatggta
     6241 taagtcttcc tagttatcgt ggtgatatta ttaatggttt tgaatttagt gaacaagcac
     6301 gcattcctga tccacataga atgcttgaag cttattatca aagcgcaata acgctaaatt
     6361 tgttgcgtgg atttgctaag ggtggtttag cagatttaca tgaagtacat cgttggaatt
     6421 tgggcttttt aaaaaagagt gaactccata agcaatatac tgatattagt gaaaaaattt
     6481 cacaagcttt agcttttatg gaagcttgtg gaattaatac aagtaatact ccaagtctaa
     6541 gagaagttag tgtttatact tcacatgaag ctttactttt gccttatgaa gaagctttaa
     6601 ctagagtgga tagtttaagt ggagaaattt acgattgttc agctcacatg ctttggatag
     6661 gtgaaagaac aagggcgctt gatgaagctc atgtgcattt tttaagtgga gtaaaaaatc
     6721 ctttaggggt taaaatagga cctagtgcaa gtgctgatga tatcatagct ttagcaaatg
     6781 ttttaaatcc aaataatgaa gaaggaagat taaatattat tatccgcatg ggtgcagata
     6841 aaattatcaa taatttgcca aaaattttct ctaaacttaa aagtgaaggt ttaaatttag
     6901 tatatagcat agatcctatg catggaaata cggtaaaagc aggcaatttt aaaacacgtg
     6961 agtttgataa aattatgcaa gaagtgagat ctttttttga gattgcaata agcgaagggg
     7021 tttatccagg tggagtgcat cttgaaatga ctgggaaaga tgtaacagaa tgcacaggtg
     7081 gtgcaagcaa tgttactgct caaagcttgg aagatcgtta tgagactcaa tgcgatccaa
     7141 gacttaatgc ggatcaagca ttagaacttg cttttttaat cgcagatttg gtaaaaaagg
     7201 ctagaaaatg aaactttatg gtattaaaaa ttgcaattct gtaaagaaag ctatggatgc
     7261 tttgacacaa aaaggtattg tgtttgattt tatggatatt aaaaagatta atcaagatat
     7321 tttatacaca tggttaaaac aaaaatcttt tgaagaactt atcaatactg ctggattaac
     7381 ttctaaaaaa cttggcttaa acaaagaaaa agttaaaaat ttaaatgaaa aagaacttga
     7441 aaaaattgta ttggaaaatc caagttgtat taagcgtcct attatcgagt atgagcaaaa
     7501 catatatatt ggtaaggaat atgagaaaat gttatgatag agtgtttgat tacactctat
     7561 tttttattaa ttgattaatt tcattttgat atggaaatct ttcactttcg caattaataa
     7621 gttgtgtttt agagaagata acttttccgt ctacttcaac gataaaatca cctctgccgc
     7681 caatttcaaa ttctacttca acatctttga aatcgctttg tagttcttct gcaacccttg
     7741 cagcttgtgg gcgataattt caaagattgc aataagcaat ttttactttc atcatttcat
     7801 cctttgagaa gttcttttta ttaagattaa aatcttagat tttattatag tttattttgg
     7861 ctgaattttt gcctttttgt aaaatttaag ttgaaattta gggtcaattt ctttcaaatt
     7921 cagcgagaaa aatttataat ttttatcaaa attaaaataa gccttaaaaa actaaaggaa
     7981 gaaaatgagt caatttacac acttgcattt acatacagaa tattctttgc ttgatggagc
     8041 caataagctt aaagaattag ctttgacttt aaaagagcag ggtgctacaa gtgtggctat
     8101 gacagatcat ggaaatatgt ttggggcaat tgatttctat caaacaatga aagcacaagg
     8161 tttaaaacct atcattggta tggaagcgta tttacataat cacgatgaat tagatgataa
     8221 aagttctcgt cagcgttttc acctttgttt gtatgcaaaa aatgagatcg gatatcaaaa
     8281 tttaatgtat ttaagttctc aaagttatat taaaggtttg tattattatc cgcgtatcaa
     8341 taaaaagctt ttggaagatc atagcgaagg tcttatttgc tcttctgctt gcttgcaagg
     8401 tgaagtaaat tggcacttaa atacttatag tgaaagaaat gtgcgttttg gtgcaaaagg
     8461 ctatgaagca gcaaaagaag cggcattatg gtataaaaaa gtttttaaag atgattttta
     8521 ttttgaaatc atgcgtcatg gtataggcga tcaaagaatg atagatgatg atattatcag
     8581 actttctaaa gaattaaata taaaaatcat tgctacaaat gatacgcatt atacttttaa
     8641 agaaagagcg gctgcccatg aggtttttat gtgtatagcc atgggaaaaa aacttaacga
     8701 tcctgataga atgcgtcata gtgtgcatga attttatgtt aaaagccctg agcaaatgag
     8761 tgagcttttt gcagatattc cagaagctat agaaaataca caagaaatcg cgcaaaaatg
     8821 taatttagag cttaatcttg gcaatcccac tccaccgaat tttaaattta caagagaata
     8881 tgctaaagat cataatatta tcttacctga agaaacaaaa gaatttagct ttgataatga
     8941 tgacatagtt tttgaagaac tttgtaaaaa gggacttgaa gagagattaa aatttatcga
     9001 tgaaagcaag catgaagaat acaaacaaag acttgaagta gaaattaaca tcattaaaaa
     9061 tatgaaattt tcaggttata tgcttattgt tcatgatttt attaaagtgg ctaaagataa
     9121 aggtattcca gtaggccctg gaagaggatc agctgcagga agtttggttt cttattgttt
     9181 aaggattacg gatttagatc ctattcctta tagtctactt tttgagcgtt ttttaaatcc
     9241 tgagcgtgtg agcatgcctg atattgatgt ggatttttgt caagacagac gtgctgaagt
     9301 gattgattat gtgattgata aatatggagc ggataaggtt gcacaggtga ttacctttgg
     9361 taaacttttg gctaaagggg tgattcgtga tgtggctaga gtttgtgata tgagtattca
     9421 agatgctgat gagcttgcta aacttgtgcc tgaagagctt aaaatcactc ttgatgctgc
     9481 ttatgaaaaa gaacctaaaa tcaaagaatt tatcgatcgt catcctaaag gtcttgaagt
     9541 ttgggagtat gcaagagctt tagaaggatt aaatcgcaat gcgggtatgc acgcagcagg
     9601 tgttgtaatt tctaatgaaa gtttatggaa gaaaactccg ctttttagac aaagtaaaaa
     9661 tgatgaaaga catttggtaa cgcagtattc taaagatcat ttagaagatg tggatttgat
     9721 aaaatttgac tttttaggtc ttaaaacctt aacagtaatc aataatgcga tcaagcttat
     9781 taaaaagcgt tacaataaag acattatttg ggaaactata gatgtaaatg atagcaaagt
     9841 ttataaaacc atacaaagtg gaaatacttt gggaattttt caaatcgaat caggcggtat
     9901 gcaaagctta aatgcacgct taaaaccaga gcgttttgaa gatatcattg cggttcttgc
     9961 gctttatcgt ccaggcccta tggaatcagg aatgcttgat gattttatcg acagaaagca
    10021 tggtttaaaa agtatagaat atccttttga cagtttagaa aaggttttag agcctactta
    10081 tggggttatt gtttatcaag aacaggttat gcaaattgtt caaattatag gtggcttttc
    10141 tttaggaggt gctgatgtag tgcgtcgtgc tatgggtaaa aaagatcctg agaagatgaa
    10201 aaagcttaaa actgattttg cagatggagc agaaaaacaa ggatatgata gagcaaaagc
    10261 tgaggattta tgggagctta tcgtaaaatt tgcaggatat ggttttaata aatctcactc
    10321 tgcggcttat gcattgatta cttttcaaac agcttattta aaaacttatt atcctagtga
    10381 atttatggca gcgcttttaa caagtgaaga aaacaatgtg gataaaattg ctgtttatat
    10441 tgatgagatg aaaaaaatga atattaaact tttacctcca tcgattaaca aagcgatccg
    10501 tgaatttagt gctttagagc aagatggcaa ggatgctatt atatacggac ttggggctat
    10561 aaaaagtgtg ggtattcctg cagttgaaaa tttacttgaa gcaagacaag atggagaatt
    10621 taaggatatt aatgatttct taggtaagat agatcccacc aaaataaacc gtagaacatt
    10681 agaaagtctt attaaggcag gggcttttga tgagtttggt tttactagaa aagctttgtt
    10741 tgataatatg gaaaatctta gcgaagcatc gcgtaaaatg gctgaagtaa gaaaaaatgc
    10801 tgcaagttct ctttttggtg aagaggaatt aacttcaggt gttcaagtaa attttactcc
    10861 caaaaatgaa gaatttgaag tgatggaaaa attaggatat gaaaaagaaa ttttaggaat
    10921 ttatgtttca ggccatcctt tagatcgatt ttatgaacaa attaatgcca tagattatgt
    10981 taaaagttta gattttgaaa gtttaaaaaa caatggagaa attttaagta taggtaaaat
    11041 tgaagatttc aaatccatga tgagtaaaaa taataagcgt tatggtagaa ttgaaatttt
    11101 ggattattat tcttcgtttg atgctactgt atttgaaagc aatgtagaag aaatagaaaa
    11161 catcatcaaa gatgaaaatt taaaaaataa tgcctatggt tttgtattgg gatttaaagc
    11221 tgaaggaggg gagaagccta gctttttttt aaaagcaatt aaagatttgc aaagtcttga
    11281 agatggcgag attaaagcta taaaaaaatt tggagcaaaa aaagatttta aaaataaaga
    11341 agaaaatcat tttaccgcag aacctaagga atttgaaaaa aatatcatag agctagattt
    11401 gacaagattg aatagagaat taatctatga aattcatgaa attgctagaa atgcacataa
    11461 tcctaatgaa aaaaataata aaaaacttgt tttaaaagtt attagtgcgg gatcttgctt
    11521 gctttatcat acagatttta ttatctctga tagtatagta gaggaaattt ctaataaata
    11581 tgcttaagta agattgtttt acttaagatt tttaaataaa atgcttccga gtcttaccaa
    11641 gttggatccg cattttatag caatttcaaa atcattactc atccccatag agcaaatctt
    11701 agccccatgt ttttgaagaa tttcataaat tttaaatgta gtttcaaagc tttttataat
    11761 attttcttta tcttggctgt gtgatcctat gctcattacg ccacaaagat ttaaattaga
    11821 gcattcttct tgtatttgta aatattcttc tacggcttga tttggatcta gaccgctttt
    11881 gctattttca tttgcactat tgatttctaa taaagtattt aatttataat caagtctttt
    11941 gtccatagct ttagctattt taataccatt gcaagagtgc cataatatag gtttttgttt
    12001 gattaagaga ttgattttgt tgctttgtag cgttcctata aaatgccact ttatgtctag
    12061 ttttttttca tcaagatttt cttttttttg tgctagagct tggacttgat tttctccaaa
    12121 ttctactata ccttgatcaa aaagcttttc aattatactt gcatcgacat acttgcttgc
    12181 ggctacaaga cgaacgtttt tggttttttc taaaatttgc tctaaagtca ttttgataaa
    12241 aaataagccc tatttagggc ttattttatt gtaataaatt agcaattttg ctttgaagct
    12301 gcatgttgga ttgcgcagca ataaaagcag cagcattttc ttttagataa ttggcattaa
    12361 aatcattgac attttttgcc atgtcattat ttagtaaatt attttcagct gcttttgagt
    12421 tgatgctatt ttgaacactt gcattaatat ttgatgtgat ggcattgata cctgagccta
    12481 tttcacttct taaacttcca agttgatcca taaaatttgt aatactatct tgattatcta
    12541 tgcttaatcc atctgttgct aatggattta aatttgtagt ttcagttccg ctacctacta
    12601 caaaattcat agtttgaaag acattttttc cattataagt tgcattatta aaagaatcat
    12661 tgatggattc ttgtatgcgt gttgcttctg ttcttagcat tcctttttga gaatcattaa
    12721 gtgcagcatt gttcattttt actgaaagtt cattaagtct atctgcgctt tgagagatat
    12781 tggtaaggct agcatctgca atttgtaaaa cccctatagc atcataagca tttgcgacac
    12841 cttgatctat agtgcttgat tgagatctta aagaatcagc aatagctaaa ttagcactat
    12901 caactccact tatcgcgcga acagctgcaa tattttctaa agctttatcg ctagcttttt
    12961 gtgcattatt taaataataa ttttgttgca ttatagttgc atcagagatc atcatggcct
    13021 actccttctc ttttggattt atttaatatt ttatcatttt tttgctattt taaagcttaa
    13081 gaaatataaa aaaacttgca ttatcaagat gattttaatc accacttcac ttgcattatg
    13141 gatgctgata aattcttgag tttttgtagt gttttcgcct aagttttgga gttcaattat
    13201 ggtattagta aaataaaaaa caaatattaa gcttaaaatc aaaataagca aactcagcat
    13261 aaattttgaa aattttattt gaaatttcat ttcatctttt ataagagaat aaatttcata
    13321 taaaaaatta accactgaaa caaaaatcag caaatatccc atcttaataa aaatttgcgt
    13381 catcattaag ccactttgaa aatggctcaa cactccttct cctataagat tttgaggaaa
    13441 aaaaattgtt ggtgcaacaa ctattcctag tatgagttca acccctatga tggaggcaag
    13501 taaaaataaa ttaacagctt tcaagagttt ctccttttat tttttatcat aacgcatatt
    13561 cgtaaattta gctataaaag cacgattata accttgttca tctttgaaaa aatcaacaat
    13621 gaaattattt tgatataaaa ttttttccaa aatttctttt tgatcatagc caaattcgca
    13681 agctaaaaat ttaacttttt tatcaaggga aaaatgtatg atttcttcta gaatttcata
    13741 tcctttttct ccgccaaata aagcctcttt gggttctttt tgcacccaaa tatctatagg
    13801 atatgaattt ttaatatagg gtggatttga aaaaataaaa tcataatttt ctttaatttg
    13861 cttaaaatta caaagtttaa agtcaatcaa gtgatcgact ttgtgtaatt tggcattctc
    13921 taaagctaat tctaaggctt tgggattgat atcacaggct gtgattttta acccaagttc
    13981 tttggctaaa acaatgctta aaattccgct tccaaatcct atttctaaaa tcccattaaa
    14041 agtatttttt ttgcataaat ttaaaatttg aaaaagtaaa atttcactat cgtagcgagg
    14101 gattagaata ccttttttta tcttaaattc taagccccaa aaatctactt tttcaaatat
    14161 atattcaaaa ggttctccag atttaaaacg ctttataagc tcaaaataag gttcatgatc
    14221 tatttgtata tcttggttta aaaataacca agctttatct ttttttagat attcacagag
    14281 tataaatact gcttcatttt cataaccttt taagctagat ttagcttcca taagagcatt
    14341 ttttatagtc aagaaagagc cttgattcta tcactaatac ttggatgact gagataaaaa
    14401 aatgcatata ttttacttgt tttgataaaa gctttatttt ctcttgctag agctatcaat
    14461 gcatttttca tatcttcttt gcttgtaact ttagctccgt gttgatcagc tgcaaattca
    14521 ttttttctac ttaaggcgtt aagtatagga gagattaaaa agctaaaaat atttgccaag
    14581 ataaataaaa gagcaaacac gccaccattt actccttcta gatgactttc taagtaaaca
    14641 aattcaggta aatttgcaaa aacaaaaaaa agtaaaaaca tagttataac gccgttaaat
    14701 aaagctttga taatatcctt atgaacaaaa tgtccaagct catgtcctaa aacagctaaa
    14761 agttctcttt cgtttaaggc ttttaataat gtatcaaaaa gcaccactct tttgctttta
    14821 aaaagtccac caaaataagc atttaaacgc ttatctcttt tgcttgcatc aataacataa
    14881 accccatttg cactaaaccc acattgtttc atcaaagagc tgattttttt cagcaaattt
    14941 tcatcgtcta gttttttcat tttattaaaa ataggtgcta ttaaggtagg gtagatgaga
    15001 tttataatca ctataataca aaaggcaaaa ataaaggccg caatccacca aaaagttcca
    15061 aaaaaatcat agcaaaaaag caaagcataa aggattaaaa atccaaatat taaagttaaa
    15121 ataagacttt tcatagtatc tttgataaaa agttttacag tcatatttga aaaaccatgg
    15181 gctttatctt tgataaaact ttcataaata cttaaaggta gatttaaaat acttgtgatt
    15241 attaaaaaag ataataaaaa taaagtattt tcaaaacgag tgttgcttga gataagcaat
    15301 tctttaagat ataaaaatcc aaaacctatc catgcaatat tgatgattaa attataaaaa
    15361 ttggaaaata gtttaaattt ttcattttcg atggcaatat ctgctgcatt ttgatagtct
    15421 ttttcgctta aaatttgagc ttgtttgtct ttttctcttt ctaagaaacg aatttgagca
    15481 taggaaatcc aagataaaag tgctgtgtaa agacataaaa ttgcaattaa agtcattatt
    15541 tttccttgat tggttttttg cgaattctag cttaaaataa tgaaataaag ttaatagttt
    15601 aaaatctaaa ataatattct tttcaactaa gttggtgtat atttataaaa aaaaggatta
    15661 aagaatgttt tttaagaaaa agatttcaca aaagcaaaaa gaaaagccta aaattccaat
    15721 caatgatgtg attttagatg acaggctttg taagtttaaa aataaagtac aaaagataag
    15781 taaagatgag gcttcagcaa gtctgcttgc tagacaatta agcaggcttg ttaaagctaa
    15841 taaattttaa cattttttct tagggcgaaa aaccttaata acttcatcat ttgcttctat
    15901 ataagcgcct tctatcaaat cgatacagta aggtatagcc ggaaaaacag gctctaggca
    15961 ttcttttata gccttaggat ttcctggtaa attaatgata aaagatttat tgcgaattcc
    16021 tgcactctgt cttgaaagta tagctgttgg gacatatttt aaactttcta agcgcataag
    16081 ttctccaaaa cctggcatca ttttatcaca cacggcttcc gtggcttctg gggttacatc
    16141 acgaagtgct ggacctgtcc ctccgcttgt aacaatcaaa tcacattttt tttcatctgc
    16201 tagataaagt aattttttaa tgatcaaatc ataatcatca gggattaatt ctttatgata
    16261 aataatatca ttttttatat atgaatttaa cactctttca atttcagtag tagctttatc
    16321 ttcatatata ccactacttg ctctatcgct tagggtcaaa attcctatgt ttattgtatc
    16381 cattgtttct ccttaataaa tttttataac catccttttt tcttgaaaac aaccaaaggt
    16441 aaaatgatag aaactaccat cacgccaagc actatgggat aagcatagtg aagttcaagt
    16501 tcgggcatga atttaaaatt cataccataa acagttccta ttaaagtagg tggcatcatg
    16561 gcaacagttg caacggtaaa aattttaatg attttgtttt gttctatgtt gatttggctg
    16621 gctaaaatgg tttggatatt atctaagata ttaagttgcg aaacactaaa ttcaaccaaa
    16681 gaatttaagt cttttaaaac tatagtgaga ttttgtttta tatctttatc gattttatcg
    16741 ctttttagca aagaagtcat agcacgacgc ttatcaaata aagaatctct tacgcgcata
    16801 ttaagctctt gcaaacttga aatatccttt agcatttcat cataactata ttcatctttt
    16861 ttttctaaaa cacttgttct taagcgtctt gcttctttat ctatccattc tagtaaatcc
    16921 gcatcttttt caacgcgtac ttcaaacatt ttatcaataa tatcaaaacc atcttcaaaa
    16981 ttcttcggac tagctaaaat ccttgcttga atttcttcaa aagtgctaaa ttcgttatat
    17041 cttatagtaa ataagatatt tttagcggta gcaaaagtaa caatttctgt gcgaagcttg
    17101 attaaattcc tatcctcttc atcactttta agatctctta ctaaaaaatg agcattgatg
    17161 gttattgtcg cattatcttc ccaatatttt gcgctaagct ctatttcttc cctttcttct
    17221 tttgtaggaa actcaagatt aaattcactt gatataaaag caatttctgc tgcacttgga
    17281 tgaagtaaat caatccataa aatattttgc ggtagttctt gactatcgag attaaaattg
    17341 attctttgaa ctaaagcatt ttgagttttg atataaatat aaagcatgat cgctccttgt
    17401 ttatgacttt aaaattataa ccttgtttgc ttaaaaatta acttgtttct aaaatgtttc
    17461 taaaactcat taaatttcca aaatattttt tgaaaggaaa aaaatgagta agaaattttt
    17521 cttaagttta ggtcttgttg ctttattgtt ttcaaattca caagctattg atgagaattt
    17581 gattaaagct gcgcaagcag aaggtagggt aaattcttta gctatgcctg atacttgggc
    17641 aaattggaag gatacttggg cagatcttaa aaatctttat ggcatagaac atagcgatac
    17701 agatatgagt tcagctcaag aaattgctaa atttaaagcc gaaaagaaaa atgcaagcgg
    17761 tgatataggg gatgtagggg cttcttttgg agagatagcg gttaaacaag gagtagctca
    17821 gccttttaag acaagttact gggatcaaat tccaacttgg gctaaagata aagatggaaa
    17881 ttggctttta gcttatacag gaaccatagc ttttatagtc aataaagatg tagtaaaaga
    17941 tatacctaaa acttggcaag atttgcttaa gggaaattat aaaattaccg taggtgatgt
    18001 aagtgtagcg gctcaagctg tgagtgcagt tttagcagct aattatgcct taggtgggga
    18061 tgaaaaagat ttaagtcctg ctttagcttt ttttaatact ttagccaaac aaggaagact
    18121 tgtaaataat gatgtaagta tagccaatct tgaaaaaggt gaagttgaag tgggtttagt
    18181 ttgggatttt aatggtttag gctatagaga taaagtgggc aaagatcgtt atgaagtttt
    18241 aatccctgct gatggtagtg ttatttcggg ttatacaact attatcaata aatacgcaaa
    18301 acatccaaat gcggctaaat tagcccgtga gtttatactt tctgataaag gacaaatcaa
    18361 tctagcaaaa ggttatgcaa ggccaataag aattgatcat attaccttgc cagatgatat
    18421 aaaagctaaa cttttaccaa gtgagcaata caaaaatgca agagcaatca aagatcaaaa
    18481 agcttgggaa aaaagcgcta aagaattgcc acaactttgg caagaaaaag ttatagtgga
    18541 tatgaaataa aggagattgg atgaaaaagg ttattttaac aagtgctatg ctttgcagtg
    18601 ttttatttgg agttcaagag tatgaggcca atttagcagg gcatattatc atagattcta
    18661 aaagtacagt aaaacctcct aaggatgctc ctgatttttt taaaacttat gggaaatttg
    18721 caaatatcac tagagaagaa aaaattggaa tttttaaatc taagggaaac agggaaacag
    18781 atttttattt accttttaaa aatcaaccta tacaaggaca tagtgggata aaatatattc
    18841 caaaaaaaga tgttttttgg gtaattagcg ataatggctt gggtaaaaag tataattctt
    18901 atgatgccat gctttatgct cacgagttta aatttgattt taaaaactca aaatacgaac
    18961 ttttaaaaac agttttttta aaagatagtg ataaaaaata cccctatcct ataaccaccg
    19021 aaacaaccaa agaaaggtat ttaagtgggg ttgattttga tactgagagt atacaggtta
    19081 tcaatgatga attttatata ggtgatgaat ttggtcctta tttgcttcat tttgataaga
    19141 atgggaattt aaaagaagtt tttgatgtgt atgtggaggg taaaaaactt atttctcctg
    19201 ataatccaag tttaaaattt agcgataggc ctgatggaga aaatgagaaa tttaatatca
    19261 aacgttctaa aggctttgaa gctatggcaa gctctaaaga tggttctaaa ctttatttgc
    19321 ttttagaagg aagcatttat aataacaacg cttatgagaa tgaaaaaggc gaagaatatc
    19381 taagaatcat agaatttgat gtaaaaaata aaaaattcac tggaaaaact tataaatatt
    19441 tcttagaaga taaaagccat tccataggtg attttaatat gatagatgat aaatacggca
    19501 tcatcataga aagagatcaa aaagaaggca ctaaagataa gacttgcaaa gaaggtgaag
    19561 atactaagca ttgttttaat aatgtagccc aatttaaaag aatttacaag gttaaattag
    19621 atgataaaac ccatgaagct caaaaaattt cttatataga tcttttaaat attaaagata
    19681 gaaataaaat ttctaaaaag cctttggtaa atgataaatt tgtttttcct tttgaaacca
    19741 tagaaggtgt ggatatagta gatgactctc atatagtcgt agaaaatgac aataactttc
    19801 cttattcttc aagtagagaa cctaataaaa ctgatgataa tgaatttatt ttacttgaag
    19861 taaaagattt tttaaagagt aaatgatgtc caaagttatt ttagttgtgc ttgatggctt
    19921 aaattgtaaa agtgctagta taaatatggg atatttaaat gcgctttgca aagagaattt
    19981 aggcaaattt tattctttag aatgcgaact tcctagtatg tctcgtcctt tatacgagtg
    20041 cttattaaca ggcgtaaagc ctgttttaag tgggataatt aataataaat tgagtttttc
    20101 aaaacaaaca agcatttttg acctttgcaa agaacaaggc ttaaaagctg gaggcgcagc
    20161 ttatcattgg gtttttgagc tttataataa aaaagaattt attccttctt tacatcgcca
    20221 catagaagat gaaaatttaa ctttgcctta tggatatttt tattatgaag atgattattt
    20281 agattctcat ttatttgcag atggggagca tttaagaaac aaatataatc tagattttac
    20341 tcttatacat tctatgaata tagatgatgc aggacataaa tttggctcac actctattga
    20401 gtatgctaat aaaaccaaaa aagttgatat tttgatttct gagtatttgc ctacttggtt
    20461 agaacaaggt attaatgtaa tcatcacaag cgatcatggt atgacagagg gtaaaagtca
    20521 tggaggctta agtgaagatg aaattttagt gccttttttc acttttggta gtgctttttc
    20581 gtatgaaaat gccaagataa aacaggatga aatttgtggc agtatctgtg aaattttagg
    20641 acttaaacac gataagagat ataatgatga aattttaaag gccaaaaaat gaaagaaaaa
    20701 tttctagcat ttttaagtat tttacctttt tttatagttt ttactttttt tatgatagca
    20761 cctttgattt ggattgtttt taatgctttt tatgtagaag aggatgaaat ttattcttta
    20821 gccaatttta tacatatttt tgagtccaaa ttctatctac aaagcattat aaattcttta
    20881 caaatcagtt ttatttctag tatttttgga cttttaatag ggcttttggc gagctattct
    20941 ttatttattt tagctccatc aaaaatatgt aattttctct tttctttaaa tactatgata
    21001 agtaattttt caggagttcc tttagctttt gctttcatta tagttcttgg aagcaatggt
    21061 gtagttaatg tgtttttgaa gaatttaggt atagagcctt ttgttagtgt ttatgctaat
    21121 ttcggggtaa atattgttta tgtgtatttt caaattcctt tggcgatctt gcttttgctt
    21181 ccagctttta aaagtcttga aaattcacat ttaaatgctt gtaaaatgtt aggtggaggc
    21241 aattttttat attggttaaa aatagctttg cctttgctcg ctcctacttt gtttggtgtt
    21301 tttgtgattt tatttgccaa tgcttttgga gcttatgcga ctatttatgc tttaagttcg
    21361 ggaaatttta atgtcgctcc tgtaagaatc gctgctttaa tcgcaggcga tatcaatctt
    21421 gatccttata tggctagtgc tttaagtatc attataacta ttatcatgct tgttgttacc
    21481 tttatagcca atttcctttc taaaaaatat aattttaagg tgctttaaat gaatgaaaat
    21541 ttgagtttaa aagctaaaat ttatcattat gcagttttgt ttttggtttt tttgttttta
    21601 gctttgcctt taatggctac ttttttatat tctatttcca cttcttgggg tgtaagtgtt
    21661 ttgcctgatg atcttacgct taaatggtat caagaacttt ttcatgacga aagattttta
    21721 cttgctcttt ggcattcttt gcttgtttgt gtgggcagta ttttactttc tgtgattctt
    21781 gtttttcctt tggtttttgt gctaaattat tattttttaa aattaaaagc ctttgtaaat
    21841 atacttatta tcatgccttt tgctgtacct cctatagtta gctgtgtggg gcttttgcaa
    21901 ctttatgctg acaatatagg aggcacagct tggatactca tttttactta ttttactata
    21961 gctttgcctt ttatatatag ggctttagat aatgctatgt ctaatgtcaa tttaaatgaa
    22021 ctcatcgcat ctaatgctat gcttggaggt tctttaatgg gagcgatttt taagcttgtc
    22081 ttgcctaatt taagaaatgg aattttggtg gcagtttttt taagtttttc ttttttaata
    22141 ggcgaatttt tatacgcaaa tattcttgta ggaagtgctt atgagacttt gcaagtttat
    22201 ctttataata tcaaaaatca aagtgggcat tattctagtg ctttggtaat agtttatttt
    22261 gtgttaattt ttataacaac ttttatagct agtttgatta aggagtaaaa aatggcttat
    22321 ttaaagatta aaaattttaa aaaagcttat ggggataaaa ttatttttga agatattaat
    22381 tttagtgcta aaaagggtga gtttataacc cttttgggcc caagtggctg tggaaaatcc
    22441 actcttttaa ggtgtatagc agggcttagc caaattaatg gaggaaaaat ttctttaaat
    22501 gataaagatc ttactaaatt aagtcctcaa aaaagaaata taggtatggt ttttcaaaat
    22561 tacgctcttt ttccaaatct taacgttttt gaaaatgtag cttttggttt aaagatcaaa
    22621 aaaatggata aaaaggacat agaaaaaaga gtgaaaaaaa tgttaaaact cgtcgagctt
    22681 gaagaatacg ctaaaactta tccacataag ctttcaggcg gacaaatgca aagagtggct
    22741 ttagcaagat ctttggtgac taaacctgat ttacttttgc ttgatgagcc tttatcggca
    22801 cttgatgcta aaattcgtaa gcatttaagg gtgcaaatta aagaaattca aaaagaactt
    22861 gaactcacca ctatttttgt aacgcatgat caagaagaag ctttagagtt atccgatagg
    22921 attattttaa tgaatgaggg taaaatcata caaaattcca acgcaaacaa tctttatctt
    22981 ttgccagaat ctcattttgt ggctagcttt ataggaaatt acaatatttt aagccctaaa
    23041 gagcttgata gcttgggttt aaaacacgat tttaaaaaag atatagcctt gcgtcctgaa
    23101 accatagaaa tttctaacga aggcttagag gctaagatca aagaaaaatc attactaggc
    23161 aatatcatac gctatagggt tagagtgcaa gaaattgaat ttaaggtaga tactttaaat
    23221 tttagcactc atagtactta tgaagcaggt gataaaatcg ctttaaaatt caatctttct
    23281 ttagcaaaag agttaaaatg aagcttgttt tatttgattt agatgatact ttaatacaag
    23341 gcgatagtgc taaactttgg cttaaatttt gtgttgaaaa aggtttttta cctcaagaat
    23401 atttagaaaa aatcgttttt tatcaaaaac aatatcaaga aaaaaagctt gatatggatg
    23461 aatttatgac tttttttctt caaagtgtta agggtaaaaa tgaagataga atttcatctt
    23521 tagtagatga atttataaaa atttatataa aaccttatga aaaagctaaa gaacttataa
    23581 tcaaatatca agatcaaagg tgtattataa tttcagctac ggctgaattt ttagttagaa
    23641 aaatcgcctc ttttttggga gtgagagaaa gcatagccat aaaatgcgag cgtgtgggcg
    23701 ataaatttag tggaaaagct tacggggttt atagctttaa agaaggtaag gttttaagac
    23761 ttaaagagta tttgggtaaa gattatgaaa aatggatgaa agattcttat ttttttagtg
    23821 attctatcaa tgatttacct ttactagagt ctgttagcaa agcctttgta tgtaatggtg
    23881 atgaaaaaat tttaaaaatt gcaaaagaga gaaaatatga aattttaact ttttaagcta
    23941 taagcgtgaa aattcacgct tattctaatt catatttttt aattaaagta tcataaaatc
    24001 catcagtttt tgcttcatct atgcctttgt taaatatttc aataatatct ttttgtttat
    24061 ttttatcaaa agcaaaacta aagccttctc ctccatctgt ttcttggtag aaacttacca
    24121 attctggatt ttcagctaaa aaacctttag cagtatcttg atcagctaca atagcatcga
    24181 ttttgttgtt ttttagtgct aaaacagcta tgtttaaatc tttattgctt tgtacttgtg
    24241 catttttgat agcttttgca gtattttctt gtaaagttcc tagttgaact cctatttttt
    24301 taccttctaa atcattcttt gtttgaagag agtcgttgtt ttttagctta agataaagat
    24361 ttttactcat atagtaaggt ttcgtaaaat caacactttg tcttctttca tcagttgcgc
    24421 tcatagctga ggcaatcata tcgattttgc cagcttttaa agcaggaatc aatccatcga
    24481 aattggtttc aacccaaaca attttaatac catttttttt ggcaatctct tcaaccaaat
    24541 cggtatcaaa acctgtaagt tttgagtttt ctttataatt aaaaggttta taatttggag
    24601 cagttccaac ttttaattct acacttgcat ttgattcttt atttttagaa tcactacaag
    24661 cacctaaaaa taa
//
LOCUS       DARGED010000009        24590 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.009, whole genome shotgun sequence.
ACCESSION   DARGED010000009 DARGED010000000
VERSION     DARGED010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24590
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.009"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(17..682)
                     /locus_tag="SFZ84_000310"
     CDS             complement(17..682)
                     /locus_tag="SFZ84_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202472.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(752..1930)
                     /gene="trmB"
                     /locus_tag="SFZ84_000311"
     CDS             complement(752..1930)
                     /gene="trmB"
                     /locus_tag="SFZ84_000311"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG8202473.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(1930..3165)
                     /locus_tag="SFZ84_000312"
     CDS             complement(1930..3165)
                     /locus_tag="SFZ84_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG8202474.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(3110..4078)
                     /locus_tag="SFZ84_000313"
     CDS             complement(3110..4078)
                     /locus_tag="SFZ84_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8202475.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            4156..5256
                     /locus_tag="SFZ84_000314"
     CDS             4156..5256
                     /locus_tag="SFZ84_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG8202476.1"
                     /translation="MFRLDRRILTHFDYIQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNSPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            5310..5386
                     /locus_tag="SFZ84_000315"
     tRNA            5310..5386
                     /locus_tag="SFZ84_000315"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5344..5346,aa:Ile,seq:cat)
     gene            complement(5495..5570)
                     /locus_tag="SFZ84_000316"
     tRNA            complement(5495..5570)
                     /locus_tag="SFZ84_000316"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5535..5537),aa:Phe,seq:gaa)
     gene            5710..7053
                     /locus_tag="SFZ84_000317"
     CDS             5710..7053
                     /locus_tag="SFZ84_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG8202477.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFTLEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGNLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            7064..7714
                     /locus_tag="SFZ84_000318"
     CDS             7064..7714
                     /locus_tag="SFZ84_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG8202478.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(7711..8382)
                     /locus_tag="SFZ84_000319"
     CDS             complement(7711..8382)
                     /locus_tag="SFZ84_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG8202479.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(8388..9014)
                     /gene="upp"
                     /locus_tag="SFZ84_000320"
     CDS             complement(8388..9014)
                     /gene="upp"
                     /locus_tag="SFZ84_000320"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG8202480.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAVLGTLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(9011..10246)
                     /locus_tag="SFZ84_000321"
     CDS             complement(9011..10246)
                     /locus_tag="SFZ84_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8202481.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSIEEIVNFCKSLAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(10248..11639)
                     /locus_tag="SFZ84_000322"
     CDS             complement(10248..11639)
                     /locus_tag="SFZ84_000322"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8202482.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDESKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            11704..12519
                     /gene="salC"
                     /locus_tag="SFZ84_000323"
     CDS             11704..12519
                     /gene="salC"
                     /locus_tag="SFZ84_000323"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG8202483.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDKNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSRDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(12556..13887)
                     /locus_tag="SFZ84_000324"
     CDS             complement(12556..13887)
                     /locus_tag="SFZ84_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG8202484.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAVKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(13889..14344)
                     /gene="accB"
                     /locus_tag="SFZ84_000325"
     CDS             complement(13889..14344)
                     /gene="accB"
                     /locus_tag="SFZ84_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG8202485.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            14492..15052
                     /locus_tag="SFZ84_000326"
     CDS             14492..15052
                     /locus_tag="SFZ84_000326"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG8202486.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFTLARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            15101..16105
                     /gene="pseB"
                     /locus_tag="SFZ84_000327"
     CDS             15101..16105
                     /gene="pseB"
                     /locus_tag="SFZ84_000327"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG8202487.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNASCMRYFIGDVRDKERLSTAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            16107..17237
                     /gene="pseC"
                     /locus_tag="SFZ84_000328"
     CDS             16107..17237
                     /gene="pseC"
                     /locus_tag="SFZ84_000328"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG8202488.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELITKIKLLKSHGIIKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKEYCG"
     gene            17230..18541
                     /locus_tag="SFZ84_000329"
                     /pseudo
     CDS             17230..18541
                     /locus_tag="SFZ84_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            18538..19328
                     /locus_tag="SFZ84_000330"
                     /pseudo
     CDS             18538..19328
                     /locus_tag="SFZ84_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858419.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
     gene            19349..20140
                     /gene="legH"
                     /locus_tag="SFZ84_000331"
     CDS             19349..20140
                     /gene="legH"
                     /locus_tag="SFZ84_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEG8202489.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            20171..20401
                     /locus_tag="SFZ84_000332"
     CDS             20171..20401
                     /locus_tag="SFZ84_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8202490.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSTLLEKIQTLKAEK"
     gene            20398..21291
                     /locus_tag="SFZ84_000333"
     CDS             20398..21291
                     /locus_tag="SFZ84_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8202491.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFPQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLKNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            21284..21700
                     /locus_tag="SFZ84_000334"
     CDS             21284..21700
                     /locus_tag="SFZ84_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEG8202492.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            21697..23259
                     /locus_tag="SFZ84_000335"
     CDS             21697..23259
                     /locus_tag="SFZ84_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8202493.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRADFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            23249..24310
                     /locus_tag="SFZ84_000336"
     CDS             23249..24310
                     /locus_tag="SFZ84_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG8202494.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMKKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            24310..24531
                     /locus_tag="SFZ84_000337"
     CDS             24310..24531
                     /locus_tag="SFZ84_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8202495.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSDLIDLAKLD"
BASE COUNT         8442 a         4041 c         3673 g         8434 t
ORIGIN      
        1 taaagataaa tgtgttttaa aaaatttcat tcatttttcc attttctata ttaaaacgac
       61 gataatccac tcttaaatta ctaggaattc tatgtgttac cactataaca caagttccta
      121 aaagctctct agcagacttt aaaagagtcc atataatatc agaagaatac tcgtccaaat
      181 ttcccgttgg ctcatcgcaa agcaaaagct ttggattatg agctaaagcc ctagccatag
      241 cgacgcgttg ttgctcacca ccgctaagtt gattaggcaa tttatctgct ttaaaagtta
      301 aatttacatg ctttaaaagc ttagtagctt gatcatggca tacttttttg ctataacctt
      361 taatcattaa aggcaacata acattttttt caacactata ttcttgtaca agtttataat
      421 cttgaaaaat aatccctatt ctttgacgta attttaaaag ttctaaattt ccaattttat
      481 tcatcaaaga tccacatact tcaagtttac cagaaatagg ttctaaatct ccataaaaag
      541 actttaaaag cgtactctta ccactcccac ttttacccgt aataaaaaca aaatcatcat
      601 ccttaaaagc aaaactcgct tctttaataa ctagttcatc ataacctaaa gtaagtttat
      661 ttgcttggat taaattaggc atcctttttc cttaatttcc ctttttaaat ttttaaatta
      721 tgctttattt ttgcttaatt ttcaagaaaa attatatttt aaactgaact tttaaaattt
      781 cttttaattc atttatcgct ttaatatttt cttgaatttt aaatggctct ttaaaagcaa
      841 aatcaatcgt tttatcaaga tgcaaataac aatgttcagg cttattaaaa gctccaaaag
      901 caacctttaa aagcaaattc tcatcttgtt tatagatgct ttcaaaatgc aagaaaaaat
      961 catctttttt tatagtaata tttttaaagt tctgctctat ttttttcaaa tcctctttag
     1021 aaaattcaac cgatgagaga ttaaattcat ttaactcata gtttttacac tcttggttaa
     1081 aattccacac ccaaagatca tatatatttt tttcttgctt tttccatcta tcttcatatt
     1141 tgcttgaaat ttctaaattt tcattttttc taaggctaaa ttttggagca ggaaaagtca
     1201 aaaattgctc taaagtaaaa ttaaaatact caaaactatc tgttctaagc tcaaaacgac
     1261 cattttgaac taaaacccta gcacattctt tgcaaaaatc tttcccaata actcgcctat
     1321 gaggcttttt atcccaagga acagggaaat gtaaaaaaat cttttcaact gattttgatt
     1381 ttaatacact caataacaat ctcgcatcac tttggattag caaaatatta tttacatttt
     1441 gtgctttagc aagtttagcc acttgagtta aagctgggtt gtaaatttcc acccctaaaa
     1501 ttaaaacatt tggattttct tttgcttgat aaagcaaatg tcttcctgat ccaaagccta
     1561 tttctatata aattttacct tgaagtctag ataaaagctc atcaaaatta tcaacgataa
     1621 atggtgtttt ttcaattaaa gcattatttt taagtccaaa agcttcattg ataatatcct
     1681 cacaaaaacc ttctttaaag atttttaaag ccttttgcaa ataacctatt ttagaaggtt
     1741 ttgtatgttt atcgccttta atcacaaaac cattttgtgc ttttttaatc tgcagaaaaa
     1801 aactctcttc ttgaaccttt gtataaataa gactaacatt atcattctta gcaagccaaa
     1861 gaaattcaac atcatcctta ctataaggca gatttatttc tttgatcttt ttacttttaa
     1921 aatttggcac tactgagccg ccttaacttt gcttgaaggt tctgaacgaa gcccggctga
     1981 atcaatagca ataacttcat aactatattc cacccctggc aaagctttta catcttttaa
     2041 tcgcttttct ttaatgcctt taaaaactgc attttgctcc ccgccatagc gtcttacttc
     2101 atactcaaca gctctagtat cattatcact ccattctaaa tttatccctt cgcttgtact
     2161 ttgagccaaa ataatactag gagccaaagg gttgcctaaa gttttacctt ctacaccatc
     2221 ttttggcata ggactttcaa gaccatcttt atccaccatt gttactttat aatacttgct
     2281 tttacctgct ccttctacta tatcctcata agaattttta tcagtctttg ccaaaacact
     2341 aaaaggaagg aagcttgagc tcgtagaata aactttataa taagaaaaat cttcatacgt
     2401 aggagcatcc caagttaaaa tgattttact agaaccatct gtgctagcac ttaaatgctc
     2461 aacttgagga ggtaaagcct tgcttgtaga acttacaact tgacttgacc cactctttat
     2521 cccattaaaa ctcacagcaa taattctata acttgaattt tcattaggct ttaaatcact
     2581 atcgatgtat tcagcgttta aacgattttt tacttctgca atttttttaa attctttatc
     2641 atcacctttg gttctttcaa taatataaga atcaacccta aaatcaggat gcggacgcca
     2701 aataagttta atacgattag gcaaattagt cacagcttga acaaaaggaa cagcttcaag
     2761 tcttggagct gtgctcactt ctataacctt gccatcttct gaaatttgtc cttgctcatt
     2821 aaagcttttc atcatataac gatacttagt accaggctct aatttagtat ctacataatg
     2881 agtttgaaac ttatctttaa tagtgcctac aagtttaaaa tcaggatttt catcactaga
     2941 acgatacaaa taaaatcctt taatattttc attatataaa ggctcccatt caaaagcaat
     3001 attactcata tcactaagac tttttaaact ttcaaccttt ggcaagcttt catttacagc
     3061 aggctcttta cttgaagcta gcgaattcat ttgcgaaaca ctacaagcgc taagcaaaag
     3121 agttaaaaaa ctcaagtaaa aactcaagcg aaatcttttc atcattctct cctaaattaa
     3181 tttgttcaaa cataatattt ttaaaatctt ccatcaaagg tgctttaaca aaaatttgtt
     3241 ctttggtttt tggatggata aaatacaaaa aataagcatg taacattatc ctacaatcat
     3301 acttaccctt ataaccatac aaactatcac ctaaaatata gcgatttaaa ctagccaaat
     3361 gcgctctaat ttgatgagtt cttcctgtaa aaagcttagc agccatcaaa gttaaatttt
     3421 cagtttttac tacatttata aaagctgatt ttgcgttttt actgaattta ttttccttat
     3481 ctatggctat ttttttaata gcattagaag gcgaacgcat taaaaatttt tctactataa
     3541 ttttatcttc ttttagtggc aaatcaatta acgcaaggta aattcttccc atgcttttat
     3601 ctgcaagctg ttcacttaat ttttgatggg tgaaattatt tttcgctatt agtatagctc
     3661 cgcttgtatc tttatctaat ctatggacaa gaccagctct tatctctcct cctaaatttg
     3721 ataaagtata ttttttttct attaaccaat ccaccaaagt ggcattttta acgctacttg
     3781 ctccatgaac gactaaattt gaaggtttat ttaaaacaag caagtcttca tcttcgtata
     3841 acacatcaat atcaaaatcc acttcaaact gaggttttat ctcattgcaa agctttaaac
     3901 ttgcaataga aataatatca ccatttttaa gcttaaatga atttttatct tgaattttat
     3961 cattaacctg tacacaatct ttttctataa gtaaagcaac ttgattgcga ctttggttta
     4021 attttttagc caaaaataca tcaagccttg aattttcatc tactaaaaaa gtttgcattt
     4081 tttccttaga ggttttgata aatttaaaat tttagtttat aattatagct ttatattacc
     4141 aactgaaggc aaattttgtt tagattagat agaagaattt taactcattt tgactatata
     4201 caacccattt tatttttacc cataattctt atttcatttt tcttaatctt tgaagctaat
     4261 ccttttttag cagaaaaaca gtttgtttat gcctgtgtgg gattgtttgc ttttatggtt
     4321 tttttcttct ttcctataag gaaatttatt tggattattc ctgttgctta ttggattaat
     4381 atttttttat tgctaagcgt agatattttt ggggttgaaa aattaggtgc taaaagatgg
     4441 cttgaaattc cttttactca ctttactata caaccttctg aaatttttaa acctagtttt
     4501 attttaatgc ttgcctatct tatttatcaa aattctcctc caaaaaatgg atacaaactt
     4561 aaacaattca tcaaacttag cttttacatc atcttgcctt ttttgctaat tgcaaaagaa
     4621 cctgatttag gaagtgctat ggttttacta cttgttggtt ttggagtgct ttttatcatg
     4681 ggagttcatt ataaaatttg gttaagtatt gttatagcta taagtgttag ctctcctatt
     4741 atttatacac atcttttaaa accctaccaa aagcaaagaa ttcatgattt tatttcagaa
     4801 aaaccaagtt atcaagtagc ccaatcaatg atagctattg gaaatggtgg tttaaccgga
     4861 aaatctcaag atgaagctac gcaaactcat tttaaatttt tacctatttc aactagtgat
     4921 tttattttcg cttacatgat agaaagattt ggatttattg ggggattgac attaattata
     4981 ttttatattt tacttatttt tcatctactt agtttaaatt ataaacttaa agatgattat
     5041 tttgctagag ttgctattaa ttgtgttgca ttatttattt ttatttatgc ggcagtaaat
     5101 atttcaatga ctataggttt tgcaccagta gttgggatcc ctttgccttt ttttagttat
     5161 ggtggaagtt cttttactat ttttatgatt ttttttggaa ttttacagca tttaatcact
     5221 tttagatatt tttggacgga tataaaggct aaataaaata tttttaagca ttaataagat
     5281 ataattttat cttttaattc aacttaggcg gatttatagc tcagttggtt agagcaaccg
     5341 gctcataacc ggttggtcgc aggttcgagt cctgctaaat ccaccattct acatataagc
     5401 tatagactct ttctttaaaa aataactttt agttctttaa atatttcaat cttatataaa
     5461 aaaagtatgt gatgtgattt tttgaaagat aaagtggtgg ttagaggcag aatcgaactg
     5521 ccgacacgca gattttcagt ctgctgctct accgactgag ctatccaacc acaatgtttg
     5581 ataaagtaaa aatgtaattg tatctttttt tctttaattt aagtttaaat acaaaaataa
     5641 aattttattt cccttaaagt tttaataaga tagaataccc gctttagatc attatcaaat
     5701 ggaaattttt tgaaacaatt tggactagat agacgaactt ttaaaatttt actagctggt
     5761 tatattatta ttgcattgtt tggggcttta ttgctacatt caagctgggc acatacaact
     5821 cctattgatt ttttggatgc cttttttaca agcacatctg ctgttagtat gacaggatta
     5881 gtagttaaga acactgcggt tgattttacc ttagcaggac aaattattat cttagctttg
     5941 gtgcaaattg gaggcttggg atatatgggt ataggtttat ttgtttatat actcatacgc
     6001 aaaaaagttg gttttagtgc aagaaattta ctaaaagagt ctttatttta tccatcaatg
     6061 gatggtttat ttaaattttt taaaaaggtt ttgctgttca tttttactat agaattgata
     6121 ggcgctatac ttctcaccat gcgttttacc cttgaaatga attttaagaa agctttatgg
     6181 tttggaattt ttcattctat tagcgctttt aataattctg gatttactat atttgaacat
     6241 ggacttatag cttataaaca tgatatagca attaatctta ttatcacttc tttgattatt
     6301 attggagggc ttggatattt tgttttggtt gaattatact tttttcaaag aaaaaaattg
     6361 caaaatttaa gcctacatac aaaaatggtt gttgttgcaa gtatttttct tattttctct
     6421 tcaacgctta ttatttttgc ttttgaatac tcaaatcctc aaactatagg acatttttca
     6481 ttttttgata aaattttaag ctcatatttt atcgctatta attaccgcac agcaggattt
     6541 aataccttag atatgggaca tttgcatgat gcaagcttat tttttggatc attgtttatg
     6601 gttattggtg gtgcaccagg tggaacagct gggggtatga aagtaacaac tgtaatggtt
     6661 ttattactct atgcttattg gagtatccgc gatggaagag ttagaatttt tggacatgaa
     6721 attccaagag aaactatatc taaagctttt attatagctg taggttcagc tgtttatata
     6781 gtaatagctg ttattttgct ttccttgcta gagtcaaaat ttgattttat agccttgctt
     6841 tttgaaactt cttcggcttt tgcaaccgta ggaatttcag taggaaatgg tggaaattta
     6901 tctttatgcg ctttgtttag tgatcctagc aaggtgatta tcatcattat gatgctaagt
     6961 ggtaggatag gtgtttttgc ttttttactc tcggtattca aacaagacaa agctattcat
     7021 ttaaaattcc ctgaaggaaa ggttaattta taaaggtaaa atcgtgaaaa atcttaatta
     7081 tggaatcata ggacttggaa aatttggatc agttgtagca gatgaactca ttgctggagg
     7141 tcatactgtt atcgttgcgg ataaagatga ggaagcttta aaaagtatac aaaatcctcc
     7201 aagctatgct tatattttag attctacaaa tatttcagcc ctaaaagaag caggctttca
     7261 tgatgttgaa gttgttattg ttagcatagg agaaaatgtt gaaaaatcaa tccttactct
     7321 tatggcgctt aaagatatag gtgttaaaaa tatcattgct aaagcaacct ctaatatcca
     7381 tggtcaaatt ctttctaagt taggtgcaac aaaggttatt tatcctgaaa aagaaagtgc
     7441 taaaagacta gtaaaagaat ttttaactaa agatgctgat tatgaagttt ttgatctttc
     7501 agcaaatact atacgagcta ttaagatcaa tatagatgaa aaattagcag gaaattcttt
     7561 aaaacatgta gcacaaaata tgaaagtgat ttcttataaa aaattaaata gcgactggga
     7621 aatactacct gatttagaaa ccacgacagt ttatagtgga gatgttgtaa ttctccttgg
     7681 aacagttaag gaacttagag aatttgaaca ctaagcaaga tttaaagcct tgcaagcctt
     7741 tacaaaacgc tttaaggctg ttttttcttt ggtagaaatt ttatgatata taacttcatc
     7801 taaataatat ctaacatctt ttatatctaa atcccttgtt ttggcatatt tttgaagtat
     7861 ataataggga attttaatct ttgtttttgg aaattttttc aaaatttgtt tatataaagc
     7921 ttttttttgc acacaagaaa atctagcaaa aacaaaaggc aatcctgttt tttcgtgcca
     7981 ttttgcacat aaatcgatat atttagaagg atcttttaga taaagcttta aagccttatc
     8041 acctataatt acttttccat cttgttttaa tactttagcc agagcgtttg aagttgctga
     8101 acttggatct ttggcatttg atgtattttt ttctactaat acacttaaaa ctcttttatt
     8161 agcacaaata cccaaatcta aatttttata tttttttcta gcactttcta tgcttgaaat
     8221 gatagctgca tcaattcttc tataaaataa atctttattt agcttacttg gaactccttt
     8281 tttatactcc atacttgctt tataaccatt aggtagggga tatttcttaa gatatatatg
     8341 taaaggtaaa agattaatat aatcaatttt tccaaaaatc atctctttta aagagtgtta
     8401 aacactctat ctcctgcatc tccaagccct gggataatat aacctttttc atttaaacct
     8461 tcatcaatac aagccacaaa aacttctaca tcatcatgca tttggctaaa ttttttcaaa
     8521 ccttgtggag cagcaagtat ggatataaat tttatttttt taactccttg gctttttaaa
     8581 aaattacaag cctctatagc agtcccacct gtagcaaaca taggatctat aacaatagca
     8641 gtgcgttttt ttgcatcttt gggaagtttt tgaaaataaa aatccgcctt taaagtttct
     8701 tcatttctca caaaccccaa aaacccaaca cttgcatcag gaatcatctt aaaaacactt
     8761 tcaagcgttc ctaatacagc tcttaaaata ggacaaatca taatcttttc atcaagtttt
     8821 tttactgtag ttttttgtat aggtgttgaa atttcaattt cttttaaaga aaaatcttta
     8881 ctcgcttcaa aaagcaaaaa agatgaaatt tcatcgatta acatacgaaa ttgaaagggc
     8941 tttgtctctt tagcccttaa aattcctaat ttatgttcga tcaatggatg attgatacaa
     9001 tgaatatttt tcattttaag ctttcaaaat aagctttctc atcaaaattt ttcaccttag
     9061 ccacaccatc ttttaccgca gctgctgcta cagctgtact tactgcagct tttactcttt
     9121 catcaaaagg ttttggtata acataatctc ttccaaattc taaagtgctt aaattataag
     9181 cttttttaac cgcatcgctt acaggaagtt ttgcaagatc tgctaatgct ttagcagccg
     9241 ctactttcat attttcagtg attttacttg cacgcacatc taaagcccca cggaaaataa
     9301 aaggaaaacc taaaacatta ttgatttgat ttggataatc acttcttcct gttcctacaa
     9361 tcgcatcttt tctaagtcta gctacatctt caggcatcac ttcaggaata ggatttgcca
     9421 aagcaaaaat cacaggatct tttgccatgc ttaaaaccat ttcatcatca agaatttttg
     9481 gtgcactaag tcctaggaaa acatcagctc cttttaaaac ttcttttaaa gtcttttcct
     9541 tagaatcaac agcaaattca agcttttgag gagttaaatc atttctatct ttagaaatca
     9601 ctcctttgct atctactaaa ataatatttt cgacccctaa atttctatac attttagcac
     9661 ttgctatacc tgcggcacct gcaccactta caactacttt gatgtcttta aattttttac
     9721 cacttatttc catagcattc ataagtcctg cagttgaaat aatagccgtt ccatgttgat
     9781 catcatgcat tacaggaatt cctaaatctt gcaaagccgc ttcaatttca aaacattttg
     9841 gcgcagcaat atcttctaaa ttgatcccgc ccacagttgg agccaaagac ttgcaaaaat
     9901 ttacaatctc ttctatacta tgaacatcaa tttctatatc ataagcattg acatttgcaa
     9961 attttttaaa caaacaagcc ttaccttcca taacaggttt tgaagcctgt gctcctatgt
    10021 ttccaagtcc taaaacagca gaaccatcac taactatagc tactaaatta gccttatttg
    10081 tataagtata agcaagctca ttatctttag cgatttcaag acaaggttct gcaactcctg
    10141 ggctatacgc caaagataga tcatggcttg tagccattgg cttacttggt acaatatcaa
    10201 ttttcccacc taaatggtat tttaaagctt cttcttttaa attcatttta ttttcctcta
    10261 acttttaaaa aattttctat tctttttttg cactcatcaa cctctaaaaa ttctaatact
    10321 tcaaaaatac taggacttac cgcactccct gttaaagcta tgcgtatagg ctgagccaaa
    10381 tcttttaact ttgcttcttt tttttctaaa aaatcatttg taaaatcttc aaaatcttta
    10441 cctgtttttt gatctttaag tgtattagca aatgcttgga gcaattctaa attatttttg
    10501 ttaataaatt tttgtactgc attttcatca taattttgcg gcgcattaac tatacttttt
    10561 gcaccattga taatatcatg caaggttttt gcacgctctc ttaataaatc aagtaaaaat
    10621 cctgcctttt cataaacaga taaatcaaag ccaagatcct taagctgacg gttaatctct
    10681 tcaaaaggca aagttttaat ataatgagcg ttaagccatt caagcttttt agcattataa
    10741 caagatgcgc ttttattaat atgataaggg tcaaaaagtt ttttcaaatc ttctaatgaa
    10801 aaaacctcat catcaccatg actccaacct aaacgcacaa gaaaattaag caaagcttga
    10861 ggtaaaattc ccatttcttt gtattccata acatcagttg ccccatgtct ttttgaaagc
    10921 tttttaccat cttctccatg tatcatagcc acatgaaaaa atttaggaat tttaaaaccc
    10981 aatgcctcat aaagcacaat ttgtttagga gtatttgaaa gatgatcatc tccgcgaatc
    11041 acatcactta cccccattaa agcatcatca ataacaacag taaaattata agttggagtt
    11101 ccatcacttc ttgcaatgat aaaatcatcc attatatcct ctgctttaaa tctcacctcg
    11161 cctttaaccc catcttcaaa aacaatctca ccgctttgag gtgctttaat acgcacaaca
    11221 ggctctatac cctgaggtgg cgtgcctgta aattctctat atcttccatc atatcttggg
    11281 cgctctttgg cagcttcttg cttggcgcgc aattcttcta attcttcttt actcatataa
    11341 caataatacg ctttactttc atctaaaagc tttttaacat attctttata aagatcaaaa
    11401 cgctctgatt ggtaagttac ttctccatca tgttctaaac cgcaccattt aaaagcttca
    11461 ataattgctt tagtagcttc tttggaattt ctttttaaat ccgtatcttc aatacgaagt
    11521 aaaaaatttc caccattttt tctagcgtat aaataattat aaagagctgt tctaagtcca
    11581 cctatgtgca aataccctgt tgggcttgga gcaaaacgcg ttgtaagttt ttcgtgcatt
    11641 ttttgccttt tcttaaattt ttattgatat aatgcgatat ttatacttaa ataaaggttt
    11701 gaaatgaaaa aaattttatt aagttttgca ttttttgcaa gtttagctag tgcaaatacc
    11761 attaatgcta tagctgtagt tgtagacaaa gagcctatca caacttatga tatagatcaa
    11821 actatgaaag cacttaaaat tgataaaaat aaagctttag gcgtactcat caatgaaaaa
    11881 atggaaattt cacaaatgaa acaactaggt attgtagtca atgatctaga gcttgatgat
    11941 gctataaata aaatgcttgc tcaaaacaaa acgactttaa atgctttcaa agcaaattta
    12001 aaatccaaaa atcaaagcta tgaacaattt cgtgcaaatt ttaaaaaaga cttagaaaaa
    12061 agaaagcttt atgaaaaaat cgcaagtatg gcaaaaactg attttagtga tgatggagca
    12121 aaaaaatttt tcgaacaaaa taaagataaa ttcacttttt atacacaaat taatgcaaat
    12181 atttatctat caaacaatcc tcaaacttta gaaaatatca aaaatacaaa aaaaacaatc
    12241 cttaaaccac aaaatgcatc tttaaacaca agtaatgccg atccaagact tttagggctt
    12301 ttatcacaaa ttcctgttgg aggcttttcc cctgttttaa atggaaaaaa tggctatgaa
    12361 ctctatgaag ttaaaagcag agatggggca caaactcctg aatatgaaca agttaaaaat
    12421 gaagttttaa acgcttatgt aagtgaacaa agacaaaatt ttatacagga ttattttgat
    12481 aaactccgct ctaaaatcaa tatagaatat ttaagataaa aattacaatt aaaatttccc
    12541 tttaataggg aaattttaat gtcttgcaag ataatttgta tcgtaattat tattaataaa
    12601 atcaggattt tccatcatag aaagatgaaa atctttggtt gtttttatcc cacttataag
    12661 caactcatct aaagctactt tcatttttgc aatagcttta ttgcgatctt ctgcccaaac
    12721 tacaagtttg cctatcatag aatcataata aggaggcacg ctatagtctt gataacaatg
    12781 actttccatt ctgacattgc gtcctgctgg tggaatgtat ttagtaatct tacctggact
    12841 tggcaagaaa gttttggaat cttcggctgt gattctacat tctatagaat gcccatttaa
    12901 tttaatactt tcttgagatg gtaaagcata accttctgct actttaatca tttgttctat
    12961 aatatcaatc ccacttacca tttcacttac acagtgttca acttgcaaac gcgtattcat
    13021 ttctataaaa taaaaatcca aatttttatc taccaaaaac tcaaaagttc ccgcaccttc
    13081 atagcctata gctttagccg ctttaacagc agtttcatga agcctagtac gtgttttttc
    13141 atcaagtaaa attgcagggg actcttctat aagtttttga tggcgtcttt gcatagaaca
    13201 atctctttcg cccacatgga tcacattacc aaaactatct cctataacct gcacttctat
    13261 atgacgtgga ttttgtatgt atttttccat atacatagtt ccatcaccaa atgctgtcat
    13321 agcctcactt tcagccgacc aatacgcttt ttcaagatct ttttcatttt caaccacacg
    13381 cataccacga ccaccaccac ctgcggctgc ttttaaaatc acaggatagc ctatttcttt
    13441 ggcaagtttt ttagctgctt cagctccggc taaagctcca tcacttcctg ggattacagg
    13501 tacgcctgct ctttgcatta cttgtttagc ttttgattta tcactcatta aattcatagc
    13561 ttctacagaa ggacctatga atttaatgtt atgtttagca caaatttcaa caaaattttg
    13621 attttcgctt aaaaatccat atcctggaaa aatcgcatct gcttcagcaa tttcagctgc
    13681 tgtaataata gctgggatat ttaaatagct ttcagaactt cttgctttgc ctatacaaat
    13741 gcttgcatca gcgtatttta aatacaaagc atctttatct gcttcagagt acacacaaat
    13801 tgctttttta cccatttctt taatcgttct taaagcacgc agtgctattt ctccacgatt
    13861 agcaattaat atgcttttaa tttccatttt ataatttctc caccgcaaat aaaggcattc
    13921 caaattctac aggctgacca tcagcaacta aaatttcagc gatcctacaa tcaaattccg
    13981 cttcaatttc attcatgatt ttcatcgctt cgataatagc tatagtatcg ccttttttaa
    14041 ccgtactacc tacttttaca aaaggtgctg cacctggact tggagcttga tagaaagttc
    14101 ctaccatagg gctatttata cttggtttgt ttgattttac actttgacta ggttgagctt
    14161 cgtttacaac gcttacattg ataggttgtg gagctggaac tggaggacaa acaggagctg
    14221 gaacatcgca gcacatatct ctttcaagtt ctatttcaaa accatcttgt tctttgatct
    14281 taattttact aatatttgct tcagcaaaaa ggtttactaa ctctttaatt tcttcttttg
    14341 tcataaaatt ctcctacaaa atttaagaac ttaaccttgt attatataaa aaaacttgaa
    14401 atttaacttt aaaaaagaaa aaaatcataa aaaatataga ttttttaggt tataatcctt
    14461 acaaacaatt acaaatatta aaaggttaaa aatgggctta aaagcggata attggataag
    14521 aaaaatggca ttagaacaca agatgatcga accattttgc gaagcaaata taggaaaagg
    14581 tgtggtaagc tatggacttt caagctatgg ttatgatata cgcgtaggac gtgagtttaa
    14641 aatttttacc aatgttaatt caactgtagt ggatccaaaa aatttcgtag aagaaaatgt
    14701 agtagatttt gaaggtgatg tatgtatagt tcctgcaaat tcttttaccc tagctagaac
    14761 tatagagtat tttaaaatgc ctgatgatgt cttagctatt tgtcttggca aaagcactta
    14821 tgcaagatgt ggtatcatcg tcaatgttac cccttttgaa ccaggttttg aaggacatat
    14881 tactatagaa atttcaaata ctacgccttt acctgcaaaa atttatgcta atgaaggcat
    14941 agcacaagtg ttgtttttac aaggtgatga aaaatgtgac accacttata aagataaaaa
    15001 aggcaagtat caagctcaaa cgggcataac cttgccaaga attttaaaat aggaacactt
    15061 gttgctttaa ttttaaaaaa cttaagcaaa ggaaggcaaa atgtttaaca aaaaaaatat
    15121 cttaatcaca ggcggaacag gctcttttgg aaaaacctat actaaggttt tgctagaaaa
    15181 ttataaacct aataaaatca tcatttattc tcgtgatgag cttaaacaat ttgaaatggc
    15241 aagcgttttt aacgcttctt gcatgcgtta tttcatagga gatgtaagag acaaagagcg
    15301 tttaagcact gctatgcgtg atgtggattt tgttatacat gctgctgcga tgaagcatgt
    15361 gcctattgct gaatataacc ctatggaatg tataaaaaca aacatccacg gcgcgcaaaa
    15421 tgtcatagat gcttgttttg aaaatggggt taaaaaatgt atcgctctta gtacggataa
    15481 ggcttgcaat cctgtaaatt tatacggtgc aaccaaactt gcaagcgata agctttttgt
    15541 cgctgcaaac aacatagcag gtaacaagca aacacgcttt ggtgttacaa gatatggcaa
    15601 tgttgtaggt tcaagaggtt cagtggtgcc tttctttaaa aaactcatca gcgaaggagc
    15661 taaagaactt cctatcaccg atacgagaat gactcgtttt tggatcagcc ttgaagatgg
    15721 agtaaaattt gtactgagta attttgaaag aatgcatgga ggagaaatct ttatccctaa
    15781 aattccttcg atgaaaatca ccgatctagc ccatgctcta gctcctaatt taagccataa
    15841 aatcataggc ataagagcag gagaaaaact acatgaaatc atgatttcaa gcgatgatag
    15901 tcatttaacc tatgaatttg aaaactacta tgctataagc ccgagtatta aatttgtaga
    15961 taaagataat gactttagta tcaatgccct aggcgaaaaa ggacaaaaag taaaagatgg
    16021 tttttcttat agctcggata ataatccttt atgggcaagc gaaaaagaac ttttagaaat
    16081 catcaatcac accgaaggtt tttaaaatgc ttacttattc tcatcaaaac atcgatcaaa
    16141 gcgatataga tgcgcttaca aaagctttaa aagatgaaat tttaacaggg ggtaaaaagg
    16201 tagatgaatt tgaagaagcc ctttgtgaat atgtgggcgt aaaacacgct tgtgtattaa
    16261 actcagccac ttcagccctt catcttgcct atacagcact aggcatcaaa gaaaaaatcg
    16321 ttttaaccac tcctttaacc ttcgctgcta cggctaatgc ggctttaata gctggagcta
    16381 aggtagagtt tatcgacatt aaaaacgatg gcaatattga tgaaaaaaaa ctagaagcaa
    16441 gacttttaaa agatagtaaa aatataggag ctattagcgt ggtggatttt gggggaaata
    16501 gcgttgaaat agatgaaatt tcaagccttg ctaaaaaata caatatccct ttaatcgatg
    16561 atgcaagcca tgctttaggt gccttatata aaagtgaaaa agtaggaaaa aaagccgatc
    16621 tttctatctt ttcttttcat cctgttaaac ccatcactac ttttgaaggc ggggctgtgg
    16681 tgagtgataa tgaagagctt atcaccaaaa tcaagctttt aaaaagccat ggtataatta
    16741 aaaaaaggct ttgggatagc gatatggtag aacttggcta taattaccgc ttaagcgatg
    16801 ttgcttgtgc tttagggata aaccagctta aaaaactcga tcacaatctt gaaaaaagag
    16861 aagaaatcgc aagtttttac gataaagaat ttgaaaaaaa tccttatttt tccacgataa
    16921 aaatcaaaaa ttataaaaaa agctcaagac atttataccc tatcttgctt tttcctgaat
    16981 tttattgtca aaaagaagaa ctttttgaaa gcttacttca tgcaggaatt ggcgtacagg
    17041 tacattataa accaacttat gaatttagtt tttataaaaa actcttagga gaaatcagac
    17101 tccaaaatgc ggataatttt tacaaagccg agcttagcat accttgtcat caagaaatga
    17161 atctaaagga tgcaaaattt gtaaaagata ctttatttag cattcttgaa aaagttaaaa
    17221 aggaatattg tggataagct agactttaga agtcaagatt ttagccaaac tggaaaggct
    17281 atgtatgaac tagcttgtga actttttccc atccctcgaa gtatcacagg gcaaggtttt
    17341 agagctagct tagaaatttt aaataaaact ctgggcgggg ggggggatac tcaaatttca
    17401 ctctataaaa agtggcacaa aggtttttga ctggatagtc cctgatgaat ggaacgccaa
    17461 agaagcctat atcatcactc cagaaggaga aaaaatttgt gattttaaaa agcataattt
    17521 acaccttcta aattatagcg aagctatcga taaagaaatc gaacttgaag aacttcaaaa
    17581 tcatctttac tccatagaag aaatgcccga tgctattcct tatgtaacga gttattacaa
    17641 aagacgttgg ggattttgtc tcacgcataa tgaaagaaaa aaactcaaaa aaggcaaata
    17701 caaagtctat atcaatgcga aacatgatga aaatggggtt ttggattatg ctgattttat
    17761 cctacctagt acgcaaaatt caaaagatga aattttaatt tcaacctatc tttgtcatcc
    17821 ttccatggca aataacgagc ttagtggccc tgtggtggct attttcctag caaaatggct
    17881 tttgagttta aaagaaagaa gatataatta ccgctttgtc atcatccctg aaaccatagg
    17941 ctctatagtc taccttagca aacatttaga acatttaaaa aaacatgtta aagcaggctt
    18001 tgtgctttct tgcttaggcg atgatcatac ttactcactc atacacacgc ccaaagaaaa
    18061 cactctaagc gataaagtcg ccctgcatac gctcaaaaat aaagaaaatt tcaaagcttt
    18121 tagttttcta gatcgtggaa gtgatgaaag acaatacaat gctccacttg taaatcttgg
    18181 catagtaggg gtatgtcgca caagatacgg tgactatgat ggatatcata actcaaaaga
    18241 cgatctcaat tttatctctg aaaaaggttt aatgggtgga cttcaaagta tgcaagaaat
    18301 gattttaaat ctagaaatca acgctgtata tgaaaacacc atagtatgcg aacccaatct
    18361 tggtaaaaga ggactatatc acacccttag cactgctaat gacattcctt tggcttgtaa
    18421 ttttttggct tactgtgatg gggaaaatga tatcatcgat atagctaata tcttaaatat
    18481 gcaagcttat gaatttaaag aacttttgga aaaaataaaa ttttatggac tggtaaaatg
    18541 aaatattttt tagaacacaa tggcaaaaaa tactccgata aggatttaat agatgctttt
    18601 tatcaactag gtataaaaag gggtgatatt ttatgcgtac atacagaact tatgaaattt
    18661 ggcaaagctt tgcttactaa aaatgatttt ttaaaaacct tacttgaatg cttttttaaa
    18721 gtgctaggca aggaaggcac tcttctaatg ccaaccttta cttatagttt ttgcaaaaat
    18781 gaagtttatg ataaagtgca ttctaaaggc aaagtgggag tgctgaatga attttttaga
    18841 actagcgggg gggggttagg cgaactagcg accctatttt ttcctttgct gtgaagggtg
    18901 ctaaagcgga tattttttta aaagaaaact caagctgttt tggaaaggat agtgtatatg
    18961 aaattttaac tagggaaggt gggaaattta tgcttttagg cttgaattat ggacacgccc
    19021 taacgcatta tgctgaagag agaaatacca gcttttgcag gtattttaag gaatttaagg
    19081 gctttgtgat tgacgagcta ggacaaaaaa gagaaaaaag gataaattat tatgtaagag
    19141 acttggaaaa agcctatgta tgcagccttg ataagataaa tgaaatcgtg cggcaaacaa
    19201 ggtattacaa aagcataaaa tttgcaggag attttctaga aagctatgat gctaaagaat
    19261 atgtcaaagc cataggcaac gcccttaagc aggataaatt tgccatatat gaaaagcttc
    19321 ttttatgaaa aatatttaaa ggtagtttat gaaatattta cttgaatttg aaaataaaaa
    19381 atactccact tacgacttca tagaaacttt ttacaaacta ggactacaaa aaggcgatac
    19441 cttgtgtgtg catactgaac tttttaattt cggttttccc ttgctttcta gaaatgaatt
    19501 tttacagact atattagatt gtttttttga agttataggc aaagaaggca ctttgatcat
    19561 gccaaccttt acttatagtt tttgcaaaaa tgaagtttat gacaaaataa attccaaaac
    19621 aaaaatggga gcattaaatg aatattttcg caaacaaaca ggagtaaaac gcacaaacga
    19681 tcctatattt tcttttgcta taaaaggagc aaaagaagaa ttatttttaa aagatacaac
    19741 aagttgtttt ggggaaaatt gtgtttatga ggttttaacc aaagagaatg gaaaatatat
    19801 gacatttgga ggtcaaggac acacactaac acattatgca gaagaacaat ttaatgtatt
    19861 ttacagatat cataaaattt tctctggaat tttaattgat gaaaacaata tatcatacaa
    19921 taaaaccatt agttattatg ttagaaaact tgacatatct tctgagccca atttaattaa
    19981 cattatcaat attgttaata atactaaaaa ttttaaaaaa aacaattttg caggagatca
    20041 tataaatatt tacaacgcta aagaatatat agaaatttta tggaaaaaat tagatataaa
    20101 ccaaacaatt ctaatagaaa attatgatac aatatattaa ttttcaacat tctcaagaaa
    20161 gtgatataca atggaaaaac aattttatga aattttagaa aatatacttg aaaccaaagt
    20221 agatgaaaat acaaatttaa gcatggaaaa ctgcaagaac tggacttctt tagctcatat
    20281 tgatatcatc atgagtttag aagaagaatt tgaaatcaaa tttaacaaag aagatttaag
    20341 tctcttaaaa tctcaaagca ctttactaga aaaaattcaa accctaaagg cagaaaaatg
    20401 aaagaaaata ttgaaaaatt atttcaagcc atcgctcaaa aaaatcctat ccattctaaa
    20461 tatcttaaaa aaattgaatt tccacaagaa gacgaagaag aatttgataa attaatttct
    20521 tattatattc aagatggtat cagtataaaa gaacaatgcg attgttattt attgatcctt
    20581 aacgatactt tagaagaaac aaaatttttc atagaaaatg gggcttatcg ttattctagc
    20641 tttgatgaag ttaaggataa agtttatttt aatgaaagtt atatgaaaca atacatgata
    20701 ggcctagctc tttcttcttt tgtttggata gctcatatta aagtgagaaa gtatttttcg
    20761 caatatttaa aaaattttac tccaaaaaca acttattttg aaataggccc tggccatgga
    20821 gaatattttg caagagcagt taaaagtggt aaattttccg ccttttatgg acttgatatc
    20881 tctccaacaa gttgcgaact tactcaaaaa atggtaaaac aacaagtagg gggattgatt
    20941 acaaaatgtg attttttatg tcaagatttt tttacttatg attttgataa aaaagctgat
    21001 ttgatagtga ttggagaagt gctagaacac gtagaaaaac ctcttgaatt ccttaaaaga
    21061 tctaaagagc ttcttagcga tggaggggaa atttttgcaa ctatccctat caatgctcct
    21121 gctattgatc atatttattt attttcccat cctgatgaag ttaaagattt gatagaaaaa
    21181 tcaggcttaa aatttaaagc ttatgaatgt tttatggcaa atgattatag tttggaaaaa
    21241 gcattgaaat ttaaaaatgc tatcactatg gcagtagttt taaatgctta atacaacact
    21301 caatttaccc cttcatcata taggcgtggc ttgtaaaaat ttagaaaaag aaagggaatg
    21361 tttttttaaa ctaggttttt ataaagaatc agaatttata gatgaaaaac aaggggtaag
    21421 aggcgaattt atcattcctt gtaatgaagc atttccacag tatagatttg aacttttgca
    21481 aaatttaaac gataaaggac cactagatag ctatttgaaa aataatacca aaatgtatca
    21541 tttagcctat gaaagtaaaa atatcgccca agatttaatt cttttggaac aacaaggagg
    21601 catttgtatt gttcctatta tgcaagcaag ctattttgct aaactttgtt ttatcatgat
    21661 gccaaatagg cttttaatcg aacttgtgga gctaaaatga atcttttttc accccattta
    21721 aaacgcaatg agcttataaa attcgccaaa gaattagact ttagcaaaag tcaagatctt
    21781 cttattaatg tccatagaaa tcatgctttt gaaggagtgc aaagtatcat tgctcctttt
    21841 ttacattttg ccaatttaag agctgatttt aatttcagct cttatgatga tagcttgagt
    21901 tttgataact ttaaagaagc tagtttagaa cttttatggc tagatttaac ccgctataaa
    21961 aataatgtgc aaaattttat agaagaaaga cttttagaac taagaaaaat ttcacaaaac
    22021 cctattttag ttcttagttt aggagaattt aaaacagata aaaaaatttt aaattgtgaa
    22081 atttttaaca tagaaaaact cataaaagag tattttgatg aagaagatat tttagactta
    22141 gctaaagaag aacttacagg ctctaagctt aataataaag ccttgatttt tttagcacaa
    22201 attttaggac ttagcctcat ccctgcactc gtaaaacccg ctcttaaagc tcttgtactt
    22261 gatcttgata ataccttgta tcaaggaatt ttaggtgaag agggtataga taatcttaat
    22321 ttaagtcctt tgcacaaaac cttacaagaa aaaattaaaa cttttaaaaa acaagggttt
    22381 ttacttgccc tagcttcaaa aaatgaagaa aaagacgcaa aaaaactttt tgaaataaga
    22441 aaagatttca tcttacaatg ggatgatttt gatgctagaa tgattaattg ggagccaaag
    22501 ggtgaaaata tcttaaaaat tgctaaaaaa tttaatataa atactaacgc tatgcttttt
    22561 atagatgata atatcgccga gcttgaaaat accaaattta caggcgttaa aacactttta
    22621 tgcgatgaaa atatacttta taaaatcaaa ctttttccta atcttttaaa actttcaaat
    22681 accaaagaag atcaaattcg tgccaaagat atagcagcca atgctttaag agaagagctt
    22741 aaaagcttaa gcgatgaaga atattttcaa aatcttgaaa tcagcttaaa ttttagcaaa
    22801 aatgatctgc aaaatatccc tcgcattagc gaacttttag gcaaaaccaa tcaatttatc
    22861 gctaattaca cacgcttaaa tcaagaaaaa gtcgcacaac acatgcaaaa agaactcatt
    22921 gtaagtgtga gtatgagtga taaattaagc gatagtggga ttatcgctat ttttgttttt
    22981 tcttgtaaag aaggaaattt atttatcgat gatctttgca tttcttgtag ggctttaggt
    23041 agaaaacttg aaactagaat gttttttaaa gcctttgaac tagctttaca tttctttgat
    23101 cttaaaaaca ataatgcaag gctttactat caaaaaggcg aaagaaatat gccatttttg
    23161 agctttttag aacaaatttc caaagaattt gaaaaaaact cagcccttat tccatttcaa
    23221 aatttaaact tcaaaggact tataatccat gaaaactaga tttgataaag ctaaaatttc
    23281 aggcatttgc gtaagcgtac ctgaacataa aatttgcatt gatgatgagt tagaaagcgt
    23341 tttttcaaac gatatcaaaa cccttaaaag aatgaaaaaa gtcataggtt taaacacgcg
    23401 ttatatttgc gatgaaaaca cttgcgtaag cgatcttgga aaacacgcag ccaatacact
    23461 tttacaaggt ttaaatatag ataaaaatag ccttgatgca ctcatcgtag taactcaaag
    23521 tcctgatttt ttcatgcctt ctacggcttg ttatttacac caacttttaa atttaagctc
    23581 caaaactgta gcttttgatt tagggcaagc ttgtgcaggg tatttatacg gcttatttgt
    23641 cgctcattct ttaatacaaa gtggcttagg taaaatttta ctcatttgtg gagatacttt
    23701 aagcaaattc atccacccta aaaatatgaa tttagcccct atttttggtg atggagtaag
    23761 tgcaacttta attgaaaaaa cggattttaa cgaagctttt tttgagcttg gaagcgatgg
    23821 aaaatatttt gataaactca tcattccaaa aggtgcgatg agaataccta aagcagatat
    23881 tttcaacgat gattcactca tgcaaactga ggagtttaga caattagaaa atctttatat
    23941 ggacggagca aatattttca atatggcttt ggaatgcgaa cctaaaagct ttaaagaaat
    24001 tttagaattt tctaaagtag atgaaaaaga cattgctttt catctttttc atcaatctaa
    24061 tgcgtatttg gttgattgta ttaaagaaga attaaaactt aatgatgata aagttcctaa
    24121 tttcatcatg aaaaaatacg ctaatttaag cgcttgttca ctacctgctc tactttgcga
    24181 actagatact ccaaaagaat ttaaagcgag tttaagtgct tttggtgcag ggcttagctg
    24241 gggaagtgcg gtgctaaatt tcaaagattt atacacaaaa gatattttaa tttacacaaa
    24301 ggagaaataa tgacaaaaac tgaattttta gaagagctta aagaagctat gcatagagat
    24361 gaagacttaa atgaagatat gctacttgat gatatagacg agtgggatag tttggctttt
    24421 gtatctgtga tggtgcttta taaaaatctt tttgctttaa aaatcacagc cgaggacttg
    24481 aaaaattgtc aaaaagtgag tgatttaatc gatttagcaa agcttgatta aaacctttaa
    24541 ggttttaatc ttttatctct aattcaaatt tatctcccgc atctttaaat
//
LOCUS       DARGED010000010        24412 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.010, whole genome shotgun sequence.
ACCESSION   DARGED010000010 DARGED010000000
VERSION     DARGED010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24412
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.010"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            162..1607
                     /locus_tag="SFZ84_000338"
     CDS             162..1607
                     /locus_tag="SFZ84_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG8202496.1"
                     /translation="MGNARGFLDFKRMDFKKIVPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLSYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTRVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(1608..2183)
                     /locus_tag="SFZ84_000339"
     CDS             complement(1608..2183)
                     /locus_tag="SFZ84_000339"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEG8202497.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(2216..2455)
                     /locus_tag="SFZ84_000340"
     CDS             complement(2216..2455)
                     /locus_tag="SFZ84_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG8202498.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            complement(2520..3167)
                     /locus_tag="SFZ84_000341"
     CDS             complement(2520..3167)
                     /locus_tag="SFZ84_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG8202499.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            3327..5003
                     /gene="ilvD"
                     /locus_tag="SFZ84_000342"
     CDS             3327..5003
                     /gene="ilvD"
                     /locus_tag="SFZ84_000342"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG8202500.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            complement(5015..5411)
                     /locus_tag="SFZ84_000343"
                     /pseudo
     CDS             complement(5015..5411)
                     /locus_tag="SFZ84_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(5503..6729)
                     /locus_tag="SFZ84_000344"
     CDS             complement(5503..6729)
                     /locus_tag="SFZ84_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG8202501.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMYEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            6806..7480
                     /gene="queC"
                     /locus_tag="SFZ84_000345"
     CDS             6806..7480
                     /gene="queC"
                     /locus_tag="SFZ84_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG8202502.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            complement(7501..9027)
                     /gene="dsbI"
                     /locus_tag="SFZ84_000346"
     CDS             complement(7501..9027)
                     /gene="dsbI"
                     /locus_tag="SFZ84_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG8202503.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSATIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(9039..9206)
                     /gene="dba"
                     /locus_tag="SFZ84_000347"
     CDS             complement(9039..9206)
                     /gene="dba"
                     /locus_tag="SFZ84_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG8202504.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            complement(9312..11090)
                     /locus_tag="SFZ84_000348"
     CDS             complement(9312..11090)
                     /locus_tag="SFZ84_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8202505.1"
                     /translation="MTNKKSSFLIKFIILSILVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            complement(11080..11994)
                     /locus_tag="SFZ84_000349"
     CDS             complement(11080..11994)
                     /locus_tag="SFZ84_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8202506.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            complement(12058..12936)
                     /locus_tag="SFZ84_000350"
     CDS             complement(12058..12936)
                     /locus_tag="SFZ84_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG8202507.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            complement(13048..13950)
                     /locus_tag="SFZ84_000351"
     CDS             complement(13048..13950)
                     /locus_tag="SFZ84_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8202508.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDLAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            14028..15356
                     /locus_tag="SFZ84_000352"
     CDS             14028..15356
                     /locus_tag="SFZ84_000352"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8202509.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            15372..17741
                     /locus_tag="SFZ84_000353"
     CDS             15372..17741
                     /locus_tag="SFZ84_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG8202510.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVAIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(17780..19165)
                     /locus_tag="SFZ84_000354"
     CDS             complement(17780..19165)
                     /locus_tag="SFZ84_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HEG8202511.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLTMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFVLQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEECEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAGVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(19285..19908)
                     /locus_tag="SFZ84_000355"
     CDS             complement(19285..19908)
                     /locus_tag="SFZ84_000355"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG8202512.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEGEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            20028..21659
                     /locus_tag="SFZ84_000356"
     CDS             20028..21659
                     /locus_tag="SFZ84_000356"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG8202513.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCAIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            21646..23217
                     /gene="recJ"
                     /locus_tag="SFZ84_000357"
     CDS             21646..23217
                     /gene="recJ"
                     /locus_tag="SFZ84_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG8202514.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGRDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            23271..24308
                     /locus_tag="SFZ84_000358"
     CDS             23271..24308
                     /locus_tag="SFZ84_000358"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG8202515.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
BASE COUNT         8268 a         3516 c         4312 g         8316 t
ORIGIN      
        1 ataaaaaatc aaaattatct tgtaatttat cttttgccaa tgatgaaaat tttttaaatt
       61 ttgaaaaaaa acaaattatt aaaagaaatg aagattttac taaatgggct agaaaatttt
      121 ttgtagattt tttgaaaatc acacaaaaat aaggagtaaa aatgggaaat gcaagaggtt
      181 ttttagactt taaaagaatg gattttaaaa aaattgttcc taaggaaagg gttttaaatt
      241 tcaaagaatt tactatacct ttggataaaa aagaacaaga aattcaaggt ggacgatgta
      301 tggattgtgg ggtagctttt tgtcatacgg gtgtgatgag cgaaggaaaa gatgtgggct
      361 gtcctttaaa caatctcatt cctgaatgga acgatcttgt ttatcgttct ttatggaaag
      421 aagcttatga aagacttgat cttaccaatc cttttcctga atttaccggt cgtgtttgcc
      481 ctgctccttg tgaggattct tgtgtgtgtg cgataaatgg tgttagtgtg agcataaaaa
      541 ataatgaatt atccattata gaaaatgctt ttaaggaaaa tttagtaaga gtaaataaac
      601 ctaagcaata caatggcaaa aaaatcgctg tcataggaag tgggcctgct gggcttgctt
      661 gtgccaatac tttaaattca ctaagttata aagtaagtgt ttttgaaaga agcgataaaa
      721 taggcggact tttgatgtat ggcatccctg atatgaagct tgataaaagt atagttcaaa
      781 gacgggtgga tttgcttaaa aaaagtggga ttgaatttaa agtgaatgaa aatatagaca
      841 gcaaagataa ggtttcaaaa cttctaaaag aatttgatgc tttggtgctt tgtacaggag
      901 caagtaagcc tatagatctt gatatagaag gtagaaagct aaaaggggtt gaatttgctc
      961 ttgatttttt aacgcaaaat accaaaacct tgttaaaaac aggcaagggt gcagatacgg
     1021 ccaaaggtaa aaatgtcttg gttataggaa gcggggatac aagtgtggat tgtattgctg
     1081 tggcgacaag acaaggggct aaatctatag tgcgttttga aagaagtcca aaaagacctt
     1141 tgcaaagaag ccaaaacaat ccttggcctt taaaagctga catttttact actgattatg
     1201 gtttagaaga agccattgct gtatatggca aagatcctag ggaatatcaa aaaatgacaa
     1261 agaaattttt aggaaaaact cgtgtagaag gtgttgaagc aaatgattta aaacgcgagt
     1321 ttaaagaagg caaagctata aatgtcgaaa tttcaaattc taaaaaaact tataaagcag
     1381 atttagtgct tttagctatg ggttttagcg ggtgcgaaga agctatctct aaaaattttg
     1441 gagtgaaatt agatgagaaa aacaacataa gcacagaaaa tttccaaacc actcataaaa
     1501 aaatctttgc ttgtggagat gctagaaaag gacaatcttt agttgtttgg gctataaaag
     1561 atggtataga atgtgctttg agtttgcatc aaaatttagc aaaataatca taaaagttta
     1621 aaactttttc ggtggagttt gcaaattcca aatttagcta taaattcttt atgagctttt
     1681 gtgccatagg ctttgttttt ttcaaattca taacaaggaa agtctttagc taagaaattc
     1741 atcaccctat ctttactaac ttttgcgagt atgctagctg cacttacttg caaaatgcta
     1801 gtgtcggctt tgatttgtgt ttttatcccg tttataccta ggttggtgtt tccatcatat
     1861 aagaagttat tttctgtttt aaaatgcttt tttataagtt ttaagccttt ttttaaacaa
     1921 gtgcttaagc ctagtgcgtc gatttgttct gaagaaaaag caagtatgag atagtttgaa
     1981 tttttgatga tgatttcata aagttcttcg cgtttttttt cgcttagttt tttagaatca
     2041 cacaacccat caagttgttt gttcagtttg caagctgcca tcatcatagg acctgctaaa
     2101 gcaccgcgtc ctgcttcatc aataccgatt aaatttatat caaattcgtt taaaagttct
     2161 tttgtgtcaa ataaagtttt caaatttttc taaaaagaag ggcaaaaatg cccttttatt
     2221 ctactgtgat atcatttttg attttttcaa aaagcttatc acctatgcct ttaacttttt
     2281 taagatcatc aatacttgta aaatttgctt ctttacggta ttctaaaatc gctttagcct
     2341 tagcttcgcc aataccattt aaacttttta attcttttag cgttgcagtg ttgatattta
     2401 cagcaccaaa gagaaaagcc gttaaagcaa aaaataaaaa tagtaatttt ttcattttct
     2461 tatcctttta ttaaaaaata attataatat tatcttaaaa aggataagaa tttcttaact
     2521 taacccaaaa attcgcgttt aaaatactct tttggtgctt tacataaagg acaggctgct
     2581 ggagcttttt tgccacgatg tatatgtccg catacttcac aaacccataa ttcttctact
     2641 tcgctattaa aaaattcttc ttcttcaagc atttttttaa gcgctagata ttctctttcg
     2701 tgttcgattt ctactttacc aatagctgta aataatcttg ctatagcctt tttaccttca
     2761 tcttcagcaa tttttgcaaa atttggatac atagttgtgt gctcatagtt ttcaccttct
     2821 gcagcagtta ctaggttttt tgtagttact tctaaaggtt ttccatcaac gatttcatga
     2881 taagctttaa attctgctct tgcatgccat ttttcatttt cagctgcttc tctaaaatgt
     2941 ctagcaaccg catgccaacc ttcttcttca gctacatcag caaataaatc gtatttgttt
     3001 ctcgccatag attcgcccgc aaaagctttc atcaaattta ctgcagttaa atctgtagtg
     3061 atacatttca tttcttcacc acaacaacta agcttacctc cacctacatt ttgaacttct
     3121 acttcattac cacatttttg gcatttatag gtttcatatt gtctcatttt gactcctttt
     3181 ttgattatca aaaagcattg tattataaaa aaatattttt gtcaattaat aatttttatc
     3241 atttatgaaa atgtatatca aaataaattt cacaaaaatt aagctttgct aaatataatt
     3301 ttaaaaaatt attatcagga gttacaatga gaagcgatgc gataaaaaaa ggacatttaa
     3361 aagcacctaa tcgttcttta cttcgtgctt gtggtttgaa agatgaagat tttgacaaac
     3421 cttttatagg tgtagcaaat agctatatag atataatccc agggcattat tttttaaatg
     3481 attatgctaa aatcattaaa gatgagatac gcaaaaatgg ttgtgtgcct tttgagttta
     3541 ataccatagg tgtagatgat ggtatagcta tgggacatga aggtatgctt tattctttac
     3601 caagtcgtga aatcatcgca aattccattg aaacagtgat gaatgctcat caacttgatg
     3661 ctttaatctg catcccaaac tgcgataaaa tcactcctgg tatgttaatg ggagctttaa
     3721 gagtaaatgt tccaaccatt tttgtaagtg gtgggcctat ggcttcaggg gtaactaaaa
     3781 aaggagaaaa gattagtctt agctctgttt ttgaagctgt aggggcttat gaagccaaaa
     3841 aaattagcga agaagaattt aaagatatag aatgttcagc ctgtccaagt ggtggatctt
     3901 gctcgggaat gtttacagca aattctatga ataccttatg cgaagctatg ggtatagcac
     3961 tagaaggtaa tggaaccatc ttagctttaa gcaaagaaag agaagagctt ttaagaaaag
     4021 cagcgcgtcg tatttgtgaa atcgccttag atgagcgttt taaaattcgc aatatcatca
     4081 ctcaaaaagc cgtgcgtaat gctatggtag tagatatggc aatgggtgga agtagcaata
     4141 ctgttttaca catgcttgcc atttcgcgtg aagcaggggt ggcactagat attaaagatt
     4201 taaatttcat ctcaagcaaa gttgcacaca tagcaaaaat agccccgtcg ctaaatagtg
     4261 tttatatgga tgatatccac aaagcaggcg gtgtgagtgc agttatggct gaaatttcaa
     4321 gcagacaagg acatatttta gaacttgatg cactgaccat tacaggagaa agtctcaaag
     4381 aacgcttaaa aaatgccaaa atcaaagatg aaaatatcat tcgtaaagta gataatgctt
     4441 actcaaaagt aggtgggctt gccattttgt ttggaaattt agccgagcaa ggttgcgtta
     4501 taaaaaccgc aggaataatc ggagaaagaa aatttaaagg caaagctgtt tgttttaact
     4561 ctcaagatga agctataaaa ggcattatca aaggcaaggt gcaaaaagga aatgtttgtg
     4621 taatacgcta tgaaggtcca aaagggggtc ctggtatgca agaaatgtta agtcctactt
     4681 cacttttaat gggtatgggt ttaggtgctg atgtagcttt aatcaccgat ggtcgtttta
     4741 gcggggctac aaggggttta agcgttggtc atatttcccc tgaagcagct gaaggtggtc
     4801 ttataggact tttaaaagat ggagatgaaa tagaaattga tgtagatgct tatactatcc
     4861 atgcaaatgt aagtgaagaa gaaattgcta aacgtaaaaa agaatttgca ttgcctcaaa
     4921 aagaggtgtc ttcaagatgg cttagaatgt atcaaaaact tgttagcaat gctagtaaag
     4981 gtgcggtttt agatatggaa tgaaaggttt cctttcattc ttctatttct ttggttatac
     5041 gatttcttat atctctacga actatttcca tgccccacag ccaaacaata tggccaaaaa
     5101 tttcagacag gtgttcatca aaaggaattt cagaaagtgg tggaacttct gcaattaaag
     5161 gcattacaat aacatgggca aaaagataaa caaaaaatcc aaaaactgca cctttcagta
     5221 ggtaagccta gttgttctag aaaaatttta ggtggagtaa cacgttctaa agcatctgct
     5281 ggtcaaaaaa cattgggatt tcttggagga aaaggtactt cccaacccca tttaacaata
     5341 gctccgaaaa tacccgctaa tatacctata aaaaaggcta aagtatagcg cttttgaaag
     5401 tattttttca taataactcc tttatatttt atacaaaata aaatttgaaa ttataatatt
     5461 tttatttaaa acatattgaa aatagtagta taaaaatctt atttaaattt taaaatactc
     5521 tcttaaactt tcacaaattt caaaaaaatt caccccatct atggtaggat tttctttaaa
     5581 aaactcatac attcctaaaa aaccactttc aagttcttta gactttacac cataacttat
     5641 actaagtcct gcttctatat aagcagcaat tttatcgcag tatttaagcg ccttaccatc
     5701 tatagcacca aattcatttt cattaaaaga gcttaaactt ccgctgcaaa gctcgatttt
     5761 agcattttta taagtgcgat tttcaaactc attttttaca aaatttgact caccgtttct
     5821 accttctcta atgcctaaaa tataagaaaa ctcagccctt aaaccctcag gtacaaaggg
     5881 taaaattctt tcattaataa gtttcatttc ataatcattt atgatatcat gaagtccatc
     5941 aatgccgtat tttacagggc tgataatatc acgtgttaaa gactctggca aatcatgaaa
     6001 caaagcacaa taaaaattat tctcaagtct tttatcgcaa gccttgattt ttagtgagta
     6061 aaaatatcct aaaatcgcca ccacaagcat atgtcctaaa accgcggttt ctggtatgcg
     6121 tggagtttga gcccaacgtt tttgaaagcg aagtcttccg ctaagatcaa taattttggc
     6181 tattttttga tttaaagcaa tttttctagc tcctataagc tcatagtaat cttctaattc
     6241 ttcttcaact ttgtttttaa tctcatcaat atcatttaaa aaagctgagg tttgataaac
     6301 tatgttaaat tcccatcttg tagcaaaata tgaagctgct tttaagataa gtctttcttt
     6361 agcataagca ttaccgttta aatacgcttc aaaacgcttt agaaattccc catcttctat
     6421 atcttctatc ataggttcga ttttgcttaa aacccaagca ttaacttcag cttttttttg
     6481 acgcacgatt tcatgataca catcagggcg tatatcagtt accacaacac gacttaaaaa
     6541 ctcaaaaatt cccccttcta taatcactct catatccaca tctttttcca ttttagcgat
     6601 aaaatatgcg atgatgaatt tatgagcttg tttgtcaagt tcaaccaaat ttgccattct
     6661 tggataatca ttccaacgac tgatagaagc ggctttaaaa atgtgttcta tgagttttat
     6721 gtttatcatg cttttgcctt ttttgcaatt taaatttaaa aattttcgtt aaaattgtga
     6781 aattatagca aatttaagga taaaaatgag taaaaaagca ctttgtatca taagtggcgg
     6841 tatggatagt actttgtgtg cttatctggc caaaaaagaa ggttatgaaa tcatcgcttt
     6901 gcattttgac tatgaacaac gcactcaaga aaaagaaaaa gaatgtttta agcaaatttg
     6961 caaggcttta aaagtagaaa aatcttatat tttagatgtg agttttatca aagatatagg
     7021 gggcaatgcc ttaaccgata aaagtataga catccctaaa aatgagcttt gtacaagcga
     7081 tactccacct atcacttatg tgccttttcg caatggaatt ttcttaagta tagcaggatc
     7141 tttggctgaa aaggaaaatt gtgagagtat ttttataggg gtggtagaag aagatggcag
     7201 tggttatcct gactgtactg atgagtttat acaaaaggca caagaattta tcaatgaagg
     7261 tacgagtaag aatttcaaag tttgtataaa aactccgctt gttagactaa acaaagctaa
     7321 aattgtagaa ctagccttaa aagaaaatgt acctttagaa cttacttggt cttgttatga
     7381 gagtgaagat gaagcttgtg gggagtgcga tagttgtttg cttcgtttaa gaggttttga
     7441 aaaagcagga tttaaagata agattaaata taagtcctag ttttcactag gacttaaagc
     7501 ttagtttaaa gtataaagct tgtttgctcc atcttgataa gaaagaatat tgatttttcc
     7561 atctttaaag aaaatgcttc tagcattagt gatagagctt gggaaagcga tagttttcac
     7621 tacttcttct ttgactggat caattacggc aatcacattg tgatttttgc taagtgcata
     7681 aatttcccca tctttaaaag tcatagaagt tacataaaga tcgcctaaag ttttaccttc
     7741 tttaagattt gcttttggag taaattctcc tgaaagaaca cgatctttta aagaaacttt
     7801 agagattaca aaagttttag cgtctttgtt gtttggaaca gttgcaagat aaagataatt
     7861 tccatctgta gtcatacttg ccacatggtt aaattttgct cttacggtat caagtcttcc
     7921 gcgacctaaa ctttcgcctt gacctttaaa tttatcattg ccttttacaa agtcagcgta
     7981 ttgtttagcg atatcttctt cacttgcatt aggatttttt gcaaatctta agaaagattt
     8041 gtttgagccc ataagaatga atttatcgtt catataaggt atgataccga tgattggatc
     8101 aatagtagct gaaaaataag gatcaagttc aaaaccttct ttaacgctaa aattattatc
     8161 taagaaagct acatcccatt tagaacttgc tacaaattcg ttattgatat aatcaagagt
     8221 attgatggct ttgtcaaaat ttatggtttg ttcatttgtg attttaagct catcattgat
     8281 ttttgcaaat ggagcattgt tgatatcatt atcaaatttt atgccaagtt tttcacttgc
     8341 aggtgcaaaa gcataatcag gagctttaac atcgcgtttt cctaagaaag aaatattttg
     8401 ccataaacca ttccaacctt ctttactcca aatgatgtat tttggattta aactaaatct
     8461 tacaggatcg ccttgtccta cataaggagg aatacctgtg ctaacaaagg cttggaaaac
     8521 atttgatgct acgatgatag cactgattaa aactgctgca aagctaaatt tagtatattt
     8581 tctaaacttt tctccattta gttcagcttc aaaagcatta aatttaggag caaaagcaaa
     8641 aatcacacct aagagcaata caacagccca aaatactact tcagcccaaa aataagtatg
     8701 gataccaaaa actgctaaac caaaaccttg atctaaatct ctatgagcgt gattaccata
     8761 gtgagcaaaa gattgataaa gccctactgc tgtcatgatt aaaagagcag caaggtattt
     8821 acctttcata ccataacgaa caatgaaaag cgccattaca ccgataaaga tcattgcttc
     8881 tctttgtccc cagcaaagcg tgcaaggact atcgcccaac atataaccaa atatcaaatt
     8941 tgcaatacct acaggcaaga gtataatcaa aaagcctgct aaacacatta gtgtgtagaa
     9001 attttttgtt ttattgattt cgttcattta gcccttcctt acagattcat tattgttaat
     9061 agtgcgcctg ttttgtggcc aacatagaaa aaaaccatta aaagccaagc taccattacc
     9121 aaaccaaaag ccaaattttc tttttctggt tttttgataa tcagtatcaa ggcgattaaa
     9181 actaataaaa gttcaagaaa ctccatagta tctcctttga aataaaaact gctaatttta
     9241 cttgaaaaac ataaattaaa aataaaattt ttattgaaat ttcacgttaa gttaaattaa
     9301 cgtgaaaaaa gttactgaaa gctacttaat ttttcggaga gtttagaggc accatttaga
     9361 acattttgag agatattatt gatttcacat gataaatctt taacagaatt tgcaagttcg
     9421 ttaactttat ctatatttgt tcctaagata agcattttat cttttacttc catgctttta
     9481 tctttcatgg tttgggttga ttctatagag ctttccaatt tatgcataga atttacaagt
     9541 tcttgttgta aatcattggt ttttgaagag gtttctttca tagaatcatg gataagatcc
     9601 attaaggctt tgttgtcatt gatttgttgg actatagtat taacagtagc attgatgttt
     9661 aaaagagatt tacttgtttt atcagcaagc tgtccaactt catcggctac aacagcaaat
     9721 ccacgcccat gttcgcctgc tcttgcagct tcgatagctg catttagggc aagtaaatta
     9781 gtttgatcag ctatgtcttt aatggagttt gtgatttcta taatattatc cgcactttgg
     9841 gttagattgt ccatattggc tactatattt tgttcttttt cattgttttc atttattaaa
     9901 tttacaagtt cagatagagt aagttctact ttatccatta gtatgtgcat atcttgcata
     9961 ttttctatac tttcttgtgc taaatttccc gcaagattga tatgatcatc taaaacatga
    10021 gtgatttctt taactccttg aatttgttca tgttgcgaat tagagctgtt ttcaagcatc
    10081 atagagttgt ttttgagttt ttgtgaattt tgatgacttg atttagcatt ttctatggct
    10141 tctatgattg agttttgaac ggtggaaata aatgaattaa tatattgagc actttgtcca
    10201 agctcacttt ttggatctat atttaaacga gagtgtagat tggcttcttt gctagctaaa
    10261 ttagcgctta gtttttctaa agtatgaatt ggcatgatga ctttttttag tgttaataaa
    10321 ataaaaaata caaataatac aagagtgatt ccaaatactg ctaaagcgat ataaaattta
    10381 aataaattag attgttctat agtattttgg gtaaaagtgt taagttgttt taactctttc
    10441 atgagagaat tattctcata aatagaagaa ttatcttgca taatagaaat ttgcttgaca
    10501 atcattttat agtgttttaa aaaaagttgt aaattttcac tttttgtatc atttttgatt
    10561 tctttcataa gattgttgag ttgatttagt gttgtttttt gtaaaatatt ttcagttgaa
    10621 agaacgctta acatagaact cattgtttta tagttgtttt tatttgtttc atggttttgt
    10681 tccaattctt caaaataatt tttagctagt tcaaataaat aaagttttga atttactgct
    10741 atggaatttg cggatttaaa ataattaagc tggattagtt tggcattaaa aatttcttct
    10801 gctttgttta tgtcaatccc aaaagtttta agttttgtaa agttttcttg catttttttt
    10861 attgcttgca cacttggatc gtagttgata aaattaaaac tattttgaaa aatagaattg
    10921 attttttcat ctgaaatttc tagttgctga actatgttta tcaagtcttt gttattttta
    10981 gatgaagaat agttattaaa aataatagcc aataaaacaa gaatgaaagt caaaactagt
    11041 atagataaga taataaattt tatcaaaaat gaactttttt tatttgtcat gatattctcc
    11101 tgttaagctt tctaagaatg caactatatt gtcaactgtt tcttgatcta aaaattttcc
    11161 tagttgatag taagccataa actgaacaca agcatctaaa gtaggtatag aaccatcatg
    11221 aaaataaggc gcggttttgg ctatatttct aagactagga accttaaata ccattttatc
    11281 agcttctctt tttgtgattt cataacgccc taaatcttct tggtttgggt attcttcaaa
    11341 aataccgatt ttttgaaaca tattcccgcc tatattttga ccttgatgac aagagatgca
    11401 gccattagct ttaaaatctt cgtaaccttt tttagcttga gttgaaatag cattttgatc
    11461 cccgctaaga tagcgatcaa aaggagaatt tggggtgatc aaggtttttt caaattcggc
    11521 gattgcaaga gctatgtttt ctaccgtaac ttctccataa agttttttaa aagtttttac
    11581 ataattttca tttgaattaa ctttttgtaa aagaagttca ggacttagcc ccatttcttt
    11641 tggattgaaa aaaggtccca tagcttgttc tgttaaatct ttagctctgc cattccaaaa
    11701 ttgcacaaaa ttaaacacag aattaaaggt tgtaggagtg ttaaagggtt tatcgagttg
    11761 attatcaact cctattgaaa attcaagccc atcaacaccg tgttgatcaa gcctatggca
    11821 agtattgcat gaaacttttc catctttaga taaactttta tccatataaa gactttttcc
    11881 aagtttagct ttttctttat cataagagat ggaatttgga ataggggtta tcatatctac
    11941 tgcaaagact atatttgcat aagataaaca taaaatcatt attatttttt tcatgataaa
    12001 tttctgcctt aatttaagtt tttaaaatgc cattatagta taattttagt aaattattta
    12061 ataattgata ttttttattt tattacaaag ttctcctaaa ttttctataa cgcaacgtac
    12121 tttatctcct gattttaaaa aagtaggtgg atttaacccc atacctactc cactaggagt
    12181 tcccatagat ataatacttc cagcttttaa aagcatgcct gcactaagtt cttctaagac
    12241 ataagcaata tcaaaaataa acaattgagt gttagagttt tggcgtagtt catcattgac
    12301 atagctttga agttggagtt taggaggata agaaatttca tctacgcttg tgatataagg
    12361 tcccattata gtgctacctt caagactttt tgctcggtag aattgtttgt ggcgtttttg
    12421 aagttcgcga gctgaaattt cattgataat agtatagcca aagatataat cttttgcatc
    12481 tttagctttg attttataag catctttact taaaataaat gcaagctcac attcataatc
    12541 aagctgagaa gttacatctg catgtaaagg tatatcgcca aaaggtggcg tagcttgatt
    12601 gcaacgtttt ccaaaatata caggatattc tctttcttca aatttttcac ccttaaattt
    12661 ggcagattct ttggcatgat ctaaaaaatt aatcccaaga catataatat cttgacgagg
    12721 ttctataata ggggctagat aattttcttg tggaatttca taggctattt tagaatccaa
    12781 gtctgtaagt ttgtgtttaa atttatcaaa atggataata aattcattca tatcgttagt
    12841 ttcaatgcca agatcatcaa aacttacaat ttttccacta gaatttagta ctcctagatt
    12901 gggtttttga ccctgtataa aattaacaaa tttcatttgg aaaatctcgc ttttttattt
    12961 aattatactt aaagttttag caagaattat tttttgtttt aaaatttggt aaaaaagtga
    13021 ttgattgtag cgtagtgaaa catcatttta ttttatagaa ttgttgaaaa tttcttttat
    13081 gtttattttt gagttgatat taaaattttg atttttatat tgaaatttca aacgataaga
    13141 atgcaaacac aaacgcaagg cacctgtaag ttttaagcgt tctttggggg ttaatttttc
    13201 atctaaaata ctttcgattt gttctttgct aagcccataa agtggatcgc ctaaaatggt
    13261 atgattttta tagtgtaaat gcactcttat ttggtgttgt ctgcctgtta agggtttgca
    13321 gagtaaaaga gtagcgttga ttttaggaaa gtactctaaa atttcaaact cagtgatagc
    13381 ttgttttcct tccttacaaa tttgcatcct tgtttttaca tcatcgtagt ttttggctaa
    13441 atttatggct ttatcaatta taaaattttc ttctattttt ccgttagcta gagcaaggta
    13501 ttctttttga accagttttt tttcaaacaa agctttaaga tcaatttgag cttttttatt
    13561 tttggctaca agtataagtc cgctcgtttc tttatcaagt ctgtgtgcta cgcaagcttc
    13621 ttttccccaa agatgccaaa tttcatcact aagactgtat ttacaatgtc taccatttgg
    13681 atgacttaag atcccacttt ctttttcaag tatggccaag tcttcatttt caaagacaat
    13741 ttctactcct ttgggattgt tttcatagac tataagctct actaaaccat ttaaaatttc
    13801 attcttttct tctactaaaa ttccatcgca aaaaagtctt tttttgtcta tgagtttttg
    13861 tgcttcattt atgctaattt ttaaattttc cataaggact tgaaatgcct tttttccatt
    13921 atttgagagt tttattttta tgtaagccat ttaataactt tcttaggata atttgatata
    13981 atttctgttt tttaaaatat aaaattatag ctaaaaaggt ttcaaagatg gttgaaagat
    14041 atagcagaga aatcatggct aaaaaatggg acatgcaagc aaaatacgat gcgtggttaa
    14101 aagtagaatt agccgctgta aaagcttgga ataaactcgg tctcattaat gacacagact
    14161 gcgaaaaaat tcttaaaaat gcaaaatttg atattgcaag aatagacgaa atagaaaaaa
    14221 ccacaaaaca cgatgttatc gcttttctta caagtgtaag tgaaagtttg ggagaagaga
    14281 gtcgttttgt gcattatgca atgacaagtt ctgattgtat agatacggct gttgctttac
    14341 agataaaaga gagtttggag cttattttag aagatgtttc tttgctttta gaagtgatca
    14401 aaaagcgtgc tttggagcat aaaaatacct taatggtagg aagaagtcat ggaattcatg
    14461 gagagcctat cacttttggt ttagtgttag ctatttggta tgatgaaatt ttgcatgcaa
    14521 aagagctttt agaacatgca aaagaagtga taagctatgg aaaaatcagt ggtgcaatgg
    14581 gaaattttgc tcatgctcct ttagaatttg aagaagaagt ttgtaaaaat ttaggtctta
    14641 aagctgcccc tgtttcaaat caagtgatcc aaagagatcg ttatgctcaa gttatttctg
    14701 ctattgcaat tttagcttca agttgtgagc aaatcgctgt agcgataaga cattttcaaa
    14761 gaactgaagt ttatgaggct gaagagtatt ttagtgtagg acaaaaagga agttcagcta
    14821 tgccacataa aagaaatcct gttttaagtg aaaatatcac agggctttgt cgtgtgctta
    14881 gatcttttgt aactccagct ttagaaaatg ttgcactttg gcatgaaaga gatatatctc
    14941 attctagtgt tgaaagattt attttgcctg atgcttttat cacggctgat tttatgctta
    15001 tgcgtcttac aaatttgatt gataagcttt tagtttatcc tgaaaatatg atgaaaaatt
    15061 taaatcttac aggcgggctt gtattttcag ggagggtgct tttagagctt ccatttaaag
    15121 gcattagtcg tgaagaagct tataaaatag ttcaaagaaa cgctatgaaa gtttgggcag
    15181 atttgcaaaa tggtaaggct gctatcaatg aaaaaaatga aagtttgttt ttgttagcgc
    15241 ttttaagcga tgaagattta agaaaaagtt tgagcgaaga ggatgtaaga aaatgtttcg
    15301 attataacta ctatacaaaa aatgttgatg taatttttaa aagaacattt aaataaaaag
    15361 caaggaaggc aatgaaagtt attaaaagaa atggtcgtac agaagaattg gatgtttcta
    15421 agatcaaaaa atgcacctct gatgctgtaa aagatttaga aggtgtgaat ttaagcgaac
    15481 ttgaactcga tgcaaagatt caatttcgtg atggaatttc aactgaagaa attcaaaaaa
    15541 ctttaattaa aactgcagta gataagatag atattgattg tccaaattgg acctttgttg
    15601 cagctagact ttttttattt gatttatata aaaaagttaa tggtatgaat cgctataatc
    15661 atttgcgtga gtattttgaa aagggcgaaa aagaaggaag aatcttactt ggtcttaaag
    15721 aaaaatacga tttagatgat ttaaatgctt atattaaacc tgaacgcgat atgcaattta
    15781 cttatcttgg tattaaaact ttatatgata gatacttgat taaagatagt aaaggtatgc
    15841 ctatagaact tcctcaacaa atgtttatgg ccattgcgat gtttttagcg cagaatgaat
    15901 ttaatcctca agaatgggcg aagaaatttt atgatttaat ttctaaattt gaactcatgc
    15961 ttgcaactcc gactttatct aatgcaagaa caacgcgcca tcagcttagt tcttgttata
    16021 taggatcaac ccctgataat attgaaggta tttttgattc ttaccaagaa atggctttgc
    16081 tttctaaatt tggtggcggt ataggttggg attggtctaa agtgcgtgct atgggtggaa
    16141 gcatagatgg gcataaaaat gccgcaggag ggattatacc tttcttgaaa attactaatg
    16201 atattgccgt ggcagtagat cagctaggaa ccagaaaagg agctatagct gtttatatag
    16261 aaccttggca catggatata agtgatttta ttgatttgcg taaaaattca ggtgaagaaa
    16321 gacgccgtgc ccatgaactt ttccctgctt tatggatcaa tgatcttttt atgaagagag
    16381 taagagctaa tgataaatgg actctttttg atcctgcaga tacagcagat ttatgtgatt
    16441 tatatggcga ggcttttgaa aaacgctatg aagaatatga aaaagatgaa agcattacca
    16501 aagaaatcgt agaagctaaa gagctttgga agaaaatttt gctaaattat tttgaaacag
    16561 gcttgccatt tttatgtttt aaggatagtg ctaatagagc aaatccaaat gctcatgtag
    16621 gaattattag aagttcaaat ttatgtactg aaatttttca aaataccgag ccaaattatt
    16681 atcaaattaa agtagttttt gaaaatggag atgaacttca ttttgatgaa gaacaaaaag
    16741 ttgcgatcga tgggggatat gaaaaaccag ccaaaaaaat ctcaacttta gatagtattg
    16801 atggtaataa agtttatata gtagaaaaat ataaaaatga tggaaaaaca gccgtttgta
    16861 atctagcaag tataaatctt agcaaagtat atactaaaga agatatagag cgtgttgtgc
    16921 caacggctat tcgtatgctt gataatgtga tagatttaaa tttttatcct catagaaaag
    16981 taaaagatac aaatttaaaa tctcgcgcca taggtcttgg agtcatgggt gaggcacaaa
    17041 tgcttgctga agctaagatt tattggggaa gcgatgagca tttaaataaa atcgatgaga
    17101 ttatggaaca aattagcttt gaggctatta atgcgagttc aaatttagct cttgaaaaag
    17161 gttcttatga ggattttgaa ggatcaaatt ggagcaaggg gatttttcct attgatgtag
    17221 caagtcctaa ggctaaagct ttaactttaa gagagggctt atttgatcaa agtgaatgcg
    17281 actgggttaa acttagagaa aaagttaaaa aagatggtat gagaaatggt tatttgatgg
    17341 ccattgcacc tacttcttct atttctattt tggtgggtac tacgcagact atagaacctg
    17401 tttacaaaag aaagtggttt gaacaaaatt taagtggtat gatacctgtt gttgtgccaa
    17461 atttaagcct tgatacttgg caatactata ctccagccta cgaacttgat caaaaaattc
    17521 ttgtaaaggc tgctgctgtg cgtggtaaat ggatcgatca agggcagagt ttaaatatct
    17581 ttttatcgct tgataaagca agtgggggat atttaaatga aatttatcaa ctcgcttggg
    17641 agcttggagt aaaatctact tattatctaa gaagcgaaag ccctgatagt gaaaaagtca
    17701 atgttgcaga tcgtagcata gaatgtgaag gttgccaata aatactaaaa cccaatgaaa
    17761 aatattgggt tttaagagat taagaattgt aaatttcttt atctagggct tttagatttt
    17821 ttgcagtaca aagtgccgaa gtcatagctc ctgagacatt acttgctgtt cttgccatat
    17881 ctataatagg atctatagct aaaatcaaac ttaacatgac aaaattatta ccaaatccaa
    17941 tccctgctag cataatagaa gctgccatag ttgcacttcc aggtactcca gctataccca
    18001 aggatccaat aacagctacc aaaactatca ttaaagcaaa tgtaaaatca atatgtgtat
    18061 gtgtagcaaa agctacaaaa actcccgcta aagctggaaa atatcccgca caaccattaa
    18121 gtcctgttgt tgtacctata gatgctacaa aattagctat agctgaatta actccaaatt
    18181 tattttgcaa agttgaagta gtcataggca aagtgcccaa agaagatctt gagctaaatg
    18241 caaataacca tacaggaaat gctttttttg catattttat agggtttagc ccttgtgaag
    18301 caagaagtaa aaaatgcacc ccgaacatta ttaacatagc tatataaata agcattataa
    18361 aaagtccagc tgttttgata gcttcaaaac cattgcttaa aagcacatta gccatcatac
    18421 aaactacagc ataaggcata aatctaatca ctgtagcagt catgttcatc ataatattat
    18481 aaaaggttag gataaaatta tgaaaacttt taaaggcttg ttcacactct tcttttttag
    18541 aaattttttt agcactaatt cctataaaaa aggaaaaaat gacaatagct ataatatttt
    18601 ctttattaat agctgtaatg atgttgctag gtattagccc tagtataata tttgaaaaag
    18661 tttgaatttc gcgaatttgt ttatctcctt catgtatggc aaaattactt cctaaatcaa
    18721 aactataacc taaaaatata cccaaggttg cagctatggc tgtgctaaag agtatccaaa
    18781 aaagacttat tccaagcaag gaggatattt tgatattttt atcaatttct ataattactt
    18841 ttataatgca aatgcttaca agaggaacaa ctagcatttt tataaaagct acaaaaacag
    18901 aacttacaaa tgcaaaccaa tgttttgttt cactatacca aagaatatta cttgcttctt
    18961 cagcatctgg aaaatttgcc aaatattgca aaacaaaacc aaaccccaaa cccattaaaa
    19021 gcgcaaatag catgcgaaga gaaaaattga tttttatatc ccgcattttt tttaatgcgt
    19081 aaaaaacaac acaaagcata gtaagagtag ctatagtatg agcttgtgaa agcattagaa
    19141 aatcttgaaa aaattgttta tccataaaaa gtccttataa gaaactataa tcaagcacaa
    19201 ggtatatgaa aatatacttg cataaagctt gattttataa atggtaacat aaaaatattt
    19261 taaataagat aaaattagta tgatttattc tatatcttta tgtaggcaat gttcaaatat
    19321 aaatttgtgt tcttgtggta aggcttcaaa taaagcattt gctaaatttc taatctccca
    19381 aagagctgat tttgaactac gcaaagaaat gaaattttgt aaacttcttg cattaatcgt
    19441 tagtgtaagt tcggttttat agctttctgg taagcagtat ttggctatat ctagactaat
    19501 gcttttttgt aaaatagtgc gtaaattttc taaggcttta atgcttgcgt tatcaacctc
    19561 ttcattaccg caaagcacaa gataacggct tgcattttca aaatctccta ttttaaactc
    19621 accttcattg cgaagttctt ttaaggtata acgcgtgctt tttacactag gactagtgtg
    19681 acggtgtctt gcgacttctt gtaagcaagc tcttgaaatt ccttgtatat aaaaagtata
    19741 gtttagatgt tctaaggttg aagcgtgttt gaatttgttg cccacgcgat cgataagttc
    19801 tttatctttt tcgccaccgc aatcgccttt ttcaaagctt tgccaacaag ttcttgttgc
    19861 atgagaacaa acagataatg gagtgtgaaa aagtaaagtg atttgcatgc ttattccttt
    19921 tttgataaaa atattttttg taattcttgc attttttact taaaattcta atgaaataaa
    19981 aagttttatc aagctataat tagataaaaa aataaggctt attatcaatg aaacaaacaa
    20041 aatatatttt tgtaacaggt ggagttttaa gttctttggg taaagggata gccgctgctt
    20101 ctatcgcaac acttttaaaa aattcagggc ttaaagtgag tattttaaaa gctgatcctt
    20161 atatcaatgt tgatccaggc actatgagtc cttttgagca tggagaggtt tttgtaactg
    20221 atgatggagc agaaacggat cttgatttgg ggcattatga gcgttttttg gatgagagtt
    20281 tatctcaaga taataacttc actacaggac gggtttatca aagtgtgatt gaaaaagaaa
    20341 ggcgtggaga atatcttggc aaaaccattc aagttatccc tcatatagta ggagaaatca
    20401 aagatcgcat taaaaaagca ggagaaggca aagatatact tatcgttgaa ataggcggaa
    20461 ctgttgggga tatagaaggc ttgccttttt tagaagctat tcgtgctttg cgtttggaag
    20521 tgggtaaaaa taatgctatg aatattcatc ttactctagt accttttatt aaggctgcag
    20581 gggaattaaa aacaaagcca actcaacata gtgtaggcga gttaaggcgc ataggcatta
    20641 gtcctgatat gattatttgt cgtagtgaaa aagctcttga tagagattta aaagataaaa
    20701 ttgctatttc ttgcggggtg gaaaaaaatt gcgcgataga aagtgttgat gcggctagta
    20761 tttatcaaat tccacttaat tttttaaagc aagatatttt aagccctatt gctgaaattt
    20821 tggatttgaa aaatttaaaa cctaatatgg aaaattggga ctctttggta aaaagagtta
    20881 tagctccaag caatgaagtt aaaatcgctt ttgtaggcaa atatgtggat ttaaaagaaa
    20941 gttataaaag ccttactgaa gctattatac acgcaggtgc agccctagat actaaagtgg
    21001 agttaaaatg ggtagatagt gaaaaacttg aaaatatgga aagttctgaa gtatttaaag
    21061 atgtgagtgg aattttggtt gctgggggat ttggatatcg tggtgtagaa ggtaagataa
    21121 aagccattca atacgcaaga gaaaataaaa ttcctttttt aggaatttgt ttaggtatgc
    21181 agcttgcttt ggtggaattt gctagaaatg tattaaaact taaagatgca aattcaagtg
    21241 aatttaatga aaaatgccaa aatcctgtgg tttatttgat tgatgaattt atggatacaa
    21301 atggagaaaa acaaattcgt actgcaaaaa ctcctttagg tggaactatg cgtttagggg
    21361 cttataaatg tgatatcaag gaaaaatccc ttttggctaa ggtttataat gaagtaaaga
    21421 gtgtaaaaga acgccatcgt catcgctatg aagcaaatcc aaaatataga gcagattttg
    21481 aaaaacacgg tttgattgta agtggtgaaa gcaaaggatt gattgaagca gttgagctta
    21541 actgtcatcc ttttttcttg gctgtgcagt ttcatccaga atttacatca agacttgagc
    21601 atgttaatcc tgtgatttgc agttttatca aggcagctat aaactatgaa gataattaat
    21661 aaaaatgaaa ttaaaaaaat tttggcttca cgctttgaaa aagatttgca taccaaactt
    21721 tgtgatctgc ctttgccatg ctgtttaaag gatgcatata aagcagctaa tcgcatcaaa
    21781 gaagctgtag aaaaaaatga gaaagtcgcc atagtaggag attatgatgt tgatggaatc
    21841 atttcttgtg ttattatggc agaatttttc gatgatatag gttttgatta tattataaga
    21901 attccaaatc gttttaaaga tggatatgga ttaaatgctg agatcatcaa cgaacttgat
    21961 gtaaatttaa taataacagt agataatgga atagctgctc ttgaagcagc caaactctgt
    22021 aaagaaaaaa atatagattt gattatcact gatcatcata tgcctcaaga tgttttacct
    22081 gatgcttttg ccattatcaa tccaaagcaa aaagattgtg attttccaga aattgaaatt
    22141 tgtggagctc aagtcgcatg gtatttgata gcggctttaa aagaggtgtg caagcttaaa
    22201 tatgacatgt gtaaattttt agaacttttg gcgattgcaa ttgttgcaga tatgatggaa
    22261 cttagagatt taaatcgtgc tttagtaagg cgtggcatag atcatattaa caaatctaaa
    22321 agggctgctt ttagggctat taagcattat tatcaaaagg ataaatttgc tcttgataat
    22381 ataggatttt taattgctcc gcttataaat agtgctggaa gaatggatga tgcaagtatt
    22441 tcttatgaat ttttacacac taaagatttt aataaagctt tagaatatct agagcaaatt
    22501 gttagtttta atgaaagtcg taaagatgaa gaaaaacagc tttttgaaga tagtttaaat
    22561 caaatcgatg aaaacgattc ttgtattgtg gtatcgggtt taaattggca tgaaggtgtt
    22621 ttagggattg tggcaagtcg tttagctaaa cattttaata aacctgcttt tgtattttct
    22681 caaaatgaag aacacttaaa aggtagtgca agaagtgttg gcaagattga tattttggct
    22741 ttaatttcta agacaaattc tatattaagc aattatggtg gtcataaagg tgctgctgga
    22801 atcagtttaa actctgaaaa ttttgaacaa tttaaaaata aaatcaaaaa agaatgttcg
    22861 caaatttctg aaagtgaatt tttggatacg gatgaaattt taggaatctt agaacctagc
    22921 gaaattgatt ttgaaatgct tgaaatttta gaatcttttg aaccttttgg acataaaaat
    22981 ccacgacctt tttttgtttt agaaaatctt tgtgtaaaaa ataaaaaact tctaggtaga
    23041 gatgaaaaac acttaaagct tgttttaact aaggaaaata aaaccataga agctttattt
    23101 tttaattttg ataaagagcc agaattgaat caaaatattt ctttgcttgg aagtatttct
    23161 aagaatgaat ttaggggaat ggtaactcca cagtttgttg ttaaagagat tttataaaaa
    23221 tttttactta taatttgcat taataacatt aaaaaattaa tatacaagag attaaaaaat
    23281 tatttatatg ttgtcttttt ataggagtat gtatgaaaaa agctaaatca aggattgcta
    23341 ttttaggaac aggcggaacg atagcaggct tcattgatag cactattgct acaacaggat
    23401 atacggccgg agccattgat atagatgtat taattaaagc agttccgcaa attagagatt
    23461 tagcagatat tagttgggag caaatagcaa atattgatag ttcaaatatg tgtgatgaaa
    23521 tttggttaag gcttgctaaa aaaattgcta agctttttgc tgaggggata gacggtgtgg
    23581 tgataactca tggtactgat actatggaag aaactgctta ttttttaaat ttaaccatta
    23641 aaagtgataa gcccgtagtt ctagttggcg ctatgcgtcc atcaactgct ataagtgcgg
    23701 atggtccgaa aaatctttat aatgcagtgg cattagttgc caataaagaa gctaagaata
    23761 agggtgttat ggtagctata aatgataaaa ttttaagcgc tagaggcgta gtaaaaactc
    23821 atagtttaaa tgttgatgct ttctcttctc ctgattttgg ggatttgggt tatatagtag
    23881 atggtaaagt ctttttctat aataatgtta ctaaagctca cacaaaaaac gctccttttg
    23941 atgtaagcaa actcacaagt ttgccaaaag tagatattct ttatagctat tcaaatgatg
    24001 gtagtggtgt cgctgcaaaa gctttatttg aacatggaac taagggcata gttgttgcag
    24061 gaagtggagc aggaagtata cacaaaaatc aaaaagatgt tttaaaagag cttttaaaaa
    24121 aagggcttaa ggttgttgta agttcaaggg ttgtagcagg ttgtgttgct gtgagtgatt
    24181 cagatgaaaa attaggtttt attagtgctg aagatttaaa tcctcaaaaa gcaagagttt
    24241 tgcttatatt agcacttaca aaaacaagtg atcctaaaaa aattcaagag tattttttaa
    24301 aatattaaaa ttttttaaat atttctaaac ttagggaact tatcttccct aagtcaagcc
    24361 tttcaatcct attaatagta tattatatct tgtatttttt attatcattt aa
//
LOCUS       DARGED010000011        24372 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.011, whole genome shotgun sequence.
ACCESSION   DARGED010000011 DARGED010000000
VERSION     DARGED010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24372
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.011"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..299)
                     /locus_tag="SFZ84_000359"
     CDS             complement(<1..299)
                     /locus_tag="SFZ84_000359"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202516.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKIDLKFNNYFLLNKIIKGNFTNPFDFLDKV"
     gene            complement(434..781)
                     /locus_tag="SFZ84_000360"
     CDS             complement(434..781)
                     /locus_tag="SFZ84_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202517.1"
                     /translation="MKKSILFTSALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(880..1453)
                     /locus_tag="SFZ84_000361"
                     /pseudo
     CDS             complement(880..1453)
                     /locus_tag="SFZ84_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1455..1778)
                     /locus_tag="SFZ84_000362"
     CDS             complement(1455..1778)
                     /locus_tag="SFZ84_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEG8202518.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGNTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKNIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRK"
     gene            2023..3369
                     /locus_tag="SFZ84_000363"
     CDS             2023..3369
                     /locus_tag="SFZ84_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HEG8202519.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANIYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLSIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGIKLNIEKSEHHNEKWFWLNLLVTIGVIGLLISGIIPSYICFM
                     IGLVIILPLNYPNLKIAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGTYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIRDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            3553..5550
                     /locus_tag="SFZ84_000364"
     CDS             3553..5550
                     /locus_tag="SFZ84_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEG8202520.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMIQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            5625..6428
                     /locus_tag="SFZ84_000365"
     CDS             5625..6428
                     /locus_tag="SFZ84_000365"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG8202521.1"
                     /translation="MENLYALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVLILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            6560..8368
                     /locus_tag="SFZ84_000366"
     CDS             6560..8368
                     /locus_tag="SFZ84_000366"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG8202522.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     VKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            8365..8883
                     /locus_tag="SFZ84_000367"
     CDS             8365..8883
                     /locus_tag="SFZ84_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG8202523.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            8922..10013
                     /locus_tag="SFZ84_000368"
     CDS             8922..10013
                     /locus_tag="SFZ84_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8202524.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            10055..13521
                     /gene="vvfC"
                     /locus_tag="SFZ84_000369"
                     /pseudo
     CDS             10055..13521
                     /gene="vvfC"
                     /locus_tag="SFZ84_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
     gene            13602..14630
                     /locus_tag="SFZ84_000370"
     CDS             13602..14630
                     /locus_tag="SFZ84_000370"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG8202525.1"
                     /translation="MKIKAGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNKNLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKITLQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            14640..15086
                     /locus_tag="SFZ84_000371"
     CDS             14640..15086
                     /locus_tag="SFZ84_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8202526.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            15090..15935
                     /gene="argB"
                     /locus_tag="SFZ84_000372"
     CDS             15090..15935
                     /gene="argB"
                     /locus_tag="SFZ84_000372"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG8202527.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            15939..17126
                     /locus_tag="SFZ84_000373"
     CDS             15939..17126
                     /locus_tag="SFZ84_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG8202528.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAVVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLDKSVKVFKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(17146..17775)
                     /locus_tag="SFZ84_000374"
     CDS             complement(17146..17775)
                     /locus_tag="SFZ84_000374"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG8202529.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            17864..18412
                     /locus_tag="SFZ84_000375"
     CDS             17864..18412
                     /locus_tag="SFZ84_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG8202530.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(18381..19754)
                     /locus_tag="SFZ84_000376"
     CDS             complement(18381..19754)
                     /locus_tag="SFZ84_000376"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG8202531.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKNQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDVEDIEFLRKQGIFDTEFLDFLTNFKFKGEIYAMRE
                     GEVIFPNEPLLCVKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTIQDYTKEQISKLDENFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(19741..20763)
                     /locus_tag="SFZ84_000377"
     CDS             complement(19741..20763)
                     /locus_tag="SFZ84_000377"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG8202532.1"
                     /translation="MQRKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGNVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(20777..21187)
                     /locus_tag="SFZ84_000378"
     CDS             complement(20777..21187)
                     /locus_tag="SFZ84_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8202533.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYIPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            complement(21188..21796)
                     /gene="pyrE"
                     /locus_tag="SFZ84_000379"
     CDS             complement(21188..21796)
                     /gene="pyrE"
                     /locus_tag="SFZ84_000379"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG8202534.1"
                     /translation="MNLEQIYKGCGAYLEGHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCVVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(21799..22362)
                     /gene="frr"
                     /locus_tag="SFZ84_000380"
     CDS             complement(21799..22362)
                     /gene="frr"
                     /locus_tag="SFZ84_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG8202535.1"
                     /translation="MIMLSEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDAYTIKIDESVKSKESELLKV"
     gene            complement(22372..22743)
                     /gene="secG"
                     /locus_tag="SFZ84_000381"
     CDS             complement(22372..22743)
                     /gene="secG"
                     /locus_tag="SFZ84_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG8202536.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(22846..23541)
                     /locus_tag="SFZ84_000382"
     CDS             complement(22846..23541)
                     /locus_tag="SFZ84_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG8202537.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            23702..24334
                     /locus_tag="SFZ84_000383"
     CDS             23702..24334
                     /locus_tag="SFZ84_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG8202538.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKV"
BASE COUNT         8338 a         3139 c         4332 g         8563 t
ORIGIN      
        1 actttatcta aaaaatcaaa aggatttgta aaatttcctt ttataatttt atttaacaaa
       61 aaataattat taaatttaag gtcgattttg gttgaaagct gtgtatgaga gtgatttaaa
      121 gtaaaacttc ccttagaagt taaaaaacct tttttgaagt aaatatctgt aattgtataa
      181 tcaggattgc tgtttttaat aaatttatta aataaaagtt cgttagtgta tcctatataa
      241 aatatatgaa taataaaacc taatataaaa caaaaaacaa taaaaatcca ttttttcatt
      301 atttgcctta gatgaaaata taagtgttat tttataaatt gcttgttaaa aaagagttta
      361 aatttttatt taagagtaat gaagtagttt gccgaagaat gatttttata aatcccttgt
      421 taagggattt atattaataa gcttttttat aacattgaat ttcaattttt ctagctactg
      481 gaatagcctg agtatttggt gtagcaggta ttccataaga aattttactt tctaaaaaat
      541 ttccaacctg taaatcttta aaagttccat ctttatctgt tccaaaaata ccacaatcat
      601 ccatttctat ttcggtattt ggtagaactt ttatagccat ttgtccgcca taaatagagt
      661 caataagcaa ggttttattg ttatcataaa tttgtgcaat agtaccttca agttttagac
      721 tatctgcaaa aagcattgag ctagctaaaa gtgctgatgt gaataaaata ctttttttca
      781 taattatttc tccttaatgt aaagtgatga cattataaaa tttttaagtg aagtgaatgt
      841 gaaattaaaa atttttgact ttcataaaat taatacgctt taattatttt caaaaaaagc
      901 ttgtggaaaa agatataaac cttcattaaa aggagctttg attagagtat attgaagatg
      961 aaatggggta atggagttaa tagattgttc taaaaaaagt agtgcagtaa aaagcatctt
     1021 tatctgtact tatgataaat tttctgccta aatgttccaa agctttagca actatttttt
     1081 gtttggtttt ttcatcaaat tttaatcttt taatagcaat tttatgactc agttttaaaa
     1141 aatcatccat agagcttaag ataacttggt ctttagcatt tttgtcatca tctgttgtag
     1201 catgtatgag tatagttgga gaagttttaa ctaccatagc gatatgagaa taagggcttt
     1261 gacttaaatt ttctattaaa aaactttcac ttcctattcc tgcacgaaag acaagatcac
     1321 ctatttcaag aaaaggtaga tagggttttt tgatgatttg atttgaagga ttggaattta
     1381 taaagaaacc caaaattcca atcaataaaa ataaaattaa gaaaaaatat aaaattttat
     1441 ttaagtaaaa caagctattt tctatctttt ttagcaagaa aaacattgct gctttgatta
     1501 ttatcattgt taaataacac taaaactctg attttagcag aatctttatt gattgttttt
     1561 tcttcaattt gaatattttt aacaccaccc attctttttg ctttggctgc attttcagca
     1621 acaacttgag tgattttatc actaacaaat gttttttctt catcgctttt agcttcgcta
     1681 agatcaatgt aactcataac agatttagta ttaccactgt aaagatcttt tgtaaaattt
     1741 ttagctaaat cttcaggatt tgaagaaccg caagccacta aaaaaaggca actaaagcca
     1801 agaaagaaag tttaaaaaat ttcatttttt tcttttgata gtataaatta aaatattcat
     1861 aattatagca aaataattca aaattatttt tttattcttg tttataatgg ttacattaga
     1921 aaatatattt tttttaaaaa agctataaat ttaaacacat ataagttgga gttaaaatat
     1981 cctattttat tatcgaataa aaatgataca aaaggatagg atatggaaat ttttttagct
     2041 ttattgggtt ttttctcgtt aggattgata gtttggcttt tgctaaaaga ttatactact
     2101 ccagcactag cttttataag tgtaagtatt agtgtagctt gtattttact tattcttgaa
     2161 cggcttggtt ttggcgtggg tgtagcttta ggggttaaag gaggtgtttt tgatattaaa
     2221 acattggttg tttttattaa agatggagtc aaaagcgtaa cggatacggc agctttgttt
     2281 gttttttcta tactcttttt tagtgtttta aatgcaagtg gtttttttac taaaatttta
     2341 aatgcatttt tatcaaaaat gaaagctaat atatatcaag tttgcattct tactgttttt
     2401 attgctgctg ctgtacattt agatggttcg ggtgcttcta cttttcttat tgtaatacct
     2461 gcattattac ctatttatga gcgtttaagt ataagaaaga cttcaatgtt attgattatt
     2521 acttcagcta tgggggttat gaatgttatt ccttggggtg gtcctacttt aagagcggct
     2581 actaatatag gaatggatgc aaatttgctt tggcaccata ttatacctat tcagattgta
     2641 ggtttagtat tatcccttct tttggcaatt tggattgcta agatagaaat aaaaagaggc
     2701 gcaggcgcag gtaacttgtc gggaataaaa ttaaatatag aaaaaagcga gcaccataat
     2761 gaaaaatggt tttggttaaa tttacttgta actattgggg ttattgggct tttaattagt
     2821 ggtattattc ctagttatat ttgctttatg atagggcttg taataatttt accgcttaat
     2881 tatcctaatt taaaaatagc taaaaaagtt ttagatcgtg caagtgctgg tgcaatgctt
     2941 atgtatatta ctttaattgg tgctgggata ttaataggcg tatttgataa aagtggtatt
     3001 atggagaaaa tgggtgtttt gattttaaat ttcgttccag attatttagg tacttatatt
     3061 cctttaatgg tagggatatt ggctgttcca atggcaatta ttttttgtac ggattcttat
     3121 ttttatggag tgatgcctat agttttgagt gtaactaagg cttttggtgc tgaacctttg
     3181 actatagcta ttatcatggt gatagcaaga aattgtgcga catttatttc tcctgttgtg
     3241 cctgcaactt tgctaggttg tggtttagca gaggttaata ttagagatca tatcaaaaga
     3301 agcttttttt atatatgggg tataagtatt atttgcttga tttttgctga ggtagctggg
     3361 ataatataat taaaataaaa gaacttttga tttttcaatg attagctcat tgttttatga
     3421 tatttttgag tcaaaaattt ataaaaatat aagcgttttt ttgtattatt ttattttgct
     3481 ttagagaaaa attataaatt taaacttata agaatatttt ttaagttgaa agtaaaattt
     3541 taaaacggag aaatgatgta caaaaaacaa aatttaccag aacttacctt aaggggtttg
     3601 gttttgggaa gtattttaac tattattttt acagcttcaa atgtatattt agggttaaaa
     3661 gtgggactta ctttttcatc atcaattcca gctgtggtca tctccatggc ggttttgagt
     3721 ctttttaaga cttcaaatat tttagaaaat aatatgattc aaactcaagc ttcagcagca
     3781 ggaactttat catcagttat ttttgttatc ccaggacttt ttatgtgtgg gtattggagt
     3841 gaatttccac tttggcaaac ttttatgata tgtctttgtg gtggcggact tggagtgctt
     3901 tttactatac cattaagaag gactatggtg gttgaaagca agcttgctta tcctgaaggt
     3961 agagctgcag ctgaaatttt aaaagtagcc aataaagatc agagtagtaa aaaaggaaaa
     4021 caaggcatta aagaaatagc attaggctct tttatagctg ctatttttag tttgttaagc
     4081 aatggtttta aactcgctgc aagtgagagt aattttgctt ttatttggaa taaaatggct
     4141 tttggttttt ctatgggata ttctttggca cttttagggg caggttattt agttggttta
     4201 gcaggtgcta tagctctttt tgtaggtatg tttttagctt ggggtatttt tactccctat
     4261 ctttcaaatt ttgaattcga tagtgcaaaa aatgccgtag atttagcttc tagtgtatgg
     4321 agttctaaag taaggcttat aggaacagga gctattgcta tagcagcgct ttggacttta
     4381 atagaacttt taaaacccgt tattgaaggt attaaagaaa ttgttaaaaa tgttaaaatt
     4441 actaatcaag aaaaaaatga aagaacaaat atagaccttt ctttaaaaag tatttttata
     4501 ctttttgttt taatggttgt gggtttattt attacttttt atagttttgt tgaagatgct
     4561 aacttaagta tttattatca aatgctattt tcatttgttg gaactttagt ttctgtttta
     4621 ataggttttt ttgttgcagc agcttgcgga tatatggcag gacttgtagg atcttcttct
     4681 agtcctattt ctggaatcgg acttattggt gttattattt cttctattgt ttttttggtt
     4741 ttaggtgtgg aactttttca agatcctatg ctttctaaat ttgcagtagc attagctatt
     4801 tttactacta gtgttatttt agctacagct gctatttcga atgataattt acaagattta
     4861 aagacaggac atttagtcgg agctactcct tggaaacaac aagttgcttt acttgtaggc
     4921 tgtgtttttg gtgctttggc tatagttcct gttttaaatt tgctttatca agcctatggt
     4981 tttgtcggag caatgccaag agaaggtatg gatgcttcat cagctttagc agcaccgcaa
     5041 gcaaatttaa tgagtactat cgcccaagga atttttcatc acaatataga gtggggttat
     5101 atggcttttg gtgtatttgt aggaatttta atgattatta tagataaaat tttaagaaga
     5161 acacagaaaa tgtctttgcc gcctttagcc gttggaatag gtatttacct tccccctgct
     5221 gtaaatatac ctttagttat aggcggaatt ttaaaatata ttgtaatgca acacttgact
     5281 aaaaaatatg caaaaaattc tcataaagaa gaaaaacttg caagttgtga gcaaagaggc
     5341 acgctttttg cttcagggct tatagtgggt gaaagtattt ttggggtaat tatcgcagga
     5401 attactgtat tttcagtaag tatgggtggt agtgaaaatc ctttagcttt aaatttagca
     5461 aattttcatg atagtgagct tttcgcactt atcttttttg tgggagttgt attatatttc
     5521 attaagcgta ttgttaaaaa agatgcttaa tttttggggt taaaacccta tttaatccat
     5581 tctgatataa tttttctttt gcaattatca ttcaaggatt aaatatggaa aatttatatg
     5641 ctttaatact tggaattata gaaggtctga ctgagttttt acctgtttct tcaacaggac
     5701 atatgatttt aggtacgact attttaggta tcgatataga tgagttttgg aaaagctttt
     5761 tgattatcat ccagcttggt tctattttgg cggtaatttt tgtattttgg cgtaaattgt
     5821 ttcaagggct tgatatttgg ttaaaacttg cagtgggatt ttttcctacc ggagttatag
     5881 ggctttttgt ggcaaaatac ttaaatgctt tatttaatgg ttgggttgtg gttggaatgc
     5941 tcatttttgg tggtgttgtg cttattctta tagaacttgc gcacaaaaat aaacaatatc
     6001 gtatcaattc tttagaagaa ataagcttta aacaagcttt ttgtataggt atttttcaat
     6061 ctttagccat gattcctggc acttcaagga gtggagcaag tattattggt gggcttttgt
     6121 taggatttaa tagaaaagtg gctgctgagt ttagtttttt gcttgccatt ccaacgatga
     6181 ttatcgctac agcttatagc atttataaag agcctgagct tcttggcaat gcaaattctt
     6241 taattccttt aggcataggt tttatcactg cttttattgt tgcagtttta gttataaaat
     6301 ttttcttaaa atttatttct aaattcgact ttatcccttt tggaatttat cgtattattt
     6361 taggatttgt tttcttttat ttgtattata gtgggatttt aaatgctgga agtgaattta
     6421 agctataaat aaatattaaa tttattctaa gatttttttt aaaaataagc tgaatttcaa
     6481 aaataattaa gtcttagaaa gttaaaatta gaactttata aacactcaca gggtaagtga
     6541 gcgacaaagg gttaaaaata tggaaaaaga agttattgcg tatttggaca atgagacgat
     6601 aattgactct caaagtgtga aaaatacaaa tttaaaagaa atttattttg ataattctaa
     6661 agaaagttta gaagtgatac gccattcttg tgcgcatttg atggcacagg cgattaagag
     6721 cttgtatcct gaggctaaat ttttcgttgg tcctgttata gaagatggat tttattatga
     6781 ttttcgtgta gaaagtaaga ttggcgaaga agatttagta aaaattgaaa aaaagatgaa
     6841 agaacttgct gaagcaaaga ttgaaatttc aaaatatgaa atcacaaaaa acgaagcttt
     6901 ggctaaattt caaaatgatg atttaaaaca agaagtttta ttgcgtattc ctgatggagc
     6961 tgtaagtatt tataaacaag gtgaatttga agatttgtgt cgtggtcctc atgtgccaaa
     7021 tacgaaattt ttacgctttt ttaaactcac tcgtgttgca ggagcgtatt tgggtggcga
     7081 tgaaaaaaga gaaatgctta ctcgaattta tgggactgct tttgcagata aggaaagttt
     7141 aaaagagtat ttaaccatta ttgaagaagc taaaaaacgc gatcatagaa agcttggaac
     7201 agagcttaaa ctttttactt ttgatgatga gatcggagga ggccttccta tctggttaag
     7261 taatggtgca agacttagat ctaaacttga acatatgctt tataaaattc atcgtttgcg
     7321 tggttatgag cctgtgcgtg ggcctgagct tttaaaagca gatgcatgga aaatcagtgg
     7381 gcattatgca aactataaag aaaatatgta ttttacacaa attgatgaac aagagtatgg
     7441 tattaagcct atgaactgtg tggggcatat taaaatttat caaagtgatg taagaagcta
     7501 tcgtgatttg cctttgaaat tttttgaata tggcgtagtg catcgtcatg aaaaaagtgg
     7561 ggttttgcac ggacttttta gagtgagaga attcactcaa gatgatgcac atattttttg
     7621 tatgccaagt cagattaaag agcaggtttt agaaatttta gcttttgtgg ataatttgat
     7681 gaaattattt gattttagct atgaaatgga aatttcaact aaacctgaaa aagccatagg
     7741 tgatgatgaa atttgggaag tggcgactaa ggctttaaaa gaagctttag atgaacaagg
     7801 tttaaaatac ggcatcgatg aaggtggcgg ggctttttat gggccaaaga ttgatattaa
     7861 aatcactgat gctttaaaaa gaaagtggca atgtggaacc atacaagtag attttaacct
     7921 gccaagtcgt tttaaacttg aatacactga tagtgataat gaaaaaaaac aacctgtaat
     7981 gttgcatcgt gcgattttag gttcttttga aagatttata ggaattttaa ccgagcattg
     8041 tgcgggtgag tttccgtttt ttatcgcacc aactgcggtg ggtatagtgc caataggcga
     8101 agcacatatt gcttacgcaa aagaaattca aaaagaatta ttagagctta atatcgatag
     8161 cgaggtgtat gaaaaaaatg agagcttaag taaaaaaatt cgtatcgctg aaaagcaaaa
     8221 attacctatg attttagttt taggcgatga tgaggtggta aagcgtagcg ttgctttaag
     8281 agatagaaga gctaaagaac aaaaaaatct tagcttggac gaatttatta aattagttaa
     8341 ggagaaaatg agtgaggtac acttttgagt aaagaaaaag aagtattgct caatgaagaa
     8401 ataagagcgg atgaaatcag atgtgttggc gatgatggca aagtttatgg tattatcagt
     8461 agtgatgaag ctttagaaat tgcaaatcgt ttaggacttg atcttgtaat gatagctgca
     8521 gatgctaagc cacctgtttg caagatcatg gactatggta aattccgtta tcaacaagag
     8581 aaaaaacaaa aagaagcaaa gaaaaaacaa aaagtgattg atataaaaga aatcaaactt
     8641 tctgtaaaaa ttgctcaaaa tgatattaat tacaaggtaa aacatgcttt agaattttta
     8701 gaacaaggta agcatgtgag atttcgtgtg ttcttaaaag gacgtgaaat ggcaactcct
     8761 gaagcaggtg tagctttgct tgaaaaaatt tggactatga tagaaaatga agctaatcgt
     8821 gacaaagagc caaattttga aggtcgttat gtaaatatgc ttgtaactcc aaaaaaagct
     8881 taatccactt ttgtggataa ggcttttaaa ggttttaaat tttgaaagaa aatccttctt
     8941 ttttaaaaga gcaaattata acttatcttg gaaataaaag agcactttta agttttttaa
     9001 ataatggctt taaggtagct aaaaaagaac ttggtaaaga taaatttagt ttttgtgata
     9061 tatttagtgg ctcaggtgtt gtaagtcgtt ttgcaaaagc acactcaaat tatattttag
     9121 ccaatgattt agaagattat tcaaaactca tcaatgagtg ttatcttgct aataaagaca
     9181 aagatttact tcaaaatata aaaaagtatt ataaaaattt aatccaaaat ttagattttc
     9241 aaaaaggttt tatcagtgag ctttatgctc caaaagatga tgatgatatt aaaaaaaatg
     9301 aaagggtttt ttatactttt aaaaatgctt tatatcttga tactataagg caaaaaatcg
     9361 aaaatgaaat tccaaaagaa ttgaggcatt tctttatagc tcctttgatt tatgaagcca
     9421 gtgttcattc aaatactagc ggagttttta aaggttttta taagggtaag gatggcatcg
     9481 gaaaatttgg tggcgaagga caaaatgcac ttaaacgcat taaaggagaa atagagctta
     9541 aaatgcctat tttttcaaat ttttcttgtg aatttgaagt gatgcaaaag gatgcaaaca
     9601 tgcttgcaaa agaacttgat ttttttgatg tagtgtatct tgacccccct tataatcagc
     9661 acccttatag ttctaattat tttatgctaa atttaattgc aaattataaa aaacctgaag
     9721 aaatttctaa aatcagtggc attccaaagg attggaaccg cagtactttt aataagtcaa
     9781 aatttgccca agatgcttta tttgaactta ttaatgattt aaaagcaaga gtgattttac
     9841 tttcttataa ttgtgaaggt tttgtaaaaa aagaaatttt tttaaagcgc ttaagcactc
     9901 ttggaaaatg ccggatttta gagcaaaaat ataatacttt tagagcttct cgcaatctta
     9961 aaaatcgcaa catccatctt catgagcaac tttatatttt agttaaaaat tagtttttcg
    10021 tgctaaaatt gcacttaaaa atgaggaggg atttatgaaa ctaaaattat ctttttgtac
    10081 attaatggca tttggttttt ctaactatct ttttgcttca gctattgatc caaagttatt
    10141 ttcaagaata tcttgatttt gccagtaata aaggcaaatt tcaagtaggt caaattggct
    10201 tttaaatttt agcaaaaaat cctagtcaaa atatctcttt taatgtgcct atgattgatt
    10261 tttctacttc aaatcgtgga ggaaaattcc aaggagaatt taccaatata ggacaatctt
    10321 atatagtcag tgcttctcat atgagtacaa gtttaaatac tgggaagtaa ataaaggcta
    10381 tgtgaaacaa ggtagtgttt tacactttgg aggtgtagca aatagaatcg taagctcaag
    10441 tgataatttt acttataaaa aagaaaatgt ggattttgct gttttaaaaa tgagtaagat
    10501 tagtctcaat aaaagtgcaa atttgagtaa agatttaaat cttattgaaa aagattctgg
    10561 cgatggtgga gagtggagat atttatgaat acaaggatcc attttgggat agttgtcaaa
    10621 gtggaaaatg tgattattca aaaggcaaag gcaagctttt tgatagttcg cgttatgagt
    10681 actttgtaag agagggaagt ggtattgtag ctttaggttt tgaagataca aataaagtac
    10741 ccattaagat ttttgattct aatgaaatta atttaggagg ttttgtcagt ttagctccta
    10801 aaaatactga agataagcgt tttaagttgc aatttcttaa ttataccaat gataaaagaa
    10861 atccttttac aagttcttca acacctgggg attctggaag tggagtttat gtttatgata
    10921 agattgataa aaaatggtat ttagtaggtg cagtaagtac gagtaattgt aatgcccatt
    10981 ttactgatgg atatacttgt tcacaggttg attatgcttt gatcaatcaa gtaaagatca
    11041 atgaatttca aaatactcat aaaatagcca taggatctgg aacttataca cttagtagcg
    11101 atggtttggt gaaagatggt aaaaaaatag aaaatgtaag tttgatttct aagactaatg
    11161 tgggttatgt aagctataaa aattcttttg atgataaaaa taattgtgat aagagaattg
    11221 aagaaatgca aaatagcaag gatttgtatt tttctcaaaa tggaaatata aattaaatag
    11281 cgatgtggat ttaggcgcta gtgttttaaa tttgataaaa attcaaattg gcaaataaca
    11341 ggcgataaat ggcttataca tggcggaatt tatgctgata agggttcaag gtagaatata
    11401 atgttaaaac caaaaaagat gattttcttt ataaaatggg tgaaggagag cttgttgtca
    11461 aaagtcaaag tgtggataca ggacttagaa tgggtgagga ccaaggtaag tcttgagggt
    11521 gaaggtttaa gttttggcga aatttatatg aatggcagaa ctttggattt atcaggggct
    11581 taacattaaa ttttgatcaa attaaaactg actctaataa tgtttttatc acaagttctt
    11641 aatcaggaat acatttaaat ttagaaaaca agcaagatta tctttatcat ggcaatatct
    11701 tttcagatga agctgtaaca atgagtgcca atacagacaa agctttgatt tttgatggta
    11761 atatttacaa taaagaaggt gtttttagga cagaaaatgc caagttaaat tttcaaggac
    11821 atgctagaat acacgcttat gtaagcaaag aacaagctaa aaaacttcaa gaacatggtt
    11881 taagtgcttt aactaagcct gtaagtttta cacaagaaga ttgggttttt gttttaaaag
    11941 agcttaattt agaaaaaaag cgagttttat ttagggcgta atgtaagctt aaaagtagaa
    12001 aaccttaatg ctaaaaattc caaaatagag cttggaagta aaaatttgtg gatcgatgaa
    12061 aaagatgggg aaaatattat tgataagact gatgattatt cttatggaga tgttgtataa
    12121 acaggagttg gcaaagaaat ggcttttgag caaaagcttt aaaataccca aaatgctaag
    12181 atagaaaagg tttattttag tgtaaattta aatcttgatc attctgatgt tactttgcaa
    12241 aacacatttt ttagtggtaa tatcaaaggt atcaatgata cgcaaaaaaa tcttgcgatt
    12301 aaagattctt tgcttgagtc tcatatacaa atgagcaatc ttcaagtaga aaaaagtgct
    12361 atttatagga aagttgatgc aaaaaaaaat taagtgcaaa taatacaata tttaaaatca
    12421 atgtggattt tgaaaattct aaagcagatt atattaattc taaggaaagc acacaaggag
    12481 taaataatac tttagtatta atttttctta ataatcctag taaaaagcgg gtttaaatat
    12541 cttactagct catttaaaag atgaaaataa acatttaaca agggaatttt ttactatgcc
    12601 aaatgtgagc aaggttttag tacgtatacc ccaaatgttg ttttttctca taatgaagaa
    12661 aattttgccc agagtggaat ttagaaaaaa ttgattctaa gattaaagat gaatattttt
    12721 tttactaatg ataatactca agctattgta aaaactaaat ctatacttgc tcaagctatt
    12781 ttaggctcca tgataggagt gggataatat gcataaaaga atgggggaat tacgcaataa
    12841 tccttatgaa agtggtgtat ggttaagaac ttttggatgg ggtacgagtg atgagtataa
    12901 tagtggaaaa tactttgaaa ttcaaagcgg acatgataaa ttaaacgagt attcgaattt
    12961 cgagctttac agtggagtaa ggtttttata gtgattttgt tttagatata tttattatca
    13021 aaatgaaata aatgcaaatt ttattccagg aaatcaaggt agattagatg ataatgatgg
    13081 ttcgcataat attatcttaa gtgctgagtt aggttataga aaagcttatg ataaatttta
    13141 tcttgagccg agtttggaat ttatcagtgg ttatgtagga gctatggatc taaaaggaga
    13201 tattgctagt ttaaaacgat tttcttatat tcctttagtc gtaaaaacag catttttcat
    13261 aggaagtcaa aattaaaatt taaattttag aacaggactt ggtttgtatg cggatccgat
    13321 taaagcagga gatcaaatct tggaggatca agcaagtcag agaagatatg aaggaaaaaa
    13381 gatcaaagaa tgtttataaa tttaggaaat gattataagc ttaacgataa aacacgcttt
    13441 agttttgaat ttgaaaagac attttttggc gatttaaatg tagattggag tgcaaatgct
    13501 aatttaagat atagttttta aataaaaaat aatttaaaaa ttgtattttt attttaagct
    13561 tttttgttta taatacttgc ttttacattt aaaggataaa gatgaaaata aaagctggga
    13621 ttttaggagc gagtggttat gcgggaaatg aacttgttcg cattttgctt aatcatccca
    13681 aggttgaaat ttcttatttg ggttcgagtt ctagcgtggg gcaaaattat caagatcttt
    13741 atcctaacac ccctttaaat ttatgttttg aaaataaaaa tttagatgaa cttgagcttg
    13801 atcttttgtt tttggctact ccgcatgaat ttagtgctaa gcttttaaat aagaatttgt
    13861 taaaaaagat gaaaatcatt gatttaagtg cggattttcg tcttaaaaat cctaaagatt
    13921 acgagctttg gtataaattc actcatccta atcaagagct tttgcaaaat gcagtttatg
    13981 gactttgcga gctttataaa gaagagataa aaaaagcaag tttggtggca aatccaggtt
    14041 gctataccac ctgttctatc ttaagtcttt atccgctttt taaagaaaag attattgatt
    14101 ttaactcagt tattattgat gcaaaaagtg gagtaagtgg agcaggaaga agtgcaaagg
    14161 tggaaaatct tttttgtgaa gttaatgaaa atatcaaagc ttataattta gctttgcatc
    14221 gccatactcc tgaaattgaa gagcatttaa gctacgcagc caaaaagaaa atcactctac
    14281 aatttacccc tcatcttgtg tctatgcaaa gaggaatttt aatcagtgct tatgcaaatt
    14341 taaaagagga tttgcaagaa caagatatac gcgatattta tacaaaatac tatcaaaaca
    14401 ataaattcat aaggctttta ccgccgcagt cgcttccgca gactcggtgg gttaaatcaa
    14461 gcaattttgc ggatataaat tttagtgtag atcaacgcac aaagcgtgtt attgtgcttg
    14521 gtgctattga taatttaatc aaaggtgcag caggacaagc tgttcaaaat atgaatttaa
    14581 tgtttgattt tgatgaagat gaaggactta aattctttgc aaatttgtaa aggataaaaa
    14641 tgttaatacg agctatgcaa aaaagcgatt atgaagccgt ttataagctt tggtgtgaga
    14701 taaaaggctt tgggataaga agcattgatg atagcaaaga aaatatagaa aattttttag
    14761 atagaaaccc aaatcttagc gttgtagcag tgattgatga agaaattgta ggaagtatac
    14821 tttgcgggca tgatggacgc acaggaggat tttatcatgt atgtgtacat aaagatcata
    14881 gaaaaaaggg tatagcgcac gagatgacaa aattttgtct tgaggcttta aaagctcaaa
    14941 aaatcaataa aatcgccctg atcgctttta aaaacaatga tttaggcaat gagttttgga
    15001 aacattatgg ttttacttta agagaagatg cgaattatta cgatctttct ttaaatgagt
    15061 ataatcaaac tagctttaat gcttaaggaa tgatcatgca aaaatattta gaaaaagcca
    15121 atgtcttaat cgaagctttg ccttatatac gcaaatttaa ttccaagatt atacttataa
    15181 aatacggcgg atcagctatg gaaaatgaag agctaaagca ttgcgtgatg caagatatag
    15241 ctcttttaaa acttgtgggt ttaaagccta tcatcgtaca tggtggggga aaagatattt
    15301 ctgctatgtg tgaaaaatta ggcgtaaaga gtgagtttaa aaacggtctt agggttagtg
    15361 ataaagccac tactgaagta gccagtatgg ttttaaatca tatcaataaa aatttagtcc
    15421 atagtttgca aaatttagga gttaaagcca tagggctttg tggtaaagat ggcgcgcttt
    15481 tagaatgtgt gaaaaaagat gaaaatttag cttttgttgg cacgatacaa aaggtaaatt
    15541 cgaaaatttt agaagagctt ttggaaaaag attttttacc tatcattgct cctattggca
    15601 tggatgagaa ttttaatact tataatatca acgctgatga cgcagcttgt gcgatcgcta
    15661 aggctttaag ggctgaaaaa cttgcttttt taactgatac tgcagggctt tatgaggatt
    15721 ttaatgataa aaattcttta atttctaaaa tcagccttga acaggctaaa attttagctc
    15781 ctaaaataga aggtggtatg catgtaaaat taaaatcttg cattgatgct tgtgaaaatg
    15841 gagtcaaaaa ggtacatatt ttagatgggc gtgtgaaaca ttctttgttg cttgagtttt
    15901 ttaccgatga aggtataggc actttggtgg gttaaaggat gaaaatggat tataaagaac
    15961 aaagtcatat tgtccctact tataagcgtt ttgatatagt tttagaaaaa gggcaggggg
    16021 tttatctttt tgatgataag gctaaaaaat atcttgattt ttcaagtggt ataggtgttt
    16081 gtgctttagg atataatcat gctaaattta atgctaaaat caaagctcaa gtggataaac
    16141 ttttacatac tagcaattta tattataatg aaaacatagc cgctgcagct aaaaatttag
    16201 ccaaagctag tgctttagag cgtgtttttt ttacaaattc tggtacagaa agtatagaag
    16261 gagcgatgaa aacagctaga aaatacgcct ttaacaaagg cattaagggt ggacaattta
    16321 tcgcttttaa gcattctttt catgggcgta ctttaggggc tttatcgctt actgctaatg
    16381 aaaaatatca aaagcctttt aagcctttaa tttcaggggt taaatttgca aaatataatg
    16441 atatttcaag cgttgaaaaa ctagtaaatg aaaaaacttg tgccattatc ttagaaagtg
    16501 tgcaaggaga aggtgggata aatcctgcaa ataaagattt ttacaaagcc ttaagaaagc
    16561 tttgcgatga aaaagatata ttattaatcg ctgatgaaat tcaatgtggt atgggtagaa
    16621 gtggaaaatt ttttgcctat gagcacgcac aaattttgcc tgatatcatg acttcagcga
    16681 aggccttggg ttgtgggctt agtgtgggtg ctgttgtaat aaatcaaaag gtagcaagca
    16741 attctttaga agcaggcgat catggtagca cttatggggg aaatcctttg gtttgtgcag
    16801 gagtgaatgc ggtttttgaa atttttaaag aagaaaaaat tttagaaaat gtcaataaac
    16861 tcacgcctta tttagagcaa agtttagatg agttgatcaa agaatttgat ttttgtaaaa
    16921 aacgcaaagg cttagggttt atgcaagggc tgagtcttga taaaagtgta aaagtattca
    16981 aggtcattca aaaatgccaa gaaaatgcac ttttactgat aagttgcgga gagaatgatt
    17041 tgagattttt acctccttta attttgcaaa aagaacatat tgatgaaatg agcgaaaagt
    17101 taagaaaggc tctaaagagt ttttaataaa ttttgtaaaa aaagtttatt cttttccatc
    17161 tactataggc acaaataaac attcttctaa aatttctttt tgtaaatttg tgccattttt
    17221 tctaaggcgt gtgatgaatt gtttgccatt gtgtaaaata ggagcgacta aaatcccgtc
    17281 atcgcttaat tgatcgagta aaatttcagg aatttgtgtc gcataagcag aaaataaaat
    17341 cctatcataa ggagcataat ttttccagcc attttgccca tcatcaaatt ttacattgat
    17401 attaaaaagt tctaattctc tgaaagtttg agcggctttt ttggctaaat tttctatgcg
    17461 ttctatggta aaaacacgcc ttatgacttt gcttaaaatc gcagcttgat agccacttcc
    17521 acaacctatc tctaaaatac tatcagcatt tttaaaatct aaggccatag tcattttagc
    17581 tacagttaaa ggtgaactaa tccattgaga atttgccaaa ggcaaagcat caaggcgata
    17641 agcatgggct tttaaaggag aaaaaatttc acgcggaatt tgacaaaaag cattaaaaag
    17701 ttcttcattg ataaaaactt tttgtgcaat ttcttcagcc atattttgac atcttttttg
    17761 ttcaaatgcg ttcattactt ctcctataaa tttaaataaa aattgtaact aaaaaagttg
    17821 aaatagagtt aaacttagct atacttaaat aaaaaggaaa aaaatgctta taaaatttaa
    17881 aaatcatagt cccaaactag gtcaaaatgt ttttgttgca gagggcgcta aaatcatagg
    17941 agaaatagaa ataggagatg aaagtagtat ttggtttaat tgtgttttaa gagccgatgt
    18001 taattttata aaaattggca aaagaaccaa tattcaagat cttagcacgg tgcatgtttg
    18061 gcatagggaa tttgatgaaa aaggaaagtt aaaagacgct ggttttccta cgataatagg
    18121 agatgatgta accataggac ataattgcgt tatccatgct tgtgtgataa aaaatcgtgt
    18181 tttaatcgga atgaatgctg ttatcatgga tagtgctttg atagaagaag atagcatagt
    18241 gggtgctgga agcgttgtaa caaagggtaa aaaatttccg ccacgctctt tgatacttgg
    18301 aaatcctgca aaatttgtgc gtgaattaaa taatgaagaa ataaattttc taaaacaatc
    18361 cgctttaaat tatgtggatt ttaaaaacga gtttttaaaa gatcttcagt gatattttga
    18421 agtttaggcg agagttttac ttcaaatttc acaaaacgat caagatctaa aaaattctca
    18481 tcgagttttg aaatttgctc ttttgtataa tcttgaatag tatttaaaga tgacttttta
    18541 agaagtcttt tttctttgta gactaatttt aaaagttctt tgcgttctaa attttcatct
    18601 tgatttgggt tttcgtcaaa aacataaagt tcatcaaaaa ggattttttg cgtgttttta
    18661 tcataaaccc taaaaagctt tttaaaatga ggtagggttg atttttcgtt attttcgctg
    18721 attttgattt taggttttat gccttgatct tctaaggctg cgagtttata aacgcaacta
    18781 aaaatagggt cacttgaagc agtgatcaat ctttcaccta caccaaagat atcaataggt
    18841 gcattttgtt ctttgagttt tttaatgctc cattcatcaa gtgcgttaga aactatgatt
    18901 ttacattttt gaagtcctgc ttgatcaagt tcttgtctga ttttcaaact caacttaagt
    18961 aaatttccag aatctattct cacaccgcct tcttggatac caaattcttt aaaaacttta
    19021 atcgcatttt taagtccgct atttagacaa tcataagtat caatcaaaaa aacaggattt
    19081 tttggataaa ttttcacata agctttaaaa gcttcaagtt cattttcaaa catttgcacc
    19141 caagaatgtg ccatagttcc attgataggg atattataaa tttttcctgc taaagtacaa
    19201 gcacttccta tgcaacctcc tataaaagct gctcttgctc cttttaaggc tgcttcactt
    19261 ccttgtgctc tgcgtgaacc aaattctaaa attttactgt ctttagctgc acgcacgata
    19321 cgattggttt tagtagcaat aaggctttgg tggtttaaac ttaaaagtaa aaaagtttct
    19381 aaaagctgtg cttctatggt tgtagcttta acgcaaagca aaggttcatt tggaaaaatc
    19441 acttctcctt cgcgcatagc ataaatttca cccttaaatt taaagttagt taaaaaatct
    19501 aaaaattctg tatcaaaaat accttgtttt cttaaaaatt ctatatcttc tacatcaaaa
    19561 ctcaaatttt caacaaagtc taaaatatct tcaagacctg caaaaatagc aaaagaacct
    19621 gaatctggaa tttttctaaa aaatatatca aaataacaaa tttgattttt tttattgttt
    19681 ttgaaatagc cttgagacat tgtaaattca taaaaatcac aaagtaaggc taaagaagtt
    19741 ttagaagtca tcaaagctta tactaccctt agaataattc gttactttac tttcaaagaa
    19801 attgctcttt tgatcgttaa attttgaaaa atcatctacc catttaatag gatgttttgc
    19861 attatataac ttatctaaat tgatcgcact taatctttga tctacaagat aatggatata
    19921 ttcttctatg atatcatcag taaagcccat gatttgattt tgagtgatgt atttacccca
    19981 tttgatctca agatctccag cttttttaaa catatcataa attttattga tattttcatc
    20041 atggaacaaa tcaggtcttt ctttgcgtac tgaattgatc atattttgaa ataataaaag
    20101 atgtgtgatt tcatctcttt ggataaagcg gatcatttgt gctgaaccta gcatttttcc
    20161 tgcacgtgca agtgcgtaaa tggcagtaaa accactataa aaatatactc cttctaaaat
    20221 ttgatttgcc accatagcca aaagcagttt attatcatct acattgcctg ctaattcttc
    20281 ataaatgctt gaaataaagt catttttttc acgcaaagtt tcatcatgct tttccatttc
    20341 ataaatcaaa tctgtattat cgcaaatcgc ttcaaccata acagcgtaag attttgaatg
    20401 gtttgcttct tcataagctt ggcgtgccaa aaccgcattg atttcaggag ctgtgatgta
    20461 agggttgata ttatctgcta aattattggt ttgaaaacta tccatagaaa taagctgact
    20521 ccaaaccaaa tcatacattc ttttttcacc tacagttaaa ttacagcgat aatcaagtgc
    20581 atctttagtt gtatccactt cttttggaaa ccaagtattt gcctccatta aatcccaaag
    20641 ttttaaagcc caggtatatt ttgccttagt gaaatttaaa attccatgtg ggttaccatc
    20701 aaaaatttta cgatctccta gggtttcgtt tgaacttgga ttgtaaattc tttttctttg
    20761 catttttaac ctttctttat gctttagtag ctatacaact ttgagttaaa atatcgtgta
    20821 aatttaaacg atcttttctt acaaaactga caaataaacc aaagagtaag ccaaaactta
    20881 taataaatat cacatatctt agtaaaattc taagaaaact tagtttcttt cccgttttta
    20941 tatcaataag atataaatca tatgctttaa gacctgggct ttgtgccttt tttgttaaaa
    21001 aaatagcttg aatcaaacca aataaaaaag tacataaagt tgtgataaaa tggttgttta
    21061 aaaaagcttc tttagagcct aatagaaaat aaaataaata caaaatagga atataaataa
    21121 gaaaaatatc tataagcaaa gctctaaatc ttagccatct agagctaatt tttgctttag
    21181 ttttcattta atttccacgg cttcctggtt ttatagcttt actccctttt ttacaaagtg
    21241 gacaatttgt ttcatcataa atttcaaatt caaaatttcc tagagtaaag agtggtaaat
    21301 tttcaggtaa tttcgcatta tcttttcttg gagattttaa attttctact acacaaaaac
    21361 cacgatttgc caatgctgca aaacctacaa caatgccacc taaactttca atgatttttg
    21421 cactctctaa agcactacca cctgtagtaa tgatatcttc acaaattata aatttttcac
    21481 cctttttcac ctcaaaacca cgtcttaaag tcatttcttt atttactctt tcagtgaaga
    21541 taaaacgttt actacaagct ctcgcaagct cataacctgc taaaattcca cctaaagcag
    21601 gagaacaaat gctatcaaat tctatcttat agcttgcaat aatctttgca agttcatcac
    21661 aaagttttgc tgctaatttt ggattctcta aaacttttgc actttgaaga taaaattgcg
    21721 aatgtttacc tgaacttagt aaaaaatgcc cttctaaata agcaccacaa cctttataaa
    21781 tttgctctaa attcatcgtt aaacctttaa aagttcactt tctttacttt ttacactctc
    21841 atcaattttt attgtgtagg cgtcggtaag tttttgcact tcatcataag ctttttttgc
    21901 ttcatcttcg cttattgcct tatctttttc tagtttttta actgcatcgt tggcatcttt
    21961 gcgtatattt cttatagaaa cttttgcctt ttcacccata gctttagctt gctttacatt
    22021 ttcttctctt tgctctctag tcatcggagg gaaaaataat tttacacttt cgccgtcatt
    22081 gtttggattt acaccgatat ttgcagctgc aatagcactt tctatggttt ttagtaaagg
    22141 tttttcccaa ggagtgatgc taatagttga agcatcgctt gctaaaacag ttgctacttg
    22201 atttaaagga gtttgagttc cgtaataatc tactgtaata tgatctaaaa tatgggtatt
    22261 aacttttcca gttcttaaag tggtgaagtc tttttttaag gcttctaaag atttttcact
    22321 ttgggttttt tgtttgttaa aaatttcact tagcattatc atttccttta attatttact
    22381 tgaattaaca tcgcttggaa gttgtggcgc acttggagcg atagaatttg tgtttggggt
    22441 agcaggcaca ataggagcgc ttggaatagt agtgttgttg ttttctactt taattttctc
    22501 tgctagagag tccttgctag ctttattgta taaataacca agaccaatag tatttgcaat
    22561 aagtaaaatt cccatgacaa aggtaaattt tgccaaaaat ccagccggtc ctttggcgcc
    22621 aaataaactt tcattgcttc cactataagc tccaagtcct atacttgaac ttttttgaag
    22681 taaaactgct atacaaataa ctacaacgat gataaattgc aaaatgatta aaagagtgat
    22741 cattgaaaat tcctaaaagt taatttttaa atgattattt taactaaata aaacttgaaa
    22801 agttttgaaa cttgaaaagt tttgtgagaa aaatcccaca aaaatttatc tgctattgaa
    22861 gcttcttaag atattaagta aagatacgaa aagattaaca aaatcaagat aaagtgctac
    22921 tgcaccttcg attggagttt cataatttcc gcggataata ttttgcgtat cataaagaat
    22981 gtaaaatgaa aataatattg cagctactgc tgaaatagct agattaacta tactgctttg
    23041 gaagaaaagg tttagtaaag atgctgctac aataacgatt aatactataa ataaagcttt
    23101 acccataaca gtaaaatctt tttttgtatt catagcaaat acactaagtc ctgcaaaagc
    23161 aactgttgtt aaagcaaaag cttgagcgat gataattcct ccagctggta gagctaaaac
    23221 tgaaataagt aaaggtgtaa gcgttaaacc tgagcagaaa gtaaaaccaa aaagtaaaac
    23281 aagatttaat ggagcttctc tttttttcca ttgcaaagca aataaaagtc cgatttcaac
    23341 agcaaaaagg atccaaaaag ttacttgtga ttgtataaaa aatgatgcta aagcaaaaat
    23401 tcctacatac gcacctactg ttgcagctaa taatgaagca gcaaaaagtt gataagtttg
    23461 tttaataaaa atacttaatt cgcttgagcg tgtattttca aattcttttg atcttgagta
    23521 gtctctatca taaagactca taaaattctc cttgcaaaat tgttagattt tttaaaatct
    23581 tgagcgaaat ctaacatatt agactaaata aaaagttaat ttatataata tctttatgat
    23641 taaatgaaat ctttgctgaa attttgttat aattttaaga ttttagtttc aggttggttt
    23701 tatggaaaat cttattagtg gtgcgattaa gtttatgcaa gaagacttta aggagcatga
    23761 agaacttttt gaaagtctaa aaaataagca aaatccccat actcttttta taggttgttc
    23821 tgattctaga gtaattccaa atttgatcac caatacgggt ccaggtgagc tttttgtaat
    23881 acgaaatatt gcaaatatag ttccacctta tcgcattggg gaagattact tagcgacaac
    23941 ttcagcaata gagtatgctt taaattcatt gcatattaaa aatatcgtcg tttgtggcca
    24001 tagtaattgt ggaggttgca atgctcttta ttattctgat gaagagttaa ataaaattcc
    24061 taatgtgaaa aaatggctta ctatgttaga tccgataaaa aaagatgtaa tgatttttgc
    24121 aagagacgat ttggctatgc gttcatggct tacagaaaaa ttaaatttag taaattcttt
    24181 gcaaaatata cttacttatc caggcgtgca agaagcttta gatgaaggaa aaatagaagt
    24241 acatgcttgg tattatatta tagagacagg tgaaatttat gagtatgatt ttaaagcaaa
    24301 aatttttact ttaatacagg ataggaaagt ttaatgaaaa aaattatttt tagtttatgt
    24361 ttttttattt ta
//
LOCUS       DARGED010000012        22964 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.012, whole genome shotgun sequence.
ACCESSION   DARGED010000012 DARGED010000000
VERSION     DARGED010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.012"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..341)
                     /locus_tag="SFZ84_000384"
     CDS             complement(<1..341)
                     /locus_tag="SFZ84_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202539.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLL"
     gene            complement(322..2265)
                     /gene="ligA"
                     /locus_tag="SFZ84_000385"
     CDS             complement(322..2265)
                     /gene="ligA"
                     /locus_tag="SFZ84_000385"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG8202540.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            complement(2266..3408)
                     /gene="folP"
                     /locus_tag="SFZ84_000386"
     CDS             complement(2266..3408)
                     /gene="folP"
                     /locus_tag="SFZ84_000386"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG8202541.1"
                     /translation="MKFFKINPNTDFDLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRIGAELITHKEVITAKITHSNALLMASKEQIQKLIAKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPAYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPSYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            complement(3410..4009)
                     /locus_tag="SFZ84_000387"
     CDS             complement(3410..4009)
                     /locus_tag="SFZ84_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG8202542.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYEGYELAKLNSKSGVLLATLLLNYYTKK"
     gene            complement(4015..4551)
                     /locus_tag="SFZ84_000388"
     CDS             complement(4015..4551)
                     /locus_tag="SFZ84_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG8202543.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            complement(4552..5754)
                     /locus_tag="SFZ84_000389"
     CDS             complement(4552..5754)
                     /locus_tag="SFZ84_000389"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG8202544.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSVQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            complement(5756..6226)
                     /locus_tag="SFZ84_000390"
     CDS             complement(5756..6226)
                     /locus_tag="SFZ84_000390"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG8202545.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVRVIKYFEEKGYI"
     gene            6327..7394
                     /locus_tag="SFZ84_000391"
     CDS             6327..7394
                     /locus_tag="SFZ84_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8202546.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFQALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVSRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKALITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            7453..7860
                     /gene="tatB"
                     /locus_tag="SFZ84_000392"
     CDS             7453..7860
                     /gene="tatB"
                     /locus_tag="SFZ84_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG8202547.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            7861..8598
                     /gene="tatC"
                     /locus_tag="SFZ84_000393"
     CDS             7861..8598
                     /gene="tatC"
                     /locus_tag="SFZ84_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG8202548.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            8591..9619
                     /gene="queA"
                     /locus_tag="SFZ84_000394"
     CDS             8591..9619
                     /gene="queA"
                     /locus_tag="SFZ84_000394"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG8202549.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHDPLFLAQIK
                     GRVKKDEILYFKDDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGRIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(9608..10573)
                     /gene="lpxD"
                     /locus_tag="SFZ84_000395"
     CDS             complement(9608..10573)
                     /gene="lpxD"
                     /locus_tag="SFZ84_000395"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG8202550.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(10570..11034)
                     /gene="ilvN"
                     /locus_tag="SFZ84_000396"
     CDS             complement(10570..11034)
                     /gene="ilvN"
                     /locus_tag="SFZ84_000396"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG8202551.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(11031..12731)
                     /locus_tag="SFZ84_000397"
     CDS             complement(11031..12731)
                     /locus_tag="SFZ84_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG8202552.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(12749..13192)
                     /locus_tag="SFZ84_000398"
     CDS             complement(12749..13192)
                     /locus_tag="SFZ84_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG8202553.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(13204..14223)
                     /locus_tag="SFZ84_000399"
     CDS             complement(13204..14223)
                     /locus_tag="SFZ84_000399"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG8202554.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDEALAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            14316..14390
                     /locus_tag="SFZ84_000400"
     tRNA            14316..14390
                     /locus_tag="SFZ84_000400"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14348..14350,aa:Gln,seq:ttg)
     gene            14424..14499
                     /locus_tag="SFZ84_000401"
     tRNA            14424..14499
                     /locus_tag="SFZ84_000401"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14457..14459,aa:Met,seq:cat)
     gene            complement(14521..15392)
                     /locus_tag="SFZ84_000402"
                     /pseudo
     CDS             complement(14521..15392)
                     /locus_tag="SFZ84_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
     gene            complement(15389..16456)
                     /locus_tag="SFZ84_000403"
     CDS             complement(15389..16456)
                     /locus_tag="SFZ84_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8202555.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVIKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIIVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLTYNVQSKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTLIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKSILTHKEIS"
     gene            complement(16465..16770)
                     /locus_tag="SFZ84_000404"
     CDS             complement(16465..16770)
                     /locus_tag="SFZ84_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202556.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIINFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            complement(16784..16954)
                     /locus_tag="SFZ84_000405"
     CDS             complement(16784..16954)
                     /locus_tag="SFZ84_000405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202557.1"
                     /translation="MIKPIPKFQKCIKCGKSFLAKPKSDALNTLDFICSDCKGEKSGF
                     LSSLFEIFKPKH"
     gene            complement(16965..18083)
                     /locus_tag="SFZ84_000406"
                     /pseudo
     CDS             complement(16965..18083)
                     /locus_tag="SFZ84_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870111.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding GTPase"
     gene            complement(18161..18367)
                     /locus_tag="SFZ84_000407"
     CDS             complement(18161..18367)
                     /locus_tag="SFZ84_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202558.1"
                     /translation="MGIILGILSLIAGFVAIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFYAIYLITILALVLWRKT"
     gene            complement(18358..18960)
                     /locus_tag="SFZ84_000408"
     CDS             complement(18358..18960)
                     /locus_tag="SFZ84_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202559.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDMINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            complement(19023..20399)
                     /locus_tag="SFZ84_000409"
     CDS             complement(19023..20399)
                     /locus_tag="SFZ84_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG8202560.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYTSIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            20553..21482
                     /locus_tag="SFZ84_000410"
     CDS             20553..21482
                     /locus_tag="SFZ84_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HEG8202561.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLINNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYVIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEIELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(21530..22858)
                     /locus_tag="SFZ84_000411"
     CDS             complement(21530..22858)
                     /locus_tag="SFZ84_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8202562.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLIMLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
BASE COUNT         7757 a         4123 c         2952 g         8132 t
ORIGIN      
        1 atcaataaag gtaaaattat aaatataaaa acaaaatcaa ttttttcaag atttaaaaaa
       61 tttaaaaata aagaaacaag tccaaaaatc gccaaaaaaa agctaaaaat ataaagataa
      121 aaatccccca tactaatacg ataaaacaaa cttcccttaa tcaaagtagc ttcttttata
      181 atattttttc taagctttaa aaataaaaag aattcccaaa aaagtgttaa aaaaatagga
      241 attaaaaaaa ataaagaaaa agcactcctt tgccaagtta gcaaaaagcc aaaaaggctc
      301 aaaagcgtta aaatataaga actattcttt aacaagctca ttaaaagcac tttcatttat
      361 acattttact tcaagctctt tagccttgct aagtttagaa cctgcctctt ctccaaaaag
      421 cacatagtca gtctttttag aaacagagcc gcttacctta cccccaagct tttctatcaa
      481 agccttaaac tcatctcttg ggcgtgaaag agtgcctgta attacaaaag ttttaccaaa
      541 aatcacacca tcgcttttga tttcaagttt ttctattttc aaatttaaaa gcttgtaaaa
      601 ctcatcaatt cttgtacgat taacacgcgt aaattcgcaa agacttaaag ccatttgctc
      661 tccaaaacct tctaaattag cataagcttc aaaactttgc ttgtgccact ctttaccaaa
      721 acttaaactt aattttttag ccgcaacctc gccaatatgc tctattccta aagctgtgat
      781 aaaacgaaaa agctcacatt ctcttgcttg ttctatggcg tttaaaagat tgttgatttt
      841 cttttcttta aagccttcta aaccttcaaa atcactaaat tttaaatgaa aaatgctctc
      901 aagcgtagtg atttttttgt gcttgtataa aagttctact atattttctc caagtccgtc
      961 gatattaaga cattttttag aaacaaaatg aatgatagaa tttacaagtc tatcttcaca
     1021 atctatattt tgacatttta ttaaagttcc ttcatccaaa agctcacttt ggcaagtagg
     1081 acaaagctta gggcgtgaaa tttccatctc taaaccttct ctacgctctt taaaaacctt
     1141 agtaatttta gggataacat cgccacttct tatcacgctt acaaaatcat tgattttaac
     1201 atcaagtctt gcaatctcat caaaattatg aagggtggct gattttacta caaccccatc
     1261 taaatttaca ggttctaaaa ccgccacagg agtaatcact ccacttcttc ctacttgtaa
     1321 atttacccct attaaacgcg tggttttttc aagtgcagga aatttaaaag ctgccataaa
     1381 ttttggaaat tttaccgtat agcctaattc ttcacaaagt gcaagatcat caactcttac
     1441 caccataccg tccatcatca taggcttttt ctctcttaaa gctaaaagct catcataagc
     1501 ttttaaaacc tcatctaaat tagcgcaaag tcttacaaaa tcatctttta aaaaaccaag
     1561 ctctctgata aattgcatca cctcgctgtg tttggtgaaa tttaaggtat tttcccctac
     1621 tccccaagga taaaatttca aatttctttc tttagtgatg cttgtatcaa gctgccttaa
     1681 actcccgctt gcagcattgc gtggattggc aaataaactt tgatttaaaa gggctctttt
     1741 ttcgttaatt ttctcaaaat catcttttaa aatcaccact tctccacgaa tttctatcct
     1801 ttctttatag gctatatttt taggtatatt ttctatctca aaaacattaa gcgttatatc
     1861 ctcacccact tcgccatcgc ccctagtggc accgcttact aatttaccat tttcataaag
     1921 caaatttaaa ctcgctccat caaatttagg ctctataaaa aagttttttt cacattttgc
     1981 gcgttttgcc caagccctaa gctcactctc atcaaataca tcttccatcg accacatacg
     2041 ccttaaatga gctatttttt taaactcgct ttgtatgata ggagctattt tttgcgttgg
     2101 agagtctttt gaaatttcat ctttgttttg ttcttcaaaa actcttaatt ctctaattaa
     2161 agcatcgtat tcttcatcgc tagccaaggg ttcatctttt tcataatatg ccctcatcca
     2221 caaatttgct aaagcaactt tttctaaata ctcttctttt ttcatctaaa ctcctatatt
     2281 atccattgcc tgcgctaaag caaaaagttg tttgtgttca tataaatcat gcactcttat
     2341 aatactagca ccattttcaa aagcctttaa atgcaaatac aaagttcctg ctaaacgatc
     2401 tttaatctcg ctttgaaaat acgcattaat cacacttttg cgactcgcac ctataagtaa
     2461 aggcttatta aattgcaaaa aatgctctaa gtgtttgatt aaaatcatat tatgccccgc
     2521 actctttcca aaaccaatac ctacatctaa aatactttct tttactccaa aactttctaa
     2581 aagttcaagt ttttctttaa aaaacaaagt catctcatca agcaaatctt cataagaagg
     2641 attatcttgc atgttatttg gattgttttg catgtgcatt aagcaatatt ttgcctcata
     2701 tttacttgca agtttagcta gattaagatt tcttaaactt gtaatatcat taatgagttt
     2761 aaaaccctta tttaaagcat attctagaca atattcatca aaactatcta aactaaaaat
     2821 tgcttgttcg taataatttt tctcataaat taagtcaagt acttttttca gtcttttaaa
     2881 ttcctcttcc ttgccacaat actcactccc aggtcttgaa ctaaccgcac ctatatcgat
     2941 atacgcaggc tttaaagcaa gaaagtcatt aagccttttt tcaaagtctt cttcactcac
     3001 acgacttttt gcattaaaac tgtcttcatt gacattaatc actgccataa gctcagcttt
     3061 ttttggtttt aaaaaatctt tttgtaaaaa aagagccaaa tttttaagtc caaaatcttg
     3121 aagtttttct ttagcaataa gcttttgaat ttgctcttta cttgccatta aaagtgcatt
     3181 tgaatgagtg atttttgcag taattacttc tttatgagta ataagttcag ctcctattct
     3241 taaagcatct tgttttaaaa tatttgctgc aggagtggaa atatctttga taaaaataaa
     3301 atgaattttt gttttttcac tcataatctt ttgtcccatt ttatggggat ttatgaaaga
     3361 acaaagcaaa tcaaaatcgg tatttggatt gattttaaaa aatttcattt tatttctttg
     3421 tatagtaatt taacaaaaga gtagctaaaa gcaccccgct tttagaattt aattttgcaa
     3481 gctcatagcc ttcataaaaa aactctaatt cttcagcatt aaaatcttta tatttcacac
     3541 attctttagc aagtaatgcg atttgatcca taagttcatt tttatccaaa ttttcatttt
     3601 tttgcaaaaa atcaaaaagc attcttaaat ccattctttt aagatctaaa tcaagttttt
     3661 taacttcctt ttcaactttt cttttttcgc aaataagacg cgattttatg gtaggtaaaa
     3721 gtaaattttt agaaggtacc acaataagaa atttaatatt ttttggaggc tcttcaagaa
     3781 gtttaagtaa aaaattttgt gcttctatcc tataagaatc cgccattaaa acaataattt
     3841 tttcttcagt ttctgcaata tagctttctt tttcaaccgc tcttgcatca tcaagtaaaa
     3901 attcattttg tggcataaaa aatcttaatt ttttaatacc aaaattatta atcatttctt
     3961 ctttaatacc taaaaaatct tcgctgataa taatcttact aataaacaaa atatttatcc
     4021 taattgcacc ttggaaaata atattgcatc caaacttaca tcaaaaagtt gatataaact
     4081 aataagcttg atatccaagt ctttatcttt agaatttaaa taaaaactat cttgtaactg
     4141 ctcatcaaaa agccacaata aactatcatc tcttgattta gcgattaaag atttattatc
     4201 agaagcactt cctatataaa aatacacata accattagga aaagaaatgt caagcaagtc
     4261 attaagtaaa gctatatctt ctgaactttg tactttcttc ttgcataaag aatttaacga
     4321 cacaaaagga agcataggac gagcggcttt tgaatttata ttttttaaaa aatactcttc
     4381 ataccaagat ctttgttcat cgcacattaa gacaaaagtg cgtccctcta aaagatattt
     4441 aagtcttgca gccatcaaag gagcccattc taaacgacgc gactccaacc atgccataaa
     4501 agctccgcca ttgcgaatat tttcaagagt aaaacttaaa aaatcactca tttatttatc
     4561 aagtccgtag cactcatgta gtgctctaac tgcaagttct ccgtattttt catgaactat
     4621 cattgaaatt ttaatttcac tagtagaaat cataccgata ttaatcccct catcagctaa
     4681 agctttaaaa gctttacttg ccactcctga atgtgatttc atgcctacgc cgactataga
     4741 aacttttact acagcactat cactttctat agttgttttt gagcttaaaa ttttttgcat
     4801 agcatttttg gctaattcaa gttcattttg aggaactgta aaacccaaat ttgtagcgcc
     4861 atcaactcca acattttgta taatcatatc tacattaata ttttcatttg ccaaaacaga
     4921 aaaaatttca gctgcgattc caggcttatc ttctacattt cttaaagtca ctcttgcttg
     4981 atttttatcc aaagcaatac cacttactaa agcttgttcc attccatctt cctttgttat
     5041 cattgttcct tcgttattgt taaaactact tctagttact aagttaacat ttaatttttt
     5101 tgcaagctct acagagcgat tttgcaaaac ttttgcaccc aaacttgcaa gttcaagcat
     5161 ttcttcataa gaaattttat ccaatttctt tgcctttggt tcaattcttg gatctgttgt
     5221 ataaacccca tcaacatcgg tataaatttc acacaaatcc gcatttaagg cacctgctac
     5281 cgccacagca cttaagtcgc ttccaccacg ccctaaggta gttacattac cttcctcatc
     5341 tacaccttga aaacctgcta taacgactat tttaccattt tgaagttctg attttatcgc
     5401 ttttgtatca atatgatgaa ttcttgcctt tgtaaaaaca ctatctgtaa taattcctgc
     5461 ttttctccca gaaaacgata tagcgggaca acccttttca tttaaagcga tagaaagtaa
     5521 agcgcttgtt acacgctctc cgctgcttaa aagcatatcc atatctttac cattaggagt
     5581 tttactaaaa tattcagctt gctcgataag agtatttgtc accccactca ttgcagatac
     5641 tacaacaaca agttgattac cctgttgcac actttggata accctattgg ctactgcttc
     5701 gatacgctca agtgttccaa cgcttgttcc accatatttt tgaactataa gcattttaga
     5761 tataaccttt ctcttcaaaa tatttgatca ctctaacata aatatttttt ttgaaatgat
     5821 taatcatttc aaaaatttgt ttaacactca caaattgata atcatcaaat tcaggatgct
     5881 tagtattgat attgattgta gcaccgtgct ttaaacgcac taaaaaatat ttttgaatct
     5941 gcccatcata aggatacatt tttttaacaa ttttactcgg aaaatcataa ctcaaccatt
     6001 ctggatactc agcaatgatt tcaacctcat cagtgcctat ttcttctttt aattctctaa
     6061 ataaagcgtt tttgacactt tcacctttat caatgcctcc ttgtggaaat tgccaaatat
     6121 tatccatatc acttctttta gctataaaaa tcttacactc gaaaggataa gaacttgata
     6181 aaacaatagc tgcaacattt ggtctataat ttttctcgtt ttccacaata tttttcctta
     6241 aatctcaagg atataatttt aacctaaatc aaatcaaatt tttattaaaa tacattaaaa
     6301 atttaataaa atattttagg gtttttatgc atttttatat ccatattcca ttttgtgaaa
     6361 gcaaatgtaa ttattgcgct tttacaagtt tgaaaaaaaa tgattatgaa aaagcctatt
     6421 ttcaggcttt aaaagaagat attgtttttc aattaaaaca atttaacatt caatcaaatc
     6481 aaattaaaac cttattcata ggcggaggaa caccaagttg tgtcgatgcg tataattatg
     6541 aagatatttt taaaatttta tatcccttac tagataaaaa tgtagaaatt tcatgcgaag
     6601 ctaatcccaa ctcagcaaca ttaaattggc ttaaaaatat gaaaaatcta ggagttagtc
     6661 gcatttcttt tggagctcaa agttttcatc ctaaaaaact tcactttctt ggaagaattc
     6721 acaatcaaga aatgattatc aaagcattag aaaatgcaaa taaagtaggt tttaaaaata
     6781 tcaatttaga tcttatttat gatacaaaat tagacaataa aaaaatgctt gaatttgaac
     6841 tcttacactt aaaacaaatc aaggctttaa tcacacacct tagtgcttat aatttaacca
     6901 tagaatcaaa cacagccttt gccaaaaaag aacatttcaa aaaaaatgct cctaatttaa
     6961 tgaaattttt tatcaaacaa cttctagagc ttgacttttt tcaatatgaa atcagcaatt
     7021 tttcaaaaac caaagcccaa atttgcaaac ataatcttgc ttattggcaa ggaaaaaact
     7081 acctagcttg tggattaagt gcggtaggat tttatgaaaa taagcgtttt tatacagcaa
     7141 aaaatttaaa aaattacata gaaaatccca cttttagatc tatagagcaa ctaagctcta
     7201 aagacttgaa tttagaacac ctatttttag gacttagaag tatagtaggg attgatgaaa
     7261 caaaactcaa tcaatggcaa aaagacaaaa taaatatatt attaaaagaa aaaaaactct
     7321 tttacaaaaa taaaagatat tttaatccta attttctcat tagcgacgaa cttgctttat
     7381 atctctcatc ttaaatttaa gttttttaag taaaatattt atttaaaata tcaaatcaaa
     7441 gagtaacgat taatgagttt tggtgaaatt atagttattt tagttgtagc gattttagtc
     7501 ttagggcctg ataaacttcc agaagctata gtgcaaatag caaaaattct aaaggctgta
     7561 aaacgcaaca tagatgatgc aaaatcaagc atagaaaaag aaatacgcat caatgactta
     7621 aaagaagaag ctaagaaata caaagatgaa ttttcaagca ctaatgaaaa tatacgcaaa
     7681 aaactcagtt ttgaagaatt tgatgacctt aaaagagata ttttagataa aacaaaggta
     7741 gatttaacct ttgatagcag agatgataaa gtaaaaaata accttagcgg acaaaattta
     7801 aatacagagg aaaaaccaaa tcttagcaaa ttagaaacac aagataaaac ggaaaaataa
     7861 atgtttgaag aattaagacc tcatttaata gaacttagaa aacgcctttt tataagcgtt
     7921 gcttgcattg tagttatgtt tattgtatgt tttgctctac gaagctatat cttagatatt
     7981 ttaaaagctc cacttatagc tgttttaccc gaagtagcca aacatgtgaa tgtaattgaa
     8041 gtacaagaag ccttatttac cgcaatgaag gttagttttt ttgcagcctt tatcttttct
     8101 ctacctgtaa ttttttggca attttggaaa tttgtagctc caggacttta tgataatgaa
     8161 aaacgccttg tggtgccttt tgttagcttt gcaagcatta tgtttgcctt gggggcttgt
     8221 ttttgctatt ttgttgtagt gcctttggct tttaaatttt taattaattt tggtttaaat
     8281 gaagatttta atcctgtgat taccatagga acttatgtag atttttttac gaaagttgtt
     8341 gtggcttttg gcttagcttt tgaaatgcct gtaattgcct ttttctttgc taaaatcgga
     8401 cttatagatg atagtttttt aaaacgccat tttcgcatag ctgttttagt tatttttgtt
     8461 ttttcagcct ttatgactcc acctgatgtt ttatctcaat ttttaatggc aggaccactt
     8521 tgcggacttt atggactttc tattttaatt gttcaaaagg taaatcctgc tccaaaagat
     8581 aaagaaagtg atgaataaag acttacttct ttcaagctat gattacactc tagctaatga
     8641 actcatagcc aactatccta caaatccaaa agaagatgct aggcttttgg tttttgatcg
     8701 caaaaacaaa gaaatttttc atactacttt taaaaattta caagactttt tacccaactg
     8761 cgcgattttt ttcaatgata ccaaagttat taaagcaaga atttatggca ataaagcaag
     8821 cggaggaaaa atagagcttt tcttgcatca acctttttta aattctcacg atccgctttt
     8881 tctagctcaa attaaagggc gtgttaaaaa agatgaaatc ttatatttta aagatgattt
     8941 aaaagtacgc gttgtagaac ttttaaatga tggtcttcga aaagttcaat tttttcaaaa
     9001 tgataaaacc ttagacacct caaatcttta caacctgctt gacaagatag gacgtatacc
     9061 cttgcctcct tatattaaaa gggaggatga aaaaagtgat ttgaaagatt atcaaagtat
     9121 ctttgcaaaa aatttaggtg cagtggctgc tccgactgca agtttacatt ttagtgagac
     9181 tatgcttgaa aatttaagaa aaaaacacga aatttatcat ttaaccttac atgtaggagc
     9241 tggaaccttt aaaagcgtgg aatgcgaaaa tatacaagag cataaaatgc atagcgaatt
     9301 ttttaatatt ccgcagcaag catgtgaaat tatagattct aaacaagcta ttttaggcgt
     9361 aggaacaaca gtaacaagaa ccatagaata ttatgcaaga actaaaacaa aaaatggttt
     9421 ttgtgatctt tttttacacc cgcaaaatcc acctataaga caaaatcatc ttttaaccaa
     9481 ttttcattta ccaaaatcta ctcttatcat gctagtttca gcttttatcg gtagagaaca
     9541 gtgtttaaaa ctttatgaac tcgccataaa agaaaaatat cgcttttact cttatggcga
     9601 tgcgatgtta atcttgtgat ttttctttaa aatttattgc tattttagct tgaagtttta
     9661 gccaatcttt ttgaagcatg ataggaaaac ctccataaac acgcccgcct tctaaatttt
     9721 tactcacacc gcctcttgca gctatagtac taaaatcgcc tatttttaaa tgtccactcg
     9781 ttgcactttg accacccata ataacattgc gtcctaactc acttgaacct gaaattccag
     9841 tttgtgccac aatgatacaa ttttgaccta tattgcaatt atgtccgatt tgaactagat
     9901 tgtctacctt agtacctgct ttgataatag tactatcaaa aactgctcta tctatagttg
     9961 tacaagcccc cacttctaca aaatcttcta aaaccacatt gccattatga taaattttat
    10021 aatgttcgcc gtttttattg tgcgcataac caaagccatc gcttcctatt acacaattgg
    10081 caagcaaatg acatttttta ccgattttag tatcattata aatcactaca ttaggatgga
    10141 taatactctc atcaccaatg ctgacattat cgcctatata agctcccgcc ataatgatta
    10201 cattttcacc gatatttaca ttatcaccta tataaacatt aggcatgatt cttgcgcttt
    10261 ttgcgatatt ttgtactttt tctttagctg tgcttatcaa aggtttagca aaaagcttgc
    10321 ttaaaaaagc aaaactcaaa tgtggacttt gagtaatcaa agctttagta tctttaggta
    10381 ctaaattttc atattcttta gatactaaaa tagcagcagc tcctgtgtga ggtatatctt
    10441 tggtattttt ctcaccatca caataagtaa gctctgtaaa atttgctttc aataaagaat
    10501 ttaaagcact gatttctata tcctcgcctt tatattccaa gcttaaaaat tctgctattt
    10561 cacttaattt catttaatct ccatcaaaac agatccactg cgaactatat cactaggatt
    10621 gtatttttta attgttttta aaaaattatc aatgcgattt gcatcatcag caaccattaa
    10681 aaacaaaaaa ttctcattgc tatttgcaat agtaccatta taagctttca aaacggcatc
    10741 aagtccacct aaattttcat ttaaaggaat tttcactaaa gccatttctt tgtcaataaa
    10801 ttcttcactt tctatcactt tataagtagg aatgagctta tgaagttgtt tgactatctg
    10861 ctcaaaagtt ctttcatttc ctgaggtgac tatattaata cgagaaaatt ctttattttc
    10921 caaaggtgct actgtaagcg agtcaatatt ataacctctt cctgaaaaaa gtcctactat
    10981 acgagataaa accccatgct catttaaaac aattaccgat aaaacccttc tcattgtcta
    11041 tcctttgcct ttggtaaaat catattataa atcgcacctc ctgcaggcac cataggtaaa
    11101 acatcttcaa agcgatcaat ttttacattt aaaagagagg ttttatcact ttttaaagct
    11161 tggctaaaag cttgaatgaa ttcttctttg tttgaaattt cataaccttc acaaccaaaa
    11221 ccttgagcta ttttgataaa atcaggctga gtgcttaaat cagtttgtga aaaatgctct
    11281 ttataaaaca tactttgcca ttgtcttacc atacctaaaa aggcattatt taaaataata
    11341 tttatagttt ttataccata ctcataagca gtcataagct cttggatatt cattaaaacc
    11401 gatccatcgc ctacgaaatt aatcaccact tcttcaccca cagcaagctt tgcacccaaa
    11461 gcagcaggta aagaatatcc catagttcct tgccctccgc ttgttgcaag ttgtcttgga
    11521 taattaaaag gataaaactg tgccacccac atttgatgct gacccacatc agtaataatc
    11581 cttgcatctg gagccatttt tgcacattct tcaatcaccc attgcggttt taaaatctca
    11641 ttgctatctt cataagaaag cggataaagt tcattataac gctttaaagt ttcgtgccat
    11701 tctttaaaag ttgtgttgaa attttccttt ttaagctctt ctaaaagctc tttaagaact
    11761 tctttaatat ctcctactat aggataatgc gcattgataa tctttgaaat agaactagga
    11821 tcaatatcaa catgaactat agtcgcatgt ttagcaaatt cacttgtttt tcctgtaatc
    11881 ctatcatcaa atctcgctcc tacactcaca agcaaatcac actcacttaa agccatatta
    11941 gcagcatagc ttccatgcat gcctgccatt ttaagattaa aaacatcatc acttcttaaa
    12001 gttccaagcg ccatcaaagt ttcaactgct ggaatttttg taaattttat aagctctctg
    12061 atttgctcgc ttgcattaga actgatgcaa cctccaccta agtaaaacaa aggtcttttt
    12121 gcttctttta aaagctctgc aaatttttta atttgctttg agttaccctt ataaacgggc
    12181 ttataagtct tcatggaaat ttctttagag tattcccaaa gtcccaaagt tgcacttacg
    12241 tcttttggca catctatatg cacaggccca ggtctaccac ttcttgctat ataaaaagcc
    12301 tcttttaaaa tgcgtggaaa ctcttctata caagtaacta aataattatg ctttacacaa
    12361 ggtcttgaaa tgcctactgc atcaatttct tgaaaagcat ctgtaccaat aagagaattt
    12421 gccacctgcc ctgaaatcaa caccaaaggg atagaatcgc tataagccgt agctagacct
    12481 gtaatagtat ttgtaaaacc tggtccgctt gtaactatag ctacgcccac ttctccgctc
    12541 attcttgcgt aagcatcagc agcatgcaaa gccgcttgtt catgacgcac taaaatatgt
    12601 ttaaaatact tttgattgta aatttcatca taaatattaa gcgcagcgcc tccaggataa
    12661 ccaaaaacaa ttttaacatt ttcttctttt aaagcctcgc aaatcattgc cgaaccgctt
    12721 aactctttca taataacact ccaaaaaatt attgtaaaag ctctttaagt gctaaattaa
    12781 gtcttttgcc atcaacactc gcacctaatt ttattttagc ttctttcatt accaaacctt
    12841 gttcttttag tgaacttacg cccaattctt ctataagttg ttttaaggct aaagttaact
    12901 cctcatcact tagttgttta ggcagataaa tttcaaaaag acttatttca ttttgttctt
    12961 tttgtgctaa atcttcacga tttgccttaa gataaagttc gattgcgtct ttgcgttttt
    13021 tgatttcact tgcaatgatt ttataaattc tttcattatc caactctatt ctttcatcca
    13081 cttctatttg cttaaaagct gcatttagag ttcttaaact atctctttta aaatcatctt
    13141 tttgtttcat tgcctctttg atatcgttta aaatttgttc ttttaaagtc atttttttcc
    13201 tttttagtta aaattacaag ctttaagatt taaaccaaaa ccttctaagc ctatatagtc
    13261 tttatcacaa ctttgagata aaagtttaat ttcttctata ccaaaatatc ttaaaatctg
    13321 tgctcctata ccatagtttt tgtattgagt agtactggat ttttctcctt gcatgaaaac
    13381 tataacgcca ccattttcac taagaaattt gatttgctct aaaagttttg aaaatttatc
    13441 tgaagttaaa agctcaaaat cactaccact gatatgaaat ttaacatttt cacatttttt
    13501 gatatcttta aagcaaaaag ctatgtgttg ggtttgatta tgatcactaa agataaattt
    13561 ttctgcttta aagcctgcta aaacactttg acttttttct tcaagcttaa taaggctttc
    13621 atgttttagg cgatattcta taagatcgct tacggctatc atatttaaat catgtttttg
    13681 gcaaaaaatt tctagatctt ctcttcttgc catatctcca ttatctttta caatttcaca
    13741 aatcacacaa gcacctttta atcctgctaa tttacaaaga tcaaccgtgc cttctgtatg
    13801 acctgtgcgt tctaaaaccc cacctttttt tgcgattaaa ggattgatat gccctggtct
    13861 tacaaaatca ctcgccttag cattatcatc ggcaaaaatt tgtatagtca tatttctttc
    13921 ataggcgcta actcccgttg tagcatcttt tgcatctaca gttatagtaa aagcagtttc
    13981 gtggtttgaa gtatttttag gcaccattaa aggaagttca aatttttttg ctaaagcttc
    14041 atctaaggct acacaaacca caccacgagc ttcttttatc atgaaattta ctttttcttg
    14101 agtactaaat tgcgcaggaa agattaaatc gccttcattt tctctatctt ctgcatctac
    14161 cataacaagc atttttcctg cttgtaaatc cttaatcgct tgttctacgc taacaaattt
    14221 catttttatt tccttaaaat ttttaaaatt ataacttaaa ttgcttgaca aataaattaa
    14281 aattcattat aatcacactt ttaaaaaata tttattgggg tatcgccaag cggtaaggca
    14341 acaggttttg gtcctgtcat tcaggggttc gaatcccttt accccatcca cttcttattt
    14401 tatatttcaa agatcttata tgccgcgaag tagagcagtg gttagctcgt cgggctcata
    14461 acccgaaggt cgggagttca aatctcccct tcgcaaccag ttatggattt aaaataaatt
    14521 ttatttagat agattgttta aataactttt taaaatattc tccagccgtg ttttcagttc
    14581 tataggagct agaattttta tataggggat ccactgttta accaaatgta aaatttcatc
    14641 ttcataggaa acttgagtgc ttaaagtata gcttgtttca tcttcatcaa tgatttgaca
    14701 attgcttagt atttcttttc taaaaaaata ttccttagca tttttatcaa gctttaaaat
    14761 cacttctttg ctttctccaa gccagatatt aggatcattt tggatttgtt cttgaagttt
    14821 ttcattggga ataaaatttt catttttagt gcgaagtttt gaaattttat ctaaattaaa
    14881 atgttttaat ttatcgtttt catctcctaa aagataccaa attcctttgt aatttacgag
    14941 tttgtaaggt ttgatttggc gttctttttc cttgtagaaa aattcaatac attgtgtttg
    15001 agtatagcta cactaagatc tttaaaaagc tcataatcca ccttttgaaa accttcgttt
    15061 tttaccatca aaactttatt taccctatgg cttaaaagat cgactataaa gccttgatcg
    15121 agttttggat aaagctcagc aatgccgctt aaggtggcga aattctgtat gtctttaaag
    15181 cttaattttc ccaaagcaaa gctttctaaa acatatcttc cattttcttt tttaataggc
    15241 ataaaagtaa gtctttcgtt aagatctctt tgtatggttc ttgtatcgac attaaactct
    15301 tgtgcaagct cttgggcact tagactttct ccattgttaa attttgataa aatctgcacc
    15361 aagcgtatgc ttaatttgtc gtattctttc atgaaatttc cttgtgagtt aaaatgcttt
    15421 ttaacaaact tacgccttct atgcctaaaa tttcatttct aagttttttg acttcattta
    15481 aacttggggc ttttgcatga acggcttcat tgcggatttc ttgaatgaga gtaagacttt
    15541 ttgaaaaagg ataattgata aattgagtta aactttttcc taaatgacat tggatatttt
    15601 catgtctgag tagaaattta atacttccaa gattgggttt ttgggtaaaa aaatctttaa
    15661 gtataaaaga tttgctttgg acattataag ttaaatcata aaggctagga tctttcatac
    15721 aagcttttaa aagaactttt ttggcaaaag cataaatttc atattctaag gttttggagt
    15781 atttgactat aatgcttgta aaatcattta aaagatcgtt ttcgctttgc aaaagctcta
    15841 attctgcatg aatgatattg cttatgctat cagggtgcaa gagataaaaa atccttttgc
    15901 caaaaacaaa gcgtatgaaa ttttcttgca tggctaggta ttctttgctt ttatacacac
    15961 ttagataatg cttttcatct cctaaaaaat aagaacactc ttcttttaat ctcacaggca
    16021 aaggataggt gtaattatta ccatagatag cataagtgtg atcgtttggg gtgatgaaat
    16081 tggctaaaaa tttatctctt aaaagactaa aatcttccct gaccaattct cttaaatcac
    16141 tgatgataaa aaagtcttcc acttctaaat ttttttcttt ataataacta ggaatcaaac
    16201 tttcatcaac atttttagaa atttttatca ccttagcgac aaataaatta gcataatcgc
    16261 ttaaaaagag ttgcaagaaa ttttcttcat ttgtactttg gtaaatttct tctaaggaat
    16321 tttgcttttc ttgatcgttg agctttgatt tgattttgcc aaaggcaact tgggattttt
    16381 cttgcaaaat gcttaaatgt tgcttgatga catcttcttg atagtagggg ttataaagga
    16441 ttaaaaggtg gttcatgctt tgccttattt taggatttct ttgagatttt gcttgatttc
    16501 attaggattt tgctcgtatt cttgtatgag atcttttaaa atttcaaaca actcgttaaa
    16561 atcctgcggg tgttcttttt taaaatttat tatcaaatcc aaagttttgc aaatactact
    16621 tgcttgatct ttgctgtcat taaaagcatt ttttatatct aaaaccatac tgataatacg
    16681 agcactttgc atagggcttg aaatgcgttt aaataaaaag cctttaaacg catttgcaag
    16741 actaagagat gagaaaatct tagaaaacat ttcttttcct tgattagtgt tttggtttaa
    16801 aaatttcaaa caaagaactt aaaaatccac ttttttcgcc tttgcaatca ctacatataa
    16861 aatctaaagt atttaaagca tcgcttttag gtttagctaa aaaacttttg ccacatttta
    16921 tacatttttg aaattttgga ataggcttaa tcatgattta ttgcttattt ttctattgat
    16981 aaatttttaa attcaaaatc aagttttttt ccattttgca tatcttcaaa atgttcatct
    17041 aaataatcta tataaaattc tccgattttt ttagtggcgt tgtaggctac tgttgcgtta
    17101 atagctccac ctataaaatt gacaccagga ataaatttca taagacctgt agcaagcgtt
    17161 ttgactgcaa atcctgtaac acctgtagca agtaaagctg ttaaaatttt taaagcatca
    17221 tctttactgc ttaaattaag ctcgtaaatc atactaatat gataaatcat agcacgttga
    17281 ttggttgcaa taagaggaaa gtcagaaaaa ggtataggag ataatgctac agttgaagat
    17341 aatcctgcat aatatttaat cttatcttga gccttttctt tgcaagcttc tctttttaaa
    17401 tctttatcat attgttgttt tcttgcaaaa gcattttttt gtccttcatt taaaaaacaa
    17461 taagttttat tgactaactc tttaatacct aaaagttttt taacatttcc ttcatcatct
    17521 tcaattgcta tagctcttac tctttctatt ttttcatcat ctaattcaag ctctttttta
    17581 acaatatcct taaaactaca accattttca tctttatctt gttgagcttt agtgataacc
    17641 aatattgtac aaaatttttc agattttaaa aattttatta attctttttc ttgtggttct
    17701 attcttcgat ttgcttcaca aatacaaaac cataccaaat gaatttgatc tgaaggttct
    17761 tttgcttttt gatcttagat aaattgtttt aagttatcaa tacctttgtc atcttttatt
    17821 tcaagacctt tactatcata tatacaaagt ccatcttttt catatttgtt taaattagca
    17881 gtgattggag agccgctacc tgttttggct actttttcac caaatacggt attaattaaa
    17941 gtactttttc ctgcacctgt ttttccaagt attaaaacat ttaacttatt attttcttgt
    18001 tcttcttttt tgattttttc aaacgatgtc attatctcgt taaaaaaaga tccattgttg
    18061 aaattaaact cattatttgc catattttct ccttgttttt aaaattttta actttgtatt
    18121 ttatcaaatc ccccccccag tcaaggggga agtgaaattt ttaagtttta cgccatagca
    18181 ctagcgctaa aattgtgatt aaatatatag cataaaatat tatattataa ggataaggtt
    18241 gcatagaaag aaaaataagt atcgctatgc caacaaaaac cataaacgct ataaaataca
    18301 aaccacacat caacactatg gcaacaaagc cagctataag gcttaaaatt ccaagtatta
    18361 ttcccattgt ttatcccaca taggagaact ccacacagaa ggaaaaatat actgaggaaa
    18421 agtttgaaat tttgtttgca gataaaatct ctgtgttttt ctctccatac tttcacttat
    18481 catttttaca accgctaagt catttttttc gctttgtgtt tccaaaaaag cactcaagca
    18541 tttaaatttt ttagcatagt cgattacttt tatcatttga tctttataag acgacaaaag
    18601 aaattctgtt ttatgattat ttttagaggt aaaattttgc tcaaattcta aaaattcctt
    18661 agaattaaaa tattttgaaa agccgctata acactccata cattcgcaaa gaaattcttg
    18721 aatttgattt ttcttttgtt cgatttcaag ctctcttttg agtttgtatt cttcggtatt
    18781 gatcatatct ttacagcttg gaacaatagc atgtgtatca aattttcttt ctggcttgga
    18841 taatttttcg tataattttt ttatgccata tcctgtagct gtaagagcta tactaccaaa
    18901 tgcgatttgt tttaacattt tctctccttg ttttaaaata acaaagaaag tataaaacac
    18961 ccttgcgaca ggttgtgtcg taaaaaataa ctttaaaata ttaaaaactt attttattaa
    19021 agctagcctg taaattcagt agtttcatag cctataggtt tatctacaaa acaagatttt
    19081 tcttttaaaa atacaacttc tatagttcca acaggtccat ttctattttt tccaacaata
    19141 atttcagcat tttcttgcat aggatttggt ataaaaagcc tttgataagc tttgccttcg
    19201 gctttagctt tattctctct ttctttttct tcttgttctc tataaacctc atcgcgatat
    19261 acaaacaaaa tagcatccgc atcttgctct atagctccac tttctcgcaa atcactcatc
    19321 aaaggacgct tatttgccct ttgctctaag ccacgattaa gttgtgaaag tgcgataata
    19381 ggcatatcaa gctccctagc caaaagctta agtcctcttg aaatttcact aacttgcaaa
    19441 tgtctatcat taaaatttga attactcatc ataagcccta tatagtcaat cacacaaagt
    19501 cctatacttt catcttgaga ttttaaacgc cttaaaatag cccttacatc agcaatagtt
    19561 gcataaccac tatcgtaaat atataatttc ttttgactat aatcattgca agcatctcct
    19621 aaacgctccc attcatcatc gtttaaatct gcagttaaaa ttttttgcaa aggaatagaa
    19681 gttttagaag atagcattct ttgcatgatt tgagttgcag gcatttcaag agaaaataaa
    19741 gccacgcctt ttttttgtct taaaacctta tcaatgaaat ttaaacaaag agttgtcttt
    19801 cccatacctg gacgcgcggc gattattata agttcacccc ctttaaagcc ttttgtcatt
    19861 ttatttagac cttcaaaacc tgtatcaagc cctataatac ctttattttc taaagttttt
    19921 tgctttttaa attcttcaaa aagttctgat attaccatat caacatcttt aatatctcta
    19981 gaattcacac gatttgtaat gctaaaaatt tctttaccaa tttcatctgc gatttcactt
    20041 acagcacgat cttcattgat acgagttggc aaaagatgtg caaaactcaa gagttgtctt
    20101 tttacggact tttcgtgaag ttcatttaca taagcaggca aatctatcat agaaggagtg
    20161 gcaagaattt ctgctaaaat ttgctcatct atttttttat gttttcttaa aaaacttaca
    20221 gaaatgggct ctttgttatt actacaagct ataaccgctt taaaaatatc ttggtgagct
    20281 ttaagactaa aatcttttgg gctaatatca cctgctatac tagtataagc ttcttcactc
    20341 atgatacaac tgcttaaaat agctcgttct aaatccaagt cataatactc ttgctgcact
    20401 aaatttcctt ataaatataa attaattcta aaaattctat ctaaaaaaac ttaaattata
    20461 aaacttaatt tttttataaa tatttaatgt aatattagtt acaattataa atgtaattta
    20521 attacaaaca acaaacattt caaggagaac atttgaaaaa atatttattt tcctgtgttt
    20581 tagcctccat tttaacccaa tcagctacgg ctgtagaatt tcaagaaggt tttagtggaa
    20641 atttaagcat aggtgtgggt gcaagggata ttaaaagtaa tatttcaacc ttggcaaaca
    20701 gcgattatct aagcagtcac aatgctgata attcagactc ctctttcatt ccttttatcg
    20761 gtgcagaact ttactatggt aatcttataa ataatgatag aatttttatt aaaaactaca
    20821 atggaagaga tatcagcggt atagctttag gctacgaaag agcttattta gagcgtttta
    20881 gcacttcttt ttctgtaatt tcctctttaa gagaaaaagc ttatgcaaat ccttatgtaa
    20941 taggaaatag agaagaaact gatgttgata gatatggttt taaaatctct caactttatg
    21001 aaagtgattt tgggaaattt accacttcat atttatttag caaaaacaaa tatgataaag
    21061 acactatcgc acaaagctct ttaaaaaggg agggatatta tcacgaaatt gaattaaact
    21121 ataattatag cttattaaac ctaggactaa attatgatta caatgatgca gacggaaaag
    21181 ctcaaagcta ttcaagatat ggttttagta taggaacaaa tttggctttt gctaatgatt
    21241 acatcttcac tccaaattta aatcttagca aatatgaagc agtaggaact gatcctatct
    21301 tccacaaaaa acaagatggt aatatagtta agcttaatct aaaagttgtt aaaaatcaat
    21361 ttttgggtta taacggactt tatggttttg caaattatgg catagaaaaa agaaatagcg
    21421 atataggatt ttatgatgaa acctatcaaa ttgtcctaac tggtatagga tataaattct
    21481 aaaaattata aaaaagctcc tttgataaaa tttaaaaaag atctatctcc tataaagata
    21541 gatctttaaa aattctttta agaaaaatcc aagctaaaat caaaacacaa aattcagcaa
    21601 aaaatggact tagccatact ccatttaaac ccataaaaca agataaaaac aaaagaaaaa
    21661 acaaaggtat aaataaattt tgcgccaaac ttaaaaccaa agaaaagctt gccttattaa
    21721 aagctgtcaa aaaagaacca cttagaacat taaaccatgc aaaaaaataa ttaaaagcaa
    21781 aaagcatcaa agctgtataa gcaaaagttt taaattcttg attgttttct tttgtaaaaa
    21841 gcatgattaa attttctcca aatatcaata taagtactat agagaataaa gataaaaatc
    21901 cccctgcaaa aaataccact tttacaatag ctttgattct tgaaaaatct tttttagcat
    21961 agttgtaact aagcgcaggc tgcattgcat cacccatagc aataataagc attataataa
    22021 aactatcaat atataaaact atagaaaagg ctgccacggc ttgagtatca gaaattttta
    22081 ataaaacaaa atttgcaaaa atactatata aagatcctga aatattgcca aaaaactcac
    22141 tgcttccgtt ataaagaata tttttaaaaa tttttaaatt catgtatagg cttgaaattt
    22201 taagctctaa attttgaaac aagaaaggaa aaattccaaa aataccacct aaaacaagcc
    22261 ccaaacaagt tgcaagagca gctgaaaata agccccaacc caactcgact ataaaaatat
    22321 aatcaagcac tatattgctt aatgctataa tcacattcat taccatacta taagcagttt
    22381 ttccgcaaat tcttaaataa ttatccaaag caaaagaaag catagtaaag ggcgcaaaca
    22441 aagcaaaaac aaacatacat tctttagcca tcgttttaat ctcatcgcta acatttaaac
    22501 aatcaatcaa aacaggtcct aaaaaatact ctaaaattcc gataaaacaa gagattataa
    22561 agataatcaa catacttgag ctaaatatct ttctagctaa attcttcttg cctaaaccta
    22621 aatgcataga aatttgcact gctgatccta tggctatcat atcagccaaa gcaaaagaca
    22681 tcatgataaa gggaataatc aaggctagtg ccgctaaagc atcacttcct agatattttc
    22741 caacaaaaat tccatcaact atataataaa aagaaataaa agccatgctt ataacatttg
    22801 gcacggcaca ttttacaaaa agcctaaaag ggcttaaggt gctaaaaata cttgacataa
    22861 taatccttaa aatatttaaa attaaaaata ttttaaaccg ctaataaaat gccaaaagtc
    22921 ctagtatgta agaatttaaa taaagtaatt tcgcaataag ttta
//
LOCUS       DARGED010000013        20316 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.013, whole genome shotgun sequence.
ACCESSION   DARGED010000013 DARGED010000000
VERSION     DARGED010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20316
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.013"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            150..956
                     /gene="cdtA"
                     /locus_tag="SFZ84_000412"
     CDS             150..956
                     /gene="cdtA"
                     /locus_tag="SFZ84_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG8202563.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            953..1750
                     /gene="cdtB"
                     /locus_tag="SFZ84_000413"
     CDS             953..1750
                     /gene="cdtB"
                     /locus_tag="SFZ84_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG8202564.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            1761..2330
                     /gene="cdtC"
                     /locus_tag="SFZ84_000414"
     CDS             1761..2330
                     /gene="cdtC"
                     /locus_tag="SFZ84_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG8202565.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            2502..4184
                     /locus_tag="SFZ84_000415"
     CDS             2502..4184
                     /locus_tag="SFZ84_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG8202566.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITAGILSPSITGIGEAKPLSLALSVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            4308..5048
                     /locus_tag="SFZ84_000416"
     CDS             4308..5048
                     /locus_tag="SFZ84_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8202567.1"
                     /translation="MMKKVYFYATCLGSAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELAELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            5045..6484
                     /locus_tag="SFZ84_000417"
     CDS             5045..6484
                     /locus_tag="SFZ84_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG8202568.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            6477..7133
                     /locus_tag="SFZ84_000418"
     CDS             6477..7133
                     /locus_tag="SFZ84_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG8202569.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            7306..7602
                     /locus_tag="SFZ84_000419"
     CDS             7306..7602
                     /locus_tag="SFZ84_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEG8202570.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNKHKIMHKISFVICLILYKT"
     gene            7578..7928
                     /locus_tag="SFZ84_000420"
     CDS             7578..7928
                     /locus_tag="SFZ84_000420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202571.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVSFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(8170..9201)
                     /locus_tag="SFZ84_000421"
     CDS             complement(8170..9201)
                     /locus_tag="SFZ84_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG8202572.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(9280..10176)
                     /gene="sppA"
                     /locus_tag="SFZ84_000422"
     CDS             complement(9280..10176)
                     /gene="sppA"
                     /locus_tag="SFZ84_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG8202573.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIIIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDGLSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQAS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(10164..11393)
                     /locus_tag="SFZ84_000423"
     CDS             complement(10164..11393)
                     /locus_tag="SFZ84_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8202574.1"
                     /translation="MFIVTARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASQKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHLSLAHFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFAKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFSVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            11484..11963
                     /gene="aroQ"
                     /locus_tag="SFZ84_000424"
     CDS             11484..11963
                     /gene="aroQ"
                     /locus_tag="SFZ84_000424"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG8202575.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            11966..12439
                     /gene="folK"
                     /locus_tag="SFZ84_000425"
     CDS             11966..12439
                     /gene="folK"
                     /locus_tag="SFZ84_000425"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG8202576.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            12449..13903
                     /gene="flhF"
                     /locus_tag="SFZ84_000426"
     CDS             12449..13903
                     /gene="flhF"
                     /locus_tag="SFZ84_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG8202577.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            13896..14762
                     /gene="flhG"
                     /locus_tag="SFZ84_000427"
     CDS             13896..14762
                     /gene="flhG"
                     /locus_tag="SFZ84_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG8202578.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            14781..15137
                     /locus_tag="SFZ84_000428"
     CDS             14781..15137
                     /locus_tag="SFZ84_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202579.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            15118..15810
                     /locus_tag="SFZ84_000429"
     CDS             15118..15810
                     /locus_tag="SFZ84_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG8202580.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            15810..16889
                     /gene="fliM"
                     /locus_tag="SFZ84_000430"
     CDS             15810..16889
                     /gene="fliM"
                     /locus_tag="SFZ84_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG8202581.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            16886..17728
                     /gene="fliY"
                     /locus_tag="SFZ84_000431"
     CDS             16886..17728
                     /gene="fliY"
                     /locus_tag="SFZ84_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG8202582.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(17777..18373)
                     /locus_tag="SFZ84_000432"
     CDS             complement(17777..18373)
                     /locus_tag="SFZ84_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG8202583.1"
                     /translation="MEKILKILLFLSILVLSAKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQIN
                     RENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIWD
                     RYNKGGYALIVAPKKELKPFKLNTLKSLHFDFSPFSLF"
     gene            complement(18358..19211)
                     /locus_tag="SFZ84_000433"
                     /pseudo
     CDS             complement(18358..19211)
                     /locus_tag="SFZ84_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            19370..19858
                     /locus_tag="SFZ84_000434"
     CDS             19370..19858
                     /locus_tag="SFZ84_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202584.1"
                     /translation="MLGSLFTSSAFAGDFLAKVSNGALSDNSQGVKALNLDEMKQVKG
                     GYQVLTSKLGNSEYIALAIPDNTTTYKQLVAIYTVTGDNTFSNTFLGYTVKRNIAISS
                     SGKPYVLFNYGVALLDRQTGLHRVNSSEILNNNQVIKELTMKYKTQFESNLGGWTARA
                     RR"
     gene            19928..>20316
                     /locus_tag="SFZ84_000435"
     CDS             19928..>20316
                     /locus_tag="SFZ84_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202585.1"
                     /translation="MINGINSYSSYNYTNTFSNNTSNIKSSNVANDNSSLVSDKSRAV
                     SKMLGYGVDKDGFFTSDFNEAAGLPKDYKIYAKDIENFVNIQTKSLLSSYINIDIAKS
                     IGNAYKVFSQLLNDELNNKINFTKEDLV"
BASE COUNT         7349 a         3091 c         3270 g         6606 t
ORIGIN      
        1 tttgagagat gctaaaatat aagtgtttaa gatacatgta aattctacct ttaaaaacaa
       61 caaaataaaa catttttaaa aagcggaaaa ttataatgaa atttatgtta ttattttctt
      121 aaaaatttaa atacatatca aggtttttaa tgcaaaaaat tatagttttt attttatgtt
      181 gttttatgac tttttttctt tatgcatgtt cttctaaatt tgaaaatgta aatcctttgg
      241 ggcgttcatt tggcgaattt gaagatactg atcctttaaa actaggactt gaacctactt
      301 ttcctaccaa tcaagaaatt ccaagtttaa ttagcggtgc tgatttagta cctattactc
      361 ctattacccc acctttaact agaacaagca atagtgccaa caataatgca gtaaatggga
      421 tcaatcctcg ctttaaagac gaagctttta atgatgtttt aatttttgaa aatcgccctg
      481 cggtttctga ttttttaacc attttaggcc ctagcggagc agctttaacg gtttgggctt
      541 tagcacaagg aaattggatt tggggctata ctttaatcga tagtaaagga tttggcgatg
      601 ctagagtttg gcaacttttg ctttatccta atgattttgc aatgattaaa aatgccaaaa
      661 ccaatacttg tcttaatgct tatggtaatg gaattgtcca ttatccttgc gatgcaagca
      721 atcacgcaca aatgtggaaa cttatcccta tgagcaatac agcggttcaa attaaaaatt
      781 taggaaatgg aaaatgcata caagcaccta ttacaaatct ttatggtgat tttcacaagg
      841 tttttaaaat ttttaccgta gagtgtgcaa aaaaagataa ttttgatcaa caatggtttt
      901 taactactcc gccttttact gcaaaacctt tatatcgcca aggagaggta cgatgaaaaa
      961 aattatatgt ttatttttat cttttaacct tgcttttgca aatttagaaa attttaatgt
     1021 tggcacttgg aatttgcaag gctcatccgc agccacagaa agcaaatgga gtgttagcgt
     1081 aagacaactt gtaagtggag caaacccctt agatatctta atgatacaag aagcaggaac
     1141 tttaccaaga acagccactc caacaggacg ccatgtgcaa caaggtggaa cacctattga
     1201 tgaatatgag tggaatttag gaactctttc aaggcctgat agggttttta tttattattc
     1261 tcgcgttgat gtaggagcta atcgtgtaaa tttagctata gtttcaagaa tgcaagctga
     1321 agaagtgatt gttttacctc cacctactac agtttcaaga cccattatag gaattcgcaa
     1381 tggaaatgat gcttttttca atatccatgc tttagctaat ggaggaacag atgtaggagc
     1441 aattatcaca gctgtagatg cacattttgc aaatatgcct caagttaact ggatgatagc
     1501 aggggatttt aaccgtgatc cttctactat aacaagtaca gtggatagag aattagcaaa
     1561 tagaattaga gtggtttttc caactagcgc aactcaagca agcggaggga ctcttgatta
     1621 tgcaattaca ggaaattcaa atagacaaca aacctatact ccaccgcttt tagctgcaat
     1681 tttaatgctt gcaagtttaa gatctcatat agtttcagat cattttccag taaattttag
     1741 aaaattttag gacatttaat atgaaaaaaa ttattacttt gttttttatg tttataactt
     1801 tagcctttgc aactcctact ggagatttga aagattttac cgaaatggtt tctataagaa
     1861 gcttagaaac gggaattttt ttaagcgcct ttagggatac ctcaaaagat cctattgatc
     1921 aaaattggaa tattaaagaa attgttttaa gcgatgagtt aaaacaaaaa gataaattag
     1981 ctgatgaact tccttttggt tatgtgcaat ttacaaatcc aaaagaaagc gatctttgtt
     2041 tagccatctt agaagatgga acctttggag caaaatcttg tcaagatgat ctaaaagatg
     2101 gtaaattaga aactgtattt tctataatgc caacaacaac ttcagctgtg caaattcgtt
     2161 ctttagtttt ggaatctgat gaatgtatag taactttttt taatccaaat attcctatac
     2221 aaaaacgctt tggaatagcc ccttgcaccc tagatcctat tttttttgct gaagtaaatg
     2281 aactaatgat tataacccca cctttaacag ctgctacccc tttagaataa gatttttatc
     2341 ttgttctatt tttatattta tttaatattt atgatattac taaaatacac aaaataatta
     2401 ataataatac aatgtaattt accttactct ataattcttt tattttaatt taattttttg
     2461 ttacaataaa tttatacata ataattatca aggaggaaaa attggaacaa attttaacat
     2521 ggcaacaaat ttatgaccct ttttcaaaca tttggctaag tgctttagtg gcatttttac
     2581 ctatactatg ttttttagtt tgtttggttg ttttaaaact taaaggctat caagcaggtt
     2641 ttttaactgt tatacttgct actttagtag ctttatttgc ctataaaatg ccttggaatt
     2701 tagtgggtgc aagttttatt caaggcttta caaatggtat gtggcctata gcttggatta
     2761 tcatcgcggc aatctttctt tacaaacttt ctatcaagtc aggttctttt gaaatcatta
     2821 aaaaaagcgt gatgagcatt actccagatc atagaattca agtgatttta ataggttttt
     2881 gttttggttc atttttagag ggtgctatag gttttggtgg ccctgtggct ataaccgctg
     2941 cacttttagt aggacttggc ttgcgtcctt tacaagctgc agggctttgt cttatcgcaa
     3001 ataccgctcc tgttgctttt ggtgcggtgg gaattcctat tattgctatg gcaaatcttg
     3061 tcggcataga acagcattca gtttctgcca tggtaggtag aatgctagtt cctttaagcc
     3121 ttactatacc ttttttcata gtttttttaa tggatggatt taaaggtatt aaagaaactt
     3181 ttccagctat tttagttgcg gcgctaagtt ttacaactac tcaattttta agctcaaatc
     3241 acctaggagc ggaattacct gatattattt cagctgtggt ttctttagca gttacgactg
     3301 tatttttgaa attttggaaa ccaaaaaata tttttagatt tgacaatgaa agcaatttca
     3361 ctcaagataa caccttaagt tttaatcaaa ttttaaaagc ttggtcacct tttattttac
     3421 tcattgtttg tattatcatt tggacacaac cttggtttaa agctctcttt gataaggacg
     3481 gaattttaag ctatacaagt attactttac aatttagcaa tatcacagct ggaattttaa
     3541 gcccttctat cacaggcata ggagaagcta agcctttatc tttggccttg agcgtagatt
     3601 taatcaatgg aaaaaccgta gctcaagcag gaacagcgat tttacttgcc gcttttctaa
     3661 ctatagctat tttaaaaatc aaagccgaag atgctgcaga atgcttttgg gttaccttaa
     3721 aagaaatggc tataccttgt atcaccatag gtttggttgt ggcctttgct tttatctcta
     3781 aaaatagtgg tatgagcact actttaggac ttgcttttgc acacacaggt gatgcttttt
     3841 ctttcttttc accaatcatt ggctggatag gggtattttt aacaggctct gatacaagtg
     3901 ctaatttact ttttggaacc ttgcaacaag taagcgctca aaaactaggt attagcgaag
     3961 ctttattttt agcagctaat tcagtaggtg gggttgttgg aaagatgatc agtccacaaa
     4021 gcattgctat agcttgtgca gcggttggac ttgtgggaaa agaatctgat cttttcaaat
     4081 tcacattaaa atattctgta gcttttatta ttttaatagg aatttggact tgcattatag
     4141 cttttttctt acaaggaatc atccctgaag ttatagtgaa ataattaaaa aaatttaagt
     4201 tttatttcaa caaatattcg tttttagaat atttgttaga aattttactt tgcttttatt
     4261 tttacaggat tagaatattt atcctaaatt atcctaaaag gagaaaaatg atgaaaaaag
     4321 tgtattttta cgccacatgc ttaggaagtg ccgctatgca acaaagcgtt ttaaatgcga
     4381 taaaactttt aaggcgtgag ggtattgaag tgattttcaa aaaaaatcaa acctgttgcg
     4441 cccaaccttc ttttaactca ggttatttcg atgaaagtcg tgagatcgct ttatataatg
     4501 tagatttatt tgataaagat tatcccatcg ttgtacccag tggttcttgt gcgggtatga
     4561 tgagtcatga ctataaagag ctttttaaaa acagacctga attttccaaa ataaaaactt
     4621 ttagctctag agtgatagaa ctttcacaat accttgatga agttttaaaa gtagattatg
     4681 aagataaagg tgcacctata aaagtaactt ggcattctaa ttgccatgct ttaagagtgc
     4741 aaaaaagcat acaagcgagt aaaaatctta tcaaaaaact aaaaaacgta gaattagcag
     4801 aacttcaata cgaagaagaa tgctgtggtt ttggaggaac cttttcagta aaagagcctg
     4861 aaatttcaaa tgctatggta agaagcaaaa tcaaagatat acaaaatagc ggtgcaaaat
     4921 atctcatcag tggtgatgga ggttgtcttt taaatataga tggcacaatg aaaagaatgg
     4981 gtttggatat aaaaggcata catttatatg actttttact taaacgctta gaaggagaga
     5041 gactatgagt caaaaaattc ctcacgaaca aatcgttcaa attaaactca atgacaaaca
     5101 aatgcaagaa aatttaatga ctgccatgca tactttgcaa aaaaatagac tcaatgttat
     5161 tgatgctaga tttaaagact ggcagggttt aagagctaaa gctaagcaag ctaaaaataa
     5221 tgccttaatg agcttagaag aaagactttt agaatttgaa aaaaatgcta caaaaaatgg
     5281 cattaaggtg cattgggcaa gtagtgatga agatgcctgt gaaatcgtct atgaaatcat
     5341 gaaagaaaaa aatatcacca agcttttaaa aggcaagtct atggcaagtg aagaaatagg
     5401 cctaaatcac tacctagaaa aaaaaggttt aaaagctata gaaaccgatc ttggagagct
     5461 tattttacag cttaatgaag aacccccttt acacatagtt gtacctgcca tacatagaaa
     5521 ccgccatgaa atcggagaaa ttttcaaaga aaaattagga gcaaatttag aaaacgatga
     5581 acccgaaagt ttaaatgcgg tggctagaga acatttaaga aaagattttg aaggcttaaa
     5641 acttggactt agtggggtca attttgccat gtcaagagaa ggagcttttt ggcttataga
     5701 aaatgaagga aatggtagaa tgtgcactac agcacctgat attcatatcg cactttgtgg
     5761 tatagaaaaa gtcatggaaa gctttgaaga tgcggctact atggtttctt tacttactcc
     5821 ttcagccaca ggacaattta taccaactta taacaatatc attacaggcc ctagaaaaaa
     5881 tggagattta gatggtccta aagaagtaca tgtgatttta tttgatcaca atcgctctaa
     5941 aatgttagct catgaggatt attatgaggc tttgcgttgt attcgatgcg gggcttgtat
     6001 gaatttttgc cctgtttatg atcaaatcgg cggacatgct tatcaaacca cttatccagg
     6061 acctatagga gaagtaatca gtcctaatat ttttggtata gatcatacag gagatatttt
     6121 gaatttctgt tcactttgtg ggcgttgttc tgaagtttgt ccagtccaaa ttcctttggc
     6181 tgatcttatt cgcaaattaa gatgtgataa aataggacaa ggtaaaaatc cacctttagg
     6241 agcaaataat gttcatcaca atgccctaga agcctttgct tttaaacaat ttaaaaatat
     6301 cgcaaccaat ggcgataaat ggcgtttttc actttcaaaa gcacattatt tcaactggac
     6361 ggtacaaaat ttcgcaagca ttttgcctgt gattaaaaaa tggtacgctt ttaaagaatt
     6421 acctcaaatt aaaatggatc tttataaaga agtgcaaaaa ctagaaggag taagctatga
     6481 gtaaaatcga tgaaatttca agcaaaagca aagcaaatat tttagaacat cttaaaaaag
     6541 cttacaaaga aacaactttc acacgcattg aaagtataga tcctgtagaa catatccaga
     6601 caacccaaga tatgcttaca gaaatgaagc aaaaaatgag cgataacaaa tacatcgttg
     6661 aaaatgctac aaaagatacc ttagaagaaa aaatcaatga aattgtcgca aaatatggct
     6721 ttaaaagtat gatttatgga gcggatttaa atttaaattt agaacaaatc aaagcagaaa
     6781 aaaagatttg ctttgataaa gaaatcgaaa atttaagatc tgaagttttt catagtgatt
     6841 tttccatcat tcacgcaaga gcaggggtaa gctctcacgg agttgcactt ataccttcaa
     6901 gtaaaaccca acctagaatg ctaagccttg cacctaaact ttgcatagta ttgcttaaaa
     6961 aagaaaatgt tgttaaaagt cttagcgaag ctttaaattt agtaaaaaaa gaaaatgaaa
     7021 ttttacctac taatatctta tttatagcag ggccttcaag aacagcagat atagaactta
     7081 tcactgtttt tggtgttcat gggccacaaa ttgcacatat tattatttac tgattctata
     7141 ctagaatcag taagtcttaa tttttaatat taattatata tattttttat attatacaaa
     7201 tataaataaa ataaataatt tctaattaat aatattttaa taaaatatta tgtaatattt
     7261 cactcaaata tattaaatta attttaaata caaaaattaa agaaggtgct tttagataaa
     7321 ctaattccaa cttggaatga aaaatacagt attcatgaca caatgattga cattcaacac
     7381 caaaaacttt gtgaacttgc aagcaaggtt gaaagtgctg tttataaatt tgtaaaacga
     7441 gaagaactca aagaaatttt aacagaactt tttaactata tgaaagaaca ttttagtaat
     7501 gaagaagatt atatgcaaga aattcattat ccttatttaa ataaacacaa aatcatgcat
     7561 aaaatatcat tcgtgatatg tcttatctta tacaaaacat aaaaaccact aatgatttaa
     7621 aagagaagct ttacacagtt tctaaaaaat ggcttttaga acatatactc tataaagatg
     7681 tgaaagttga acaatacaga agatcttctt taacttctga agatgatggg gaagtaagct
     7741 ttgaagaagt caaagaagaa aaagatgatg aaaatacagt ttatctttat acatgcgaat
     7801 gcgtagaaca aatgcatgat gtatcatttg gaattcatca aaaaattcaa cttaagggcg
     7861 taaaatttaa atgtaaaaaa tgcaaagaag ccatacagtt ttataaaaaa tattcagaaa
     7921 atttctaatt aactatttat gcgttaaaat aataaataaa gtataagtta gacaaagaag
     7981 gaaatttaag gataaaaaaa taaaatattt tattttggat aaatttgact attcctatcc
     8041 tatactaacc aaagatacaa aatgctcatt ttgtgaaaat tttttctcga tagaatatag
     8101 ctcaaactta aaaacaatag aaaaagaatg tccattttac aataataaaa tggacattaa
     8161 gcttaaagac taagccttag ttttacttac aatattaata atatttgaag ctacttcatc
     8221 agcaagttct aaatgagaag taaaacctac acaagaacaa ttaatctcgc ctaaaacata
     8281 tttatcattg cccttttcat cagtatctaa aataaaatca gccgtccaaa tcaatggtaa
     8341 gtcgtaattg cctaattttt cccttacctt aggaagctcg cctaaaaaca tatccaccaa
     8401 agttttccaa tcttctggct tatcatagcg atattttgcc ccactaaaaa gcgtagcaga
     8461 aaaagcatca gcatcttcgg ctggtttttt atgcactaca tttacagggg tgttataaag
     8521 cattaaaagt ctgatttcac cttctttaat gcgcggtaaa aaagtcatat ccacaagcat
     8581 accattatca cctatgatat attgctcgca aaaatccata aattccccaa gctctctatg
     8641 ttctacatga ttatccttag cttctgtaca tttgattttt gtgtttaaag gcaaactatc
     8701 tccactaaca ttaccctcta cactcacacg ccaaattccc tctcctgtag agccacgatt
     8761 ttgttttaaa accctttcac ctttagccaa actttttgga aaattttctt taaaagtctt
     8821 aatatcatag taagcataag tatcgcttgg aacaagatca gtatctgcta attttgtaag
     8881 tgcatcttta gcaccataac ctatcatagc atcaggatga ggcataccta caagcttatc
     8941 ggcacaaagt tttcttaaca tatcaaaata ctcattttct tctttaagat tgccaggatt
     9001 gatgcgagaa acataaccat caaaattttc ttttacatat ttgtaaattt catctttttt
     9061 acccacttca aaaaaaatca cctcagcatt ccaaccctta gcttttaagg catttaccat
     9121 aggcatagta tcttttctat aaccatcttc acctttatca ctcccacctt taacttcgaa
     9181 aaaaacaata ttttttttca ttattttact ccttatctaa gatataaata attattgcat
     9241 aaaaatatta caaaaattaa ataaaaatat ttatatattt tatctagcgt ttataaaact
     9301 gctattagtc ttataagcga tttcgattaa gcttttactt atcaagcttg atgcttgtcc
     9361 ttctaggcgg ttaagaaatt tatcaatctt atcttcttct ttccaaacag gatttgaaac
     9421 attagcaagt ttttcaagct cctttttagc attttcataa ttactaagcc catctataag
     9481 accaagctcc ttagccttgg cagctaaaaa cactcttgca tttgcccatt gatctttttt
     9541 gttaagatct aatgctcttt ccttggcaac aaaacctgta aaaagatcat aactttgatc
     9601 aattaaaccc tgtaaaaaat ttctttcatt ctcattccaa gctcttgcaa aagttccagc
     9661 acttttaaat tcacccgctt gaatagtttg ttctttaata ccgagtttat tagccaatcc
     9721 acttaaatca gctccttgca taatcacacc gatagagcct ataaaacttg ccggattggc
     9781 taaaatttta tttgctccaa ctcctgctaa ataacttcca cttgccatag ttccgcttgc
     9841 ataaacaagc acaggctttt taatttttaa atcctttata gctagagcta gttccatact
     9901 aggagcaaaa gctccaccag gagagtctat aacaaaaagc actcctttga tattgctatc
     9961 atttttagca ttgataattt tttccaaaac cgcagagctg tcaaaaattt caccctttaa
    10021 atcaatgcgt tctaaatttg caagattaga gcttgaattt gcactaggta ttaaaatcca
    10081 tataataatc aacaataaaa caaaggtttt aaaataagta ttgataaatt ttataccgca
    10141 tcctaaagcc ttaaaaaatg attttaaaat ttgcattctt ttccttttat aaataattta
    10201 tctacttcct tagcatttaa aataaactgc aaaggagctt gctttttatc acattctcct
    10261 agctcaaata cgctaaaatc agcaatttta ccttttttaa gctctcctaa atttaaattt
    10321 aaagcccttg caggataaag tgttaccatt tgcaaaagct tagaggctaa ctccaataaa
    10381 tcaaaattct tatgtataag caaattcgcg cgcatttcat caagtaagga caatgaaata
    10441 tttgagctaa gtccatcggt tcctaaatgg atatttaatc cactttttaa agccgttttt
    10501 aaatctaagc ttttttgact taaaaggcga tttgaaaatg cacaatgtgt aatagaatgt
    10561 aaatttttat ctaaccattc atattctttt agataaacac aatgcgtaaa aagagtcctt
    10621 actcctttaa agagtttagc aaaatccttt ggtgtataaa gaggcttagg atgaagtgtg
    10681 aaattttcaa gccatttttt aaaaccccct ttagactctc taagccagat attttcagcc
    10741 ttactttcta aaaaatgcgt actaactagt aaattttgct ttttagctaa atcaagagca
    10801 aaatgagcca aactaagatg agttgaataa ggagaatgaa tcgaaattgc tgggataaaa
    10861 aaatcatttt taaatttcaa agaattttca aatcttttta aaaattcttg ttttttatct
    10921 tcaacttgat tttcatttgt acccaaaatt tcattaaaaa atactatacg catacccttt
    10981 tgactagcct ttaaacaagg atctaaatca ctcccaaaac ttgaaatttc acctatagtg
    11041 cctataccgc ttttttgcat ttttttaatg ctttgaagta ttaattcttc tttggcctgt
    11101 gcatttaaca tggaacgaga atttataaca cttttaagcc aaattaaaaa ttctccaaaa
    11161 tgtaaagttg ttgaatttgc actaaattct aagtgtgtgt gaggatttat aaaagcaggt
    11221 aaaataaccg aatttttagg tgttttgatg attttagcct tgggatattt ttttcttaaa
    11281 ttatccaatt cacccaattc taaaatttta tcttcaaaaa caaaggcttg attttctagt
    11341 atcgtaaaat cttcatcgca taaaaaaaga tatcttgcag taactataaa cacgattttc
    11401 ctttcaaaaa ttacattgta gcaaaaattt atttttaaaa tgttataata aaaggttaaa
    11461 aataaatttt taaggttaaa tccatgaaaa taatgattat ccaaggccca aatgttaata
    11521 tgcttggcgt aagagaagtg ggaatttatg gtgctatgaa aatggaagaa attcatgagc
    11581 aaatgaaact tgcagcatcg caaaacaatg tagaacttga ctttttccaa agtaattttg
    11641 aaggtgaaat cgtagataaa attcaagaat gccttggaac agttgatgga attattatca
    11701 acgcagcagg ctatactcac acttcagtag ctattcgcga tgctattgca gcagtagctt
    11761 tgcctacaat tgaagtacat attagcaatg tttatcgcag agaagaattt cgtcaaaaaa
    11821 gtcttatagc gcctgtatgt tctggaacta ttgttggttt tggtcctttt ggctatcact
    11881 tggctttaat gggtataatt caaatttgcg aacaaataaa aaatttgcgc gcaatgcaac
    11941 aagcacaaca aacgaataaa taataatgct aaaaattcaa ggagtaaaac actttgaaaa
    12001 aagtcgtttt tttccttttt ttagtcaaaa tatacgatct tttaaatatt tagctcttat
    12061 aggcttagga agcaatatag agcccgaaaa aaaaagattt gatatgcttt ttcgagtaat
    12121 gatggatgat aaaagattta aaattttatc cacatctcct atgttgataa atgaagcctt
    12181 tggttttaaa gagcaaaaag attttaccaa tgctgttatg ttgatacaaa ctaatttgca
    12241 tgcacgagca cttttgaaag ttttacttta ctatgaagta aaatttaaac gcaagagaac
    12301 tttcaaaaac gctcctagaa cgcttgattt agatctttta tacttttcac aaaaagtcaa
    12361 gcgtgataag tggtgtgagg tgcctcataa aggggctaaa gaaagagtga gtgtaatttt
    12421 gcctttaggc atgatataag gaatataaat gggacaactt atacatactt ttaccgttga
    12481 agatacagaa caaattatac ccaaagtaaa agaagattac ggagataaag ctttaattat
    12541 aacaaataaa caaattcgtc ctaaaacctt aaatcgcagt gcgctttatg aggttatggt
    12601 agccatagaa gaaagcgact atgaagaaca cttaaaaaaa caaggaaaat ctttacctgc
    12661 aaaaaaaagc tcgccaaaac catcctctac ctctcttgca gaagaaaaaa ttagatctca
    12721 aatccctcaa gaagatgaag atgtagtctt ggatttctca aacactcgct taaatacaaa
    12781 tttaaacact gtaaaaaaca atgacttagc taaaaaaacc tatcaagatt ttccacaaaa
    12841 caaaatcaac cctcatcaaa ataagactct aggctttgat gatttcaaag aaaaactaag
    12901 tgaagttagc aatgaaattt ctaaagtcac aaacacacct ttagaaaatt acacccctaa
    12961 tccaaattat aataaaaaaa tagaaaattt tgaaaagcaa tttgaaaaac aaatcaacaa
    13021 gcttaatgat aaaatagatc ttcttgcaga tatgatgtgg gacgataaag ctgaagctag
    13081 aaaaaatctt atgatacctc ctgaatttgc aagtatttat aaacaagcca aagaaagtgg
    13141 aatgcttgaa aatcatctag aagcgattat gaaagcaact atagaaaata tgccagctgc
    13201 tatgaaaacc aacaaagatg cggttcaaag atattttcac tcacttttaa gaaatatctt
    13261 gccttgtcgt gttgaaagcg atataaaaaa acaaaaaatc atgatgctag taggcccaac
    13321 aggagtcgga aaaacaacaa ccttagctaa gttagctttt cgctatgctt atggagataa
    13381 gcgttataaa acaggtatta ttacgcttga tacttataga atcggtgcag ttgagcaact
    13441 ttttcagtat gcaaaaatga tgaaacttcc tattattgat agcatagaac caaaggattt
    13501 agatgaagcg ataaaaagct taaataattg cgaagtaatt ttagttgata ctataggaaa
    13561 ttcacaatac gatcaaagca aacttgctaa aactaaagaa tttttaatgc actcaaatgc
    13621 agaaattgat gtaaatttag tggtttctgc aaacaccaaa catgaagatt taatggaaat
    13681 ttataaaaat ttttcattct taaatattga tactttgatt attactaaat ttgatgaaac
    13741 aaaggttttt ggaaatatct tctctcttgt ttatgaaaca aatattcctc taagcttttt
    13801 ctctatagga caagaagtgc cagatgattt agaagtagcc aatagtgatt ttctagttca
    13861 ttgtatttta gaagggttta acaaaggaaa aaataatgaa taaccaagca aataaacttc
    13921 gcaatctcat gagtcaaaat ggaaccaaaa aatcccaaaa cactcatttt atagctatta
    13981 caagtggaaa aggtggcgtt ggaaaaagta cgattagcgc gaatctagcc aatgttttag
    14041 caaataatgg ctataaagtt gggctttttg atgctgatat tggcttggca aatttggatg
    14101 tcattttaaa tgtacgcata caaaaaaatc tcttgcatgt tttacgcgga gaatgctcct
    14161 tggaagacat tttaatagaa gttaagccaa atttatggct catcccaggc gaaagtggag
    14221 atgagatttt aaaatataat gataaaaata tttacgagag atttttaaat caagcaagta
    14281 ttttagatga acttgatttt cttattatcg acacaggcgc gggtattggt ggaaatattt
    14341 taaatttttt agaaatggct gatgaagtta tagtagtaac tgttcctgat cctgcagcaa
    14401 tcactgatgc gtatgcaacc ataaaaacaa cttctaagac aaaagaaaat ttactaatgc
    14461 tctttaatgt tgtaaaaaat gaaaatgaag ctttaaaagt ttttgaaaat attaaaaaag
    14521 ttgcagatgc aaacattaaa aatcctttaa atttagaatt cttaggtcat ttaagcgctt
    14581 ctaaagatgt aagtggtagt attaaaaaaa gaactttatt tagcgatgaa aacacagcct
    14641 caagtgatga gattaaagcc ctagcttcca agcttttata tagattggaa cggaaagtgc
    14701 ttgataatgt ttcaaatcgt agtttttcaa gtttttttag aaaaattatt gaaagatttt
    14761 agcaataaag agaagagatt atgaggccag aaaattacgt agcatttttc actgtttgtg
    14821 gattttttat aggacttgca tttagcatta ttagtataga tgaagccttt gatatactga
    14881 tttttacttg ttttattact tttatgtttt atgtttttgt tcatattgct attatgaatt
    14941 ttatagatgt aaagaaaatt agtggcagaa tctttaataa acacgattat gaaaaaacta
    15001 gcaataatat tatcaacgat ttagttattc gtgaaaagaa aatggatata attttagaaa
    15061 agctcaatga agaaagagaa gagctaaaga aaaatgaatt caaagaaaga cgaagaaatg
    15121 ctaaaagagc cgcctaaagc ttatgcacaa atgctaaaga aagagcaaga tgagcttgtg
    15181 ctttcttaca tgccagctct gcgtgctatg gcttttagac taaaagaacg cttgccttca
    15241 agtatagatg ttaatgatct tattagcata ggcgttgaag aaatgataaa gctttcacgc
    15301 cgttacgata aagaacaaaa tgataacttc tggggttttg caagaaaaag agttaatggc
    15361 tctatgcttg attatcttag aagtcttgat gtaatgagtc gaaataatcg taaaattatt
    15421 aaagatattg atgcaatcat ggatgaatat tttttagaac atgaatgcga acctgatgat
    15481 gagtatctag ccaaaaaact tgatttagat gtagaaaaaa tcaaagaagt aagaacagct
    15541 catgctatta gctataccct gcccattgat gagcaaatcg aactttataa tgaagacaat
    15601 actttagaaa aaattgaaaa agaagaactt ttagaaaaaa ttcacgaagt gctagatgat
    15661 cttaaagagc gcgatcagtt aattattcag ctttattatt atgaagaatt aagcctaaaa
    15721 gaaatcagtg aaattttaca aatcagtgaa agcagaattt cacaaattca caaaaaactt
    15781 cttaaaaaac ttagagaaag gctagtgtaa tggctgagat actctcccaa gaagaaattg
    15841 atgctctact tgaagttgtc gatgataaca ccgacacacc catagcctca aattcaaaag
    15901 atgaaaaaga tgaaagaaat atcgttgtat atgattttaa gcgtcccaac agagtttcaa
    15961 aagaacaact taggacgatt aaaggcatac atgataaatt agcaagaaat ttagcctctc
    16021 aaatttcatc gatgatgaga agtattgttg aaactaaact tcattcagtc gatcagatga
    16081 cttatggaga gtttttaatg tctttgccaa gcccaacaag ttttaatgtt ttttctatca
    16141 aacctttaga tggaaactgt gttttagaaa tcaatccaag catagctttt cctatgatag
    16201 acaggctttt aggtggtcaa ggcgatagct atgaagcttc gcgtgagctt acggatattg
    16261 agcttaattt acttgattct attttgcgta tcattatgca aagacttaaa gaaagctggg
    16321 ctaccgtaac tgaaatttat cctagtatag aagctaaaga atcaagtcca aatgttgtgc
    16381 aaatcgtatc tcaaaatgag attgttatca tggtagtaat ggaaatcatc ataggaaatt
    16441 caagcggaat ggtaaatatc tgctatcctg tagtacattt agaaagtata ttaagccgtt
    16501 tagcaaaccg tgatattatg atgggtgaaa cctcagccaa aaaatcacgt aacaaagagc
    16561 ttaaaacttt aatcggtcgt gctgaagtgg tatatgaggc aattttagga aaaaccttaa
    16621 ttaatgttca tgaattttta gaacttaaac aaggcgatat tttaaggctt gatagagaag
    16681 cagacgataa agctatagta agtatcgata aaaaagatgt tttcttagca caaattggat
    16741 tgcatcgttt tagaaaatct attaaaattt tagaacttat acgcacagat aaagatgaaa
    16801 tcaaagaaat tttggaaaaa tacgaagaag agcgtaaagc taaagccagt gtttatgatg
    16861 agcctgaaga ggaggatgaa gaaatatgat caatgatttt ttaaaaatgt ttacaaatga
    16921 atgcatcagc accattgaag gtttaacagg aaaaagtgct gaatttagcg aatataaaga
    16981 atttgatgtc aatacaagcg atactttaaa agcaccttta gtgtatgcta tatttaatat
    17041 agcaaatggt ggaaaaatag gaattttagc tggtgctgtt ttaatgagtg ctattggtga
    17101 atggatgatg ggtgaagaag agatcaccaa aaacgataaa ctaggtcctg atgaaatgga
    17161 tgcagctaaa gaagccatcc aaaatatcat ttcagcattt tctacaacct taggagccca
    17221 aaaagacatt ccaaaaatgg attttagcat agaatcttgt gaatttgtgc ctgaaagcgt
    17281 agattttaaa gattttaaaa aattattttt atatgatgta aaaataggcg atttagaaga
    17341 acaagtttct ttagccatgg atcaaacact ccataacatc ctaagcggga aacctgctga
    17401 aacaggaaat acaagcactg attctaatca caatactgaa gaaaaagcga taatgcttag
    17461 cgaagagctt aaaaatatca atcttatcat ggatgtgcgt ttgcctgttc gtgtgcgtat
    17521 aggcaataaa aaaatgcttt taaaagatgt tttaactatg gatataggtt cagttgtgga
    17581 gcttaatcaa cttgcaaacg atccgcttga aattttaatt ggggataaaa gaattgctta
    17641 tggcgaggta gtaattgtcg atggtaactt cggcgttcaa attacagaaa ttggttctaa
    17701 aaaagaaaga ttagaacaac taagataaaa agttttagcc tacaaattaa gaataataaa
    17761 tataaacgaa ttaaaactaa aacaaactaa aagggctgaa atcaaaatgt aaagatttta
    17821 gagtatttaa cttaaaaggt tttagctctt ttttaggagc aacaattaaa gcataaccac
    17881 ctttattata tctatcccaa atactaaaaa attgactttt agaacttata tattctccat
    17941 gacttggatc aagcacttgt aaataattac ctttatgatt gataattata acaaaatgtg
    18001 gaaagcgtgg atcatcttca atttttacaa gcattggaat atttacaagt ttatccaagt
    18061 tttctctatt gatttgatat gaattgcttt catagcctag ttttttaact gcatcgctta
    18121 aatctgcaaa gcttaccata tccgtataaa gttcctgtcc actcataatc tttaaaagtt
    18181 caagttcatc aaacttttta tcatcaagta tattgagtaa agttgccaaa gatgaagccc
    18241 cacaagattg ctcgtaagtt tgccttatta ctctttcgtt tttaatttct tgataagatt
    18301 tgactaccca ttcagctttt gcacttaaaa caagaatgga taaaaataat aaaattttta
    18361 gaattttctc cataaactta tcccaaatat gctatcaggt gaagcagagc ttcccccaaa
    18421 actagcatta actgagactg ctgtatctga attaatgcta taagtagaac ctatacttaa
    18481 agttggaata gaacgcactt cagaattttg ataaccatta attttttgct cggtttgaaa
    18541 tctttgctct gctcctaaat ctaaagtaat tttaggactt agaataatag ataaatcccc
    18601 acccacataa atactatttc catactctat tttaagggtt ttaaattttc ttgattggtt
    18661 ataaccaaag ccggtataaa tgctatatac aacaggatcg ctatatcccc ttagactagc
    18721 ttgtaagctt tgtgatttta ggtaaaagtt ttggtttgat tgactgcttt ttctctttga
    18781 acgactgcag cttgaaaggt aatttgtgga attaaatctg caatgctatc gcctgtataa
    18841 ataaaaccta gtcataaact atcaaaacct attctgtttt tactagaata ctcatttgta
    18901 aaaaagtttg tatattcttg tcttgcataa cttccgcccc ctgaaataag tatgtcaaac
    18961 ttaggtgtta tggtataaat gaaagtttga gttaaaaaca cttgctttgt atcattccaa
    19021 attgtaggat ctccgcctat tgttatatta ggataaagag aatacgagtt tgcatttcct
    19081 gtgctaagta aagaaaagct tgtaatactt cttaaaccta tttgcttttt aaacaaactg
    19141 tctatattta gttcatcact agcaaaaaca caactgacta aaaccataaa tgttaaataa
    19201 atctttttca ttgttacctt tctaaatatt ttaaaaaatt tttttaaagc aatgaatgtt
    19261 ccaaataaaa aaatttgatt ttaatatata atttatgata ttattcaaat aaagagtaaa
    19321 atagttaaga aaaggagaat tatatgttaa aaaattagta aattgtttaa ttttgggttc
    19381 tttatttaca agttctgctt ttgctgggga ttttttagct aaggttagta atggtgcttt
    19441 aagtgataat tctcaaggag ttaaggctct taatttagat gagatgaaac aagttaaggg
    19501 tggatatcaa gttcttacaa gcaaacttgg aaattctgaa tatatagcat tagctattcc
    19561 agataataca acaacatata aacagttggt agccatttat accgtaactg gcgataacac
    19621 tttttcaaat acatttttag gttatacagt aaaaagaaat atcgcaatat caagctcggg
    19681 aaaaccttat gttcttttta actatggtgt tgcactactt gatagacaaa cggggttgca
    19741 tagagttaat tcgagtgaga ttttaaataa taatcaggtt attaaagaat taactatgaa
    19801 atataaaact caatttgaaa gtaatcttgg tggctggact gctagagcta gaagataaaa
    19861 aacttatgaa aaaatcattt ttgccgattt atcttataaa taaaacttta cttacaggaa
    19921 ggtaaaaatg attaatggta taaattctta ttcaagctac aattacacaa atacttttag
    19981 taataatact tcaaatataa aatcatctaa tgttgcaaat gataactcaa gccttgtaag
    20041 cgataaatct agggcagtaa gtaaaatgct aggatatggc gtagataaag atggcttttt
    20101 tacaagcgat tttaacgaag ctgcaggctt accaaaagat tataagattt atgctaaaga
    20161 tatagaaaat tttgttaata ttcaaacaaa aagtctatta tcaagttata ttaatattga
    20221 tatagcaaaa agtataggaa atgcttataa agtattttca caacttttaa atgatgagtt
    20281 aaacaataaa atcaatttta caaaagaaga cttagt
//
LOCUS       DARGED010000014        20222 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.014, whole genome shotgun sequence.
ACCESSION   DARGED010000014 DARGED010000000
VERSION     DARGED010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20222
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.014"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..249
                     /locus_tag="SFZ84_000436"
     CDS             <1..249
                     /locus_tag="SFZ84_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG8202586.1"
                     /translation="QNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYHQNHQINK
                     ENIKYLNLASFAYKRSFFVVEYQQEIKFREQKLRGQNV"
     gene            242..1198
                     /locus_tag="SFZ84_000437"
     CDS             242..1198
                     /locus_tag="SFZ84_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG8202587.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            1202..3511
                     /locus_tag="SFZ84_000438"
     CDS             1202..3511
                     /locus_tag="SFZ84_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8202588.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNAANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            3516..4037
                     /locus_tag="SFZ84_000439"
     CDS             3516..4037
                     /locus_tag="SFZ84_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG8202589.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            4037..4660
                     /gene="serB"
                     /locus_tag="SFZ84_000440"
     CDS             4037..4660
                     /gene="serB"
                     /locus_tag="SFZ84_000440"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG8202590.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            4660..5637
                     /locus_tag="SFZ84_000441"
     CDS             4660..5637
                     /locus_tag="SFZ84_000441"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG8202591.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSTIGKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKRKMH
                     FKKPLMNFEIYTELNQIISQNEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(5638..6060)
                     /locus_tag="SFZ84_000442"
     CDS             complement(5638..6060)
                     /locus_tag="SFZ84_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG8202592.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(6057..9326)
                     /gene="carB"
                     /locus_tag="SFZ84_000443"
     CDS             complement(6057..9326)
                     /gene="carB"
                     /locus_tag="SFZ84_000443"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG8202593.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPCFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(9587..10336)
                     /gene="mreC"
                     /locus_tag="SFZ84_000444"
     CDS             complement(9587..10336)
                     /gene="mreC"
                     /locus_tag="SFZ84_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG8202594.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(10326..11366)
                     /locus_tag="SFZ84_000445"
     CDS             complement(10326..11366)
                     /locus_tag="SFZ84_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG8202595.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(11377..12600)
                     /gene="clpX"
                     /locus_tag="SFZ84_000446"
     CDS             complement(11377..12600)
                     /gene="clpX"
                     /locus_tag="SFZ84_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG8202596.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(12593..13384)
                     /gene="lpxA"
                     /locus_tag="SFZ84_000447"
     CDS             complement(12593..13384)
                     /gene="lpxA"
                     /locus_tag="SFZ84_000447"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG8202597.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVVEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(13384..13824)
                     /gene="fabZ"
                     /locus_tag="SFZ84_000448"
     CDS             complement(13384..13824)
                     /gene="fabZ"
                     /locus_tag="SFZ84_000448"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG8202598.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(13919..15010)
                     /locus_tag="SFZ84_000449"
     CDS             complement(13919..15010)
                     /locus_tag="SFZ84_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG8202599.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKRPLSVQAEIKWRNKLFGTYSLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVKI"
     gene            complement(15010..15465)
                     /gene="bcp"
                     /locus_tag="SFZ84_000450"
     CDS             complement(15010..15465)
                     /gene="bcp"
                     /locus_tag="SFZ84_000450"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG8202600.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSLNYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            complement(15462..15668)
                     /locus_tag="SFZ84_000451"
     CDS             complement(15462..15668)
                     /locus_tag="SFZ84_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG8202601.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKVIK"
     gene            15844..16758
                     /gene="ilvE"
                     /locus_tag="SFZ84_000452"
     CDS             15844..16758
                     /gene="ilvE"
                     /locus_tag="SFZ84_000452"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG8202602.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            16771..17859
                     /locus_tag="SFZ84_000453"
     CDS             16771..17859
                     /locus_tag="SFZ84_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG8202603.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FIYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFIQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIATQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDTKKQSAANMN"
     gene            17871..18401
                     /locus_tag="SFZ84_000454"
     CDS             17871..18401
                     /locus_tag="SFZ84_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG8202604.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKTAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            18401..18910
                     /locus_tag="SFZ84_000455"
     CDS             18401..18910
                     /locus_tag="SFZ84_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8202605.1"
                     /translation="MHFTIFHIIVFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            19022..>20222
                     /locus_tag="SFZ84_000456"
     CDS             19022..>20222
                     /locus_tag="SFZ84_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG8202606.1"
                     /translation="MFRLSSVSSKLLLSVAISVILAIALMIAIVSFQVASYSEKEARN
                     TILLSSKRYVNYIQGMLNEEVTLTKGVATSLNEMFQNNDHIDIDLIESLIKNTFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIVEKSGGITTISTPNNFS
                     QLNLIQNIEQNAKYGDKDSVFVDSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     IDLLEISETILDPKFDFFEGDLRFLMNDQGIIAIHKNKNAILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDLSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     IIISVAIIALIAILAVVYFFIRKIIGSRIPLILKSLENFFRFLNHEKIEVQTIEIKAN
                     DELGKMGK"
BASE COUNT         7042 a         3455 c         2933 g         6792 t
ORIGIN      
        1 caaaacaaaa aaaacctttt ttatcaaata aaagattttg aaaatttagc gaaaaaaaga
       61 tatgaaaaat atgaaaattt aggattttgg gtatgtgaag gacactatca tcaaaatcat
      121 caaatcaaca aagaaaacat taaatatctt aacttagcta gttttgcata taagagaagt
      181 ttttttgtag tagaatatca gcaagaaatc aaatttcgag aacagaaatt gaggggtcaa
      241 aatgtttgat gaaaatatcg tgaaaacggg ttcaaatgaa atggagcttg tcgatttccg
      301 tatctttaag caagggcacg ataaagtcta tgaaggaatt tatggtgtaa atgtttctaa
      361 ggtaagggag attataaaaa tcccaagcct tacagaactt ccaggtgtac ctgattacat
      421 cgaaggtatc tttgatcttc gtggagtggt tatacctgta gtcaatcttg ccaaatggat
      481 gcaaatcact gagccagaaa gcactatgct aaaacctaga gttattatta ctgaatttag
      541 caatattctt attggtttta tagttcacga agcaaaaaga attcgtagaa taaactggaa
      601 agatatagaa ccagcaactt tttctacagg atcaggtgct ttagataaag gtaaaattac
      661 aggtgtaaca cgcattgaaa atgatgaagt gttgctaatt ttagatcttg aaagtgttgt
      721 tgaagattta ggaatttacg ctccaaaaac agatatagat tttggaaaaa tagaaaaatt
      781 tactggaaca gcacttatac ttgatgacag catgactgct agaaaacgcg tcaaagaaat
      841 gatgcaacag atgggctttc aagttgttga agctaaggac ggcgtagagg gcataaacaa
      901 attagaagaa ttaagccaaa tttatggtga aagtttaaac gatactttaa aaattatagt
      961 aagcgatgtc gaaatgccac aaatggatgg tttccacttt gctgcacgca ttaaagaaga
     1021 tccaagattt aaagatattc ctatagtctt taactcatct ttatcaaatg aatttatgaa
     1081 tgagaaaggt gttcaagaag ctggtggaga aggctatctt gtcaaattta acgctagcga
     1141 tttcttcaat gaaattgcaa aggttattaa aaaacatcaa tctcaagaac aggggtaaaa
     1201 tatggaagat atgcaagaaa tacttgaaga ctttttggtt gaagcttttg agcttgttga
     1261 gcaaatcgac catgatttag tagagcttga atcaaatcca gaagatttag aattattaaa
     1321 tagaattttc cgtgttgcac atacggttaa aggatcatca agcttcttaa attttgatgt
     1381 tttaacaaag ttaactcacc acatggagga tgttttaaac aaagcaagac atggcgagtt
     1441 aaaaataact ccagatatca tggatgtggt tttagagtct attgatagaa tgaaaacttt
     1501 acttaattcc attcgtgata atggcaacga tactgctatt ggtatggata tagaaccaat
     1561 ttgcgcaaga ttaacagcta tttcagaggg agagtctcct gttgtggcaa cagattcaaa
     1621 tgaaaaatct actccacaag cagaactaga agcaccaaaa caagaaatag ctactccaga
     1681 acctgaagta gatgttaatc aattaagtga ttctgaagtt gaagctgaaa tagaaagact
     1741 tttaaaagtt agaaaagctg aagatcaagc tcgtcgcgca caaaagaaac aaacaacaaa
     1801 tgcggcacct aaaccgacta acaatgcagc aaataaacct acggaaagtg gagagaaaaa
     1861 agttcctgct tcaggtagta atgctagcag tatggatcaa accatacgcg tggaggtaaa
     1921 aagattagat cacttaatga atctaattgg ggagcttgtt ttaggcaaaa accgtttgct
     1981 taaaatttac gatgatgttg aagagcgtta tgaaggagaa aaattccttg aagaacttaa
     2041 tcaggttgta agtcaattaa gtattattac aactgatgtt cagcttgctg tgatgaaaac
     2101 aagaatgcaa cctatagcaa aagttttcaa taaattccca agagttgttc gtgatttaag
     2161 tcgtgaatta ggaaagcaaa tagaacttga aattacaggt gaagaaactg aacttgataa
     2221 atctatcgta gaggaaattg gcgatcctat catgcatatg attagaaatt catgtgatca
     2281 tggtgttgag gatccagcaa ctcgtgcagc gaatggaaaa cctgaaaaag gtatagtcca
     2341 acttaaagct tataatgagg gcaatcacat cgttgtagaa attacagatg acggtaaagg
     2401 acttgatcca aatggcttaa aagcaaaagc tatagagaaa aatttgatta ccgaaagaga
     2461 agcagatcaa atgacagaca aagaagcttt tgctttgatt ttcaagcctg gtttttcaac
     2521 tgcggctaaa gtaacaaatg tttcaggtcg tggcgtagga atggatgttg ttaaaaccaa
     2581 catcgaaaaa cttaatgggg taattgaaat tgatagtgag ttaggtaaag gaagttcatt
     2641 taaacttaaa attcctctta ccttggcaat cattcaatct ttacttgtag gaactcaaga
     2701 ggaattctat gcaattccac ttgcaagcgt tcttgaaaca gttagagtgc caatcgatga
     2761 tatctatact atcgaaggta aaaatgtatt acgcttaaga gatgaagtgc tttctcttgt
     2821 gagactttca gatgtatttg gagttaaaca agtccttgaa agcggtgatc aaacttatgt
     2881 cgttgttata ggggtagcag aaagcaagct tggtattata gtagatactc ttgtaggaca
     2941 agaagaaata gttattaaat ccatgggtga ttatttacaa aatatccaag gtatagcagg
     3001 agctacaatc cgtggtgatg gtagggtgac attaatcatt gatgtaggcg ctatgatgga
     3061 tatggccaaa gaaattaaag ttgatattaa agcgcaatta gaatcaagtg cgaaaaaacc
     3121 taaagaacaa ccaagtgatt ataaagtctt aattgtagat gattctaaaa tggatagaac
     3181 tttaatgcaa aaagctttag aaccgctagg agttagttta atcgaagcaa caaatggtgt
     3241 tgaagcattg aatattataa aatctggcga acatgatatt gatgcaatgc ttatagatat
     3301 cgaaatgcca agaatggatg gatacacctt agctggtgaa attagaaagt attctaaata
     3361 tcgcaactta ccattgatag cagttacttc aagaacaagt aaaactgacc gtttaagagg
     3421 tgttgaagtg ggtatgactg aatatatcac taaaccttat tctccagaat acttggaaaa
     3481 tgtggttaga aaaaatttga aactaggata agaatatgag taatgaaaaa ttagagcaaa
     3541 ttttgcaaaa acagcaaact cagatggctg gtcctgatgt cgatcaaaga gaagatgata
     3601 tcatccaact tgttggcttt gtagttggag atgaggaata tgcgattcca attcttaata
     3661 tacaagaaat catcaaacct atagaatata ctagagttcc tagtgtacct gattatgttc
     3721 taggggtttt taatatgcgt ggtaatgtta tgccgctcat tgatctagct caacgctttc
     3781 atttaggaag ttctaaaatg acacctcaaa caagatatat tgttttaaga ggtgagacaa
     3841 atggaactgg agttggagga aatgctggtt ttgttataga tagattaact gaagcaatta
     3901 aaattcacag aaacagaatc gatccaccac ctgaaacttt agttaaagac aaaggtatga
     3961 tttatggtat aggaaaaaga gatgaaaata tcttaactat actcaaagta gaagctttgc
     4021 ttaagcgcga attttaatga ttaaactttg tgtttttgac tttgatgcta ctttaatgga
     4081 tggtgaaacc attgatattt tagctacagc gcatggcaag ggtaatcaaa caagcgaaat
     4141 tacccgccat gctatgactg gagaacttga ttttttcgaa agtcttcaaa aacgagtaag
     4201 ctttttaaaa ggtatgtctt ataaaaaagt tttagaatta agtagcacac ttccactaat
     4261 gcgtggagca catgaactta tccaatattt aaaatctaaa aatatacaaa ttgttatttt
     4321 tagcggtggt tttcatgaag gcataaatcc tgctatgcaa aaacttggaa ttaacctcgg
     4381 ttttgcaaat tatctgcatc ataaaaatga cattttaaca gggctagttg gtggggaaat
     4441 gatgttttca aattcaaaag gcttaatgct acaacgatta aaaagctttt taaatttgaa
     4501 aacagatgaa gtgatgtgtg ttggcgatgg ggcaaatgat ttggcaatgt ttaacgaaag
     4561 tggattaaag attgcatttt gtgctaaaga aattttacgt tctcaagctg atatttgcat
     4621 agatataaaa gacttaaaag aaataataaa ggtaatataa tgaaaaattt ttctctttgg
     4681 tgtgatttta tagaaaatag ttttttagat aatgaatttt taaatttatt atcacatgga
     4741 attaatggcg ctacttcaaa tcctgctatt tttaaaaatg ctattttaaa ttctccaatt
     4801 tataaagata aaattcttaa attaaaagaa aaaaaaacaa aagatattta tgaagaatta
     4861 gcaatttctg atattcaaaa agcagctgat aaattagctc ctctttttta tcaaaaaaat
     4921 gatggattta taagtattga aatagatcca agacttcatg ataacacgac tcttagttta
     4981 ggcgaagcta aaagacttta cagtactatt ggcaaagaaa atgtaatgat taaaatacca
     5041 gctacaaaag cttcttatga agtaatgtat gaacttatga aaaatggtat tagcgtcaat
     5101 gctaccttaa ttttttctct tgaacaaagt caaaaatgtt ttgaagcttt aaatgcaggt
     5161 ttagtcgaat ttagaaaaaa caatatagcc ttaaaagaac aaaacactag aacaccacaa
     5221 gctgttataa gtatttttgt aagtcgtttt gatagacttt taaatcctaa ggctaaggag
     5281 caaaatcgta ttggaatttt aaatgcaaat ttagcttata acaatatcta ctcaaaaaat
     5341 gaacctaata ttcgcgcctt gtttgcaagc accggagtta aaggagatga tctgccaaaa
     5401 gactattata tcaaagaact tctttttgag aattctgtta atactgctcc tcttgatgca
     5461 atagaggcat ttaaaagaaa aatgcatttt aaaaaacctt taatgaattt tgaaatttat
     5521 acagaactta atcaaatcat ttctcaaaat gaacgagaaa aagcttgcaa tgacttatta
     5581 agtgatggcc tagagcaatt ttgtattgct tttgaagata ttttaaaagc tctttaatta
     5641 acgtattttt atcattttat tctttgaaag ttttaatatt tttgatggga tattttcgaa
     5701 aaatttctca tcaagtatta tatcggcaac acttctagcc cattcttcat caaattcttt
     5761 tccatgcttg tttgccgaag atgaataaaa atagccattt ttacttaaaa aattcgcatg
     5821 tttacactct ttcacaatac gaatggcctg attattggga taaataaaag ttgttttttt
     5881 agaacgacgt actaaatttt taaaagattt tggaattctt gctaaacttt ttaactcgca
     5941 aaatttcgca gaagtgatta agcaaggctg atttttatct ctacctttta aagcattaat
     6001 ctcttctaaa tttttactta aaaatcctac cgtagtatct gtttgagcta aataaatcaa
     6061 gatttaagcc actcttgcaa actctttaca tctaggcaag atttactctg tatagcttta
     6121 atcgattttg cacctgctaa agctgatcgt aaatttgtaa aataaggtat tttaaaacga
     6181 ataatatttt cacgaatttt tttcgtatcg cctttaaaac tgtgactatc gcttgtattg
     6241 ataactaagt gaatttctcc atttttcaat ttatcttcaa cattggggcg tccttctgaa
     6301 attttatgta caagttcgca ctcaaaacca ctttctaaaa tttccttgca agttccccct
     6361 gttgccataa gcttaaagcc aagctttaca tattctgcag cgattttttt ggtatatttt
     6421 ttatccttat cttttaagga gataaatacc acgccttgct ctggaagatg attaaacgat
     6481 gcaatttgac ttttcgcata agaatttgca aaatccttgc ttatacccat aacttcaccc
     6541 gttgaacgca tttcaggacc taattctaaa tcacttccac taagttttgc aaatggaaat
     6601 actgcttctt tcacgctcat atattttgga gttttagggc gtaaaatttt agtatcaaaa
     6661 ttaaccactt taaaagtatc ataaaatttt aaagcttctt ttaaatttcc ttgccacatc
     6721 acacgcgttg ccacttttgc taaaggaata cccgtagctt tactaacaaa aggtatggta
     6781 cgactagctc taggatttac ctctatcata taaagctcat tattatgtaa agcaaattgt
     6841 atatttaaaa gtcctacaac tcccaaattt aaagcaatat ctgcggtttt ttgtgcaata
     6901 aattcttgca ttttttcatc gatattgcaa ggcggcaaag aacaagcact gtcacccgaa
     6961 tgaattcctg cttcttctat gtgctccata attcctgcaa cataaacatc tttgccatca
     7021 caaatcgcat caacatcaat ttctgtagca ttgtctaaaa actgatcgat caaaacaggg
     7081 cttttatcgc ttacatccac agcttcttgc atatagagtc taagttcagc ctcatcattt
     7141 accacgcgca tcgcacgccc acctaaaaca taacttggtc ttacaagcac aggataccct
     7201 atatcactag ccttaagaac cgcttcttct acgcttgttg cagtagaatt ttttggctga
     7261 ttgataccta gctttgtaat aaattcggca aatttctttc tatcttctgc catatcaatt
     7321 actcttgcgc tagtacctat aatcttagct ccaaaagcac ttaaacgctt agcaaatttc
     7381 aaaggagttt gtccaccaaa atgcacaatc actccatcag gtttttcacg ctcaatcacc
     7441 gctcttaaat gttcgaaatc aataggctcg aaatacaaaa tatcacttgt atcatagtca
     7501 gtcgaaacgg tttcaggatt acaattatac ataatagttt taatacccat atctttaagc
     7561 gcaaaagaag catgtacgca agcatagtca aattctatac cttgtcctat acggtttggc
     7621 cccccaccta taatcatcac ttttttttct tttttatcct tagcatcgtt tttactttga
     7681 gtgagttcgc ttacattgat acttgaataa agataaggag ttaaggcttc aaattcaccc
     7741 gcacaagtat ccacttcact aaattctgcg atgatttttt gcttcattct tgcataataa
     7801 atatcatttt ggcttaattc taaattatct ttcaaattta caagcaaggc tatcatttta
     7861 tctgaaaagc ccatagtttt tgcttttctc aaaagagcct tattgtttaa aatatccata
     7921 tcaatttgtt cttcaaaatc tacaatttct ttaatctgtg ttaaaaacca aggatctatt
     7981 ttacaaagct cataaagttc ttctacgcta aaaccttccc taaaagcttg agcaacataa
     8041 agtaaacgct tttcattggc attgcgaatt ttaaaaacaa gatcatttct atcttcaaat
     8101 tttaccctat caaaaccact taaagaacgc tcaagcgaac aaagtgcttt ttgtatactt
     8161 tctttaaaag tgcgtcctat agccattacc tcacccacac ttttcatagc tgtacctaaa
     8221 gttgtatttg ctcctggaaa tttttcaaag gtaaagcaag gaatttttgt tacaatataa
     8281 tcaatcacag gctcgaaaga tgcaggagtt cctgtaatat catttttaat ctcatctaag
     8341 ctaaaaccta ctgccaaaag tgtcgcaacc tttgctatag gataacccgt tgccttagaa
     8401 gctaaagcac ttgatcttga aactcttgga ttcatttcta taactatcat tcttccattt
     8461 tttgggttga tagcaaattg cacattactt ccgcctgtat ctacaccaat ttcacgcaaa
     8521 atagcaaaag aagcattacg cataacttga tattctttat ctgtcaaagt taatgctgga
     8581 gctattgtaa tactatctcc tgtatgaact cccataggat cgatattttc tatgctacaa
     8641 actatgatac aattatccgc tctatcgcgt ataacttcca tttcatattc tttccaacct
     8701 aacaaacttt cttcaatcaa aatttcatga ataggtgata aagctaaagc agtattggta
     8761 agttctttaa attcgtccat attgtaaacc acaccacttc cagcaccccc taaagtataa
     8821 gaagcacgga tcatcaaagg aaagccgatt tcatctacgg cttttaaagc ttcgtcataa
     8881 ttatacgcat acatcgattt tggcaaatcc atgccaattt ttttcataca ttctttaaaa
     8941 acctgacgat cttcgccttt tttaatcgcc tcaggatttg cgcctaaaaa tttcacatct
     9001 cctaaaagtc cgctttcata aacttccata gcaacattta acgctacttg tccacccata
     9061 gttggcaaaa ttgcatcaat tttttctttt ttaataatac ttaaaatact ttcttttgtt
     9121 atgggttcta tataagtcgc atctgcaaat tcgggatctg tcatgatggt tgcaggattt
     9181 gagttgatta atactacacg atatcctaat tcttttaaag tctttgcggc ttgagttcca
     9241 gaataatcaa attcacaagc ttgtcctatc acaataggac cacttcctat aagtaaaatg
     9301 cttttaatat ctgttcgttt tggcataaat tttcctaaga gcataaattt gggctgatta
     9361 taacaaaaat tagttttata aactttgaaa ttatcgatat aattttaaaa aataaacact
     9421 ctgcttttaa tctaggaaat aatacataaa gaaatttaag attttttata aaattctcat
     9481 tcaattataa acatttattt gataatttaa caaaattttt agcattaaac aaagttataa
     9541 taattagcaa aaatatagaa aatttttaaa aagtctaatc cttgacttat aaattatcta
     9601 ctacatataa ataagcagga atactaatct taacataagg ctttacttct acactttgat
     9661 acatatcttc atcattaact ctattcacaa taccaacagg tatatctgaa aagaaaatat
     9721 tatcaagtcc acttgttaaa atttcatctc cggtattaat ttttgcccat tttggaataa
     9781 atttaaccac aatcctgcca tcttcaccct ggattaaacc tggagctttg gattttccta
     9841 tataaacaga aaaaacacac tgatcatcac cttgtaagag agccattgct ctaccatttt
     9901 tattaatagc tatacctgca gtatatcctt gatatatcaa accacggttt ttaccaacgg
     9961 gaattttgct ccaatctaac cataattttt tataatcatt caattgaaca taagaaataa
    10021 ctctagttaa agaaacttga ggtaaatatt ttgtagaatt ttgatcctct aaaatacgat
    10081 ttaattgatt tgcaaaacta gttaccttta cagcaatatc ttctaattct ttatttctag
    10141 cttttagttg ctgaatttga tttgcttgat taaagtgttc tgaaattttt tttcccaaat
    10201 aatctttaat attataaaaa ttacctataa caaaatcatt aacacggaga acattttgct
    10261 tgataagtcc tccataataa aaagatataa aaaccaaaaa ggctaagaca agaacataaa
    10321 aaatcttatt cttcattggt taattgttgc aataatgaaa tttcctctaa agctttaccc
    10381 gttccttttg ctacagctaa aagcggttca tctgcgatat aaactggcaa acgtacaatt
    10441 tcacttaagt atttatcaaa accacgaatc aatgctccac cacctgttaa aactacacca
    10501 ttttctacta tatcacttgc taaatcaggc ggcatcattt caagaaccat ttttaaagca
    10561 tcagcaattt cttttaaata ctcacgcatt gcttctctta catcttcact tgtaagttca
    10621 atacgactta aaagtccact tacttgatcg cgtcctttta ccaccataga aagttctttt
    10681 ggaagttgta ttgctgaacc tatggtgatt ttgatctctt cgcctgttct ttcacctatg
    10741 ataagattgt atttttcttt tacataatta actatactca tatcaagctt atctccagct
    10801 gtacgaatag actttgaaat cacaagtccg cccaaagaaa tcactccaat ctcagtagtt
    10861 ccacccccta tatctactac caaatttcct ttaggttctt gtataggtaa acttgcacca
    10921 atagctgctg ccataggctc ttcgatcaaa aatacctctc ttgcacctgc acttaaagca
    10981 ctttctctta ccgcttttct ttctacttga gttaaaccat aaggaacaga aataataatt
    11041 ctagggcgta aaaaactttt tctacgatgt gttttttcta taaaatagcg gatcattttt
    11101 tcagtcatat caaaatctgc aatcacgcca tctttcatag gacgaatagc ttcgatgtta
    11161 cctggagttt ttcccaccat atctttagct tctttaccta cggctaaaat ttttgctttg
    11221 gaaccatacc tttctctttc aactgctaca acagaaggct cgtttatcac tataccctta
    11281 tcttttacca aaactagcgt attagctgtt cctaaatcaa tccccatatc actagaaaaa
    11341 aatcctataa gttgatctaa tatcatttct atccttttaa cttatttttc tttttattaa
    11401 taatgccttt gcattgtctt taacaacttc tttggttatt acaatatcat agtttttata
    11461 ctctggtaac tcaaacatta aatctaccat catttcttct ataatacttc taagccccct
    11521 agcccctgtt tttctctcca atgcaagctg tgcgatagct cttagagcat cttcttcaaa
    11581 ttttaaattt accccatcaa tagcaaaaag cttttgatat tgcttaataa tggcattttt
    11641 aggttcagtt aaaattctta ccatatcttc ttcattaagc tcatttaaag atgcaatcac
    11701 atgcaaacga cctataagct caggaatcaa accaaaatgc accaaatcat caggttcaat
    11761 tttctcaagt aaagctttat tttcttcttt tgcatcatca aaaaaaccta caactttatc
    11821 tccaagtttt ctttttaaga tagtttccaa accatcaaaa gctccaccac aaacaaataa
    11881 aatatttgaa gtgtcaattt gtataaactc ttgatttgga tgttttctcc ccccctttgg
    11941 tggaatattt accaaacttc cttcgataat cttaagtaaa gcttgttgca caccctctcc
    12001 acttacatca cgagtaatag aacgattttc actcattctg gcaattttat caatctcatc
    12061 aataaaaact ataccttttt gagctctttg cacatctcca tctgcagctt gtaaaagacg
    12121 tgttaaaata ttttctacat cctcacctac atatcctgct tcagttaaag aagttgcatc
    12181 acaaattgct ataggtacat ctaaaaattt agctaaagtt tgcgccaata aagtttttcc
    12241 acttcctgtt ggcccaacaa gtaaaatatt tgacttaaaa agctctgtat catcatcttg
    12301 aagttcagct ttaaaaagtc ttttataatg attgtatact ccaacactaa aaactttttt
    12361 agctctatct tgtcctatga cataacgatc taaataagct tttaattctt ttggagtgat
    12421 atctttaaat tctgtattat gactttgttt aggttcttta aattcttttt cttctccata
    12481 aataatacta taagcacctt caacgcaata ttcacaaata aaagcatcat cattttcatt
    12541 tgctaaaatt cttctttgtg gattctccac ttcattgcaa aaactacatt ttctaggcat
    12601 tatttttacc cctatagaca ggaattccac gctttgtttc taatataaaa tggcacattt
    12661 ttttaacatt ttcactttct tgattttcaa gcaaattttt agcattttct tttaaatctc
    12721 cttgtctaaa taaagtttta aaagctctac taagtctatc tacttcatct ttatcaaaac
    12781 gacgacgagt acctactaaa tttaaacttc taatacttgc acgatttcct tctgctaaac
    12841 aaaacggtac tatatcctga gaaagtgcac ttgctcctgc tatcatacaa ccctcaccta
    12901 ctttgacaaa ttgatgaata ggtgtaagcc cgcctacaac cgtaaaatct ccaagctcta
    12961 catgtcctgc caaagttgca ttattagcta aaataatatt attacctaaa agacaatcat
    13021 gagcaatatg acaataagcc ataataaaag cattatcgcc tatacgagta aaaccatctc
    13081 ctttagctgt acctgaattt atcgttgcaa attctctaat agttgcattt ttccctataa
    13141 caacaccgct tttttgctct tctttataag atatgtcctg aggaatatcg cctactatag
    13201 cataagaaaa tacacgagaa tgatcaccta tagttgtatc tgaaagaatt cgagcacctt
    13261 gtttgatgac aacattatta cctattttag catctttgct tacataagca taagcttcta
    13321 ctacaacatc gtcaccaagt tgtgcaccct cttcaatcac cgcacttgga tgaatttttt
    13381 tcattattta tccactatca tagctttaag ctcggcctct gcaactaaat ttccatctac
    13441 aaaagcttgc cctttaaaaa tccacatatt accacgattt ttaaccacgc tcatttcata
    13501 atcaagccta tctccaggac gcacaggatt tctaaatttt gctccatcta tgcctgtgaa
    13561 ataaactact ttactttttg gatccacttt atcttccata ctttcaaaag ctaaaactcc
    13621 acctgtttga gccatacctt ctaaaatcaa aactccagga taaataggat gccctggaaa
    13681 atgtcccata aaaacatgat cacttatact gatgttttta tatcctagca ccacttcttt
    13741 aacttttaat tctgtaattt tatctaccag taaaaaagga taacggtgtg gtaagatttc
    13801 ttgaatttgc attacatcta tcattattaa attaaccttg aaaacaatta aaaattttat
    13861 tatataaaaa aatcattaaa aattatatta acaaaaaaag tttttcttaa taaatttctt
    13921 aaatttttac aagcacctct tgattatcat gataaatttc actttttgct atcacttcat
    13981 atcttgaagg taaaatattt tcgaggatga taataggact aagactataa gttccaaaca
    14041 atttattacg ccatttaatt tctgcttgaa cacttaaagg tctttttaaa aaatcttcaa
    14101 aatttttcca tttgttttta aaaaatgcat taaaacgcca aaattccact aaaactattt
    14161 catctttagt acttctataa aagccttctt ttaaattttg ttttaaattt tcctcatcca
    14221 aagaaaatct tgtataagcg tttttaaaat gcgaataaaa taaaatatga gatttaacgg
    14281 gctttttatc taattttatc aaagcactta aaagacgata atttaaaaat ttctctctta
    14341 aaatttcaaa ttttatacct tttttttccc ataaaactac ttttttataa agagctattc
    14401 ttgcttctat acttgcaggt aaaatttgct tatttacagg agacattaat tcatcaataa
    14461 aattcttatc ttgtttttgt tttttaagcc cataaatgca gccgcaatag ttttgatgat
    14521 aaagcatttc cttttttgct aaagcaaact gtctttgagt gccgccattt ttacgaaaat
    14581 caggagctaa aaactctact ccataaggct cacattcttt ttgtaaagca ttttttaact
    14641 gttctaaatc ttttttaggg ctggttaaaa gcgtagtagt aagctttttt tctcctattt
    14701 tagcagcaaa tttaacacta gatcccattc ttacatcaaa gcaaatttca caccttgcac
    14761 ccttttcagg ctcatcttca taaccacgca cagcattaag ccatttttca tactcatact
    14821 cacctttata aagcttaata ccaagtttat cacaagatct ttttacatct aaaaatctta
    14881 gttcgtattc gcttaaagga tggatatttg gatcataaaa gtatcctata attttttcat
    14941 caggataagt ctttctaagt tcttcaataa aataatgact atccacgctg caacaaatat
    15001 gcactaacat taaagacttt caagcacttt taaagcatga tcttttacac gaacattact
    15061 ataaatttga gcaatcttac ctgtttcatc gataacaaaa gtagagcgaa taagaccttc
    15121 gtattctttt ccgtaatttt ttttaagccc ccaagctcca taagctttag caacttcttt
    15181 ttcactatcg ctaagtaaaa tatgttttaa atcaaattta gagataaatt tttcatgact
    15241 tgccacgcta tcaggactga taccaataat cactgcattt ttaccaccaa atttatcata
    15301 atttaaacta aaatcacaag cctctgtagt gcaacctgga gtattatctt ttggataaaa
    15361 atacaaaatc acctttttgc caataaaatc ttttaatgct atttttaccc catcttgatt
    15421 taaaagctca aactgaggtg ctttatctcc tatgtttaaa ctcatttaat tacctttgct
    15481 ttgatagctt caacgctttc tccgccaaag cctatgtcat aattttctac atcttctaaa
    15541 accaccacaa ctctttcttt acttttatta tatttcgtgc ttaaaagttt ggtaatatca
    15601 gctataagct ccgctttttg ttccttgctt aaagacggct ttgctaattt aatatttact
    15661 aatggcattc tttctccttt ttaacgataa tttttcataa ttatttcaaa aaatacctaa
    15721 tatttttttt aacaaaaaac cttaatttaa taaaagctta ttgttagtat atttttgata
    15781 aaatcccgat ttattcttaa aataatattt tttaagaaat aaacaactat aaaaggtaaa
    15841 aaaatgatct cagcagataa aatttggatg gatggaaaat tagttgattt taaagatgca
    15901 actttgcact ttttaaccca ttctttgcat tatggcaatg ctgtttttga aggaactaga
    15961 gcctataaaa cagataaagg cttagcaatt ttcagacttg aagatcacac caaaagactt
    16021 ttagagtctg caaaaattac tcttttaaat tgtccttttt ctcaaaaaga gcttgaaaat
    16081 gcacaaattg aactcttaaa agcaaacaat tttaaaagca atgtctatat ccgccctttg
    16141 attttcttag gcgatggagt tatgggactt tatcatataa aagctcctgt aagagttgga
    16201 attgcggctt gggaatgggg tgcttacctt ggagaagaag gtttagaaaa aggcataaaa
    16261 gtaaaaattt cgtcttttgc aagaaatagt gttaaatcat gcatgggaaa agctaaagca
    16321 agcgcgaatt accttaactc tcaaattgca aaatttgaag ctattgaagc aggctatgaa
    16381 gaagctttaa tgcttgatga agaaggtttt atcgcagaag gaacaggaga atgtttcttt
    16441 attgtaaaag atggggtttt aatcacacct ccaaatgatt tttctttaaa aagcattact
    16501 caagatacag tgcttaaaat cgctcacgat cttggtatca ctgtgcttcg ccaaagaatt
    16561 tcaagagatg aagtttatac tgctgatgaa gcatttttta ccggaacagc cgctgaaatc
    16621 acacctatta acaacattga tgcaagaata ataggaaatg gtttaagagg atctgtaact
    16681 aaaaaacttc aagatgctta ttttgatgta gtttatggac gcaatgaaaa atatgcatct
    16741 atgctaactt atatttaaaa aaggaaataa atgccagctg atttgaatga ttatttcaat
    16801 aaaaaaaatg gaaattctaa caataacgga aacaacaacc gtcaaaattt caatttcaaa
    16861 gcaccagaat ttaattttaa aggttttggg aaattctctc catttattta tggggtgatt
    16921 attattatct tatttttaat cgttgcaaaa ccttttatgg tgataaattc tggggaaatg
    16981 gggattaaat caacaacagg taaatatgac ccaaatccat tagaaccagg acttcacttt
    17041 ttcttacctt ttatacaaaa aataaccata atcgatacta gagtaagaca aatcaactat
    17101 gcttctatag agggaagtaa tgaaaattta tcttcaggtt caggtgttat taataaaaat
    17161 agcatttctg tacttgactc tcgtggattg cctgtatcta ttgatgttac agtacaatac
    17221 cgcttaaatc ctttgcaagt tcctcaaacc atagctactt ggagcttaaa ttgggaaaat
    17281 aaaattatcg atccagttgt tcgtgatgta gtgcgaagtg ttgtaggaaa atacacagcc
    17341 gaagaacttc ctactaatcg taatacaata gctactcaaa tagaagaagg tataagaaaa
    17401 accatagaag cccaaccaaa cgaacctgta gaacttcgcg ctgtacaact tagagaaatt
    17461 attttacctt caaaagtaaa agaacaaatc gaacgcgtac aaattgcaaa acaagaagct
    17521 gaaagaacca agtatgaagt agaaagagct aatcaagaag ccttaaaaaa agctgcctta
    17581 gctgaagggg aagcaaatgc aactataatc agtgccaaag gtaaagctat ggctgttaag
    17641 atagaagcag atgcacaagc ttattctaat aaagaaatcg caaacagcct aaacactcct
    17701 ttgctaaatt taaaacaaat tgaaactcaa aaagaattta atgaagcttt aaaagtcaat
    17761 caagatgcta aaattttctt aactccaggt ggagcagtgc caaacatttg ggttgatact
    17821 aaagatacta aaaagcaaag tgctgccaac atgaactaaa ggatatacaa gtggagaaac
    17881 taagagaaat tgtgcttttt tacactactc atttatattt agtagattat atgctgattt
    17941 tactagtttt ttttctcttc acttgtgttt tacttctttg cgtattttta cgccatagac
    18001 ctatagcagc actttttatt attgcatttg atattattat ttgtttttta gtttatatct
    18061 atgggtataa actaatagac aatgaagtaa gaactcgaaa aaccgctatt acagatcaaa
    18121 aaatgataca aagctcaaat gatttaattg ttgattttaa cattacaaat aattcaaaaa
    18181 ataattttaa agaatgtaaa attacagcta aaatttttgc agataaaata cctaatgata
    18241 atatcataga agaatataaa aagaaattta tcccttttag acaaaaaagt agagaaatta
    18301 aagatctaaa gaaaaacgca acccaatttc aaagaattgc ttttgaaaat tttaactatg
    18361 aaaataacta taccatacgc ttagtttcgg agtgttttta atgcatttta caatttttca
    18421 tattatagtt tttatcattt tacttatttg ctttgccttg atttgtattt taatctttct
    18481 aaaagtcaaa cagaaagaaa tggctttgat ttcttatacc atagctacta tttttaccgc
    18541 acttttgata tattctattt ttctaacaat caatcaattc accactcaag ccgatcttag
    18601 caaactaacc tacacaagag atctaagaca tgaaagcgtc atagtaagtg gaaaagttca
    18661 aaatcttact aaatttgaaa tcaaaaaatg ctatttgata cttagcatat taaaccaaca
    18721 acaagtagga ggtgaaattt tcaatgataa aaatatccgt aacgctaaaa tgcaaaatac
    18781 aagtgtttct tatactatag aaatcataga cacactcccg ggtaatacct ataaagaatt
    18841 tagagctagc gttccttttc ctccaacttt taataatcct gaattttatc acaccttaaa
    18901 atgtatttga tattgttaaa tagttttaaa acatctataa aaaataattt tatattaatt
    18961 ttattttttt tgatatgcta acgagcttta tttttagtaa aaaatttatg tgaggttttt
    19021 catgtttaga ctatcgagcg ttagttcaaa actcttatta tcagttgcta ttagtgttat
    19081 tttagctata gctcttatga ttgctattgt ttcttttcaa gttgcttcat attcagaaaa
    19141 agaagccaga aatactattt tattatcttc aaaaagatat gtgaattata tacaaggtat
    19201 gttaaatgaa gaagtcacac taaccaaagg agttgctaca tcgttaaatg aaatgtttca
    19261 aaataatgat catatagata tcgatttaat tgaaagtctt ataaaaaata cttttgatag
    19321 tagtcactat gcagcatata catttctcta tttaaaagat actactgtat taagtgatat
    19381 gcagaatgta gataaaaaat atattagccc agatggaaaa actttttcta tgatattttt
    19441 tgatcaaata gtagaaaaat ctggtggaat aactactatt tcaactccaa acaatttctc
    19501 tcaattaaat ctaatacaaa atatcgaaca aaatgcaaaa tatggagata aagactctgt
    19561 ttttgtagat tctcctagaa aacttaatta tgataataat gaatttttag gtataaattt
    19621 cggtatgcct atttttaaca ataagggcaa atttattgga gttataggat atactataga
    19681 tttactagaa atttccgaga ctatattgga tccaaaattc gacttttttg aaggggatct
    19741 aagattctta atgaacgatc agggtattat tgctattcat aaaaataaaa atgcaatttt
    19801 aaaaacttta tttgatatta acaaagatca atctgctcaa ttaattgttg aggcagttaa
    19861 aaaccataaa gatgaaatct tagataatta tattgcctca acaggagatc ttagttatgc
    19921 tagtatctct tcatttagca ctttaggtaa ttctagtcat tggagtgtaa ttgtaacagc
    19981 tcctaaaaaa tcagttttag cccctttata taaactacaa tatattatta ttagtgttgc
    20041 tataatagca ctaattgcta ttttggctgt tgtgtacttt tttataagaa aaatcatagg
    20101 ctctagaatt cctcttatac ttaagtcttt ggaaaatttc tttcgctttt taaatcatga
    20161 aaaaatagaa gttcagacaa ttgaaattaa agctaatgat gaattgggca aaatgggtaa
    20221 aa
//
LOCUS       DARGED010000015        19760 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.015, whole genome shotgun sequence.
ACCESSION   DARGED010000015 DARGED010000000
VERSION     DARGED010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19760
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.015"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            74..577
                     /gene="ctf"
                     /locus_tag="SFZ84_000457"
     CDS             74..577
                     /gene="ctf"
                     /locus_tag="SFZ84_000457"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG8202607.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            620..1996
                     /locus_tag="SFZ84_000458"
     CDS             620..1996
                     /locus_tag="SFZ84_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG8202608.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNNYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIYYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLTLSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            1997..3007
                     /locus_tag="SFZ84_000459"
     CDS             1997..3007
                     /locus_tag="SFZ84_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG8202609.1"
                     /translation="MSVVRFFFILIIVLGLVIVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            2994..4172
                     /locus_tag="SFZ84_000460"
     CDS             2994..4172
                     /locus_tag="SFZ84_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG8202610.1"
                     /translation="MLVNKFKIILLFFIVFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(4175..5545)
                     /locus_tag="SFZ84_000461"
     CDS             complement(4175..5545)
                     /locus_tag="SFZ84_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG8202611.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(5547..7472)
                     /locus_tag="SFZ84_000462"
     CDS             complement(5547..7472)
                     /locus_tag="SFZ84_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202612.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(7472..8644)
                     /locus_tag="SFZ84_000463"
     CDS             complement(7472..8644)
                     /locus_tag="SFZ84_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG8202613.1"
                     /translation="MKKKVILIVLIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLATKMKLRF"
     gene            complement(8723..9913)
                     /locus_tag="SFZ84_000464"
     CDS             complement(8723..9913)
                     /locus_tag="SFZ84_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8202614.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTARLVCKIL
                     DEFGIKYQKNIAKTGILATIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGSLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMAT
                     QFVNNIQSVVSRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAALIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(9922..10803)
                     /gene="ppk2"
                     /locus_tag="SFZ84_000465"
     CDS             complement(9922..10803)
                     /gene="ppk2"
                     /locus_tag="SFZ84_000465"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEG8202615.1"
                     /translation="MQENNSPKAQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            10899..12602
                     /locus_tag="SFZ84_000466"
     CDS             10899..12602
                     /locus_tag="SFZ84_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG8202616.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTGKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            12599..13267
                     /locus_tag="SFZ84_000467"
     CDS             12599..13267
                     /locus_tag="SFZ84_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG8202617.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            13318..14661
                     /locus_tag="SFZ84_000468"
     CDS             13318..14661
                     /locus_tag="SFZ84_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8202618.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFTLSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(14653..15528)
                     /locus_tag="SFZ84_000469"
     CDS             complement(14653..15528)
                     /locus_tag="SFZ84_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG8202619.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(15515..16468)
                     /locus_tag="SFZ84_000470"
     CDS             complement(15515..16468)
                     /locus_tag="SFZ84_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG8202620.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(16465..17907)
                     /locus_tag="SFZ84_000471"
     CDS             complement(16465..17907)
                     /locus_tag="SFZ84_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8202621.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(18002..19066)
                     /gene="fbaA"
                     /locus_tag="SFZ84_000472"
     CDS             complement(18002..19066)
                     /gene="fbaA"
                     /locus_tag="SFZ84_000472"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG8202622.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(19066..>19760)
                     /gene="peb4"
                     /locus_tag="SFZ84_000473"
     CDS             complement(19066..>19760)
                     /gene="peb4"
                     /locus_tag="SFZ84_000473"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG8202623.1"
                     /translation="MLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYT
                     KELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEK
                     EAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAF
                     ALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKG
                     QDLLNSAKVEYK"
BASE COUNT         6596 a         3322 c         2579 g         7263 t
ORIGIN      
        1 aaaaaattta gcttgttttt aaaaaaataa tatatcatta taaaacattt taaattttaa
       61 taaggagata agaatgcttt ctaaagaagt tgtaaaatta ctcaatgaac aaataaacaa
      121 agaaatgtat gcagcaaact tatatcttag tatgagttct tggtgctatg aaaacagtct
      181 tgatggagct ggagccttct tgtttgcaca tgcaagcgaa gaaagcgatc atgctaaaaa
      241 gcttatcact tatcttaatg aaacagattc tcatgtagag cttcaagaag taaaacagcc
      301 tgaacaaaat ttcaaatctt tacttgatgt ttttgaaaaa acctatgaac atgagcaatt
      361 tatcacaaaa tcaatcaata ctttagttga acacatgcta acacataaag actattctac
      421 ttttaatttc ttacaatggt atgtaagcga acaacacgaa gaagaagcac ttttccgcgg
      481 tatagttgac aagattaagt taatcggaga acacggaaat ggactttatt tagctgatca
      541 atacatcaaa aatattgcat taagtagaaa aaaataatct ttgccctatt atgggcaaat
      601 ctcgctttgg attgaaggta tgacttattt ttctctagaa tttagtattt taatgatagc
      661 tttttttgct atttattgga cttttaaaaa taattataaa atacaaaata ttttaatttt
      721 aattttctct tatattattt atattttaat caatccttat ttcgccttgg ttttatttat
      781 atataccttt tttatatact attttgcctt gctaattttt gtgcgtcgca agcgttatat
      841 tttcgctact tgcatggctt ttattatttt aaatttatgt ttttttaaat actttcctag
      901 tatcaaagga agtgttgatg agatattaaa ttttttcggt ttagaatttt taaatattga
      961 tttagtatta ccaataggaa ttagttttta tacctttact tctattactt atcttgtaga
     1021 agtttatcaa aaacgccgtt tagaaagttt tttaaattta gcaaccttct tatcattttt
     1081 tccaacgcta ctttcagggc ctattatgcg aagttctttt ttctttgaac aggcctatca
     1141 aaaacgcgaa tttaaacatg caaatttaat catcatcttg cttgtttttg gtatagttaa
     1201 aaaagtttta atagccaatt accttggaat ttatgctaaa agtattttag actttccaca
     1261 atcttataat ttcatacaac ttttaagcgc aatttacgcc tatgcaattc aaatatactg
     1321 cgattttagc ggatatgttg atttagtttg tgcttttgct ttaatgttag gttttaccct
     1381 tccgcctaac tttaacatgc cttatcttgc aaaaaaccta aaagattttt gggctagatg
     1441 gcatatcagt ctttcaacct ttataagaga ttatatctat atacctttag ggggcaatag
     1501 aaaaggaata ccacgcactg tagctaatat actcatcgct tttatacttt caggtatgtg
     1561 gcatggcaat acacttgctt ttattgtttg gggtttgttg catggtattg gcatagtttt
     1621 tatacatttg ctaactttaa gcaaatttag tttacaaaaa attccagctt taggaagatt
     1681 tttaaccttt caatttgtat gttttacttg gattttcttt tactatagca aaaatctaga
     1741 agatgcaata gaatatttta aagcttgtta ttataatttc ttccaaattc catcctataa
     1801 tgatatttat atgttggttg cttttggggt tctttttatg atctatcctt tatttattaa
     1861 ttttaaagaa tattgcatta agattttaaa tcttactcca tttttactaa aaccttttat
     1921 catagctttt attttacttt tggtttttgc ttttatgcca gatggaattc ctgattttat
     1981 ttattcgagt ttttagatga gtgtggttag atttttcttt attttgatta tagtgcttgg
     2041 cttggttatt gtagttatga atcagagtat tagctcttat atagaacaaa aatatcactt
     2101 tgcattctat cctcataatg atcttttaaa agaagccaat ggcttcaaaa ttaaattaga
     2161 acaaattcgt gcaattttaa gcaacgaacc cttgcctcaa actaatgaag aaactacaaa
     2221 tcaagaaaat aaatcaatag atgaaaactt aagtaaaata gataaagttc taaacacttt
     2281 agaaaatgat gaaaacactt ctcataaaga aacaaatcta accttaatcc aagatgcaaa
     2341 tattagtttt atcgacaata ccaaattaga gctacaaaat ggagatgagt ttttatttat
     2401 cggagattct ttaatgcaag gtgttgcaat agccttaaat agagatttaa gaaatttaaa
     2461 tcttaaggta accgatctta gtaaacaaaa tacaggtctt tcttataaat cctattttga
     2521 ctggtcaaaa gccaccaatg aagcttttat taaaaactca aatattaaat atcttgttgt
     2581 tcttcttggc gctaatgatc cttgggatat taaaaaagga ggaaattacc atcgttttgg
     2641 ctccccttct tggatagata tttacacaag tcgtgtagat gaaatcatta aaatcgctaa
     2701 aaaacataaa gccaaagttt tttggtttga aatccctcct gtaaaaaaag aagatttgaa
     2761 caaaaaaata caagtgctca ataaaattta cagcgatgaa attcttaaaa ataaagaaat
     2821 ttttatcaac actaagctat tttttagtgt caatgatgaa tactcagctt atataaaaga
     2881 tgaaaacaat agaagtataa aagtaagaac agatgatggg gttcatttta ctccaagtgg
     2941 cgcaagagaa atgtctaaac ttttattaga acacataaaa cttaaggaag aaaatgctag
     3001 taaataaatt taaaattatc ttattgtttt ttattgtttt tactagctct tatgcacaaa
     3061 atttaaatac aaatgacaca atagattcca tactcaatca aaacaaaaat cactctgctt
     3121 taacaagtta tgtattaaaa aaagatctta aaaatctaga aaaaaaatta gaaaaaaatc
     3181 aaaacatagg aattagaatt tatggagatt ctcatatggc ggctgatttc tttccgcgtg
     3241 tcataagagg atatttaatc cgctctaact ctataggttt tgcctatcct ttacagccca
     3301 aatatcaaca aaatcttaat cttgtttatt cttataaaaa ctttgaaatt ttaaactcaa
     3361 gaaatcctgc taatgctgga cataattttc cattaggtgg gataatagcc aaagcaaaaa
     3421 tcaaaggcgc aaaaatcaac cttgatacaa ccttagataa aaaaaaattc aagataggat
     3481 ttttatttaa agccaaacaa aataccaatg cttttagcat caaagatgca aaaaaccaaa
     3541 gctatgagtt aagaactaca caaattaaca aatggtctta taaagaacta gaacttgatc
     3601 ttcctttgca aatttcagcc ttacaaaaag atgctgagct aggaggatat ttcatcacaa
     3661 ataaagataa taatgttttc ttagatacca ttgcaatcaa tggtgccaaa agtgatttat
     3721 ggctctcttg gaatcaaaca gttgtaaaaa aagaactagg acttttacac aatgatttaa
     3781 ttattcttgc ctatggttct aatgatgcac tctttaaagg gtttgaaaaa caaaaattca
     3841 aaaataattt aaaaaaatgg attagtattt taaaaactta caataaaaac gctgttatca
     3901 tgctaatctc tccaccaact gtagttcaaa aacaaggtaa aaactacaag cttgctcctg
     3961 atttttttac catacgcaaa gcattatatg aagttgctaa agaagaaaaa actcttattt
     4021 ttgatatgca tcagtttatg caagatagtg ggggaaaaaa caaatggata gaacaaaagc
     4081 tttcgctcaa tgatgtacat cttactataa aaggctatga gctgatggct aaaaagttac
     4141 tcgaggattt aaaaaatatc attgattatt aaatttaata cttaggaaat tctaagtttt
     4201 catcattaaa acttaaagct gtgatttgat agtaagaatt aatggttttt aaaagattaa
     4261 atctagctct taaaaattct tgctgggtag aatttaaagt attgtttgca tccaaataat
     4321 cttttaattc actttttcct aaaatatatt tttcataata cgccttagtg ataagctctt
     4381 gtttaatgtt aatattttgc aaattttgca aaagcaaggt gtcgctttga taatctttat
     4441 aattcaatgc aaattcattc atcgcacttt gcaaggcttg ctcataagaa attaaaagtt
     4501 gctcataagt aaattgtgaa attttgatat tttgctttac tctaccataa tctaagaaag
     4561 gtaaagaaat cttaacattg ccacttaaaa tttcaaattt aaaactatca tcgatttttt
     4621 tatcacttcc gcttaatgct ccacctaaag aaatactagg caaaatagat ttttgcatgg
     4681 aagaataatc cttaaaggct gattttaagc tattgagttt agatctcaca tctgcacggt
     4741 acgctaaagc ttttaaaggt atattaaaat caggacttaa ggttttaaaa tcatttaaag
     4801 ataaagtttt aaaatactct atataagcaa aaccttcttg ccttgccaat aaatcttgta
     4861 aattttttat gagtaaatta cgattttgat cattgcttaa taaattttgt ttagctctta
     4921 ataagctttg ttctatgttt aaaagatcta attcttctat ttttccaagc ttgtatttat
     4981 agttataaag ctctttcatt tgttctaaat ttgaaagata agctcgaagc aatttatcta
     5041 catcgttaaa ataagccagc tcaaacacat catttaaagc tgtattgatc atacttattt
     5101 ttaaattttc aagatcataa gcacttgctt ttgcactaaa ttcactcgca cttgcactat
     5161 ctcttaattt gccataaata tcaagctcat agcttaaatt taaagaatta ttgaaatttt
     5221 tactttgttt gcctgaattt aaatctttat ccgcaccaaa acccaaattt ccacttaaag
     5281 tcggatataa atcataatca atcaaatcag ctctagccaa agccgaaagc aaagtttttc
     5341 tagcaatatt aatatcacta ttattcaata aaacaaaatt tagaaattca tttaattttg
     5401 cattatcata agatctatac caatcataag taagatttaa atctttcatt tgttcttgag
     5461 ttaaatcaac ttctttaggc aagctaagtt ttacaccaca agcgctcaag aaaaatgcta
     5521 aaaaaatgct aagtattatt ttcattttat tcctttgata atgcgctaat aggatttaaa
     5581 tttgctgcat ttcttgcagg gaaaaaacca aaaaccacac cgataaacat agaacttaaa
     5641 agtcccaaaa gcacagaata ggcatttaaa atcataggaa aatccgtact taaagtatta
     5701 aaagcaaaaa taacaaaaat cgataaaatc acacctaaaa tcgcccctat agtacaaatc
     5761 ataaccgctt cgattaaaaa ctgcatcata atatcttctc ttctagcccc tatagccatg
     5821 cgtatgccta tttctcttgt tctttcactt acagaaacaa gcatgatatt catcactcct
     5881 atacccccaa caatcaaagc aatcacagcc acacaagcgg taagtatggt tgtagtgcgt
     5941 ttatttgctg taatagcttg cttaaaagtg tcagaattaa aagtaaaaaa atccttttgt
     6001 ccgcgtttaa tttctaaaat tcttataata gcattttcag ccaaagttga actcacatca
     6061 tctttaacct taactatgat ttcacgcaaa tttctatctc ctgtaagctt attcatcagt
     6121 gttgtatagg gtatataaag acgtactaca ttatcttcta taggcttgtc tgtatctttt
     6181 tgcaaaactc ctataatctt aaaaggttga gaattaaaaa gcaccacacg acctaaaata
     6241 ttttcacttt tttcatcagg aaaaagattt tttttagcat taaaatccaa tacagcaaca
     6301 ttggtactat tttttacatc atcattattt aaaattcttc ccgcatctat ccttaaacct
     6361 tctatagcaa aattatttac ccctactcct tcagctcttg cgcttaaaga aatattggta
     6421 taagttgcca ctcctgaagt atttgaatga gcatcaactg cttctaaata ttctaaagat
     6481 cttagcgttt ctaaatcact aaaattaagc cttgttttac ccgaacgcaa atccccaaat
     6541 ccttttccag ggcgaatttc aatagtattt gtcccaagtc ttgcaataga ctcaagcact
     6601 ttagcttgag agcctaatcc taaagctaca acacaaacta cagaagcaat acctatgatg
     6661 attccaagca tagttaaaat agaacgaagt ttgtgtgcaa gtatggaaga ataagctatc
     6721 ttaaaacatt caaaggcttg atttttaagc aaagtaagtg tttttttctc tttgggcatt
     6781 gtttttaaaa taagtttttc ttgagctttt tcctttttag tatcgcttaa aatttctcca
     6841 tctttaatct ctataaccct tttagcttgt gctgcaattt ttggatcgtg agttactaag
     6901 actatagtat gaccttgctc gttaagtttt tgtaaaattt caagcaccat aataccgctt
     6961 ttactatcca aagctcccgt tggctcatca gccaaaataa gctctccgcc attgattaaa
     7021 gctcttgcta tagaaacgcg ttgttgctgc cctccgctta attcgtttgg cttagaatct
     7081 aacttgtgag ctaattctaa atcatttaag agttttttag cattttgact tctttcttgt
     7141 aaattttttc ccgcataaac tgcaggtaaa gaaacatttt ctttagcact aagcaagctt
     7201 aaaagattat atctttgaaa tataaagcct attttttcac gccttaatct tgctttttca
     7261 tcgttattaa gtttagtgac ttcatactca tcaaaaacat aagttccgct acttggcgta
     7321 tctaatgttc ctatgatatt taaaagtgaa gttttaccac ttccactttg tcctataata
     7381 gcaacaaatt cacctttttc tatacttaaa cttacatttt ttaaaatggc attttcacct
     7441 atattcttgc aaatattttt aagaaaaatc attaaaatct caacttcatt ttagtggcta
     7501 agccatcagc acttgagctt actatcaatt cttcattttc atttacgcct tctaaaattt
     7561 gagtattgat agaatcttta atgccaagtt tgacatattt tttaacagct ttttgatttt
     7621 ctaaaatttc aacataataa ccttttggat cgcttttaat tgcataagtt ggcactgcta
     7681 aaacagcctt tgcactcgct acgacaattt cattttgtat actcatacca atacgcaaaa
     7741 aatcatcttt attggctaca taaaattttg cgtaataata aatagcattt gatgagcttg
     7801 agcttgaaga actcgaactt gatgagcttg agcttgtact agaatcactc acttcagtat
     7861 cagctggatc tatacttgca atcttagcat gataagtttt ttgaggatca ttaagcaaag
     7921 aaaaatcaag ctctgttcct acttttatct tactcacatc agcctctgct atttccattc
     7981 ttacttccat ttcgtctaaa ttagctatac ggactatagt aggagtgttt tgattagcat
     8041 taactgtttg tccttcatct acagctacat taatcacaac accatccata ggagcagtaa
     8101 tggttgtata acctaaatct ttttgtgcat ttttaagagt gatttcaagc tgaactactt
     8161 gagcattaag ctctgcaaca ttggctttta aagtataata attatttttt tgagtttcta
     8221 aattttcaag agaacttgct ttagctgcat aaagtttttg ctctctttga tattgcttat
     8281 tcgcaatctc aagggcaact tttttactct ctaaattagc cttagcactt tcaagctgag
     8341 cttttgtaat atctaaatcg ttttgttgtt tatctttgtc aatttgagcg atcaaatcac
     8401 cttgctttac atgagttccc acatcaacat aaagttttat aatttgtcca ctaacttgag
     8461 cacccacatc aacttgatct ttggcatata cctttcctac tgcctctatg gtttgagata
     8521 tatctttttt ttgtattttt tgagttaaat agctgatttt ttcatcatta ttaaaaaaaa
     8581 taaaataagc tccaacactt ccaagtattg caattaaaac gattaaaata accttctttt
     8641 tcataataac aaatcctaaa gaaaaatcaa gattaaattt tactcatttt ttgtgaattt
     8701 tttgtgaatt tttaattcta ttttataaat ttaaaaattc taaagccatc atcacatcac
     8761 cttgcattaa gacttttaaa ttttcatcat cccaacaaaa agtagaacta tgatgcaaag
     8821 ctggatgatt taaatccttt gaaattccaa caaacacata agctcccatt ctttctcgtg
     8881 ttaaaaaagc aaaatcttca gcccccatgt caggtttaga agaaacaatg atattttctt
     8941 ctcctaagac ctttgcaaaa gcttttcttg ctattaaagc agctttttca tcattaatca
     9001 atggaggaaa ttctttagta tatttaagct tataatctcc accattagat tttgctgtag
     9061 cagcagccac ttcttctaga gaacttttta aaatatcttg tgttttatca tttaaaaaac
     9121 gcacggttcc ttttaaataa gcatttgtag gaataacatt ataagtagtt cctgcacaaa
     9181 tttgacctac ggtaatcacc cctgcttcat aaggggctaa acgcctagaa acaacacttt
     9241 gtatattatt tacaaattgc gttgccataa ttataggatc tatacaagtg tgcggatgag
     9301 ctccatgtcc tcctctgcca ataaattcca aatcaaaaat atccgttcca gccatcattt
     9361 cgccacttac aatttgagca gtattttcaa gcaaagaccc ccataaatga caaccaaaaa
     9421 ccgcatcaac ataaggattt tccaatacac ctgattctat cataggttta gctccaccgc
     9481 ttccctcttc tgcgggctga aacataaatt taatcgtgcc acaaaattca tctttgagct
     9541 catttaatat caaagcagct cccaaaagtc ctgctgtatg tccatcatgt ccacatgcgt
     9601 gcatcttacc atcaattttt gaagcataac ttagattagt tttttcttgt acaggcaaag
     9661 catccatatc cgctcttaaa agaacgcatt ttggtttttt ctgactcttc ttttttcctt
     9721 ctatagtagc taaaattcct gtttttgcaa tatttttttg atatttaatg ccaaactcat
     9781 ctaaaatttt acacactaaa cgagctgtat tttcttcttc aaattcaagc tcaggatgca
     9841 tatgaatttg atgtcttaaa tcaactactt tatcatagta ctttagtgct aaattttcaa
     9901 ccagcttttg cattcttttc cttaatctaa atcttttatt ttctcatctg cttttttact
     9961 gtcaagtttt tccaaattcg cctccatttt tcgtatttct tcttctccac tacgcactaa
    10021 ttttgcatca attttggaaa aatctccagt ttttttattt ggatattcta ccttagaaag
    10081 tataaaacgc aataaattta atcttgcttt tttcttatca tcagaagaaa taatagtcca
    10141 aggacaagtt ggagtattag atgctaaaag catagagtat ttagctaaag tatatttatc
    10201 ccataattct tgcgattttt gatccacagg agataattta tattgtttaa gcggatcgct
    10261 tcggcgtttt tcaaaacgtt ttttttgctc atcttttgat actgaaaaat aaaatttaaa
    10321 aaaaataata tcactatttg aaatcatatt ttcaaacaaa ggcacttctc ttaaaaaatc
    10381 tttatgttgt tgcggtgtac aaaaacccat aaccggttct actcctgcac gattatacca
    10441 agatctgtca aaaatcacaa tctcaccggc tgagggcaaa tgtgctatat aacgctgaaa
    10501 ataccactgt gttttttcca catcactagg tttttcaaga gccacaacgc ggcaaccacg
    10561 cggatttaaa tgctcaatca aacgtttaat cgccccacct tttccagccg catcacgccc
    10621 ttctataagt ataagaacct ttaaaccctt ggctttaaca tgattttgaa atttcaaaag
    10681 ctcaatttgc aaattcttta aatctttttc atattctatt gtacttttct ttcttttaac
    10741 agaaacataa atttcattct ttttaacaac cgcttgcgct tttggagaat tattttcttg
    10801 cattttcaaa cctttataaa gtatttaaag taaatttacc ataataaatt ataattgaag
    10861 ttaaaaatat aaggaaaaaa taagttttta ggaaatttat gcgtattttt ggtattattt
    10921 tattaagttt ttgtttatgt tttgcttcta tattatcttt aaatgaagct tttaatgtaa
    10981 aatcaaactc ttataataac tctatctcaa ttgatattga acttggaaaa gatatttatc
    11041 tttattctaa taaacttaaa ttatatataa acgaaaaaga tataagttct ttgattaatc
    11101 tacctcaaag ttctacaaga ggtaatgaaa atgtttatta tcaaaaatta aatttagctt
    11161 tgccaaattt attactagag cgctttgcaa aaaataccac aaatttaatc aaactcgaat
    11221 ttcaaggctg ttctgaacaa ggcttgtgtt ataatcctca aacttggtac tttgatctca
    11281 tttctaaaaa agatgctttt gaaatttcaa aaccttacaa agctcaaaaa acaggtaaaa
    11341 aaactaaaat tgaatctgaa gaaagctcta tagcaaattt tttagcaaca gataactttt
    11401 tttggatttt gctaagtttt tttggctatg gacttttact ctccttaaca ccttgtattt
    11461 tacctatgat tccgatttta tcttctctta tcgtagcaaa aagtaatgct aaattttcaa
    11521 aaaaatatag tttttttctc tcttttatct atgttttttt catgtcttta gcctatgcta
    11581 ttgctggagt tatagcaagt tttctaggag caagtattca aggaatttta caaaaaccta
    11641 ttattttaat tctttttgct ctaattttca tagcttttgc ttttgctatg tttggagctt
    11701 ttcgttttga attgccatta agatttcaaa cctttataca taaaaaaagc gaaaaaggga
    11761 agggagttgt aggtatagcc atcatgggat ttttatctgc tttaatagta ggtccttgcg
    11821 tagcagctcc tttagcaggt gctttaattt atatagccaa tacaggcaat gctttattag
    11881 gtggtagtgc actttttatc atgagttttg gcatgggtat acctttgctt ttcataggct
    11941 taggattagg ttttattaaa cctggttttt ggatggaaaa agtaaaaatt ttctttggtt
    12001 ttgttatgtt ggctatggct atttggatac tttctagaat tattgaagaa aattacattt
    12061 taattgccta tggaatttta ggtgtatttt ttagtgtttt tatgggaatt tttgaaaaaa
    12121 gttttacaat aatttctaaa attaaaaaaa gtattttaat tcttatttta gcttattctc
    12181 taagtatttt cctaggagga ctttttgggg ctaaaaattt cttaaatcct ttaaatttca
    12241 atactatatc tgcctcaaaa catgctttaa gctatgatta tatcaacaat tttgaacaat
    12301 taaagcaaga aatacaaaca aatacaaagc ctataatgct tgattttact gcatcttggt
    12361 gtgaaaattg caaactttta gatgaattaa cctttagcga tgaaagaatc atacaaaaaa
    12421 tgcaaaatta caaacttatc aaagttgatg taagcgaaaa taataatgaa caaattaaaa
    12481 ccatgaaaga atttaatgtt tttggcccac ctgttttaat tttctttgaa aatggaaaag
    12541 aaaaattaaa aatcacgggt tttatcagtg ctgatgattt attaaaaaaa atagaaccat
    12601 gaaaattcaa agtttgcaaa tagggaaaat taaaaactat aaaaatttcc aaagcgcatt
    12661 tattaaagat acttacctag aagaaacaca aattgatttt ctaggtgttt tagatgatca
    12721 aatagctgat aaaattcatc atggaggcta ccataaggct atttttgcca actcttgtca
    12781 aaactatcct atatgggaaa gatttcttaa taaaaagcta aattttggct caatgggtga
    12841 aaatttgagc atcgatgggc tttgtgaaca aaatgtttgc ataggtgata tacatcaatt
    12901 ttcaaatgca atactgcaag taagcgaacc tagaaaacct tgtgtaaaaa tttctaaaat
    12961 tcacaataat ccaaatttta cacatgaaat ttttaaaacg ggcttgagtg gatggtatta
    13021 taaagtttta caagttggac aaatacgaaa gcatgaaaac attaaaattt tagaaaaaaa
    13081 ttctacttca cttagtgtat ttgaactcaa tcaacttttt tactccccgc atcaaattct
    13141 taagcaaaat ccgaatttat tagataaatt agaaaaatta aactctctca tatctcaaaa
    13201 ttggcacgaa acgatacaca aacgcttaaa aaatacttac gatataagct atatggatag
    13261 cttataagtt tttaaagtta tttttaggta aaataattct ttttcgaaag gataatcatg
    13321 caaagacaaa catggagtag cacactaact tatattctaa cagttgctgg agcaaccata
    13381 ggatttggag caacttggcg ttttccctat cttgtaggag aaaatggtgg cggtgcttat
    13441 gtattagttt tttgtatagc catgattatc ataggcattc ctgttatttt agttgaaaat
    13501 gtcataggca gaaaagcgat gacaaatagc gtagatgctt tcaaacaaaa atggcaaagt
    13561 attggatata tgggactttt aggaagcttt ggcataatgg cttactacat ggtacttgga
    13621 ggatgggttt tagtttatat ttgggaatta accctaggga attttagtct tgccaatgta
    13681 gtaagcaaag aatttactca tcagtttttt aacgacaaaa tagccttcaa tcctttagga
    13741 gttggtattt ttaccactgt ttttgtaatt attaattata ttattttaaa aagaggcatt
    13801 atagatggta tagaaaaatc cgtaaaattt ttaatgcctt tattatttat ctgtcttatt
    13861 attgttgtag gacgcaattt aacccttgat ggagctatgg ctggagttaa attttatctt
    13921 gaacctgatt ttagtaaaat tttatcacca aaacttttaa tcgatgtttt aggacaagtc
    13981 ttttttactt tatccctagg ttttggggta atgataacac tttcatctca tcttaataaa
    14041 aatgaaaata tggcaaaaac cgctatttat acaggggttt taaatactat catagctgtt
    14101 ttggctggtt ttatgatttt tccagcactt ttctcagcgg gacttgctcc agatagcggg
    14161 ccttctttgg tttttgaaac tttacctata gcattttctc atatccattt tggcactatt
    14221 gtgtgtattt tattttttgt cttactcttg attgcagctt taaccacaag cttgccaatt
    14281 tatcaagtta ttattagcgt attagaagaa aaatttaaat attctaaaaa tctttctatt
    14341 aacctaactc tagggtttat cttcatactt ggcaatcttc cttgtattct aacttatggg
    14401 ccttggcgtg atattgttat catcaaagga aaaaacattt ttgatagttt tgatttcatt
    14461 agtggaaata ttttgtttgt tttaactgca tttttttgct gtatttatgt aggttggatt
    14521 ttaggcaaac aagaaagtct aaaagaactt agcaataaca atacacttaa aagttcatgg
    14581 tttggaattt ggttttatta tgtaaaatat atagtacctt tgattatttt aatcattttt
    14641 atctatggaa ttttaaactg attttttaaa tttatatctc tctaacatag tggaatttcc
    14701 taaaattcca ccttgatgta tataaagcaa tggttttttc cactcttgtt ttaatgctat
    14761 acttaatcct aaaatatcat acaacaagtc aaattctata ttgcacttta actttaaatc
    14821 catataaagc tcataaaatt ctttatacgg cttagcaaag tgatattttt tatcacttgt
    14881 taaaaattct aaatttgaaa aatcatagct tggatctaat gttaaaattt gttttttaag
    14941 atatttaata tcacctacac aagcgcaagt aaatacttta aatttagaat actttgccaa
    15001 aaaagctgcc gaagtgcctg tacccgaagg taaaaaaata tcaaaatcaa gctttaaact
    15061 ttgactttgc atttgaattt cttgagcaag ttccatatag ccatattgag cttctaaatt
    15121 agctatacct tgttctataa aaacatcatc ttttttacac aaagacaaag caaattgctt
    15181 taaggataaa gaatggatat tttctacaaa atcaacacca ttttctaaag ctaaagcata
    15241 gtttccacaa ggattattct taagaaaagt agaaattttt tcacaagcaa aaacaagctt
    15301 atatgatctt tgtttggcaa aaatacttaa tgccgccaaa gcattacttt ggcttcctcc
    15361 ataacttaca aaagattgat ttttaggata tctttgatgg atataaaaag caagtttcct
    15421 agctttattt ccattaattt cccctaataa atcatctctt ttaatataaa attcaaatcc
    15481 gttaaaattg attttttgta taggactaat tgttttaatg aaattcaaag aatttttcta
    15541 catcctttaa agcattatca tttttaatgc taaattttat ttctatgcga cgactcttat
    15601 ccttatcttc aactccgttg acaaacacag gatctgaaaa agaacgtcca cttgccatta
    15661 aaagcttttg aagcttatca ctcttataaa aagtatagat aaaattcatc acctcataag
    15721 ctcttttttg cgacaaatct aaattataaa tataagatcc atcactatca gtatgtcctt
    15781 caataataat attttcaatg ttagaaaaaa tttttggatc ttcaagaata gcatcaaaat
    15841 attcgcttaa gatttttctc aaacttgcct ttgcctcatt ttttaacaca taagaatctt
    15901 tatcaaaaag tacttcagca ggcaaagaaa tagatcctgt cttttcatct atagtgatat
    15961 tattatcaag cttactttgt aattccttgc ttaaattttc acgaatcaaa ccaagatttt
    16021 gcaccttttc tttagctttt tgaaaatctt cttgtaaatt tttaagctct tcatcttttt
    16081 tctctagttg acctagtaaa atcaaaattt gcttatcttt attatctaaa gttgagttta
    16141 aatctttact taactgcttg taatttgtaa tattagcctc taattctgct ttttgagaat
    16201 tagcaagatt taaagcacta gaagcattgt ttaaatcaga acttagttta aacactatgg
    16261 cttctttatt tctaagctct tctttactct cctctaagcg tgcctcttgt ttattgagat
    16321 tatctttgat ttcttttaaa tcactttgag ttaaaacata ttttacaaca atagcaccta
    16381 ttagcaaaat aaaaacaaac agcaatcctg ccattaaatc agcataagct atccaaaaat
    16441 tgctatcttc ttttgactca tttttcattt attttcttta tcttcatttt ttagctcatc
    16501 attgctttct tgcttagata tttctgcttg aatttcatct tgattttctt cagtcttaga
    16561 ctctgaaaaa tcttctattt gtttggtttc attttcttta ttctgatttt catccccaga
    16621 aagcttgctc atcatttgac ttgtttcttc atcaagtgct ttcatttctt ttttaagctc
    16681 atccatcatt ttgattttag catcaatact tttttcttct tcatatactt ctttaaattt
    16741 atgcatacct tcaaacaagc ttgctttaaa tccctcaaaa accttttctt gactttccaa
    16801 cattgctttt tcataaagtt caaaattttt accaaaacgc tctatttttt catcgaatgc
    16861 acttagtgtc ttatcaagat gatgaatttt atcactactg atatcaagca agcgattata
    16921 ttgttctgac attcttgtat tgatttcttt taaattttga ttgagcaaac ctataccatt
    16981 taacatttca ctataaagct ttccaagatc gcgttgatct ctttgtgctt tactaagctc
    17041 acccatggtt tgtttgatat gttcactact taatctaata gccttttctt ctacatttag
    17101 catatcttgg aaaataccaa attttctatc aatagcatga tcaagctctg caaaaaaatc
    17161 atcattacta acttgtttaa aaattgctcc aattttttca aaatgttgca aactttcagt
    17221 taaatatctt tgatcaagct cttcttttgt ccaaaaaaat ccacttgtag cgtttttttg
    17281 acgatttagc aaacgatcta ttttgctttt accatatttt tcaaaaaaca tccaccataa
    17341 tgcaagaaaa attccataaa ttgaaacata aaaagcagtt cccactccac ttaacaaatc
    17401 tgcaatttct tgttctaaag cggctgtatc actagaacta aaatttggca ttgaaaaagc
    17461 tatactgata aaagttccta aaattcccat cattggaaaa attgccgaac ctatactagc
    17521 aaaattctca tttcttgcac ccttaatata tgtataagca aagtcatcaa aattggcatt
    17581 tgatttcgtg tctttcccta tggcaagaaa atgcctcata atatgtcttt ttaaagcctg
    17641 tttaaattca tctttttgtt gttcaaaaat actatacgca tactcagcac tatgtctagc
    17701 aaaaatcaat gctgtaaaaa aaatcacacc tgtcataata accgtatgta attcgacctt
    17761 aaagtcaatt acattaaaat aacccaataa aatcaaaata taaagaaaag ctggaataaa
    17821 aataatttta aaataaacca aagaacctct tgcatctttg ccttcaggca aaacaagttc
    17881 tgaaatttca tctgatttaa tatccatgaa accaatacct cattaaaaat tttattttaa
    17941 agattgctac ttaatttgat aaaaattttt aaaacaaaat aaaactaagc ttttaaaatg
    18001 cttagttttt gtttatacag tttaaatctt caaaagcgat ttcaagacgt tttatcatgc
    18061 tttcttcacc gcttcttaac caaacacgcg gatcatagta ttttttattt ggcttgtcat
    18121 caccttctgg atttccaatt tgtccttgca aataagccct atttttaagt tcatattcac
    18181 gcaccccatc ccaaaaagcc cattgagtat ctgtgtcaat attcatctta attacgccat
    18241 agcttactgc atttttaata tcttttagct cactaccgct accgccatga aatacaaaat
    18301 ttataggctt atcgctattt aaagcaaatt tatcttttac aaatttttgc gaatttttta
    18361 aaatttcagg ttgtaagcta acatttcctg gcttgtaaac tccatgtaca tttccaaagc
    18421 ttgctgcgat tgaaaattta tcactaattt ttccaagtct ttcatatgca agagctacat
    18481 cttctggttg ggtataaagc ttggaattat caatacctgt attatccact ccatcttctt
    18541 cgccacctgt acaacctaat tctatttcaa gcgcgacacc taaagcatca agtttttgaa
    18601 gataaacttc acaagtgcta agattttctt ctaaactttc ttcgctaaga tcaagcatat
    18661 gagaactaaa taaagcttgt ccatgggttt ttttatattg tgcatttgcc tcaataagcc
    18721 catcaatcca aggcaaaagt tttcttgcag catgatcagt gtgtaaaatc acaggtacac
    18781 cataagcttt agcaagtaaa tgtacatgtt tagccccact aattgcacct aaaacttctc
    18841 cattaggaca atttttccct gcataaaatt ttgccccacc atttgaaaac tggataataa
    18901 ctggagagtt aacttttttt gcagcttcta aaactgcatt aatagaatca gttcctacaa
    18961 cattaacagc agggatagca aaaccctctg ctttagcata gtcataaatt ttattaagct
    19021 catctccgct aatcacccct gcttttacaa tgtctaaaac acccattatt tatattccac
    19081 tttagcacta tttaagagat cttggccttt ttgattgata acttttttaa attcttcaaa
    19141 tttaagtccg ttttcaatac cttgttttac ttcatcaaat ttgatttgac ctttagcttg
    19201 cgaattttct tttaagatta catgataacc aaaattcgtt tttaccggag ttgtagtaat
    19261 agtaccattt ttaagcgcga aagcagcatc tgtaaaaggc tttaccatag ttgattgatc
    19321 aaaccaacca agctcaccac cttggttttt tgaacctgga tcaattgatt tctctttagc
    19381 aagctcgcta aatttagcat ctagttcttt accttttaaa cctttaagtt cgttaataat
    19441 atccttagct tctttttctg tcgctactaa gatatgtttt gcttgcactc ttgcaggttt
    19501 tacatatttg tctttatttt gatcataaaa agctttaact ttagccgcat caattttaat
    19561 agtatttaaa attttctctt gataaacatt aacaagtatt gcatcttttg cacgatcaag
    19621 ttcttttgtg tataaagggt ctttttctaa attttgtttt ttagcatctt gcaaaattaa
    19681 atcttgcata atatattgct gaataagagc ttttttttga ttatctggca aagttttaaa
    19741 atcctgtcct ctaagcatag
//
LOCUS       DARGED010000016        19658 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.016, whole genome shotgun sequence.
ACCESSION   DARGED010000016 DARGED010000000
VERSION     DARGED010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19658
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.016"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            82..426
                     /locus_tag="SFZ84_000474"
     CDS             82..426
                     /locus_tag="SFZ84_000474"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202624.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKSSNQTHIISLKQSDDEFLNLL
                     FSFLVPQNDEDKNFIEKTRTKIKRNEHNIALIKNPNFNALIDTGFLDTIDTLKKNYIS
                     TKPILKISLILS"
     gene            417..878
                     /locus_tag="SFZ84_000475"
     CDS             417..878
                     /locus_tag="SFZ84_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8202625.1"
                     /translation="MILTHAHPDHIEALMSEENLFPKAQILIDKKEYDFWIKSDRQEI
                     KNTLLKLKNIEFINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYD
                     IQIPKPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHASFIEPEFLD"
     gene            966..1184
                     /gene="infA"
                     /locus_tag="SFZ84_000476"
     CDS             966..1184
                     /gene="infA"
                     /locus_tag="SFZ84_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG8202626.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1356..1469
                     /gene="rpmJ"
                     /locus_tag="SFZ84_000477"
     CDS             1356..1469
                     /gene="rpmJ"
                     /locus_tag="SFZ84_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG8202627.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1472..1837
                     /gene="rpsM"
                     /locus_tag="SFZ84_000478"
     CDS             1472..1837
                     /gene="rpsM"
                     /locus_tag="SFZ84_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG8202628.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1847..2239
                     /gene="rpsK"
                     /locus_tag="SFZ84_000479"
     CDS             1847..2239
                     /gene="rpsK"
                     /locus_tag="SFZ84_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG8202629.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2267..2893
                     /gene="rpsD"
                     /locus_tag="SFZ84_000480"
     CDS             2267..2893
                     /gene="rpsD"
                     /locus_tag="SFZ84_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG8202630.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2906..3919
                     /locus_tag="SFZ84_000481"
     CDS             2906..3919
                     /locus_tag="SFZ84_000481"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG8202631.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3923..4276
                     /gene="rplQ"
                     /locus_tag="SFZ84_000482"
     CDS             3923..4276
                     /gene="rplQ"
                     /locus_tag="SFZ84_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG8202632.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4449..5348
                     /gene="hisG"
                     /locus_tag="SFZ84_000483"
     CDS             4449..5348
                     /gene="hisG"
                     /locus_tag="SFZ84_000483"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG8202633.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5356..6642
                     /gene="hisD"
                     /locus_tag="SFZ84_000484"
     CDS             5356..6642
                     /gene="hisD"
                     /locus_tag="SFZ84_000484"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG8202634.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6639..7697
                     /gene="hisB"
                     /locus_tag="SFZ84_000485"
     CDS             6639..7697
                     /gene="hisB"
                     /locus_tag="SFZ84_000485"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG8202635.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7694..8281
                     /gene="hisH"
                     /locus_tag="SFZ84_000486"
     CDS             7694..8281
                     /gene="hisH"
                     /locus_tag="SFZ84_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8202636.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8278..9009
                     /gene="hisA"
                     /locus_tag="SFZ84_000487"
     CDS             8278..9009
                     /gene="hisA"
                     /locus_tag="SFZ84_000487"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG8202637.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            8994..9932
                     /locus_tag="SFZ84_000488"
     CDS             8994..9932
                     /locus_tag="SFZ84_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG8202638.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIIGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            9933..10700
                     /gene="hisF"
                     /locus_tag="SFZ84_000489"
     CDS             9933..10700
                     /gene="hisF"
                     /locus_tag="SFZ84_000489"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8202639.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10702..11325
                     /locus_tag="SFZ84_000490"
     CDS             10702..11325
                     /locus_tag="SFZ84_000490"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG8202640.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLDRLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11350..12510)
                     /locus_tag="SFZ84_000491"
     CDS             complement(11350..12510)
                     /locus_tag="SFZ84_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG8202641.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12536..13642)
                     /locus_tag="SFZ84_000492"
     CDS             complement(12536..13642)
                     /locus_tag="SFZ84_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG8202642.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            13765..14880
                     /locus_tag="SFZ84_000493"
     CDS             13765..14880
                     /locus_tag="SFZ84_000493"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG8202643.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            14877..15764
                     /locus_tag="SFZ84_000494"
     CDS             14877..15764
                     /locus_tag="SFZ84_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8202644.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            15742..16902
                     /locus_tag="SFZ84_000495"
     CDS             15742..16902
                     /locus_tag="SFZ84_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG8202645.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDANGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            16907..17407
                     /locus_tag="SFZ84_000496"
     CDS             16907..17407
                     /locus_tag="SFZ84_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG8202646.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            17486..17749
                     /gene="rpsT"
                     /locus_tag="SFZ84_000497"
     CDS             17486..17749
                     /gene="rpsT"
                     /locus_tag="SFZ84_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG8202647.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            17768..18835
                     /gene="prfA"
                     /locus_tag="SFZ84_000498"
     CDS             17768..18835
                     /gene="prfA"
                     /locus_tag="SFZ84_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG8202648.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(18849..19604)
                     /locus_tag="SFZ84_000499"
     CDS             complement(18849..19604)
                     /locus_tag="SFZ84_000499"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG8202649.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVTHVGASGNPHKFLHKH"
BASE COUNT         7297 a         2902 c         3337 g         6122 t
ORIGIN      
        1 attaccttaa attttaaaaa cattgttttt attatactat aatcatttcc aaaatattat
       61 ctaaaaaatt taaggataaa tatgtttaat tttataacca cccttttaaa aaccaatctt
      121 tattttttag aagaaaaaac cacaagcaaa agttcaaatc aaacccatat aatctcgctt
      181 aaacaatctg atgatgaatt tttaaattta ttattttctt ttttagtgcc acaaaacgat
      241 gaagataaga attttataga aaaaactcgc acaaaaatca aaagaaatga gcataatatt
      301 gctctgataa aaaatccaaa ttttaatgct ttaatagaca cagggttttt agatactatt
      361 gatacattaa agaaaaatta catatccaca aaaccgattt taaagatatc actcatatta
      421 tcttaacaca tgcacatcct gatcatatag aagctttaat gagcgaagaa aatctttttc
      481 caaaagctca aattttaatc gataaaaaag aatatgattt ttggatcaaa agtgatagac
      541 aagaaattaa aaacaccttg cttaaactta aaaatataga atttattaac cactctaaag
      601 atttgatctt tcaaaattca ggcattaaag ccatacctgc ttacgggcat accccaggtc
      661 aaaatgctat cataattgat gataaaatag tcttttgggg agatttactt catctttatg
      721 atatacaaat cccaaaacct aaaatcgcta taaaatttga tatagatcaa aatgaggcta
      781 tacaaacaag ggaaaaacta cttaaagaat ttaaagaaag aaaactcaaa gttataggga
      841 ctcatgcatc ttttatcgaa cctgaatttt tagattaatt acttaaaaat tactaaaaat
      901 taagtaaaaa ttttaataat ttttgctaaa attatagcct ttttatttca tgaaaggaga
      961 aaattttggc aaaagatgat gtaattgaaa ttgatggcac cgtacttgaa gcattgccta
     1021 atgcaaattt caaggttgaa cttgacaaca aacatgtaat tttatgtcat attgcaggaa
     1081 aaatgcgtat gcattatata agaataatgc caggtgataa agtaaaagta gaacttacac
     1141 cttatagcct tgataaaggg cgtataactt ttagatataa ataatctaag ttatttaaaa
     1201 gctaatttta gataaaatta gagtttttgc gacaaattac atcgaactat atgaagaagt
     1261 atttttaaaa tccaccactt attttgaaaa tagttggtta ttcataaaac ctgatgtagt
     1321 cgtaaatcaa gtggaattca ttcaaggaga cgctcatgaa agtgagacca tcggttaaaa
     1381 agatgtgcga caagtgcaaa gtagttcgcc gtaaaggcgt ggttcgcatt atttgcgaaa
     1441 atccaaaaca taaacaaaga caaggataaa catggctcgt atcgcaggtg tggatttacc
     1501 aaagaaaaaa agaattgagt atggactaac ctatatttat ggtataggac ttttcacttc
     1561 aagaaaaatt ctagataaag taggaatttc ttatgataaa agagttcatg agttaagtga
     1621 agatgaagca gcagctatcc gtaaagaaat tcaagaaaac tatatggttg aaggggattt
     1681 gagaaaacaa gttgctatgg atattaaagc acttatggat ttaggaagct ttagaggctt
     1741 aagacacaga aaaggcttac cagttcgcgg acaaaaaaca aaaacaaacg caagaactag
     1801 aaaaggtaag agaaaaactg ttggtgcaaa atcataagga taaatcatgg caaaaagaaa
     1861 aatcgtaaag aaaaaagtag ttaaaaaaaa tatagcaaaa ggtattgttt atatcagtgc
     1921 gacttttaac aatactatgg ttacagtgac tgatgaaatg ggaaatgcta tcgcttggag
     1981 tagtgcaggt ggtttaggat ttaaaggttc taaaaaatca actccttatg cagcacaaca
     2041 agcagtagaa gacgctttaa ataaagcaaa agaacacgga attaaagaag taggcattaa
     2101 agtacaagga ccaggaagcg gtagagaaac tgctgttaag agtgtaggtg ctatggaagg
     2161 aatcaaagta actttcttaa aagatatcac tccattagct cacaatggtt gcagaccgcc
     2221 taagcgtcgt cgtgtctaag atataagaaa aatttaggag aatattatgg caagatatag
     2281 aggaccagta gaaaaattag aaagacgctt tggtgttagc ttagcattaa aaggagaaag
     2341 aagactagct ggcaaaagtg cactagacaa acgcccttat gcgccaggac aacacggagc
     2401 aagaaaaggt aaaattagtg agtatggact tcaattaaga gaaaaacaaa aagctaaatt
     2461 tatgtatgga gtaagcgaaa agcaattccg tcgtttattt gctgaagcag caagaagaga
     2521 aggaaataca ggggtattac ttatccagct tttagaacaa agattagaca atgtggtata
     2581 tagaatgggt tttgctacaa cacgtcgttt tgcaagacaa cttgtaacac atggacatat
     2641 tttagtaaat ggtaaaagag tggatattcc tagctttaga gtagaagcag gtgctaaaat
     2701 cgaaatcatc gaaaaaagca aaaacaatcc tcaaataaca agagctatcg aacttacagc
     2761 acaaactgga atcgttgctt gggttgatgt tgaaaaagat aagagatttg gaattttcac
     2821 aagaaaacct gaaagagaag aagttgtcat tccggttgag gaaagattta tcgttgagct
     2881 ttactctaag taataggggc taaatatgag aaatattaca acatctgctt atacgccaac
     2941 agaatttaca atagaaaaca ttagtgatac tgtggctaaa atcagtgctt ggccttttga
     3001 gatcggctat ggaatcaccc tagcccatcc tttacgccgt ttgctttaca ctagcaccat
     3061 aggatatgct ccaactgcga tccatattga tggcgtagct catgaatttg atagcatgcg
     3121 tggtatgctt gaagatgtag cactttttat cattaatcta aaaaaactac gctttaaaat
     3181 taaaggcgaa tcaaataaag aaatagtaga atttagcttt aaaggctcaa aagaaattta
     3241 cggcaaagat ctaaataatg atcaagtaga ggtagtaaac aaagacgcct atctagcaac
     3301 tatcaacgaa gatgctgaac tcaaattcac attgatcgtt gaaaaaggta ttggctatgt
     3361 accaagcgaa gaaattaaag agcttataaa tgatcctaaa tttatagctt tagatgcttt
     3421 ctttacacct gtaagagaag caacctatga tattgaaaaa gttttgtttg aagataatcc
     3481 tgattatgaa aaagtggttt taactgtaac aactgatgga caaatcactc caaatgaagc
     3541 ttttcaaaat gctctagaag ctatgtataa acaattatca gtatttgata aaatcaccaa
     3601 tgttagaagc gtaattaaaa atcaagcaac aagcaatgaa ctagaaaata ctaaattatt
     3661 gcaaaacatt acagatttaa atttaagtgc tagaagttat aattgtcttg aaaaagcagg
     3721 agtagtttac ataggcgagc ttgctttgat gagtgtaagt gaacttgcag ggcttaaaaa
     3781 tttaggtaaa aaatctcttg atgaaattaa aaacatcatg gaaagcatag gttttcctgt
     3841 gggaacttct aagcttagcg ataataaaga aatacttaaa aataaaatcg cagaattaaa
     3901 agcacaaaac gaaggataaa gaatgagaca taaacatgga tatagaaaac ttggcagaac
     3961 ttcatctcat cgtgctgcct tattaaaaaa tttaactata gctttagtaa atagcggaaa
     4021 aatcgaaact actctaccaa aagctaaaga attaagaggt tatgtagaaa gattgattac
     4081 tagagcaaga cttggagatt ttaacgctca tagagcagtt tttgcttcat tacaagataa
     4141 aaacgctact aataaattag tgactgaaat tgctccaaaa ttcaaagatc gcaatggtgg
     4201 atatacaaga atcatcaaaa caagaattcg ccgtggtgat gctgctgaaa tggctttcat
     4261 cgaatttgta gcttaatcaa atcctagctt ttgctaggat taatacttca attaaatacc
     4321 ttaaaaataa aaagttttaa ataattattt taaataaaat taaatttatt tattttctaa
     4381 aacccttgct aaaaattcaa ctacttatgc taatataagt ttttaatttt taatttcaag
     4441 gatatgttat gcaagaaaac actcgtttac gcattgcgat acaaaaatca ggtagacttt
     4501 caaaagaatc catagagctt ctttcagaat gtggtgttaa aatgcatatc catgaacaaa
     4561 gcttgatcgc tttttctaca aatttaccca tagatatttt acgcgttaga gatgatgata
     4621 tccctgggct tatttttgat ggggttgtag atttaggcat tataggggaa aatgttttag
     4681 aagaaaatga acttgaacgc cagtctttag gagaaaatcc aagctataag cttttaaaaa
     4741 agctagattt tggatattgc cgtctttctc ttgccttacc tcaagaaaat aaatttcaaa
     4801 atttgaaaga ttttgaaggc ttaaggatag ctacttctta tccacaactt ttaaagcgtt
     4861 ttatgaaaga aaatgggatt aattataaaa attgtacgct tacaggttct gttgaagtag
     4921 cccctagggc aaatttagcc gatgcgattt gcgatcttgt ttcaagcggg gcaactttac
     4981 aagcaaacaa tcttaaagaa gttaaagtca tttatgaatc tcgtgcttgt ttgattcaaa
     5041 aagaaaatgc tttaagtaaa gaaaaacaag ccttagtgga taaaattatg ttgcgtgtag
     5101 caggagtaat gcaagcaaga gaatctaaat acattatgct tcatgctcca aaagaaaagc
     5161 ttgataaaat tcaagcccta cttccaggag ttgaaagacc gactatctta cctttagcac
     5221 acgatgaaaa aaatgtagct ttgcatatgg taagtaaaga aaatcttttt tgggaaacca
     5281 tggaggcttt aaaagaagaa ggtgcgagtt cgattttagt tctgcctata gaaaaaatgt
     5341 taaagtgagt aaaaaatgca aattttagta tatgataatt tggatgaaaa acaaaaagaa
     5401 gaagcgttaa aacgccctgc tataagtgcg aaagatgaaa tttcaaaaat agtaagttct
     5461 atcattaaag aagtgcaaga aaaaggcgat gaagctttga tagaacaagc tttgaaattt
     5521 gataaggctg aaatttcaaa gattaaaatc actcaagaag aaatcactca agcaagcaag
     5581 cgtttagata aagatttaca agaagctatt ttagtggctt atgaaaatat caaaaaattt
     5641 cacgaagccc aaatcccaca tgaaatcgct cttgaaacta caaaaggcgt taaatgtgaa
     5701 gttttaacac gccctataga aaaagtagga ctttacatac cagggggttt ggcacctttg
     5761 ttttcaacgg ttttaatgct agctattcct gcaaaaattg caggttgtga aaaaatcgtt
     5821 ttagcaagtc ctgcaaaaat caatgatgct gtgctttttt gtgctaagct ttgtggcgtg
     5881 gatgaaattt atcaaatggg cggtgcagga gctatagcag ctttggctta cggtacccaa
     5941 agtgttttaa aggtggataa aatttttggc ccaggaaatg cctttgtaac cgaagcaaaa
     6001 cgccaagtaa gtagtgatat aaacggagca gctattgata tgcaagcagg acctagtgaa
     6061 gttttagtca tagctgatga tttagctaat gaaaaatttg tagctagtga tttgctttca
     6121 caagctgaac atggtgcaga ttctcaagtg attttagtgt gtttaagtca agattttgct
     6181 aaaaaagcaa gtgatgaagt ccaaagtcaa ttagaacttt tgcctcgcaa agaacttgca
     6241 agcaaaagca ttgctaattc acgcattatc atagctaaag atttaaatca agccttagaa
     6301 atttcaaatc tttacgcccc tgaacatttg atcatacaaa ctcaaaatcc acgagaactt
     6361 ttaaaaggtg taaaacacgc aggatcagta tttttaggag cttattcccc agagtctatg
     6421 ggtgattatg caagtgggac aaatcatgtt ttacctactt atggacttac taaaacgcat
     6481 tctagtttag gtttggcaga ttttagtaaa agaatgaccg ttcaagagtt aagtaaagaa
     6541 ggttttttag ctttaggtaa aagtgttgaa attttagcac aaaatgagca tttagacgcg
     6601 cacaaaaatg cagtaacttt tcgtttagaa agcttaaaat gagtcaaaaa atccttttta
     6661 tagatagaga tggcacttta atagaggagc caaaaagcga ttttcaaatc gatactcttg
     6721 aaaaattgcg ttttgaaaaa gatgctattc ccactctttt aaaactaaaa aaatttggat
     6781 ttaaatttgt tatggtaagc aatcaagacg gtcttggaac accaagtttt ccaaaggaaa
     6841 attttgaaat cgctcatgaa aaaatgcttg atattttaaa aagttgcggt atagaatttc
     6901 aagatatttt tatttgtccg cattttgaaa atgaaaattg tgcttgcaga aaacctaaaa
     6961 ctgctatgtt agaagagtat atcaaacacg aactttatga taaggagcaa agttttgtta
     7021 taggagatcg tgagagtgat atgatcttgg cttcaaattt aggcgtgcgt ggtttaaaat
     7081 acggcgaact ttcttggaaa gaaatagaaa atgaaatttt aagttctttt agaagcgcga
     7141 gttatcaaag aactactaaa gaaacagata taaaagtaaa ggtatgctta aatgggggta
     7201 aggttagcat taaaacaggt attgattttt ttgatcacat gttagagcaa atcgctgtac
     7261 atggaggtat agggcttgaa atttcttgta aaggagattt ggaaatcgat gagcatcata
     7321 gcgttgaaga tgtagcctta gcacttggag cttgtatcaa aaaagcttta ggggataaaa
     7381 tcggcattgc aagatatggt tttgctttac ctatggatga gtgtttggca agttgtgcga
     7441 tggatttttg caatcgtccc catttagtct ataaagccaa atttaaaaaa tctcatttag
     7501 gggctttaag cacagaaatg atcgagcact ttttttattc tttaagctat gctatgggcg
     7561 tgagtttgca tttaaaagtt aaaggcaaaa acgatcatca taaagccgaa gggcttttta
     7621 aagcctttgc aaaagctttg aaaatggcag taaaaataga aagtgaaaat ttagccagct
     7681 ctaaaggagt gatatgaaaa tcatcatcat cgatacagcc tgtgcgaatt tagcatcttt
     7741 gaaattttgt ctagatagat taggttttaa tgcaactatc agtagggatt taaaagaact
     7801 tgaaagtgcg gataagcttt ttttacctgg agtgggtacc gcaaaagaag caatgaaaaa
     7861 tttagaacaa tttaatctta ttgattttat tcaaaatacc aaaaaacctt tgcttggtat
     7921 ttgtttaggt atgcaaattt taggaaattt ttctgaagaa ttaaatcaag aaaccttaaa
     7981 actcatagat tttacaactc aaaaatttaa agctaaagaa ggctttactt ttccacatat
     8041 gggatggaat gaagtttata gctctcatgc tttgtttaaa ggcttagaag gggcttattt
     8101 ttattttgtg catagttatt gtgtaggact tgggaaatac actatagcag attgtgagta
     8161 ttcgcaaaaa tttagcgcaa gcgtaatgaa agataatttt tacggagtgc aatttcaccc
     8221 tgaaagaagt agcgaggctg gggaaatttt aatttcaaat tttattaagg atataggatg
     8281 actcaaatca tacccgcact cgatcttata gatggcgaag tggtgcgtct tgtaaaaggg
     8341 gattacgaac aaaaaaaagt atataaatac aatcccttaa agaaatttaa agaatacgaa
     8401 aaagcaggag cgaaagaact tcatcttgta gatcttacag gtgcaaaaga tcctagcaaa
     8461 agacaatttg ctttgataga aaaattagcc aaagaggtca gtgtcaattt gcaagtaggt
     8521 ggaggtatac gctctaaagc agaagttaga gctttgcttg attgtggagt aaaaagagta
     8581 gttataggat ctatggcaat taaagatgcg actttatgtc ttgaaatttt aaaagaattt
     8641 ggtagtgaag ctatagtttt agccttagat acgattttaa aagaagatta tgttgtggct
     8701 gtaaatgctt ggcaagaagc aagcgataaa aagcttatgg aagttttaga tttttatagc
     8761 aataaaggct taaaacacat actttgcaca gatatttcaa aagatggcac catgcaagga
     8821 gtaaatgcaa gactttataa acttatccat gaaatttttc ctcatatttg cattcaggca
     8881 agtggtggag tagcaagctt aaaagacctt gaaaacttaa aaggaatttg tagtggggtt
     8941 atcgtaggaa aagctttatt agacggagtt tttagtgtag aagaagggat aagatgtctg
     9001 gaaaattgac ctataaagaa ttaattatag aagttttaaa acaaactaaa aagcctttaa
     9061 atgtgagtga aatttggcaa aaagctcttg aaaaaggctt agataaaaag ctttctagta
     9121 taggacaaac acccactcaa acaatttgga ataggttgct tacagataaa attaactttc
     9181 ttaaaacctc aataaaacct acaacttttt ggctaaaaga aagagaaaat gaacttttaa
     9241 agcttgataa taaaaatgaa attactaacg aaaaacaaga aaaaaataaa tttcatgaaa
     9301 gagatttaca ccccttgctt gtaaaatttt tatatgaaaa tttagatttt aatttaaatt
     9361 gcaaaacaat ttaccatgaa caaagcaaaa agggtaaagg tggggaagat aagtggaatt
     9421 atcctgatat tataggggtt tattttcctt atgatgatta tgaaaaagaa accataacac
     9481 ttttagaaaa tatcaaacaa aacagctata aacttttttc ttttgaactt aaaattgctt
     9541 taaatttttc aaatttaaaa gaatgctatt ttcaagctgt aagtaattct agctgggcaa
     9601 atgaaggcta cttggttgtt ttacaagaaa ttgatagcga agttttaagc gagttaagac
     9661 gcttaaatca aagttttggc ataggagtga taaaacttga aaaagatatt tcaaattctc
     9721 aaattttaat tagtgcaaaa gaaaaagaac ttgatattca aacactaaat atgctgatca
     9781 ataaaaatcc aaattttaaa gaatttattg atgatataaa caaacaaatt aaagtgggca
     9841 aagaagcaaa aattcaagct aattttgatg aaattaaaag cgatgaagaa atggaaaaat
     9901 atcttaaaga aaaatgtatt ttggagaaat aaatgcttac aaaacgcata attgcatgtt
     9961 tagatgtcaa agatggcaga gtagtaaaag gaacacaatt taaaaaccat aaagatatgg
    10021 gagatatcat agagcttgct aggtattatt ctcaaaatgg tattgatgag cttgtttttt
    10081 atgatattgc tgcaagtgct agaaaagaac gcatatcaag agaatgggta agtgaagtag
    10141 caaaaaatat caatattcct ttttgtgttg cagggggtat taaaagcgaa gaagatgcag
    10201 ctgaactttt ggctaatggg gcagataaaa tttctatcaa ttctcctgct ttaaatgatc
    10261 caagcctaat cacacgcctt gctaaaagct ttggcgtgca atgcgtagta gtagggattg
    10321 atagttttaa agatgaaaat ggaaatttaa aagtatttca atacacaggg gatgaaaaaa
    10381 caagtaaaca tagtggaaaa agcactttag aatgggttaa aaaagtgcaa gatctaggtg
    10441 caggcgaaat tgttttaaat atgatgaatc aagatggtgt taaaaatggc tatgatttag
    10501 aacaattaga agctgtatat aaaatttgta aagtaccttt gatcgcaagt gggggagcgg
    10561 gaaaaatgga acatttttta gaagctttta aactaggtat agatggggct ttagctgctt
    10621 ctgtttttca tcaaaaactt atagacatta aagaattaaa aatttatctt aaaaatcaag
    10681 gcttaagtat aaggatataa tatgcaaaat ttcaaagaac ttaatgaaaa aatcgcttgg
    10741 caaaaagtgg ataatctttt acctgtcatc atccaagatg caaaaacttg cgaagtttta
    10801 atgctaggct ttatgaataa tgaagcctta gaaaaaagct tagaaagtgg caaagtagtc
    10861 tttttttcac gcacaaaaca gcgtctttgg atgaagggtg aagaaagtgg aaatttctta
    10921 aatatcatag atttaagctt agattgtgat aatgacacgc ttttaatttt agcaaatcct
    10981 gtagggccta cttgtcatac gggcgatatt tcttgttttg aaaaaatttc taaaaatgca
    11041 gattttgttt ttctagacag acttgaaaaa cttattaatg cacgcaaaaa tgccgatgaa
    11101 aatacttctt atacagcaaa acttttcaaa agtggtacaa aacgcatcgc acaaaaagtt
    11161 ggtgaagaag gcgtagaaac agctttagca gcgacagtaa aagataaaga agagcttatt
    11221 tgtgaagcag cggatttaat gtatcattta agtgttttac ttgcagatgc aaatcttagt
    11281 ttctcagatg tgatttcaaa gttgaaagaa agacataaag cttaaagctt tatgtaaaat
    11341 aaatttatat caatgcaagg cttcattaag tttgactgct tttttattta aagctactat
    11401 catagcacca cttatagaat cttgacggaa atgtagtcca tttaaacctt taagctctaa
    11461 gcctttgtaa atttctttat caaaattaaa ataaggatta agtttagcaa gttcttcggc
    11521 atctttgagt aaaaatttcg ttccttctag cactgcaata cctgcatcaa ctatacaatt
    11581 atcccctaaa ggaattcctg tcactgaatt agcccctaaa agacaagcct tgcctacgct
    11641 tatagcattg ccacttgttc cacttaaaac acctaaaatc gaagctccgc cacctacatc
    11701 agaaccctct cctactatag cacttgaact aatacgccct tcaaccatac aagctcctgt
    11761 tgtacctgcg ttaaaattca cataacttgc ccctggcatg atggttgttc ctgctgctaa
    11821 agacgcaccc attcttactt tagaactttc taaaattctt gtattatcct cagggataat
    11881 atgtgctaaa aatcttggga atttatcaac aaaatcgatt tttggatatt gattgctcat
    11941 ttttaaacgc atttcatttg ctcttaaata ctcaagctcg ataggcttat catcactcca
    12001 agctacattg cttaaaagtc caaaagctcc atttaaattg atacttctta aaggtacttt
    12061 tttagtagaa agcaaataaa gttttagata aatactttct acacttaaag gttctttatc
    12121 ttcaaaaaga caaacaaaag aaaattcatc gtctttaaat ttatctttga taatctttaa
    12181 taaatcaata ttttgatgcc catcttcttc taaaaaaggt ttaaaacaag aaagtgcaaa
    12241 atcaatatct tctaatttca aagtttgcac aaactcactc gcattaaaat caatctccac
    12301 gcccctttgc ataaaagctt caagcatgat tgccgctgag ccaaaatttt gctcatagtt
    12361 aatcaaagca aaacttgctt gtaagatttt atttttattt aactgtcctc tatcaagcct
    12421 tgctatacca aaagctttag gttttttata gccacttttt tgctcgattt gtttgattaa
    12481 aagtaaaaaa tcttctttag tattaatcat tttcttttcc ttatccactt aatttttaat
    12541 gcgaacacgc actttttcca ttcatcacag gttgtatagc agaattatcc gcaccacctt
    12601 cattgttaat cttttctata aaactccaaa ttttttcagc cgccattaaa taacgccttg
    12661 aactcacact ttcagggtga taaaaactca caggcttgcc ttcatctcca ccttctctta
    12721 ctatcatttc tataggaatt tgtgctaaaa cttcactttt ataggctttt gccatatctt
    12781 cagctgttcc tttaccaaaa atatcatact ctttaccatt atcaggacat aaaaatccac
    12841 tcatattttc aatcacaccc gctataggaa tatgaagttt attaaacata tctaaagctc
    12901 ttttgctatc gtctaaagat acggtttgag gcgtgcttac acaaactcct gcagtaatag
    12961 gaatactttg cgcagaagta atttgtgcat cgcctgttcc tggaggcata tctaaaaaca
    13021 atacatcaag ttcaggccaa atcacatcag ctaaaagttg ctcgattgct ttcataatca
    13081 tagctccacg ccacataagg ccttgaccct cttcgatcaa aacccccata ctcatcatat
    13141 aaacaccatg agttaaaata ggctttaatc tctgccctac tacttcaggc tgagttttgg
    13201 tttcacctag cattcttgga atatttggcc cataaatatc cgcgtctaaa atacctactc
    13261 tttttcccat tttagccatg gaaattgcta aatttactgt agttgtagat ttacccacac
    13321 caccttttcc acttgaaacc atgatgaaat tttttacttg tggagcgata ttttttccac
    13381 ttcttgaatt acttttttct tcaggaattt ttggagtaat gatattaagt tcaatatttt
    13441 ttaaagccaa actcgataaa gcttcaataa tatttttacg aatttcatta gctacttcag
    13501 gatttgctga aacgatttct atatcaatga atacaccatc atcttgaatt ttaatatctt
    13561 ttacaaagtt aaaactcact atatcctttt caaaaccagg atattttaca gtttttaatt
    13621 tctctaaaat ttgttctttc atattttttc cttgtctttt aaaaaaatca attttactaa
    13681 taaaatgata aaatttagct ttttataagt gtataatatg gtaacattat aaaaaccaac
    13741 aatattaaaa agaggaatga aaaaatgagt gaaatgagcc tcattatgtt agcagctgga
    13801 aattctactc gttttaatac aaaggtaaaa aaacaatttt tacgacttgg aaatgaccct
    13861 ctttggcttt atgcaacaaa aaatttaagc tctttttatc cttttaaaaa aatagttgtt
    13921 acctctagta atatcactta tatgaaaaaa tttactaaaa actatgaatt catagaaggt
    13981 ggtgatacca gagcagaatc cttaaaaaaa gccttagagc tcatagatag cgaatttgtt
    14041 atggtaagtg atgtagcaag ggtattggtg agtaaaaatt tgtttgatcg tttgattgaa
    14101 aatttagata aagcagattg tattacccct gctttaaaag ttgcagatac aacacttttt
    14161 gacaatgaag ccttgcaaag agaaaaaatc aaactcattc aaaccccgca aatttctaaa
    14221 accaaattgc ttaaaaaagc cttggatcaa aacctagaat ttacagatga tagcacagct
    14281 atagctgcaa tgggtggaaa aatttggttt gttgaaggtg aagaaaatgc aagaaaacta
    14341 acctttaaag aagatcttaa aaaacttgat ttgcctacac ctagctttga aatttttact
    14401 ggcaatggtt ttgatgtgca tgaatttgga gagaatcgcc ctttgctttt agcaggagtg
    14461 caaattcatc ctactatggg gcttaaagca cacagcgatg gagatgtttt agctcactct
    14521 ttaaccgatg cgattttagg tgctgcagga cttggagata taggagagct ttatcctgat
    14581 actgatatga aatttaaaaa tgccaactcc atggagcttt taaaacaagc ttatgataaa
    14641 gtcagagaaa taggttttga actcattaat atagacattt gcgtcatggc acaaagccct
    14701 aaacttaaag actttaaaca agctatgcaa agcaatatag ctcatacttt agatttagat
    14761 gaatttagaa tcaatgttaa agccacaaca acggaaaaat tgggttttat tggaagaaaa
    14821 gaaggtatgg cggtgcttag taatgtaaat ttaaaatatt ttgattggac aagattatga
    14881 aagttttaat tattgaaaat gaaatttatc tagcgcaaag cattagcatt aaactaagtg
    14941 atgctggata tagctgtgaa attattaact cgtttgatga atacaatggt gaaaaatact
    15001 atgacattat actgctttct acaaatacta ataattttct aaaagccgta ggtcagttta
    15061 aacatagtat tattattttg cttatttctt atataagtac agatacagtt tcaaatcctt
    15121 tgaaattagg tgctagtgat tatattcaaa aaccctttat gatagaagag ctgattagaa
    15181 aaataaagca ttatcaggat tttagaaaac tttcaatcct taataaagct tatcaaagct
    15241 atatcaaatc aagattagaa acaatcaaaa ttccagagta taattataaa aaattaaaac
    15301 ttccattgat attaaaatcc aacaagcaaa gcagtgctga tgcttttgtt tttaattatg
    15361 caaatgaatg tgacattact ctttctttta ttgatttaac atctacaaat tcagttgaaa
    15421 aagttatgaa acttcccaca gaaaacaatc tcttattttt gagtaatttt caagcattaa
    15481 aagcaacaga aaaggaaaaa ctcctagatt ttatacaaaa caaaaatgtt attttgcata
    15541 ccaattcaaa tacagatgat ttaaaaataa actgcattaa tttaaatgat aatgaaaaaa
    15601 atatcaatag caatgaaatt ttaactatag atgagtatgt aaaatatgtt attataaatt
    15661 accaaaatat atttcctgat actgatcttt caaaaaaatt aggcatttca cgtaaatctt
    15721 tatgggaaaa aaggaagaaa tatgaaatca gcaagaaaaa ataaaaacat taccatagat
    15781 caaaatgaat ttggcatctt gtcacttatt aaagaaggtt tgctaggtac ttgcactcat
    15841 ttaatgaatg aaaaagaagt caatgaaatc attaaatcag gaaaatttaa aggagaaagt
    15901 tttccctatc ccttaagctt tgcaccaaaa aatgctgaag aagcactaaa tgatataaaa
    15961 tctggcgata gaatcgatct catactagat gaaaaagtag taggacatat agattttaaa
    16021 agccaattta aaaataataa aaatttttct gatattttca gtcctaacac ttgctcttta
    16081 gaagacatgg gaacaacttg cataagtgga aaaatagaaa tttataattc tcaaattgaa
    16141 aaaataaaag aaaattttca acaaatcaaa aacaatctta atgcacaaaa aattaccgct
    16201 atagtttcaa gttttgatcc tttgcatcgt gcccatgaaa gaatgtttcg ttggactatt
    16261 gataaagcag atttagttgt aatttttctt gtagaatctt ttgatgcaaa tgggtttgaa
    16321 ttcgaactta aagaagctta tttgaaaaaa tttattcaaa actatcttcc accggataga
    16381 attttcattt ttccattaaa aaatattaat atttttcacg cccatttaaa tcctggctta
    16441 gaaagcatta tcgcaaaaag tctaggttgt accaaactag tagtaggaca aaatcataca
    16501 ggacttggaa tgttttatga tgataatcaa ccaaaaacca tacttgatga tttttccaag
    16561 gattatggca tagaagtgat tgttttgcct gaatttgtat tttgcgatca atgtcgcatg
    16621 attgttagca cgagatcttg ccctcatggt tgtcatcacc atttgcacta taattctcag
    16681 tctttaaaag atttactaag agcgggtatc attcctccag caattttcat gcgcaaggaa
    16741 gtatctagtg ttatcttaac ttctcttttt ccaaatagat taaaaaatat gcaaaaaatt
    16801 tataatgagc tttttccaac tgatggaatt ttagaataca aaaatgatga agaattttat
    16861 caaaaacttt tagaaattca tcaaatgtct tatatggtgt aataaaatgc aaaaattatt
    16921 tttaactttt ttttattcag gttctgtaaa aaaggcaagt gggacttttg gtactatcgc
    16981 tgctttaata cctgcttttt ttatacttaa atatctcggg attaatactt tgtttttact
    17041 aagcatttta atttttgttg caagtattcg tgttatagat gattatgaaa aaaaaacagg
    17101 aattcacgat gacaaacaca tagttatcga tgaggttgct ggagtttttc ttgcttgtgc
    17161 tattgcagca agtgttgaaa actcgatagt caattttatt ttggcttttg ttttattcag
    17221 actctttgac attacaaaac cttctattat tggtaagata gataaaaaag tcaaaggcgg
    17281 actaggtgta atgcttgatg atatgttagc aggattgttt gctggacttt taagtgcggt
    17341 aatttatgga tttttactta aatttaattt agttttttgg gatataaatt taaaagactt
    17401 attttgaaat tttgcttaaa ttaattaaat tttaaatttt attcttatat aatttagtct
    17461 ttaatttcaa aaaaggaaaa tataaatggc aaaccataaa tctgctgaaa aaagagcaag
    17521 acaaactatt aaaaaaacag aaagaaatag attctataga acaagactta aaaatataac
    17581 taaagccgta agagaagctg cagcaaatgg agataaaaat gctgctaatg aagctttaaa
    17641 agtagctaat aaaagcattc atgctatggt aagtcgcggt ttcattaaaa aacaaactgc
    17701 ttctcgccgt gtaagccgct tagccctttt agtaaataaa atcgcataat tttctatata
    17761 gtttttaatg ttagctagca aactagatcc ttttttaaaa cgctttgaag agttaaattc
    17821 tcttcttagc agttctgata taatcaacga tatcagtaaa atgactacac tctctaaaga
    17881 acaaaaaaat ttagaaccta tcgttttaaa agctaaagag tatttaaaaa ctttagacaa
    17941 tatagaagaa aataaagctt tgctaaacga tccagaactt ggggaacttg cgaaagaaga
    18001 actaaaaact ttagaagaat taaaaccaaa gcttgaagaa gagattaaaa ttttacttct
    18061 tcctaaggat cccaatgatg aaagaaatat ttttcttgaa attcgtgcag gcgcaggtgg
    18121 cgatgaggca tctttatttg taggagatct tgtaaaagct tatgcaagat atgctgaaaa
    18181 tcgtggctat aaacttgaga ttgtaagttc tagtgaagga agtgtaggtg gatttaaaga
    18241 aatcatcatg cttgttaaag gaacaggagc ttattcaaga cttaaatatg aaggtggaac
    18301 gcaccgtgtt caaagagttc ctcaaacaga atcccaagga cgcgtgcata cttctgctat
    18361 caccgtggca gtaatgccag aagttgatga tatagaaatc gaaatcaatc caaacgatct
    18421 taaagttgat gttatgcgat cttcaggaca tggtggacaa agtgtaaata ctactgattc
    18481 agctgttcgt atcactcata tccctacagg tatagttgta gtcaatcaag atggaaaaag
    18541 ccaacacaaa aataaagaaa gtgcgatgaa agtcctaaaa gcaaggcttt atgaaatgca
    18601 agagagtgaa agactggcaa aagaaagtga agcaagaaaa tcacaagtag gaagcggaga
    18661 tagaagtgaa cgcattcgca cttacaattt tccacaaaat cgtatcagcg atcatagaat
    18721 aaatcttact ttatatcgct tagatgccat tatgcaagat gggctttttg atgaaatcat
    18781 agaaccttta atcactcatc atcaagccca agctttacaa gaacaaaatt tataagattt
    18841 tatataaatt aatgcttatg taggaattta tgtggatttc cactagcacc tacatgtgta
    18901 acatttccat tttctatatc ataagcttga ccaaaacctt ttacaaagcg tcctttttta
    18961 aattcaagct ttactagatg aaaatcaagc atcttgcgta tagttttaat gcctccttct
    19021 cctccggttt gtttttcaaa ctcatcataa atttgatcaa atctttcacc tctctctaaa
    19081 aagcttgcat ttactctata gcgcaatctt ttgcgaagta tcacagaagc ggctttactc
    19141 tcatcctcta aaaacattat ttctatattg tttggattta ctttgatgtt gttaaaatgt
    19201 tcgcttactt cacttatata aatataattt ccccattgtg tgcttacaaa aggtgcatac
    19261 gagcaaacaa cttctccatt tgcatttaaa gttgccaaag ctacagaatt aaaacttagc
    19321 ataaattcat ttaattcttt ttctacgcca ctaaaatttt gctcgctctt tgcactcatg
    19381 caaagggata ttatagcatc tttaatcgtg ttttcatcgg cttttttagg aaattccact
    19441 cgtaaatttt ctttatcatt gtaaacaaga tctaagccat taaaatcaac actttttaga
    19501 aaaacatctt gtacttgctc aataccacca aattttttac aaagatcgac taaatttgat
    19561 ttatgatgat cattcatatg agaaataatg ctttcaaaat tcatttttat cctttcttga
    19621 ttttaaaata aaatattaaa aaaaatggta tcaattat
//
LOCUS       DARGED010000017        19559 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.017, whole genome shotgun sequence.
ACCESSION   DARGED010000017 DARGED010000000
VERSION     DARGED010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19559
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.017"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..350)
                     /gene="ysxC"
                     /locus_tag="SFZ84_000500"
     CDS             complement(<1..350)
                     /gene="ysxC"
                     /locus_tag="SFZ84_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein YsxC"
                     /protein_id="HEG8202650.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFI"
     gene            complement(347..808)
                     /locus_tag="SFZ84_000501"
     CDS             complement(347..808)
                     /locus_tag="SFZ84_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG8202651.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKIYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(790..1305)
                     /locus_tag="SFZ84_000502"
     CDS             complement(790..1305)
                     /locus_tag="SFZ84_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202652.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(1296..1784)
                     /locus_tag="SFZ84_000503"
     CDS             complement(1296..1784)
                     /locus_tag="SFZ84_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG8202653.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(1790..2617)
                     /locus_tag="SFZ84_000504"
     CDS             complement(1790..2617)
                     /locus_tag="SFZ84_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG8202654.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(2577..3695)
                     /locus_tag="SFZ84_000505"
     CDS             complement(2577..3695)
                     /locus_tag="SFZ84_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEG8202655.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLVTFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(3695..4510)
                     /locus_tag="SFZ84_000506"
     CDS             complement(3695..4510)
                     /locus_tag="SFZ84_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG8202656.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLDLSRKELLEICFNNSEKLFFKGY"
     gene            complement(4501..5745)
                     /gene="cbrR"
                     /locus_tag="SFZ84_000507"
     CDS             complement(4501..5745)
                     /gene="cbrR"
                     /locus_tag="SFZ84_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG8202657.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(5851..7374)
                     /locus_tag="SFZ84_000508"
     CDS             complement(5851..7374)
                     /locus_tag="SFZ84_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEG8202658.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            complement(7374..8234)
                     /locus_tag="SFZ84_000509"
     CDS             complement(7374..8234)
                     /locus_tag="SFZ84_000509"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG8202659.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            8325..10076
                     /gene="aspS"
                     /locus_tag="SFZ84_000510"
     CDS             8325..10076
                     /gene="aspS"
                     /locus_tag="SFZ84_000510"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG8202660.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKIAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            10073..10651
                     /locus_tag="SFZ84_000511"
     CDS             10073..10651
                     /locus_tag="SFZ84_000511"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG8202661.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            10661..11179
                     /gene="ppa"
                     /locus_tag="SFZ84_000512"
     CDS             10661..11179
                     /gene="ppa"
                     /locus_tag="SFZ84_000512"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG8202662.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            11221..11718
                     /gene="msrA"
                     /locus_tag="SFZ84_000513"
     CDS             11221..11718
                     /gene="msrA"
                     /locus_tag="SFZ84_000513"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG8202663.1"
                     /translation="MKNIILGGGCFWCIEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(11894..12733)
                     /locus_tag="SFZ84_000514"
     CDS             complement(11894..12733)
                     /locus_tag="SFZ84_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEG8202664.1"
                     /translation="MQNILSSFTQEKNVCVFTNTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDTKDKAILSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(12762..13145)
                     /gene="ruvX"
                     /locus_tag="SFZ84_000515"
     CDS             complement(12762..13145)
                     /gene="ruvX"
                     /locus_tag="SFZ84_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG8202665.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(13142..13915)
                     /locus_tag="SFZ84_000516"
     CDS             complement(13142..13915)
                     /locus_tag="SFZ84_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG8202666.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYGNALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(13905..14987)
                     /locus_tag="SFZ84_000517"
     CDS             complement(13905..14987)
                     /locus_tag="SFZ84_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG8202667.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNSN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQLESAVKLTQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKSVDLVYLSEIYGK"
     gene            complement(14991..16013)
                     /gene="ilvC"
                     /locus_tag="SFZ84_000518"
     CDS             complement(14991..16013)
                     /gene="ilvC"
                     /locus_tag="SFZ84_000518"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG8202668.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            16132..18066
                     /locus_tag="SFZ84_000519"
     CDS             16132..18066
                     /locus_tag="SFZ84_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG8202669.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQILRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIHDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYKNRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDKNLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALSDELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGLCIAKLDDEIKGADIILYDTRVNLLESVEVQIIEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            18059..19024
                     /locus_tag="SFZ84_000520"
     CDS             18059..19024
                     /locus_tag="SFZ84_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEG8202670.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKILVELCKNNTNNFF
                     LLELYDENSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFN
                     LKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            complement(19055..>19559)
                     /locus_tag="SFZ84_000521"
     CDS             complement(19055..>19559)
                     /locus_tag="SFZ84_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8202671.1"
                     /translation="FKNKENFKEMNFEWLYHKTFCFDSNLEKEFLNFIEVKKDEINKV
                     FSKWFVIRNEGFEEFKIYDNRKDEVTYAMGFEPDFIFFGKKNKDDDNFLSIQCFIETK
                     GEHLAIAKDAWKEEFLETLKGKIITTKDDKKLTLQSLPFFINKNFNINDKFLSSFDEF
                     VSFQDER"
BASE COUNT         6816 a         3324 c         2540 g         6879 t
ORIGIN      
        1 tgtataaata actttatcga ggttcttaat tttaaaaatt catctaagtt ttgattccat
       61 atttctttta aatttttaga aacctttgca taaccaaacc ctggtaaatc gataaaattg
      121 atattaaatt tttcttcatt tcttttgcaa gctacttcga aaaaatttat aagctgagtt
      181 tttccaggag ttgccgaact tttggctaaa tttttttgtt tacacaaaga attgattaaa
      241 gaactttttc cgacattaga acgccccaaa aatgctactt cactaaaatt tgagctcaaa
      301 ttctcatcaa atttcactaa agaagtgata aatttagcac taattatcat ttgtctttaa
      361 gatcaaacac aaaacgagca ggtttttgat ccttactctc cactcgataa atattagctt
      421 ttctatcgac tattatttta tcaccaaaaa gtttttgatt gcttccaagc tcatttatat
      481 aagcatgacc attaatctcg taagtatctt taataacatt ataaataaat ttatctccac
      541 tacctttata aattttacct tttaaaacaa tcttaaacct agcattttgc attgcttcat
      601 aacgaatagg tttgcgattt ttatccgtat aaataatcaa tttttcagaa tttaaaatat
      661 catcacctct aattacttct acatttccac taagaatact ttcaccctta ttttcatctg
      721 agtaaaaatt taaagctttt acttcaattt gagttgccca agttacactt acacaagcta
      781 acaataaaat tatttgtctt gcaaccacgc atttactcct tggatattta aaattttgtt
      841 ttttacatca tagtttaaag tatttccgtt aataatactt ccattgatca gagctttaaa
      901 attagtattt gtatgtaaaa ttttatcctt aggttggtat tctacctctt gagaaataat
      961 tttgacatta ttagaaccta tataagtaac atttccttca aacaaaacct tgctcatatc
     1021 tttattgaaa aactctaaac gattcgcact aagattaaaa tctaaattta aagtaataaa
     1081 atcattaaat tcatctctat ctgcatatct cacccaagaa tttgccttat aatatgcctt
     1141 aattgtacta gcattactct cataagcttt caaattttta gcctcaatat ttttaaaatt
     1201 taaagcatta gtttgcaaat tcaaagaata tggatcttgc aaacttaaaa tcgtaaaagt
     1261 aattgtaaaa agagcaatta aaattccaaa aatttttata gccaaagctt attccattct
     1321 tcttttagat gatttttttc tactaaaatt tctatcatct gtgctacagc agccttacca
     1381 ccttttttgc taagcactat gtctacattt aaatctttat gaccatcttt tggcttaaaa
     1441 ctaagtccta cactttcaag taaagcctta tcattaaaat aatccccaat agccgcacac
     1501 tgagaaaaat ctaaattaag tttttgtaaa atttcttttg cacaagctaa cttatctttg
     1561 ataccttgat ataaaatttc tatttttaaa tctttagctc ttttttcaac acaaggacaa
     1621 tttctacctg taataatagc aattttttta ccaagcttta gccaagcctc gatagccgct
     1681 ccatctttta catcaaattc tttaataaat tctccattag aagtataaat aatttttcca
     1741 tcagttaaac agccatctac atccaaaaaa atcaattctg tcataatttt tactctctta
     1801 caacaaatgc acctgcaaat gcaccacttg cagcaaaatc ccttgcttca tcttcacttc
     1861 taaagcctgt taagaaaacg cgatttaacc catccactga acttgtgcgt atagtagagc
     1921 tataagttct ataagtttta tatcttgctg ctatcgtttg tgctccagct gggtttttaa
     1981 aggctccaat ttgaaccatg aaatttccac cttcataaat ttgtccatta tttgcaatct
     2041 ctccactatt tccatagttt acattagaat gtacaatatt attacccgaa ttacttgatc
     2101 caaaccctat aacctcaagc cttactggag ctgttcctga agcaatcata tcaatttgac
     2161 tagcagctcc ttttgataaa tctataatac gattatttac aaaaggacct ctatcattca
     2221 cacgaacggt aacttgacga ttgttattta gattggttac ttttaagatg gtattcatag
     2281 gtaaagtttt atgagccgcg gttaaagcat tttgattata ggtttcgcca ttagaggttt
     2341 tcttgccgtg aaagcctggc ccataccaac tcgcaatacc atcagcagtt tcgcctactg
     2401 ctacaacagt aggataataa gttttaccgt tgatagtata aggcttcatc gttcctttag
     2461 tccctgaaga actaggactg cttttaaaat catttgaagg ataatacact tgagcattat
     2521 ccaagctaga aaaaaaacta gtgcctaaac aaccactaaa aaataaagcc cctagactaa
     2581 cggctgacaa ctttagtgta attgttttta tttgcatttt tattctcctt gattggtata
     2641 attaattttt gattaatgct aagatgattt tttgctattt tattgaattc tcgaatttca
     2701 tcaacactta tattataatt ttttgctatt ttatataaag agtcaccaga cttaacggta
     2761 taagttcttg tcataggtat agttgtatca acctttgcaa gtttttctgc tttaaaattt
     2821 ttatcaaaaa atgctacttt attaagtggt atatacatat aatacccttt accaggaggc
     2881 gtaaaattat gtttaaattg tggattatat ttcttaaaag ttacaagatc catatttaaa
     2941 tttttagcta tttcttttaa agatgcagaa gaaggcacat caacttttgc aaattcattg
     3001 cttaaagcat aattcattaa agacgcatct ttatctagta aaaaatccct atcattagct
     3061 aaaaaagcaa gcgttaaaat ctttcttata aaatttctag tttctaaaga aagatatttc
     3121 ttatcagggt tcaataaaac acttaaatca tcacttcctg cttgcttgat agcttgtctt
     3181 agcttgccat ttccgcaatt ataagctaaa agtgccaaat accatttgcc aaattcttct
     3241 tttagctctt ttaaataatt tgtagcggca taagttgact tgactggatc acgcctttca
     3301 tcaacataag catcgattct taaacccaaa tttctagctg ttggttgcat aaattgccaa
     3361 acccctacag ccttggcatt agaaacacta tgagttttca agcctgattc aaccatagct
     3421 agatacaaaa tctcatcagg aacttcctgc tgggctaaaa tttttcttat cataggagta
     3481 acttttgaaa aattttgcat actatctatt aaagtttgag catgttttga ttttatatct
     3541 tgttgagttt gcacaaaaat caaatcactg ataaaacttg gattaatatc taaatttctt
     3601 aaaacattca tttgtctttc ataaaattca ggagtattaa tttgtgcaaa aagaaaatta
     3661 aaacatatta aaaaacacaa taaaattttt ttcattaata acctttaaaa aataattttt
     3721 cagaattgtt aaaacaaatt tctagaagtt cttttcttga taaatccaat acttcacaca
     3781 ttttgtttgc tacaaattga gttaacaaag gttcatttct tttaccgcga taaggctctg
     3841 gagtaagata tggagcatca gtttcaagta gtagtctatc ttttggaatt ttaggtaaaa
     3901 tttcaactaa tttcttagca tttttaaaag ttaaaactcc cccaatacca aaataaaatc
     3961 catcttcaaa aagagttagt aaatgttcgc ttgcattaaa gcagtgtaaa actcctccta
     4021 caagatcctt agaataccca tgtaaaatct cataagtatc atgatttgct tctcttgagt
     4081 gaatgataac aggtttttta aattcaatag caagttcaag ctgtgcgata aaaatctttt
     4141 tttgattttc tttttctttt tgaatttctt cagcaagatc acttttaaaa cggaaataat
     4201 caagcccaca ttcacctaca gctacacact tttcatcgca taaatactgc cttaaaattt
     4261 tctcatcata attatcaatt tcataaggat gcacccctgc tgcaaaaaaa atatttttat
     4321 atttatgagc aattgtagct gcataaggca agtcttttat atcagcacca ggtatgatga
     4381 ttttctctat accattttta aaagcacgat ttaaagtttc atctaaatca tctttaaatg
     4441 cttcactgtc tagatggcaa tgcgtatcaa caatccttaa accatcttga aaatcaagat
     4501 ttaagaacat acttcaactc tatccttgcc gttatctttt gcttgagaca atattttact
     4561 tgctttatca accaaagaat caatcttatc tccacttttt ccaaaaacca cgcctataga
     4621 agctgtaaaa aagacttcat ctaaattaac taaaacacca gcttttttta tatttactcg
     4681 tatacgagaa aagattttaa tcgctctttc ttgagatata tttttaagca aaatacaaat
     4741 tttttctgca ctatatctac ctacaagatc tcttccttta gtttcattaa ctatttcatt
     4801 ggcgcagatt ttaattactt catcaccaac ttcacggccg tattcatcgt taatcatttg
     4861 aagattatct atatctaaga aagcaaaagc aaattcctcg tcttttgttg ctatttcgtt
     4921 aaaataatca tctattccat cgattaaagc attataattt ttaaccccag atacaagatc
     4981 taaaacatta taagtgctta aaaatttttt atcatccatg taagataaac aacgatctaa
     5041 gcgacaatta aaactttctt tgcttaaagg cttaaacaaa tactcattaa ctccattttt
     5101 aaaagaattc gcttcaaatg aatcattatg atcccccaaa agaatcacac ctaattcatc
     5161 atcactaaaa cgttctctta cttgagtcaa aagctcaaaa ccgctaatta ctggcatatt
     5221 gacatctgct ataataagct taacatcatt attatcattt aaataactca ttgcttcttc
     5281 gccatgagcc gcagctaaaa cattaaattg tctttgagta agtatttttt taatttcatt
     5341 acgttcaggt agcttgctca tagctacaat cactttagtt tttgcatatt gattaagttt
     5401 tacaatagaa ctaataatct catcaatgca agtttcactt tctttaaaaa tataatctaa
     5461 tatatcttta tccataaatt tttctttagt agccttatca ccactagccg taagaacaat
     5521 agcaggaatt ttcttttcta taacataatc cacaacttca ccatttgggg catctggcaa
     5581 gcataaatcc acaaaagcta aaaaataatc attattcatt aactccttag cttcagcaaa
     5641 accaaaagca atatctacct cataatctaa agtcatttga atttttttag ccaaaagttt
     5701 gccgagcatt ttattgtcat caataattaa aattttctta ttcatagtgt gtaaaatacc
     5761 tttatatcta aaatttttta ttatatttgt ttcaaaagaa aggaaatttt tatagttata
     5821 tattttaaca tagcaaaata aaaaatccgc ttaattctta aataaggtct tagcaaattc
     5881 gatcgcttca tcactaacaa gctctccact taccatccta gcaagttctt taattctttc
     5941 ttcttgatca agctttttta ccttactttc ttcaccattt ttttcaacta aaaaatgatt
     6001 atgtgcctta gaggaaagtt gaggcaaatg agaaatagca aaaatttgat aaaacttaga
     6061 aagttcctct aaaaccttag ctatactcat agcctctttt ccgcttaaat ttgcatcaat
     6121 ttcatctaaa aataatatcc ctttgcctgt atttaaaata ttacattctg tggctataaa
     6181 agcaagtctt aagcgattta attcacccga acttaaattt tttaaatgag ctaaattaat
     6241 atctagcatt atctcatctt tgcctaaaat tgaaattttt tcattttctt taagcgtcaa
     6301 acttgcatct ttcatataaa gatctttaag ataattattt aaacattttt ctaatttttt
     6361 aaggtttttc tttcttgttt gagttaaaat ttgtgctttt tcttctaatt tttgttttaa
     6421 ttcttgaaat tttttttcaa gttctttttt ttcaaaactt aaattttcat aatgctctag
     6481 ctcatatttt ttttgtttta aaacttctaa agcattttct atgctttcat aacgcttgat
     6541 aagataggat aaattttcaa tgcgatctaa aagcgcctcc acatcaaaat ccaaatcttc
     6601 cattttttga ttttcgcaaa tcacacgcaa ttcatttaaa cattcactaa aaaaactcgc
     6661 atcaacttcg cttaaattta aagcttcaat aacaactttt tcaagctcaa aaatacgctc
     6721 tgccttactc caagcttctt ctaatttatc ttttttagaa agcttttttt taagtattaa
     6781 aagctcttca tactcaccta ttttaggatt aatgcttgaa attttttcaa tttgtgctct
     6841 agctagttct tttaattctt ctactttttt ttcttcttct aaaattgcat taagctcatt
     6901 agaaatttga ctataagcat taaaatcttt tttaaaatct tctaaaaagg aaacaaaatt
     6961 tgtattttct tgcatctcca aggcatctaa gagatttaaa aatttttcat ttccaaattc
     7021 gttattttcc tttgcgctta aatacttaat aaaagtttta cttaaatttt gcaaactttt
     7081 tttcgctatg ctttgattgt taataaaata ttttgtgttt ttttctttta agagcttaaa
     7141 aacattctcc tcttcacttt ctataccaaa actttctaaa tccaacttat catctacttc
     7201 tatttcgaca attttagcct cactttcact caaagaaaat gcggataaaa ttcctttaaa
     7261 caagaccgat tttccagctc cacttaggcc tgtaaaaacg gtaagccctt tagaaatttc
     7321 aagctcagcc tttttaaaac caagattttc tttcataaaa attctattta tcatcaattt
     7381 ccccagtgta atttttcttt taaaatttga aaataatccc tattttttgg gtgaattaaa
     7441 gccacatttt tatcacttaa acccactttt atacttttaa aatcattcat tttataattt
     7501 tcttgcccat caatgcaaag catgcaatcc tttgccataa tctctatttc aaaacctttt
     7561 ggcaagacaa tagggcgttg tgttaaagaa tgagaacaaa caggagttaa gataaaagct
     7621 tgagctaaag tataaactat gggtccattt gcacttaaat tataagctgt tgaacccgca
     7681 ggagttgcaa caataagccc atctccaaaa tattcattaa atttcttttc ttttctaaaa
     7741 acttctatat gagccataga agcttgattg tttttactga taaccacatc gttaaaagct
     7801 aatttttcta aaatttttcc ttgcttatct tctaaaaaaa cacttaacaa ataaggcttt
     7861 tctattctaa attctccttg aaaaaaagct tgaaaaaaat tttcagcttc atcaacttta
     7921 aaatctgtta aaaaacctaa atgtccagca tgaattccta aaactgcttt atcatattca
     7981 caagctttac ggcataaaga aatcaaagtt ccatctccac ctaaagaaat aacaaaatcg
     8041 gatattttaa acaaatcatc caatccatac ttcggcaaat ctaaaatttc agaactttct
     8101 ttaagcaata caagttcaac tttatatata gataaaatcg attgaagttt taaaatttcc
     8161 ttatctaaac tcacattggg tcgcgtaaca agtccaattt ttttaatatt tttataatct
     8221 attttatttt gcataaaaaa ttatatcaaa tcttagcaaa gcaaaagaat aaaaatacta
     8281 taattttgct cattatctta aaaaatcttt ttcaaggaat aaatttgcga agtcattata
     8341 atacagactt gggaatttcc catgttggtc aaagcgttaa actttgcggt tgggtaaata
     8401 gctaccgcga tcatggtgga gttattttta tagatttaag agatagaagc ggtattatcc
     8461 aacttgtttg cgatccaaat gatagtaaag aagctcatga aatcgcttcc aatgcaagaa
     8521 atgaatttgt acttattaca gaaggtacta ttcgtccgcg tggcgaagga cttgtaaatc
     8581 ctaagttaaa aacaggagaa atcgaagtag ttgtttctaa acttaccata gaaaatgaaa
     8641 gtgctgtacc tccttttgct atcgctgatg aaagcgtaaa tgaagaatta cgcttaaaat
     8701 atcgcttttt agatttaaga aatcctaaac tttatgaaaa ttttgccttg cgttctaaag
     8761 cttgtatagc agctagaaat tctttggcaa atatgggatt tttagaagtt gaaaccccta
     8821 ttcttaccaa agctactccc gaaggcgcaa gagattatct cgtgccttct cgtgtgcatc
     8881 agggtgaatt ttatgctctt ccacaaagcc ctcagctttt caaacaactt ttaatgtgta
     8941 gcggttttga tcgttatttt caaattgcaa aatgttttag agatgaagat ttaagagctg
     9001 atcgccaacc tgaattcaca caaattgatg ttgaaatgag cttttgcgaa caaaaagatg
     9061 tgatcaagat agctgaaact tttttaaaag atattttcaa agcttgcggc aaagaaattc
     9121 aaaccccttt tagacaaatg caatacaaag acgctatgga aaattatggc tctgataagc
     9181 cggatttaag atttgatctt aaatttattg atgtgattga tattttcact aagtcaaata
     9241 atgaaatttt tgcaaatatt gccaaagata caaagaaaaa tcgcatcaaa gccatacgcg
     9301 ttccaaaagg cgatactatt ttttcaaaaa gacaaatgca aagatttgaa gaatttgtgc
     9361 gtaaatttgg cgcccaaggc ttagctttca tacaagttaa aaaagatggg cttaaaggtc
     9421 cactttgtaa attctttagc gaagaagatt taaatgagct aagcaaacgc tgtgagcttg
     9481 aagtaggaga tgtggtattt ttcggtgcag gagctaaaaa aaccgtgctt gattatatgg
     9541 gaagatttag aattttctta gccaacgagt taaaacttat agatccaaat gccttggaat
     9601 tcttatgggt tgttgatttt cctatgtttg agcaaaatga tgacggaagt tattctgcga
     9661 tgcaccatcc ttttaccatg ccaaaaaata ttgatgagac tgatttagaa gaaatttcat
     9721 ctattgctta tgatgtagtg ttaaatggcg ttgagctagg tggaggtagt ataagaatcc
     9781 ataaaaatga tattcaacaa aaagtattta aacttttaaa tatcgatgaa gaacaacaaa
     9841 aagaaaaatt tggcttcttg cttgatgctt taagttttgg tgctccacca catggaggta
     9901 tcgctatagg acttgataga ctcatcatgc tagttacagg agcaaacaac ataagagagg
     9961 ttatagcctt tccaaaaacc caaagagcgc aatgcttaat gacagatgca ccatcgcctg
    10021 ctagcaatga agcaatgaga gaattaggaa tcaaattaag ggagaatata aaatgaaaga
    10081 attgttttta atcataggtg caccaggtag tggaaaaact accgatgcta gtttaatcgc
    10141 acaagcagat gcgacaaata ttacacacta ttcaacagga gatcttttaa gagctgaagt
    10201 agcaagtggg agcgagcttg gaaaaactat agatagtttt atctccaaag gcaatcttgt
    10261 tcctttagat gttgttataa atactatagt ttgtgctcta aaagctgctc caactaaaac
    10321 tatcatcatc gatggctatc caagaagcgt agagcaaatg atggaatttg ataaggtttt
    10381 aagtgagcaa aatgaaattt gtcttaaagg cgtcatagaa gtaagagtaa gcgaagaagt
    10441 tgccaaagaa agagttttag gcagaaatcg cggcgcagat gataatgaag aagtgtttta
    10501 caatagaatg aaagtttata cagaaccttt aaatgaaatt ttagattttt atcaaaagaa
    10561 aaaacttcat tttattatcg atggagagcg cgctatcgaa cctatcgttg cagacatgaa
    10621 agaactaatt aaaaaaattc aaagtatata aggagaaaaa atgaatttaa acaaaatcaa
    10681 aatcggagat attccaaata aaatcaatgc cgtaattgaa attccatatg gctcaaatat
    10741 aaaatacgaa atcgataaag atagcggtgc tatcatggta gatcgcgtta tggctagcgc
    10801 gatgttttac ccagcaaact atggttttat tgctaatact ttggctgatg atggtgatcc
    10861 tgtagatatt ttagtgctta atgaatatcc tatccaagct ggagctgtga ttccttgtcg
    10921 cttaatcggt gttttaatca tggaagatga aagtggaatg gacgaaaaac ttcttgcagt
    10981 tccaaattca aaaatagatg cgagatatga taatataaaa acttatacag acttaccaca
    11041 ggcaactttg aataaaatca aaaacttctt tgaaacttat aaaattttag aaccaaataa
    11101 atgggttaaa gtgcaagact tcaaagatga aaaagccgca attgaaattt tagaaaaagc
    11161 aatcaaaaac tataaataat cttagccctt tcaaagggct aagattaagg aaaactcgca
    11221 atgaaaaata tcattttagg tggtggttgt ttttggtgta ttgaagccgt atttgaacgt
    11281 ctaaaaggtg taatcaatac tgaagttgga tatagcggag gaaaaccaaa tcctagctat
    11341 gaaagcgtgt gtaatggtga tggtaacata gaagttgtca aaataaatta cgatgaaaaa
    11401 caaatctctc ttcttgaaat cctaatactc ttttttaaaa ttcatgatcc aacaagtata
    11461 gataaacaag gtgaagatat tggcatacaa tatcgctcaa taatatttta cgaaaatgaa
    11521 gaagataaaa ttttagctca aaatttcatt gaagaacagc aaaaaatatt tagtaaaaaa
    11581 atagttacta aaatttcaag attgcaaact tactataaag ctgaaaacta tcatcaacat
    11641 tattttataa ataatcccga tcaaggatat tgtcaagctg taatagctcc aaaactgcaa
    11701 aaaatacaat cagactaatt tcatcttttt aaggttaaaa aaaattcaac tttattcaca
    11761 gccttttcac gctgtgattt tcttttcaaa gtacttaaaa atagaacttt aagctttaaa
    11821 ataaagaaaa aattatttat tgttttttaa gtttttttat gaatttgtat ttaaatgtga
    11881 ataattttat taattaacat aatttcctaa gtttagctat gaaaaatcca tcatagtcta
    11941 agcttggtaa aatccgtctg cattttgaaa tttcagcaaa ttcttcactt tgccctgctt
    12001 tagcctcaac attttccaaa tcaatatcta aaagctctaa tttaaactca ctttttaaag
    12061 cattctctat cacttcttca ttttcttctt tggtaaaggt acaagtacta tatacaagct
    12121 ctccacctat ttttaatgcc tttaaagcag aatgtagaag ttttttttga gtttttgcaa
    12181 tatttttgat ttctttataa cttttttcca aatcaaaacc tattttagca aaagtcgaac
    12241 aaggtgcatc aagtaagatt ttatcaaatt ttaaaggaca taaattgcct atatttttac
    12301 catctttcat aaaaacttta gcattcacgc cgtaattttt aagatttttt tgcaaaataa
    12361 aaaatctatc cctactcatc tcattgcaag ctaaataacc tgtattttgc ataaaatttg
    12421 caagattgat acttttacca cccggagctg cacacatatc aagaaccctt tgccctgctt
    12481 tgacttctaa atttaaagca cacaaataag aagaataatt ttgtatataa aagtgcgcct
    12541 cattaaaaac tttcatagaa cttaagatag ccttatcttt ggtatcaaac aaataacaat
    12601 aagcattgat ctttttaaat tttaattttt gttttaaaaa ttctttttct aattcttcaa
    12661 tgctaatttt taaagtattt gtaaatacac aaacattttt ttcttgagta aaagaagata
    12721 aaatattttg catttcatct ttggtataaa gtttttctat tctagagagc aaaataatcc
    12781 tttatcatga taaaagcgga taaagagtct aatttaccat cttttttgcg tgtattggct
    12841 acgccgtatc ctaaagcttc tttgcttgtt ccgctttcat ctacaaagca aatttcttta
    12901 tcaaattcaa gcaaagaaac aaaatgctta atgcgtcttg tcatttcttc ttcacttgat
    12961 ccacccttag gaatgcctac aataagtaaa gaaatttcat gtattttaag taaatttttg
    13021 atttcattag cggcttgatt gcgatttttt cttaaaactg catctaaagg caaagcgatc
    13081 tttttatcta tgcaaagcgc tacacctatg cgttttaaac ctacatctaa agccaaagct
    13141 ctcatgctaa aacccttata aaaagccctt ctatggaaat ttttccctca agttcatatt
    13201 cataaacttt ttgtccataa atttttaaag cctcatcaac actcacacct tttttacaaa
    13261 actctaaaaa ttcatcttga tttatatcta tacttgcaaa ctcacttaca aattctttaa
    13321 aatcacaaat taactttgct ttattttcct ttaaaagaaa attagttcct gtgctttctt
    13381 ctagtctttg tggtaaaaca tataaaggtt tattgagttc taaagcaagt tttgcactct
    13441 gcatagaacc actttttata tctgcttgtg caaccacaac ggccttactt aaagcaataa
    13501 ccaaacgatt tcttagtaaa aaatcataat tttttggcaa ataatcatct tcgtattcac
    13561 ttaaagctaa agcatttcca taaatttgtt taatgatttt ttcattagtt cttggataaa
    13621 tttgatctaa accattggca aaaataccta tagtatttgg catagctgcc atacttgcgg
    13681 tgatatccac acccaaagca ccgccactta ccacgcaaag atgagcattt ttaagcatac
    13741 tcgctaagga aaaaacacaa tttttcgtat aaacactcat acgccttgaa cctataatag
    13801 cgattttatc ttgttttaat aaagataaat ttcctttata gtgtaatttt ttaggaggct
    13861 tttttaaatc tttaaaaagt tctaaaaatt catcaggcaa aatttcactt gccataaatt
    13921 tcactcaaat acacaagatc aacgcttttt aacaaatctt tactttgctc taaagcttta
    13981 aaagtatttt ttctaggatg tcctatggct ataacaaaac cttttttttg tgtaagtttt
    14041 accgcacttt caagttgttt tttaacataa ttaacatcat cttcattatc caaaaacaca
    14101 tctctttgta tataaggaac atttaactct ttggctattt tatttgcttt agaatttcct
    14161 atagttttag aatctacaaa aaatatattt tgatttttta aaacctcata aagctttctc
    14221 atagcttctt cattgcttgt aaataaactt cccgtgtgat tattgatgta tcttaaatcc
    14281 ttaaaatctt ttttaatttg cttgattttt ttaaaaattc tttctttgct atcatttgaa
    14341 tttaaagtat caagctcagg tttattgtaa ttaatcgctg ctaaaggtaa atgcaccata
    14401 taaaaatcaa attttaaagc aagttttggc gtttcgctat ggtttttatc tggcggaaaa
    14461 aaagaaggat ttaactttaa atttaaagct tttaaacctc taacctgact tgcatttgcc
    14521 atatcatcga taataatagc aagttttggt tttttagaaa ttttatttaa atgaatatct
    14581 tcattaaaag ttaaattttg atcttgggtt aaatttgtat cttttagaat aaaattttgt
    14641 tctaaactct gattttgctc taaacttaaa ttctgctcca cactgcttaa attttgctca
    14701 tttaaacttg tatttaaatc atcaatttct tgaatttttt gctctaaaat acttacagat
    14761 ttattattat caaactcatt ctcttgaaaa ataccaattt cataatgatc tttatttaat
    14821 gaaattaaat cttcttgctt atcaataaaa taatccggct taacagaaga aacatcttgg
    14881 gaattttgat attttactaa aattcccaaa gctaaagcta tgcaaagtaa aaaaagtata
    14941 gctatgatta aataacgctg aatttgaact aattttttct ttgacaatgt ttagttctta
    15001 tctttatcta ctaatttttt agcactgatc caaggcatca tagcacgcaa attgcgtcct
    15061 gttttttcta tcaaagaatc attcatattt ttgcgttctg catgcattct agcaaaacct
    15121 gcacggcgtt ctaagataaa atcttttgca aaaacaccat tttgtatatc ttttaaaaca
    15181 cctttcatcg cttttttagt ctcttcagtg ataatctttg gccctgtgat gtaatcgccg
    15241 tattctgcag tatttgaaat agaataacgc atatctgcaa taccaccttg ataaatcaaa
    15301 tccacaatga gtttcatttc atgcaaacac tcaaaataag ccatttcagg ttcataacct
    15361 gcttcaacca aagtttcaaa acctgcttga atcaaagcac taagtccacc acaaagcaca
    15421 gcttgctcac caaaaagatc tgtttctgtt tcggctttaa aggttgtttc tataatacct
    15481 gtacgtccac ccccgatcgc acttgcataa cttaaggcta aatttttagc atttttgctt
    15541 tcatcttgat ggatagctat taaacaagga gttccaccac ctagagtaaa ttcatttctt
    15601 actgtatgac ctggtgcttt aggtgctatc atgataacat ctacaccttt tggaacaaca
    15661 atttgaccat aatggatatt aaaaccgtgt gcaaaagcta tagccttgcc ttcacttaaa
    15721 tttggtttta tttcgacatt aaaaatatct gcttgaattt catcaggagc taaaatcata
    15781 atcacatccg ctatcttaga agcctcactc acactcacca cttcaaaacc agcatttttt
    15841 gctttaacag cacttacact accttcacga agtccgatag ttacatttac gccattatct
    15901 cttaaattca tcgcatgagc gtgcccttga gagccaaagc ctataattgc tacttttttt
    15961 gatttgatta aatttaaatc acaatcttta tcataatata ctgtaatagc catattcact
    16021 ccttaaaaat tcaaaaatta aaggtattat tatagcaatt aaagtataaa tttcatattt
    16081 tttttataaa ctttatgtaa gaattttaca aaaaatcata aagtatcaaa agtgaaagaa
    16141 tttttaaaca gtcttagtta tggcattagc tctcacgaag taaacaatga atttaaacaa
    16201 attttaagag aacttttaac caatcatatc atcaaagaac acaaaaacaa atactatctt
    16261 aacaatggtt ttgcctttgg agtacttgat atttcgagta aaggcacagg ttttttacaa
    16321 tgctttgatg aaagtttcaa aaaagatctt ttgatagaaa acaaaaacct aaaaggcgca
    16381 aactataaag atatagtcgc agtaaaactt ctacctttaa agaaaaaacg ccccagtgca
    16441 aaggtgattt tggttctaaa aagagccaat gaaacctctt tagtgatcac caaaaggtat
    16501 ggcgaagccg tgcttggaat gaatatcaaa acaggattaa gcaccacctt aaaagcttct
    16561 caaaaatcct taaaagcact acctttaggg acaattttaa aaatagaaaa tgaaaataac
    16621 aatatcatag aagttttagg gcatatccat gatgaaagcg tagatgaaaa aatctcccta
    16681 gctcttttta ataaaaataa cgaatttagc gacgcttgta tcaaagaagc tctagcaaac
    16741 ggtgatagtg ttgatgcgag tatgtataaa aatcgcatgg atttaagagc cttgcctttt
    16801 tgcaccatag atcctataca tgcaaaagat tttgatgatg cgatttattt tgacacccaa
    16861 aaacgagaaa tttatgtagc tattgctgat gttagcgaat atgtttatgc ttatagcgct
    16921 atagataaag aagcaagaaa tcgtggattt tctatttatt ttccacatat tgctatacct
    16981 atgctaccgc atcctttaag tgaaaatatc tgttctttaa aacctcattt agatcgctta
    17041 gcgtattgtt ttaaaatcac actcgatcat gaaaataaag tcataaaaga agaacttttt
    17101 gaaggtatta tcaactcaaa acgccgtttt aattatgatg aagttgatga aattttaata
    17161 caaaaacctg atttaaaaga gctttcatgg ctttatgagc tttttgaaat cacaaaaaat
    17221 ttacgcaaaa tgcgtcttaa aaatgccttt gaatttcgca ccgaagaatt aagaatgaat
    17281 ctagataaaa acttaagtct aaaaagcaca gtttttgaaa aagacacgcc ttcgcataat
    17341 ttgatcgaag attgtatgct tttagccaat aaagccgcag caaaactcat agatataggt
    17401 gtttttagaa atcacttaag tgctgatgca agaaaaatcg ataagctttt aaatgaatta
    17461 cgcgaactag gcatcgatgt aaattttaaa cccaatcttc ctgaactcat acgcgacata
    17521 caagctttat ccgatgagtt aaatttaaga gcagaagtag ataaactcat catcaaagca
    17581 caaaaaaaag cggaatattc tagcgtaaat gcggggcatt ttggcttagg ttttgataaa
    17641 tactcacatt ttacaagccc tataagaagg tattctgatc ttattttgca cagactttta
    17701 aaagccaagc aaaaaaacga tgaaaaactt tttaattatc tacttttaaa catagaaagc
    17761 acttgcgaga atcttagcac acttgaaaga gaggcggata aggttgcttt tgattttatg
    17821 gatagaaaat ttgctagatg ggcagctaaa aatataggca aaaaatttaa agctttagtt
    17881 gtgcaaaatg atggactttg catagctaaa ctagatgatg aaatcaaagg agcagatata
    17941 atcctttatg atacgcgtgt aaatttgcta gaaagtgttg aggtgcaaat catagaagcg
    18001 gatatagtta tggcaaaaat ttatgctaaa atcacccaaa gacttataaa ggaagaaaat
    18061 gtatagaaaa gagcttcaaa tcttactttc taaagattca atacctaatt ttttctttct
    18121 ttatggagca gataattttc aaagcgaact ttatgctgaa tttataaaag aaaaatataa
    18181 gcccgatgaa actttaaaac ttttttttga agaatacaac ttcactcgtg cgagtgattt
    18241 tttaagcgca ggatcgcttt ttagcgaaaa aaaattacta gaaatcaaaa cttctaaaaa
    18301 aattccaaca aaagatctta aaattttagt cgaactttgc aaaaacaata cgaacaattt
    18361 ctttctttta gagctttatg atgaaaattc taaacaaagc gatatagaaa aaattttctc
    18421 tcctcatttt gtaagatttt tcaaagctaa cggagctaaa gaaggcgtgg aacttttaag
    18481 cataaaagca aaacaactag gggttgaaat cactcaaaat gctttattta ctctttttac
    18541 aagttttgat gaaaacttat atcttgctgc gagtgagctt aataaattta gtggtttaag
    18601 agtagatgaa aaaaccatag aacaatactg ctatagtttg aatacaggaa gttttgaaag
    18661 cttttttgag aaaattttaa aaaaacaaga ctttaaaagc gaacttgaaa aaattttaga
    18721 taattttaat gaaattgctt taatcaactc tttgtataat tctttttatc gtttgtttaa
    18781 aatcgcactt tatgctaaag tcaatggtaa aattgacttt aaagatcttt taggctatac
    18841 tccacctcct caagtgggac aaaatttaag ctctcaagcc tttaatttaa aaatcgaaca
    18901 atataaagaa attttcactc ttttgcttaa atgcgaatac gagcttaaaa ccaattctaa
    18961 gctcgtaaaa aaagaatttt tgatttcaaa tttgcttaaa cttgcaagaa ttttgaaaag
    19021 ctagatttat atacttggta aaaataaata ttacttatct ttcatcttga aaacttacaa
    19081 attcatcaaa actactaagg aatttatcat ttatattaaa gttcttgttt ataaaaaacg
    19141 gtaaagattg aagagttaat tttttatcat ccttggtggt tattattttt ccttttaaag
    19201 tctctaagaa ttcttccttc caagcatctt ttgctattgc taaatgctct ccttttgttt
    19261 ctataaaaca ttgtatgctt aaaaaattat catcatcttt atttttctta ccaaagaaaa
    19321 taaaatcagg ttcaaatccc atagcataag ttacttcatc ttttctatta tcgtaaattt
    19381 taaattcttc aaagccttca tttcttataa caaaccattt agaaaacact ttattgattt
    19441 catctttttt cacttctata aaatttaaaa attctttttc taaattacta tcaaaacaaa
    19501 aagttttgtg ataaagccac tcaaaattca tttccttaaa attctcttta tttttaaat
//
LOCUS       DARGED010000018        19503 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.018, whole genome shotgun sequence.
ACCESSION   DARGED010000018 DARGED010000000
VERSION     DARGED010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.018"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..175)
                     /locus_tag="SFZ84_000522"
     CDS             complement(<1..175)
                     /locus_tag="SFZ84_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202672.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMV"
     gene            complement(172..2601)
                     /locus_tag="SFZ84_000523"
     CDS             complement(172..2601)
                     /locus_tag="SFZ84_000523"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG8202673.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDVLARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYTEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKAIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQICGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKVLRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            complement(2611..3582)
                     /gene="secF"
                     /locus_tag="SFZ84_000524"
     CDS             complement(2611..3582)
                     /gene="secF"
                     /locus_tag="SFZ84_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG8202674.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            complement(3582..5162)
                     /gene="secD"
                     /locus_tag="SFZ84_000525"
     CDS             complement(3582..5162)
                     /gene="secD"
                     /locus_tag="SFZ84_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG8202675.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKKRITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNARFWFGYRRR"
     gene            complement(5155..5427)
                     /gene="yajC"
                     /locus_tag="SFZ84_000526"
     CDS             complement(5155..5427)
                     /gene="yajC"
                     /locus_tag="SFZ84_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG8202676.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            5400..6725
                     /locus_tag="SFZ84_000527"
     CDS             5400..6725
                     /locus_tag="SFZ84_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG8202677.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQNQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            complement(6962..8158)
                     /locus_tag="SFZ84_000528"
     CDS             complement(6962..8158)
                     /locus_tag="SFZ84_000528"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG8202678.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            8298..9521
                     /gene="sstT"
                     /locus_tag="SFZ84_000529"
     CDS             8298..9521
                     /gene="sstT"
                     /locus_tag="SFZ84_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG8202679.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            9531..10418
                     /locus_tag="SFZ84_000530"
     CDS             9531..10418
                     /locus_tag="SFZ84_000530"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG8202680.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDAAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGNVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSNERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            10422..12143
                     /locus_tag="SFZ84_000531"
     CDS             10422..12143
                     /locus_tag="SFZ84_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG8202681.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNTN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERRNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQDWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESRKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            12137..12574
                     /locus_tag="SFZ84_000532"
     CDS             12137..12574
                     /locus_tag="SFZ84_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202682.1"
                     /translation="MLEKILKNENFIHTMQKHCHEIISHLIEENIEFSIVANTNFIDF
                     NPELPKELDVKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            12571..14646
                     /locus_tag="SFZ84_000533"
     CDS             12571..14646
                     /locus_tag="SFZ84_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG8202683.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLKEKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLTNEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            14643..15461
                     /gene="truB"
                     /locus_tag="SFZ84_000534"
     CDS             14643..15461
                     /gene="truB"
                     /locus_tag="SFZ84_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG8202684.1"
                     /translation="MNKIFAAFKPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIKNIKEFDLANLQQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            15455..15682
                     /gene="csrA"
                     /locus_tag="SFZ84_000535"
     CDS             15455..15682
                     /gene="csrA"
                     /locus_tag="SFZ84_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG8202685.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            15679..16446
                     /locus_tag="SFZ84_000536"
     CDS             15679..16446
                     /locus_tag="SFZ84_000536"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG8202686.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     LDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLMNETLNLKLNLQELINLSTQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            16443..16895
                     /gene="smpB"
                     /locus_tag="SFZ84_000537"
     CDS             16443..16895
                     /gene="smpB"
                     /locus_tag="SFZ84_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG8202687.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            16906..17508
                     /locus_tag="SFZ84_000538"
     CDS             16906..17508
                     /locus_tag="SFZ84_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8202688.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNDSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            17508..17798
                     /locus_tag="SFZ84_000539"
     CDS             17508..17798
                     /locus_tag="SFZ84_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG8202689.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            17795..>19503
                     /locus_tag="SFZ84_000540"
     CDS             17795..>19503
                     /locus_tag="SFZ84_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8202690.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKIFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHTISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTI"
BASE COUNT         7086 a         3140 c         2759 g         6518 t
ORIGIN      
        1 ttaccatttc ttttaaagta tcggcaacat agatactatt ttttgggtct tgttgactta
       61 attcaacatt aacataaacc ttctcatcga aaatattatt agcgattttt gatgtaggaa
      121 catatccaca agcacctaaa aataaaccta tacaaaaaat taaaatcttt ttcatttaat
      181 cactagatta actagctttc cttccacata aatttcttta actatactct taccttcaag
      241 ccatttagca gtattttctt ttgcaaaagc taaaatttct tctttactcg cactacttga
      301 aatttcaaat tcagcccttt ttttaccatt aatacttaca gctaaattta aagtatcttt
      361 tacaaaaacc tcttccttaa gttctaattt tttgaaattt ttacatttaa aaagctcctc
      421 gctaagctca aaacaaacat gaggaataat aggctctaaa atatttaaaa taatataaaa
      481 agcctcttgc tccaaagctt catttttaca aagcgctaaa gcatttaaag cttccatgca
      541 agctgcaatt aaagtattaa aagcaaaact ttgatgataa acttcaaaag attttttcaa
      601 agcttcatat acctttaatc ttgcatattt ttcttcttta tttaaatttt cttgttttaa
      661 ttctacaagc tcaccttttt taacattttg cgccctatca tagagtttac aaataaatct
      721 ataagcccct tcaaccgcat catcattcca ttcaagctct ttagccggag gcgcagcaaa
      781 aagtataaaa agtcttgcgg tatcagcacc gtatttttct ataatctcat caggatctac
      841 aacattgcct tttgattttg acattttagc tccatctttt aacaccatac cctgagttaa
      901 aagtctatca aaaggttcat tttgtgttaa ataacccaag tctcttaaaa ctttttggaa
      961 aaatctcgca taaagcaaat gcaagattgc atgttcaata ccacctatat attgatccac
     1021 actcatccaa tactttacac ttttttcatc taaagctttt tcctgccaag ttttctcatc
     1081 acttgcgaaa cgtgcaaaat accaagaact ttcaaaaaaa gtatctaaag tatcactttc
     1141 tttttgagcc tctttgccac atttgggaca aatacaattt ttccaagttg gatgtttatc
     1201 aagtggatta ccctcacctg taatttgcac atcttcaggt agggtaatag gtaaattttc
     1261 tagtttttga ggcactatac cacaaatttg acatttaatc ataggaatag gcgcacccca
     1321 atatctttgg cgtgaaacac cccaatcacg aattttaaaa tttacaaccc tttttcctat
     1381 atttttagct tcaaactgag aaataatttt taatcttgcc tcattacaat caagattatc
     1441 aaattcttga ctatggatta actttcctga tttttgcgta taaggtaaat tttcttgagt
     1501 ttgaataact tgtttgatag caagattata ttttgttgca aattcaaaat ctctttcatc
     1561 atgagctgga acagccataa ccgctccact accataatca gccaagacaa aattagccac
     1621 ccataaagga attttttctc cgcttaaagg atgaatagca taaattccta aaaaatagcc
     1681 ttctttttca gaactttgtc tttctcttgg actttgattt tgaatagctt tgattttatt
     1741 taatacatct tgatttaata aattttgtga aagcaaattt tgaacaatct tatgttctgg
     1801 agctaaagcg atatacgaaa ctccataaat tgtatctgct cttgtagtaa aaacttctaa
     1861 agaactttct ttggtttttt gcttgctttc ttcgtctaaa tttaaagaaa attccaaacc
     1921 ttcgctttta ccaatccaat tttcttgcat agttaaaact tgattaggcc atttatcttt
     1981 taattcttct aaatctttta aaagttcctc agtataagca gtgattttta cataataacc
     2041 tggcattttt ttctgcacta cttcatgacc acaacgccaa cattttccgt cttcaacttg
     2101 ctcattagcc aaaaccgttt gatcttgttc acaccaattt acatttgctt ctttagtgta
     2161 aatcaaacct ttttcaaaca tcttaataaa aaattcttgc tcaaattttg tataaagtgg
     2221 atctgaagta gcaagcattc tttttttaga aaaagaaaaa cctaaagaaa aaagttcttt
     2281 tttcatataa gctatatttt cataagtcca tgacttagga tgaattttat gtttaatagc
     2341 tgcattttca gcaggcatgc caaaactatc aaaacctata ggatgtaaaa cattaaaacc
     2401 tatcttgcga taatatcttg ctaaaacatc acctatagta taatttctta catgccccat
     2461 gtgaatgcgt ccgctaggat aaggaaacat cgataaaata tattttttag gcaaatttaa
     2521 atcatctttt ggctcaaaat attcattttc atcccaaatt ttttgccatt ttttttctat
     2581 taaacttgct tcataagcca taaattctcc ttacactgtt cctttttcat acattgcacg
     2641 attgcgttct ttatcttgtt ttctttttgc tttttcaatt tctttatttc taaactcaag
     2701 cacactaaat ttaaaccata ataatgtcgg acttgcaaca aagatagagc ttaaagttcc
     2761 cgctataata cctacaatta aagccaaaga aaatccttgt atcatttccc cgccaaagaa
     2821 ataaagtatc acaacggttg ctaaagtcaa ccctgaagtt aaaaccgttc ttgataaagt
     2881 tgctgaaaca ctttcattaa taataggtgc aagttcggtt tttttacttg ttttaatgcc
     2941 ttctctgatt ctatcaaaaa taataattgt atcattcaaa gagtacccaa gcacagttaa
     3001 aacagcagcc aaggtatcta gattgacatc aattttaaat aaagaaattg cccctaaagt
     3061 aatcacaaca tcatgaattt cactgattat agccgcaaga gcaaaacgcc actcaaaacg
     3121 caacgctata taaattaaaa ttgctatcaa agatacagct atagccataa gtcctttatt
     3181 tctaagttca tcacctactt ttggacctac cacatcagca cgacgcactt caaattttcc
     3241 cgtatccttt aaaagagtgc ttatatgctc gcctatatca ttgcttacat tatcattact
     3301 tcctaaaaag cgtatggtta cttcttcatt acttccaaat tcagttacag ataaattttg
     3361 aaaagttcct tgtttttcta aaatttctcg aatttgtgtt ataggagctg cattttcata
     3421 tttaagctga actaaagttc ctccgctaaa atcaatgcca tattgcaaac ccctatccca
     3481 aagcaaataa atagaaccaa aaaacaaaat aaaagaaaga gaaatagcag caaaacgcat
     3541 tctcataaaa tcataaattt tcttttcgct aaaaaactgc attatcttct cctatagcca
     3601 aaccaaaatc ttgcattatt acttttttct atgcgttgca taaaataatc aaacattcca
     3661 tgagttccca aaatagctgt aatcatagaa acaacgatac caattcccaa agtcacagca
     3721 aaacctttaa ctgctcctgt tccataagca taaagtgcta ccgaagtaac caaagaagtg
     3781 atatttgaat ctataatcgc actcatagca tttttataac cttgttctat actaactctt
     3841 atatttactc catctcgcaa gagttctcgt atacgctcat tgataatcac atttgcatct
     3901 actgccatac ccacagttaa aacaagtcct gccatccctg gtaaagttaa agttgctcca
     3961 aacatagcca taacggcaac tactaccaaa acattaacta gcattgcaat atttgcaaaa
     4021 attcctgcca caccgtaata catcatcata aatactacaa taaaaaccga tgcaccgatt
     4081 aaggctatca tactcatttt aatactatca gcacctaaag atggtcctat gcttctttgt
     4141 tcaagtaatt ttacaggcgc aagcaaagct ccacttctta aagctaccgc cacatcgcgt
     4201 gcttcttctt gagtaaaagc tccactgatt tgcccactac ctccgcctat gcgttcattg
     4261 atagatggag cagaatatac tttattatca agtacaatag caagacgctt tccaacattt
     4321 gctcctgtat aatcagcaaa ttttttagaa ccctcggcat ttaaagtaaa attaatcaca
     4381 ggataattac tcttatcgct aagtcctact ctagcatcag taagcataga tccatctaaa
     4441 ataggtatac tttttaaggt atattttaaa tttggatttc tagaatcagg cactaaaatc
     4501 agtccataac tcgcagcctc agcatcgctc attgtagaag cttgacccat tttagaatca
     4561 tcaacttcca taagttgcaa atgtgctgct tttgtgatgc gtttttttgc tcttagttca
     4621 tcttctttgg ttttaatccc tgcaagttca accaaaatct tatcatcacc ttgtttagca
     4681 actgttggct ctgctaaacc aaattgatca agcctatttc ttatggtttc aactgcttgc
     4741 aaaagtgcaa aattttctat attttttact tcttctgagg taaaagaaat tttatagtgc
     4801 atattttcac tttgtatatt aattcctttt atttctttaa gcaaattttc aacttttgca
     4861 atatctgcat tatcaagcaa agtaaattct aaaatatcat catgggtatt taagccatca
     4921 tttaaaatat tttctttatt aaaagaataa ctcaatgaag atgcaattga ttttatttta
     4981 gattttacag cttcttcatt atctacacct aagagcatat aaagcccacc ttgcaaatca
     5041 agccctaaat taatcttcgc accacgttct gactgcaaaa aagaagggag tgaaaaagcc
     5101 actccaaaaa taaataccgc tataaaaata atcaagcgat aattgatttt agaattacgc
     5161 atcaattttc tttgctataa attctcttga aatttttgca gtaacattgt cttcattaag
     5221 cttaactttg ataaaatcct cctctggttt tacgacttca caaataagtc cgccattagt
     5281 gatgatttta tctccttttt gcaaagactc aagcatttgt ttatgtgctt ttgcttgttt
     5341 ttgttgcggt ctgatcacca agaaataaaa aattgcaaat aacactacaa gaggtaacaa
     5401 tgaagttaaa attgaatttt ctgccatatt tttcctttat tccaaaaaaa ttaaacacta
     5461 attctatcat ttttaaaata ataaaagtct tttttattgc aattttactt tcaaattcta
     5521 tttatctatc attttttgaa aatattttta cacaaactat tagcccattt ttagctattt
     5581 gggggttagt tttacttcta aaaagtaaaa attctaaaca atatttttgg ataggttttt
     5641 ttgtagggat tctttggttt tggtggattg gtttatcttc aatttatttt aatctaaact
     5701 atttagtacc aattatacca attatcattg gttttattta tggactactt tttagattat
     5761 gttatttatt aaaatttgat tttttaaggc tttgtggaat tttttgcata agttttatcc
     5821 atcctttagg atttgattgg cttaattggg gaatttttac agtttatggt ttttttgacc
     5881 caagttatcg tggtattatt tgcatatttt taatagcata tttcatctat gagggttata
     5941 tatcaagata ttataaaata gcgattgttc ttattttatt ctttagtgga tttcaatata
     6001 atgaaaaaca agctcaaact cttaatttaa actacaaact catcaatact aatatctctc
     6061 aaaatcaaaa atttttacaa gaaaatttaa aatcaaattc tgatatctta attcaagata
     6121 tacttcaagc tataaatgaa aaaaaagaac ttgtaatctt gcctgaaacc gcttttgctt
     6181 ttgatttaaa aaataccaaa tatgagctca tgcttaaaga attatcttat aaaatcacca
     6241 ttattacagg agcatttcat gttgaaaaag agcatactta caatagcact tatatcttta
     6301 aaaaaggcaa tgtctatatt ttaaataagc attttttagt tccctttggt gaagaaattc
     6361 cattttttaa agacttaaca aaaaaatatt ttctcaaaaa tattgaagaa ttttccaaag
     6421 gtcctataca aagcaaatat aaattagata atcaaattat cacaaatgca atttgttatg
     6481 aagctaccaa agaacaaaac tatcaaaatt cacaaattat tatagcccta agcaacaatg
     6541 cttggtttaa taatagtagc gaatacaaac tccagcaact cttaatgaaa ttttatgcaa
     6601 gtaaatatgg ggttagtgtt tatcatgcta caaatggcaa agagaatata gttatactcc
     6661 ctaaaaagct tttgagcaaa gattggaaaa atttatccaa agaaatattt aatgataaaa
     6721 aataatatta aaattttaat tttaaagtaa tttaagttat tttatattat aattctgtca
     6781 aacaatattt tgacttagag gggtttttac cccaaagcta aattaattta gcttccttcc
     6841 taacttttat atttatgagg gatattgaaa aatatccctc taagtcaaaa attaatataa
     6901 ctttattaat tctttataat tatacaagcc ttgtttaagc ttgtataata ttgttaattt
     6961 tttaaagtag ctttttaaac tgttctagag catcaagttt ttcccaagga tagtcctttt
     7021 gtcctacttg cccacgagct gctacatccg cataaagaaa agtttcttta cttggtttat
     7081 ccagatgaaa tttatcacgg atccaatttg gcgttaaaga gaaattttgc attacaaaat
     7141 cacttaaaac atcgtcattt acactggtat ttgtgcccat acaatccacg cttaccgaag
     7201 taggttttgc aacacctata gcataactaa gttgaactat acatttttta gcaagccctg
     7261 ctgcaactat gtttttagct aaccatctac ctgcataaag tccacttcta tcaactttag
     7321 tataatcttt gctcgattgc gcaccaccac ctattggaga ataacctcca aaactatcta
     7381 ctataagttt tcttcctgtt aaaccactat catgtaaaga agaatgatta acatatttac
     7441 cagttggatt gattaaaatt ctagtcttat taggatcaaa aagttctttt ggtaaattac
     7501 tatctaagat aagtttcatc actaaagatc ttaaatcttc tattttcata ctttcaacac
     7561 aaggtgcaga aactactata gtatgaatac tttgcggttt gcaattttca aaattcgcct
     7621 tagtgccata atctatagtc acttgagttt taatatccac tccaagttca tgtggatttg
     7681 cttttgcata agcataaact ctatcacata gcattcttgc ataactaata gctgctggca
     7741 tatattcctc agcttcacaa cttgcaaaac caaacataat gccttgatca cctgctcctg
     7801 tttcgccatc ttcttgatcg acaccttggt tgatatcagg gctttgttca tttaaaaaca
     7861 ccataacatc aacctcatca ggatgtaaac actgctcttt gctaaaatgg cctgctccgt
     7921 cataaccaat gttttttaaa acatctttaa ctaaattatc gtaatcagct ttactaagtt
     7981 tgtgatttga cttaacttcg cctcctatca caaccttatt tcctgcgaca aaaacctcac
     8041 tcgccaccct tgaatttttg tcatttttca agagtatatc cactatcgta tcagcgatta
     8101 tatcagcgca cttgtctgga tgacctgcac ttacgacttc tgaagtgaat agatacataa
     8161 aaagtccttt catttaaaat gaaccacaat tgtatccaaa taaacttatc aaagcttgat
     8221 aaattaaaaa ttctctaaaa ttaagcaaaa gttagttaaa atcaactttt gatataaaaa
     8281 atatttaaaa ggtttttatg ttttctaaaa tcattcaaag ctacgctaaa ggcaacctca
     8341 tagttcaaat ttgcataggt atagcactag gaatacttat aggcattagc tctaaagaaa
     8401 tatctgaaat tgcaaattta cttggaatac tttttacaag tgccttaaaa gctatcgctc
     8461 ctatgcttgt ttttatttta attttaacct caatttgcac taaagatttt tctcaaagtg
     8521 gtgctaagat caaaaatatt atcattttat atatagtagg cacctttttt gcttcagctt
     8581 gtgcagttct tgctaatttt ttcttccctg taaagcttgt tttagatgga gttcaaactg
     8641 ctacaaactc atctccaacc cacatgagtg atattttcaa agatctttta tttaaaattg
     8701 tcgataatcc cataaatgct ctttcaagcg gaaattattt aggaatttta acttgggcaa
     8761 tagctggagg tatagcatta aaacactgtt ctaacgaagc aaaacaagtt tttatagata
     8821 tcaatgaagg ggttttaaaa atcgttaaat ttgtagtaaa acttgcccct tttggaattt
     8881 ttggacttgt ggctaattct gtagcacaaa caggagcaca aggtttgcta agttatgtaa
     8941 aacttttaat tttacttgta gctactatgc tttttgttac ttttgttatc aatgccttaa
     9001 tagtcttttt ttatacaaga aaaaatcctt ttcctttaat ttttatctgc ttaaggcaca
     9061 gtgcattttt tgcctttttt acaagaagtt cagcggcaaa tattcctgta aatatggcac
     9121 tttgcgctaa acttggcata gataaagaat tttatggcat ttctatacct ttaggagcta
     9181 ctatcaacat ggcaggagca gcagttacta tagctatttt aagtcttact gcagccaata
     9241 ccgttggtat agaaatcagt cttttacaag cctttttatt aagcattatt gccacctttg
     9301 cagcttgtgg ggctagcgga gttgcaggcg gatctttact gcttatacct ttggcttgtt
     9361 ctttatttaa tatagactat gatattgcta tgaaggtagt tgccataggt tttattatag
     9421 gagttattca agatagtgtt gaaactgctt taaatagttc tacagatgtt ctttttacag
     9481 caatttgttc taaaaatgaa ttaaattaca atatcaaata aggtaaaaac atgcgtcatc
     9541 tcatcactac aaaggatttt aataaagtcg aaattatgga gctttttaaa gaagcaagtg
     9601 atttcttaga tgaaaaacct aggacttttc ttgaaggaaa aagcatcacg acaatttttt
     9661 ttgaaaactc tacacgcacc ctttcatctt ttgaaagcgc tgcaagaaga ttaggtgcta
     9721 gggttttacg ccttgatgtt tcaagatcaa gctctagcaa aggagaaact ctttatgatg
     9781 ctgctgctaa tttagatgcc atgagtccta atgctattgt tgtaagacac gcaaactcag
     9841 gagttccttt gatattagca aagcatatgc attgtccagt tgttaatgga ggagatggaa
     9901 aacacgccca tcctacccaa gctttactcg atttgtttac gatttataat cattttcaag
     9961 gtaatgttga aggtaagaaa atttgcatcg taggtgatat taaaaactct cgtgtagcag
    10021 cgtccaatat agagctttta agtagattta atcttgatat taccctagta gctccaccac
    10081 attttatgcc taatacccat cttaaaaaac attataagct tgatgagaat atcatagcaa
    10141 attcagatat tatcatgagt cttagaacac aaacagaaag acataataaa accgtttatg
    10201 cttcacttaa agactatgca aatgattttt gcattcaaaa aagcttagta aaggataaaa
    10261 agcttatttt actacatcca ggccctgtaa atcgcaatat tgacataagc gatgaaatga
    10321 tgagcaatga aaggacttta gttttaaaac aagttaaaaa tggagtggct attagaatgg
    10381 ctgttcttaa aaaactcata ctagaaaatg aaggataaaa aatgttagaa tgggatttaa
    10441 gtgctttatt tcacgataaa gaagcattgc aaaattttac acaagatcaa atccaacaaa
    10501 gtttaaattt caaaaaaaac tatgaaaata aactttatac attaaatact aatgagtttt
    10561 tgcaagcttt aaaagattat gaaaatttaa atcaagccct tggcaaaatc atgacttatg
    10621 cttatttgct ttttgctaaa aacactcaaa atggttcttt ttatgcacaa tacgaagaag
    10681 aatgcaaaaa aatagaagaa aatttactct ttttcgagct tgaattttgc gagttagctc
    10741 ctgagaaaag tcgagaattt acaacttttt gcaaagatta tgatttttat ctttctaatt
    10801 tattgcaaaa caaacgctat aatcttagca aaaacgaaga acgcattatg ctttatcttt
    10861 ccaatacagg tgcaaatgct tttagtagac tttttgatga aagtatgagt gctttaaaaa
    10921 tcccttttga aggtaaaaaa cttagcgaag aagaaattct aagcaaaatg tatgatgaag
    10981 atagaaagat acgcaaaaaa gctgctaaaa aattcagtaa agtcttacaa aaaaatagca
    11041 gacttttaag ttttattatc aatatgataa aaacagaaag aagaaatata agcttattaa
    11101 gaggttatga aaatgctgaa atttcaagac atatcagcaa tcaaatttca caaaaaagcg
    11161 ttgattcttt gatagcaagt gcgcaaaaac attttaactt agtatcgcaa ttttacaaaa
    11221 gaaaaaaaca aattttaggc tatgatgagc ttaaagacta tgacagatat gcacccatag
    11281 gaaaagaagc aagttttgat tttaaaacaa gtaaaaatat tgttttagag gcatttcaag
    11341 ctttttctcc tcaattttat gatatagcaa aaaatgcttt tgatcaagat tggattgatg
    11401 tttatccgca agaaaataaa caagggggtg ctttttcgca ttctgcaact tctgatgcac
    11461 atccttttgt tttattaaac tacaccaata aaagacgcga tctttttaca cttgcacatg
    11521 aattaggaca cactatccat caaaaacttt cttataatgt aagctattta aatcaaaata
    11581 cacctttaac caccgcagaa acagcttcag tttttgccga aatgctcgta tttgatttta
    11641 ttaaagataa gttaaaaaaa gaagaactct tatctttata tgcaaataaa atcgaagata
    11701 tttttgcaac tttttataga cagattaatt ttacttgttt tgaaagacgc ttacatgctc
    11761 aagaaaatga acttagcacc gaagaaatca ataaaatttg gatggaagaa tctcgaaaga
    11821 tgtttcaaga cagcgtaaaa cttacaaaaa attatgcttc ttggtggagt tatattcctc
    11881 attttatcca ttctcctttc tactgctatg cttatgctta tgcacaactt ttagttttag
    11941 ctctttatgg actttacaaa agtaaaaaat gtgaaaattt taaagaactt tatatcaaaa
    12001 tgctttcttt aggcggaagt gtgagtccaa aagaactagt aggaatgttt ggctttgata
    12061 tagaagatga aaatttttgg gaaataggca taaaagaaat tcaaaaactc atcaatgaat
    12121 ttatggagtt acaatcatgc tagaaaaaat tttaaaaaat gaaaatttta tccataccat
    12181 gcaaaagcat tgccatgaga ttatttcaca tcttatagaa gaaaatatag aattttcaat
    12241 agttgcaaat acaaatttca tagattttaa tcctgaactt cccaaagagc ttgatgttaa
    12301 acaaaatcct tatgctcttt ttgctcttgg aggatacacc tttgaatcca tacaactaaa
    12361 taaagatttc attcaatttc acgcaggttt tggcaatgat gattttgata gttttgtaaa
    12421 ggttgattta ggagctatca cgcaaattca aatagaaaat agcattttat ttgttaattt
    12481 tagcctttat aaacgcgaag atagcaaaaa tttacaaaaa tcgaaaaata tatttttaaa
    12541 taatccaaaa aataaagata ttttcaaaaa atgaatctat ttgaagattt aaatgatagt
    12601 caaaaacaag cggtaagcca cattgatgga gctatgctta tcctagcggg tgcaggtagt
    12661 ggaaaaacca aaactatcac cactcgtctt gcttatctta tcggtgaagt aggcatcccc
    12721 tcgcataaca ctcttactct tacttttaca aataaagcag ctagtgttat gcgtcataga
    12781 gcattaaatt ttctgcaagg caatcacaat cctttgcttt gtacctttca taaatttgga
    12841 cttttatttt taaaactcca ttttgaaaga ttggagcgta aaaatagttt tattgttatc
    12901 gatacagatg atacaaaaaa aataattaaa gacttaatcc atgataaaaa caaagataat
    12961 gtctatgata ttatcaaata catatcttat tgcaaaaatg aaggcaaaag agtaagcaat
    13021 gtctttgaag atttaaattt actaaaagaa cataattttg aaaaatatca aaatgaatac
    13081 aaatttgcca actattaccg tgcttatgaa gaatacttat taaaacaaaa ttttgtagat
    13141 tttgatgatc ttttattgct aagcaatctc attttagaaa atgatataaa ttttgccaaa
    13201 gaacaaagct tactttataa ttacattaca gttgatgagt atcaagatac taataccttg
    13261 caatataaaa ttctaaaaaa tctatgttgt atgcatgaaa atatcacagt tgttggtgat
    13321 gatgatcaaa gtatttatag ttggcgtgga gcaaaaattg aaaatatttt aaattttcaa
    13381 aatgatttta aaaatgttaa acttgtaaaa cttgaacaaa actatcgttc agtagggact
    13441 attttacaag cagcaaataa tctcatatct cacaatgagc aacgacttgg aaaaacttta
    13501 atctgcacta aagatactgg ggaaaatatt aaaatattaa aaaacgaaaa cgaaaaagat
    13561 gaaggtttat atatcgctca agaagtgaaa aaattgctaa attctggagt agaagctaaa
    13621 gagatcgcca ttttatttcg agttaatgca ctatcaagag caatagaaga agcatttatg
    13681 aagaaacaaa tttcttataa actacttagt ggtatgcgtt tttatgagag attagaaata
    13741 aaagatttaa tctcgtatct tagacttatc ttaaatccaa gcgatgattt gtcgtttaaa
    13801 cgtattatta atcgccccaa aagatccata ggagaaaaag ccctaaaaaa tttagaagaa
    13861 tatgcaaaaa aacgtcaaat ttcacttttt gatgccctat gcgaaagcga tggtggtgta
    13921 ggaattttaa caacaaaaaa agcacaaaat gaagcaaata tttttataca aaatattcac
    13981 actctaaaaa gctacgataa tgcaaaaaag gtttttgaca atatagaaga attatttaaa
    14041 attaaagatt atttttcaga gcaagatgat ggagatgaaa gaatcagaaa tcttgatgag
    14101 ttttatgcta atctaaaaga aaaactcaaa gaagatccca aagcttcttt agaagatcta
    14161 cttagtgaaa tttctttatt aagcgatcaa gataatttag atgaagaatg tgtttgcttg
    14221 atgagtattc atgctagcaa aggtttggaa tttgattatg tttttataat aggctttgat
    14281 gaaggatttt ttcctttaaa tagcgaagaa aatctcgaag aagaacgccg tcttgcttat
    14341 gttgccatca ctcgcgccaa gaaatttctc acaataagtg ttgcaaattc tcgtttttat
    14401 catggttcaa gagcaaatat caatcctagt cgcttcttag aagaaagtaa attaaccaat
    14461 gaaaaatcaa aaaatcaaaa tatacaaaaa actagttttt gcaaaggaga tctagttaaa
    14521 cataaaattt ttggcattgg cagggttgtt gaagttaata aaagcggaaa agaggaaaag
    14581 cttaatatta attttggtgg tataatgcgt gtaatcatgg caagctttgt ggaaaaagca
    14641 gtatgaacaa gatctttgca gcctttaaac caaagggttt gagttctaat gcctttttaa
    14701 gtactttaaa gaaaaaatat aaaaataaaa aagcaggata ttctggcact cttgatcctt
    14761 tcgccaaagg ggttttaatc gttgcatttg gacaatatac aaaacttttc cgttttttaa
    14821 aaaaaactcc aaaaacctat aaagctactt tatggcttgg agtttactcc ttaagtcttg
    14881 atgatcaaaa tataaaagaa attaaaaata taaaagaatt tgatcttgca aatttacaac
    14941 aaatcattga tcaaatgcaa ggaattatct cctatacacc accgcaattt agcgccaaaa
    15001 gaatcaatgg aactcgcgcc tatgaacttg caaaaaaagg tatagaagca aatttaaaac
    15061 cttgccaaat ggaagtattt gattgcaaga tcttaagcta taatcatcct tttttaaata
    15121 ttgaaatcac agtcagtgaa ggtgcttata taagatctta ttgtgaactt tttgctagaa
    15181 aactaggtat taatgcgact ttaagctctt tagagcgcat taaagaaggc aaatttgttt
    15241 ataataatga gaaaagctta aatgtgttaa aatacattaa cctaaagcca aattttatca
    15301 aggatttaaa taaactcgaa aatggtgcta aaatttttgt cgaagaatta gaatttcatg
    15361 atgaaggaga ttattatatt gaaacagaaa aatattttag cataattaat attaaagaaa
    15421 atacagtaaa atatcttcta aataaggttg aaaaatgtta atattatcaa gaaaagaaaa
    15481 tgaaagtata attatcggag aaggtataga aatcaaagtc gttcaaacag ggaaaggata
    15541 tgccaaaata ggcatagaag ctccaaaatc ccttatgata cttagaaaag aacttgttca
    15601 acaagtaaag gatgaaaatt tgcattctgt tgttcagaat gatattaaac ttgatgactt
    15661 aagcaaaaaa ctaatcaaat gaaagcttac gctaaagcaa atattttttt aaaacttacc
    15721 ggttttgact caagaaaata tcatctttta gaatcacgat ttatactttt aaaagatctt
    15781 tttgatgagc ttgagcttgt tgataaagaa ttagattcta aaaaagaatt tgaaatcatt
    15841 agtaatttta aatgcgaaaa taatattatt caaaaggctt atttgctact ttctagaaga
    15901 tataataacg aattaaaaga attatttagc aaaaaaagcc taaaactcac aaaaaatatc
    15961 ccagtatgtg ctggacttgg cggtggaagt agcgattgtg cgagtttttt actactaatg
    16021 aatgaaaccc taaatttaaa attaaacctg caagaactta taaatttaag cacgcaacta
    16081 ggaagtgata ttgccttttt tttaagtggc tttcactctg ctaatgtaag tagctgtggc
    16141 gaaattatag aagaatttga agatgacata cctaatttaa aatggacttt tccacaaata
    16201 tcttgccaaa ctaaagctgt ttatgatgaa tttgatagag aaatatttga ctttcaaaaa
    16261 aacaataatc aagcgcaaat ctacaaaaaa ctcagcacaa aagagttgtt acaaaacttt
    16321 aaaaacaaag aattaaatga tttatttact ccttgtgcaa ctttatatcc taaaatgaag
    16381 tcttacttgc aagaagattt ttttctaagc ggtagcggta gtagtgtttt taaggttgat
    16441 cgatgaaaat tattgcgaga aataaaaaag ctttatttga ttatagcatc atagaacgct
    16501 ttgaagccgg aattgtcctt aaaggaagtg aagttgtagc cttaagagca ggaagagcaa
    16561 atcttaaaga ctcttttgtt cgcattataa aaaatgagat ttttttactt aattctcata
    16621 tttcattgct ccatactaca cattctttct ataaacacga agaaagaggt gctagaaagc
    16681 ttttaatgca tagaaagcaa attgataaat tattaggtaa agtaagtata gaaggatata
    16741 ctatcgttgc attagatctt tattttaaca caaaaaataa agtaaaagct acccttgctt
    16801 tagctaaagg gaaaaatttg cacgacaagc gtgaaacttt aaagaaaaag caagccgatt
    16861 tagaagctaa agctgctatg aaaaattaca aataaaggaa aataaatgaa aaaaatttca
    16921 gccctatttt taataagttt agcatttttt cttaatgctt gctccaagga agaagaaatt
    16981 caaaatgatt ttatgtttga agagtatcac aaaggagata aaatagtctt aaatagtgta
    17041 aatggtggaa gcaaaacttt aataagaaca gataaaggtt ttgtggtgga aggagaggaa
    17101 ggaaaagttc taatgtttga tttttttggc actttttgca ccccatgtaa agaagaagct
    17161 ttagatctta gcaaactttg gaaaaataat tctagcaaat ttatcattat aggacttaca
    17221 cattttgaag atgttagcga tgaaacagtt aaaaaattcg cggatgatta tggtgcttac
    17281 tattttctaa gcaatgacag ctctaatgat cgtattattg ctcaaatttt aaaagatata
    17341 gactatcaaa atatggagca acttcctttt aaagttgttt taaaaaatgg aatttatcaa
    17401 aaaataagcg attactggaa taataatact ccaacaaatt tttatcttgg taaaattcca
    17461 acagaactca tgcaagaaga tttaaataaa atctacaaag gaaaataatg ccaaaaaccc
    17521 aaactctaga gcaaacaaaa cttagtgaac caaaaatgta taaagttata ctcttaaatg
    17581 atgatgtaac aaccatggat tttgttatag aaattttgat gaatattttt catcaaaacc
    17641 ttgagaaagc aagtcaaaca atgttagaaa ttcatcacaa tggttctgga atttgtggca
    17701 tttacaccca ggaaatagct ctttcaaaac aaaaaaaagt tatggatgcg gctaaacttg
    17761 ctaattttcc actacaagca aaggtggaag aagaatgaaa taccaagaaa atttacaaaa
    17821 atatcttgat aatgccaaaa atctaagctt aataaatcac catgaatttg ttacctgtga
    17881 gcatgtactg tttgcattac taaaactaag cactgatttt aaggatatat ttgaagaatt
    17941 ttcagatgga gatcttgaac ttctagaaac tgaattaaaa aattacattt ctcaaaacaa
    18001 tcaagttatt aaacaagaaa tagaacctac aatatctgtt gttttagatg aaatcttact
    18061 ttcatctaaa aataaaaata atgaaattaa aattatagat tttttagaaa agctcataca
    18121 ggattcaaga agttattcta gctatctctt aaaaaaacac aacataaatc ttaacaaaat
    18181 tcaagaactt caaaatcatg aaaatataca aaatttaaac aaccacacaa gtgatttaac
    18241 acttttggct caaaatggca agattgatcc tttaatagga agaaaatttg aacttgaaag
    18301 aatgatgcaa attctttcac gtcgcaagaa aaataatcct attttagtag gagaagcagg
    18361 agttggcaaa acggccattg tagaaggatt agcattagct attgcggaaa aaaaggtgcc
    18421 taaaaactta caaaatgcaa aaatttttag tcttgatatg gctagtatac ttgcgggaac
    18481 aaaataccgt ggagattttg agaaaagaat taaagaaatt ttaaatgaac ttgagaaaat
    18541 acccaatgct attttattta ttgatgaaat tcacactata gtaggagctg gaagcacagg
    18601 agaatctcat actgattttt ccaatctttt aaaaccagct ctaagtaatg gaactttaaa
    18661 atgcataggt gcaacaactt ttatggaata taaaaatact tttgataaaa ataaacccct
    18721 aagtcgccgt tttgctaaaa taaatgtaga tgaaccaagc caagaagaaa gcttgcaaat
    18781 tcttaaagga ttaaaaaaca aatatgaaga atttcatcat ataaaattaa acgatgaaat
    18841 tcttcaatat gctgtaattt ggggtaaaaa attttttaat gataaatttt tacctgattg
    18901 tgctatagat ctgatcgatg aacttggcgc ttcttttgct ttaaatccaa aagctaaaaa
    18961 aaatgccaat ttaaaagatt tagaaaatgt tttagcaaaa atgacccacc atcacaaaat
    19021 atttgaattc gatcaaaata aagctttaat gaatttaaaa acaaatttaa aagcaaaaat
    19081 ttttggccaa gatgaagtta tagatagcct tgtttcatca cttaagcaaa gttttgcggg
    19141 atttaaaaat tctaatacac cacgcggagt gtttttgttt actggatcaa gtggagttgg
    19201 aaaaacagaa ctttgcaaag ctttagctga atttttaggt ttaaatttag aacgctttga
    19261 tatgagtgaa tatgcagaaa aacatactat aagtaaacta ataggatctc cagctggata
    19321 tataggtttt gaagagggtg gacttttaag caatgctatt cgcaaaaatc ctttcagtct
    19381 tgttcttttt gatgaaatag aaaaggctca tcctgattta agcaatacct ttttacagat
    19441 ttttgacaat gctgaactca ccgacaatag cggtcttaaa gtagatttta aaaatacaat
    19501 cat
//
LOCUS       DARGED010000019        18498 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.019, whole genome shotgun sequence.
ACCESSION   DARGED010000019 DARGED010000000
VERSION     DARGED010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18498
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.019"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..181)
                     /locus_tag="SFZ84_000541"
     CDS             complement(<1..181)
                     /locus_tag="SFZ84_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG8202691.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEF"
     gene            complement(154..528)
                     /locus_tag="SFZ84_000542"
     CDS             complement(154..528)
                     /locus_tag="SFZ84_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG8202692.1"
                     /translation="MIFDKNFSYAFDENACEKCGGRCCTGESGNIFASKEELEVLRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(518..1219)
                     /locus_tag="SFZ84_000543"
     CDS             complement(518..1219)
                     /locus_tag="SFZ84_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG8202693.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGALYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(1225..1374)
                     /locus_tag="SFZ84_000544"
     CDS             complement(1225..1374)
                     /locus_tag="SFZ84_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202694.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            complement(1392..1468)
                     /locus_tag="SFZ84_000545"
     tRNA            complement(1392..1468)
                     /locus_tag="SFZ84_000545"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1432..1434),aa:Arg,seq:cct)
     gene            complement(1497..3572)
                     /gene="fusA"
                     /locus_tag="SFZ84_000546"
     CDS             complement(1497..3572)
                     /gene="fusA"
                     /locus_tag="SFZ84_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG8202695.1"
                     /translation="MSRNTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(3586..4056)
                     /gene="rpsG"
                     /locus_tag="SFZ84_000547"
     CDS             complement(3586..4056)
                     /gene="rpsG"
                     /locus_tag="SFZ84_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG8202696.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(4125..4511)
                     /locus_tag="SFZ84_000548"
     CDS             complement(4125..4511)
                     /locus_tag="SFZ84_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG8202697.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            complement(4631..9184)
                     /gene="rpoC"
                     /locus_tag="SFZ84_000549"
     CDS             complement(4631..9184)
                     /gene="rpoC"
                     /locus_tag="SFZ84_000549"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG8202698.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(9177..13313)
                     /gene="rpoB"
                     /locus_tag="SFZ84_000550"
     CDS             complement(9177..13313)
                     /gene="rpoB"
                     /locus_tag="SFZ84_000550"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG8202699.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVETRQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(13422..13799)
                     /gene="rplL"
                     /locus_tag="SFZ84_000551"
     CDS             complement(13422..13799)
                     /gene="rplL"
                     /locus_tag="SFZ84_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG8202700.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(13820..14299)
                     /locus_tag="SFZ84_000552"
     CDS             complement(13820..14299)
                     /locus_tag="SFZ84_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG8202701.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(14451..15152)
                     /locus_tag="SFZ84_000553"
     CDS             complement(14451..15152)
                     /locus_tag="SFZ84_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG8202702.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(15207..15632)
                     /gene="rplK"
                     /locus_tag="SFZ84_000554"
     CDS             complement(15207..15632)
                     /gene="rplK"
                     /locus_tag="SFZ84_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG8202703.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(15658..16191)
                     /gene="nusG"
                     /locus_tag="SFZ84_000555"
     CDS             complement(15658..16191)
                     /gene="nusG"
                     /locus_tag="SFZ84_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG8202704.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(16201..16380)
                     /gene="secE"
                     /locus_tag="SFZ84_000556"
     CDS             complement(16201..16380)
                     /gene="secE"
                     /locus_tag="SFZ84_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG8202705.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(16399..16474)
                     /locus_tag="SFZ84_000557"
     tRNA            complement(16399..16474)
                     /locus_tag="SFZ84_000557"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16439..16441),aa:Trp,seq:cca)
     gene            complement(16487..16645)
                     /gene="rpmG"
                     /locus_tag="SFZ84_000558"
     CDS             complement(16487..16645)
                     /gene="rpmG"
                     /locus_tag="SFZ84_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG8202706.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(16698..17897)
                     /gene="tuf"
                     /locus_tag="SFZ84_000559"
     CDS             complement(16698..17897)
                     /gene="tuf"
                     /locus_tag="SFZ84_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG8202707.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(17966..18040)
                     /locus_tag="SFZ84_000560"
     tRNA            complement(17966..18040)
                     /locus_tag="SFZ84_000560"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18006..18008),aa:Thr,seq:ggt)
     gene            complement(18145..18221)
                     /locus_tag="SFZ84_000561"
     tRNA            complement(18145..18221)
                     /locus_tag="SFZ84_000561"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18185..18187),aa:Gly,seq:tcc)
     gene            complement(18228..18313)
                     /locus_tag="SFZ84_000562"
     tRNA            complement(18228..18313)
                     /locus_tag="SFZ84_000562"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18277..18279),aa:Tyr,seq:gta)
     gene            complement(18363..18438)
                     /locus_tag="SFZ84_000563"
     tRNA            complement(18363..18438)
                     /locus_tag="SFZ84_000563"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18403..18405),aa:Thr,seq:tgt)
BASE COUNT         5618 a         3820 c         2526 g         6534 t
ORIGIN      
        1 aaaattcatc tctggcttct ttgtattgtt tataatactc ataattataa gccttcataa
       61 cccttaaatc aaaatcattg cttttatatt ttgtataatc aggataaaca acattgattt
      121 ttgaacttcc acaagctgcc aaaaaaaagg ctgctaagac aaataacaaa tacctataca
      181 ttctttttct aattcctttt gatgtgtttt aaaatattcc caaaatggaa aagttctgca
      241 ttgttttgga cgaaaatcgt agatactaca atttcttttt tgagtatcaa aaaaaatgca
      301 agcaaaacca tcttcacatt cgacttcctt aaaactcatt ttaaagccca cttttctcaa
      361 gtatttttca gcaaattctt tgctttctaa atttaaatgc tttcttaata cttctaattc
      421 ttccttgctc gcaaaaatat tgccactttc tccagtgcaa caccttccac cgcatttctc
      481 acaagcattt tcatcaaaag cataagaaaa atttttatca aatatcataa ctttttaacc
      541 taaatcttaa gtgaatttct tgcatttgtt tgcttaaaat ttcattttca tatacaaaaa
      601 aaggaggtaa aatctcacaa ggcgattttg aacctttttt tacctgtatc aaaacaagtc
      661 ttgctttttt gttttgatgt gtatgtacaa agcaaagctt tgttattttc attttcatat
      721 cttttaaaat aaaacaaatt tcatctaaag ctaaagcttc atagcaaaaa tacaaagcac
      781 catttggctt aagcatagaa tttgttttag ctaaaaagct atgcaagggt aaaaattcct
      841 gaaatttact tatagcttta tgctgatctt cactcttgta agctccttgt ctataaaatg
      901 gaggattgca gactatgaag tcaaattttt ttatgatttg aaattgatta aaatcatcat
      961 gaaaaatatc gccttgtatt ttgttggatt ttaaattttt ttcaatcaat tttatatttt
     1021 ctttttgaat atcaatcaaa gataaactta aatttgcaat atttttttta agtaaaatac
     1081 ctatgatacc acagcccgca cctacatcaa aaacagcgcc tttaattcct tgttttaaaa
     1141 taaaatcagc taaaattaaa gaatcactat tgtaacgata cccttgtgat aattgtgcta
     1201 gcgtaatcag atctgacata tattttaatg cgttggaatt ttaatgcgtt ttggagattg
     1261 ttctttaaat atatttcgtt cttttgttat attattatct tctttaaaat ttactgggct
     1321 ttgtgctgcc aaaaaagaaa ttacaaaagt tataaaaaaa gcaattttta tcataataac
     1381 accccataaa atggtgtcca cggcgagatt cgaactcacg gcctcaaaat taggaatttt
     1441 gcgctctatc ctgctgagct acgaggacag aaagcgggaa aaatcccgct aaaaatttaa
     1501 ccgtttcttt ttttgatgat ttcatccgca acatttttag gaacttcatc atagtgatca
     1561 aattccatag aataagtcgc acgaccttga gtttgacttc taagatcagt agaataacca
     1621 aacatttcag ccaaaggaca aaatgctgtg atgattttat ttccaccacg ctcatccatg
     1681 ctatttactt gaccacggcg tttgttaaga tctccaataa catcacccat gtaatcttca
     1741 ggagtttcta cttcaacttt catcataggc tctaagatca cagcacctgc ttttctagca
     1801 ccttctttaa agcccataga agcagcaagt ttaaacgcca tctcagatga atccacctcg
     1861 tgataacttc catcataaac agttacttta acatcttcca caggataacc tgctaaaaca
     1921 ccattttgta atgcttcttg aacaccttta tcaactgcag gaatgtattc ttttggaatt
     1981 actccacctt tgatatcatt aacaaattca tatccactac ctggctcaag tggttcaagg
     2041 cgtaagaata catgtccata ctggccacga ccacctgatt gtttagcata tttgtattct
     2101 tgttcaacag tttttctaat agtttcgcga taagcaactt gtggttgacc tacttcagct
     2161 tcaactttaa attcacgaag cattctatca acgataattt caaggtgtaa ctcacccata
     2221 cctgaaatga tagtttggcc actttcttca tcagttgaaa ctctaaaact tggatcttct
     2281 tgtgctaatt tatttaaagc aatagacatt ttttcttgat cagctttagt ttttggctca
     2341 actgcaacag aaataacggg atctggaaaa tccattcttt caaggattac cttatctttt
     2401 tcacttgcaa gagtatcccc tgttaaagta tctttaagtc ctacaacagc accaatttcg
     2461 cctgcgtaaa gcactttaat ctcttctctt ttattagagt gcatttttaa caaacgacca
     2521 attctttctt ttttatcttt agttgagtta taagcataag agccactttc caaacaacca
     2581 cgataaacac gcacgaaagt aagttgtcct acaaatggat ctgtcatgat tttaaatgca
     2641 agccctgcaa actcgccatc atcagttgat tttacagaaa cttctgtacc atcttcatat
     2701 tcacccttga tatttgccac ttcatcagga gctggcaaat aagccacaac agcatcaagt
     2761 aaaggttgaa cccctttatt tttaaacgct gtaccgcaaa gcataggaac gatagaaaga
     2821 cttaaacatc ctgctttaat ccctgtttta atctcttcaa gacttaattc ttctccgcct
     2881 aaatattttt ccatcaactc atctgaagtt tcagaaactg cttctatcat ttttgtgcga
     2941 tattcttctg ccttttcttt aagttcagct ggaatttctt tttctacata atccgttggc
     3001 ttagtatcat cttcccaaac taaagctttc atagttacaa gatcgattac gcctttaaaa
     3061 ttatcctcag caccgattgg aatttgaagt ggaactggat tagcttttaa acggttgcga
     3121 atttgatctt ctacattata aaaatttgca ccgattctat ccattttgtt tacaaatact
     3181 attcttggaa caccatattt atttgcttgt ctccaaactg tttcactttg aggctgcacc
     3241 ccacccactg aacaaaatac cgcaacagca ccatcaagaa cacgcataga tctttcaact
     3301 tcgattgtaa aatccacgtg gcctggagtg tcaataagat tgatttgatg atctttccaa
     3361 aaacaagttg tagccgcaga agtgatagta atcccgcgct ctttctcttg ctccatccag
     3421 tccatagttg cagcaccatc atgaacttca ccgattttat gactcatacc agtaaagaaa
     3481 agaattcttt cagatgtagt cgttttaccc gcatcaatgt gagcagcaat accgatattt
     3541 ctaacttttt ttaaaggagt atttcttgac atacacactc cttccttacc aacgatagtg
     3601 agcaaatgct ttatttgctt cagccatttt ataagtatct tctttcttct taaatgaagc
     3661 acctttgcta ttagcagcat ccaaaagctc agctgcaagt ttatcaatca tagttctttc
     3721 gcttcttttt cttgcaaaag aaataatcca acgaatcgcc aaagcttgtt gtctagcagg
     3781 gcgtacttca actggaactt gataggtcgc accacctaca cgacgagatt ttacctctaa
     3841 taaaggctta atattttcaa tcgcatcatt aaaaatatca ataccttttt tctcgccacc
     3901 ttttttatcg atagcttcta aagcaccata cataattgtt gtagctgtgc tttttttgcc
     3961 atcatacatt aaagaattaa taaattttgt gattacttta ttaccataaa tcggatcagg
     4021 taaaacttct cttaccggag cttttcttct tctcattatt tttccttcaa attttaaatt
     4081 ttactcaaac aaaatcaaat ctaacggatt tgtctgtatg aagattattt tgcagcgcct
     4141 gctttagggc gtttagcacc atatttagaa cgagaaactg ttctttttgc aacacctgct
     4201 gtatcaagag caccacgaac gatgtgatat ttaacccctg gtaagtcttt taccctacca
     4261 ccacgcacta aaacaatgct gtgttcttgt aagttatgac cttcaccgcc aatatagctg
     4321 atcacttcaa agccactagt aagtcttact ttggcaactt ttcttaacgc tgagtttggt
     4381 tttttaggtg ttgtagtata aaccctagtg caaactcccc ttctttgtgg acaattttta
     4441 agcgctggag atttagattt ttctaaaact tttttgcgct cttttctaac caattgattt
     4501 atggtaggca caataattcc tttctttaaa aatgtaataa actttggatg atatctaatt
     4561 tttgcttata ttttagttaa aaagattgaa aatgaggaaa tatagccccg aagggctata
     4621 aaatagagtt ttattcttgt tctttaagtt ttaaattttg ttcgccataa agccctgttc
     4681 caacaggaat cattctacct agaataacat tttcttttaa atcttctaag tagtcaaatt
     4741 tacctgctat acttgcttca gttaaaactt tggtagtttc ttggaatgaa gccgcagaaa
     4801 tcacactatc acttccaatc gctgctcttg ttacacctaa aagcacaggc tcggcaatag
     4861 ctggttctcc acccattcta atgattcttt cattttcttc acggaattta cgtcttgaaa
     4921 ccaaatcacc ttcaataaat ttcgtatgtc cactatctac aacttttact tgtcttagca
     4981 tttgagaaac gataacttct atatgtttat cagaaatcac aacaccttgt ccgcgataaa
     5041 cttgctgaat ttcagaaatc aaataataat gcaaggcttt ttcacctaaa attttaagca
     5101 catcatgact cgaaacaact ccatctgtaa gtttttcacc tgcatgaata aactctccat
     5161 ctcttacttg aatatgtttt gatttgtcga ttaaatactc agcacttgtt ccatcttctg
     5221 cttggataat aattctttct ttagaacgca aaggcttatc aaaacgaaca acaccatcaa
     5281 tttctgcaat cacagccgca ttttttggtt ttcttgcttc aaaaagttca gaaactcttg
     5341 gaagacctcc tgtaatatcc tttgatttag ctgctgcttt tggagttttt gctaaaatat
     5401 ctgcttgagc aattttatcg ccgtcatgaa caaaaataac ggtttttggt tcaaggtgat
     5461 aacgcacagc tttatcacct tttcctgcaa ttaccaaagt tggtctaact ccgctaggta
     5521 aatactcatt aattactaaa gaacgcttac ctgtagcttc atcaatttgc tcatcagcac
     5581 tataacctgc ttcaatatcc tcaaagctta caacaccatc aatttctgca atgatagtat
     5641 tattataagc atcccattct gcaatcactt ttctttcttt tttaggagca cttgcaatga
     5701 tagtatttgc gtcatcgatt ttttcactat cgttaaattc tatcttagat tctcttggga
     5761 tatagtgtct ttttgcttct ctatcatttt catcagcaat cactacaaag aatccttttt
     5821 ctttaacaat atcacctttt ttaacatttt ttactctatc taaaccatcg cctttaagga
     5881 tgtaaaattt gagtgttcct ttttcgcctg ctttgatatt ttgaactaca ggctcgccat
     5941 cttctactaa aatttcactc gcaaaaggaa tacgatttgg tacattccaa ccctctttaa
     6001 tcacttctac gatactttca ttttcttcta cttgcatgcc gctttgatat ggcaaataaa
     6061 gttttccatc tatactgcca cttacacctg ctaattcatt tggtttagca agatcgtatt
     6121 ttcttaatat gtattttact tcttgttttt tatctttaat agaaacaatc acatcttcat
     6181 gaatattttc tatattaatc acacctttaa atggagtttt gatttttggc tccacaagta
     6241 aaaccgccgc atttctacga tttgctacga tatttttacc ttctttgttt ttataagttt
     6301 taagattata aaatcttata aaaccttctt tttgtgcgct tacttgtcta tcttgtaaat
     6361 ccgtacttgc agttcccccg ctatggaaag ttcttagagt tagctgcgtt cctggttcac
     6421 cgatagattg agcggaaata attcccactg cttcgcctgg ttttactaat ttaccttcac
     6481 caagattgat accataacat tttgcacaaa ttcctttttt agctttgcag gtaataggag
     6541 tgcggatatt gacacttttt ataccgcttt cgccaagaat ttttgctttt tcctcatcca
     6601 ttaaagtacc ttctgcaaaa agcacagaat ttgtaatagg atcaatcaca tcctcagcta
     6661 aaaccctacc taaaattctt tcttctaaag tttctataat agaactatct gcggtaattt
     6721 cattgatttc aacaccctca tgtgttccac aatcttcaat ggtaattttt acattttgtg
     6781 caacatcgat gagttttctt gtcaaataac ccgcatttgc tgttttaaga gcggtatctg
     6841 caagaccttt tctagcaccg tgagttgaaa taaagtattc aagaacattt agcccttcac
     6901 ggaaatttga aataataggc gtttcgataa tagaaccatc aggtttggtc ataagtcctc
     6961 tcatcgcagc aagctgagaa atttgagctg cactacccct agcaccagaa tctgccatca
     7021 tataaataga gttaaaacct tctttatctt tttctacaag cttcatcatt tcttttgaaa
     7081 gaacattgtt tgtacttttc caaatatcaa tgattttatt gtatctttcc cctgaagtaa
     7141 tcaaaccgag attataagaa ttttgaattt ctcttacttg tttttttgct tcatcgatag
     7201 ctttttgttt atcattagga acaataatat ctgcaatcga aattgaaata cctgctttag
     7261 ttgcatattc aaaacctaaa tttttaagtc tatccaagaa acttgctgta atctctaaac
     7321 caccttgttt ataaacataa tccacaagcg cagcaatgtc ttttttcttt aagactttat
     7381 tccagctatt ttcaggcaca aaatcaggta aaatggattt aataatcaat cttcctgctg
     7441 tagtggtaat ctttctacca tctaccatag tttgtatact cgcatgaata tccaaacact
     7501 tgctttcaag cgccatcatc acttcatcaa tacctgtaca aattttatgc gaacctttag
     7561 cacctgcttt ttccaacgaa agataataaa ttcctaaaac catatcttgc gatggaacgg
     7621 ttacagactt accgcttgct ggtaaaagaa tattcattga tgaaagcata agcactttac
     7681 attctgcaat agcctcttga gaaagcggta catgcactgc catttgatcc ccatcaaagt
     7741 ctgcgttaaa tgctgcacaa accaaaggat gaagttgtat agccttacct tccactaaaa
     7801 caggatgaaa agcttggata gaaagcttat gcaaagtagg tgcacggttt agcataacag
     7861 gatgtccctt tactacctct tctaaacatt cccaaacttc attggttttg ttttctatca
     7921 tttttttagc ttgttttact gtggttgcat aacctttttc ttcaagctta gctaaaagat
     7981 gtggcttaaa gagctctaaa gccatttttt taggtaaacc acattgatcc attctaagtt
     8041 ttggacctac aacaataacg ctacgacctg agaaatccac ccttttacct agtagatttt
     8101 gtctaaaacg tccttgtttc cctttgatga tttcacttaa agattttaat gggcgtttat
     8161 ttgctccttt tacagcatta gcacgacgac cgttgtcaaa aagtgcatca acagcctctt
     8221 gaagcattct tttttcattt ctgataatga tttcaggtgc atcaagttcc ataagttttt
     8281 taagacgtgt atttctattg ataacacgac gatataagtc attcacatca gaaactgcaa
     8341 attttccacc atctaaagcc actaaaggac gcaaatctgg cggtaaaact ggaagatttg
     8401 taatcatcat ccattcagga cgatttggta cggcttcatc actatcggta ttggcgttta
     8461 aatttgaatt taagaaattt tctactactt ttaagcgttt aatgatggtt tttttcttag
     8521 cctctgaatt tgtagccgcc atttcttctt taagctgatt taaaagtgcc acaagatcta
     8581 aatttgcaag taaatcacga acaacttctc cacccattct tgctttaaag ccactatttt
     8641 catagcgttg cattaaattt tgatattgct cttcgtttaa aacatcacaa tattctactt
     8701 ttttggtgct ttcattatca tagaaagcat cgcctggatt ttcaacgata taagcttcat
     8761 aataaagcac acgctcaaga tctttcatct taacacccaa aagcgttcct atacggcttg
     8821 gaagagaatt aacataccaa atatgagcca caggagttac aagctcgata tgccccattc
     8881 tagaacgacg cacttttgaa tttgctactt caacaccaca tttttcacac ttaacgcctt
     8941 taaaacgcat ttttttgtat ttaccacaaa gacactcata atctcttata ggtccaaaaa
     9001 tctttgcaca aaaaagccca tctctttcag gctttaaggt tctataatta atagtttctg
     9061 gtttttttac ttctccataa gaccatgatt tgattttttc aggacttgca agtctcagtt
     9121 gaaatgcttc aaaatctcta ggtcttgcat cttctttaat ttctattact ttaaatttac
     9181 tcattatctt catccttatc aaaaatctca acatctaaag caagagattt aagctcattg
     9241 gttaatacaa aaaatgtttc aggaattcct gttgctggaa cattttcacc ttttgtcaat
     9301 gctttataag cactaaatct accttctaca tcatctgatt ttatggttaa catttctctt
     9361 aaagtgtgag ccgctccata agcttcaagt gcccaaactt ccatttctcc aaatctttgt
     9421 cccccaaaga gtgctttacc acccacaggt tgttgggtaa ccaagctata aggtcctgta
     9481 cttcttgcat gaactttttc atcaaccaag tgatggagtt ttagcatata catacatcct
     9541 acatgaacac gctctgcaat tttttcccct gtgcgtccat cataaagttc tgttttgcca
     9601 tccatatcta tcttagccat tttaaaaagc ttgctaaatt cttctatatt tacaccttca
     9661 aaaacaggag tagaaaattt aactccttta ctccagtctc tagcatagtt taaaagctct
     9721 tcatcgctta agcttttaat aaattctttt tcgtttgcaa gtcttggaat agaacaaatt
     9781 tcaagcattt tcgctcttaa ttctttaaga aaatcttttt gctttctatc aaaaatttct
     9841 tgaatttgat ccccaagtct aagtccaact aaacctaaat gactttctaa aatttgacct
     9901 atattcatac gacttggaac gccaagtgga ttaagcgcaa tatccacact cttaccattt
     9961 ggcaaataag gcatatctac ttcaggaact atagttgaaa ctataccttt atttccatga
    10021 cgtcctgcca ttttatcacc gactttaagc tttctttttg tagcaatata aactttaaca
    10081 agcttaatta ccccacttgg taaaatatca tctttttcta aaatttcaag cttttcatcg
    10141 tgttctgctt ttaatttttt cttctcattt tggaaatgat tttttaaatc atcgtattct
    10201 ttttgaatct ctttagaata agctttaatc aaagttgtta aagtaaaacg attgattttt
    10261 tcaagttcgc taatatctgc agtttgtcct tttttataat ttttatctcc aattttttga
    10321 tcgctattta aagaagcttt ggaaagaaga gcacaaacac gaagcatttc ttctctatcc
    10381 atcatcaaaa gtctatcatg atgctctttt tctaaagcca ttttttcttt atcataagat
    10441 tttattgcgc gatcatcttt ttcatagcct tttttagtga aaattttaac atccacaaca
    10501 acaccctcta aagaagcggt tgcataaagg gatttattca caacatgtcc tgctttttct
    10561 ccaaaaatcg ctcttaaaag tctttcttca ggagttggtt taacctcacc ttttggagaa
    10621 accttaccca ccaaaatcat acctggtttg atatgggtac caatttttgc aataccgctc
    10681 tcatcaagat gcgcaacatc ttcttctttt acatttggaa tatctttggt aatttcttct
    10741 ataccgtctt ttagttctct tgcttcaatt tctttttcat aaatgtgcac gcttgtaaaa
    10801 gtatcttcac gaataattct ctcacttaca actatagcat cctcatagtt ataaccattc
    10861 caaggcataa aagcgattaa agcattttta cctatagcaa gttcgccttg atccatagaa
    10921 ggaccatctg cgataatttg tcctgctttt actatatcac cttttttaac aatagggtgt
    10981 tgaatataat ttgtattttg attggttctt aaatttttct ccatagtgta atggtcaata
    11041 aatggacctt tatcatcttc acctaaaatg aaaatgcttt tattatccac tttctcaacc
    11101 acaccgccac gctttgcttt aacagcttcc caagcatcac gcgcaataat ttgttccata
    11161 cctgttccta ctatcggagc tgaagcagta agaagtggca cagcttgacg ttgcatgttt
    11221 gaacccatta gcgctctgtt tgcatcatcg tgctctaaaa acggaatcaa agaagctgca
    11281 actccaacaa ccatacctga gcaaagatcg attaattgca cttcttcgcg tcttgcaagt
    11341 atagtttcac catcttgcct agtctcaaca aattcttcta ctatattgcc tttggcatca
    11401 accttagttg aagctggtgc gataaacaag ccttcttctt gtgtcgctgt aagataaaca
    11461 acttcattag tcactttacc atttacaact tttctatatg gcgcttcaac aaagccaagt
    11521 tcatttactt ttgcataagt agaaagagtg ttaatcaaac caatattttg accttcaggt
    11581 gtttcaactg gacaaattct accataatgt gtcgcgtgaa catcacgcac ttcaaaacct
    11641 gctctttctt ttacaagtcc accttcacca agcgctgaca aacgacgctt atgagtaacc
    11701 tcgcttaaag ggttggtttg atccataaat tgcgaaagtt gacctcctgt aaaaaattca
    11761 atgatagttg tagtaatcat tttaggattg attaaatcat aaggcattac tttatcaaga
    11821 tccgcattta aagaagtaaa tttatctctg atcgcctttt gcatttttgc aagacctaaa
    11881 tgaagttcat tggctaaaag ttcacctata gaacggatac gacgatttcc taaatgatct
    11941 ctatcatcaa tatgtccttt accatttttt actttaatta aatattttgc agttttaata
    12001 atatcttcat tagtcaaaac agtaacatac tcaggtactt caagacctaa tttatggttc
    12061 attttcatac gacccacctt ggtaagatcg tatctttcag gattgaagaa taaatcattt
    12121 acaaaagcct tcgctgcatc ttttaccaca ggttcacctg ggcgcataac tttgtaaatt
    12181 ctaatcgcag ctaaatcatt ttcatcatcg atattttcac tttgtttaag aagttttaga
    12241 gtttctccat cttgagcaaa ggagttaata atcgctgcat caacgccatt agccaagtca
    12301 tttgctatat caaaactttt ttgctcttta atcttagcaa gcttactctc atctaacaaa
    12361 gttaaagaat caaataaaac ctctccactt tctttatcaa taataggatt tgctaaataa
    12421 cgattaagta aaatttctac aggatattct atccatttta aaccgtcttt aataagctgt
    12481 tctgcttttt tctttgtaag tctttttcca gcttgatgaa cgatttttcc tttttcatct
    12541 ttaatatcat attctattct atccataaaa tcatttggat taaattctgt taaaaattta
    12601 tcttttttca catgtatagt ctgaatagga taaaacaact taataatatc ttgtttttta
    12661 taccctaaag ctctaaaaag catagttaca ggaacttttc tacgcttatt gattcttaca
    12721 tacaaaacat ctttggcatc gtattcaaaa taaagccacg aaccacgatc aggaataatt
    12781 tgtgctgtat aaacaagctt atttgcaacc gttgaacttt cttcttcttt aaaaataaca
    12841 ccagggcttc tatgtaattg atttacaacc accctctcaa ccccattaat gataaaagat
    12901 acacgatctg tcattaaagg aatttcgcgg atataaattt cttgttcttt aatatctttt
    12961 acgccaactt tttcccctgt tttttcatct ttttcatgca gagtaagacg gattttcatt
    13021 tttaaattta cagaataagt caaacctctt tccatgcatt cgcgaatggt atattttggc
    13081 ttgcctattt cactactaac atattcaaga ctcaatctat tttgcggatc atgaatagga
    13141 aaaattgatt taaaaacttt ttctatacca ctttcaccat tatcaagatt taaaaaataa
    13201 tcaaaactct ttttttgtaa ttgtagaaga tttgggattt ctatttgttt tgaaatgttt
    13261 gagaagtcta ctcttaaacg atttcctaat ttattatcta acatatcgca catacctcat
    13321 ggtaaatttt gtaaatttaa aaaagaagac ctaaaaatta ggtaaaaata aaaaaagaag
    13381 acttgccttg gcaaatcttc ttctaacttt aaagcttaaa attacttaag ttctacttta
    13441 gcaccagctt cttcaagttg ttttttagct tcctcagctt cagctttagc cacaccctct
    13501 tttagagttg aaggagtttg ctcaactgca tcttttgctt ctttaagacc aaggcctgta
    13561 agagcacgaa cgattttaat aacttcaatc tttttagcac cgccatcagt taaaacgata
    13621 tcaaattcag ttttttcttc agcagcagct gcagcaccac cagctgcagc accaccagct
    13681 atcattacag gagcagcaga cacaccaaat ttttcttcaa actcttttac aagttctgat
    13741 aactcaagaa cacttaaatt tgaaatatat tctaatacat cttctttaga gattgccatt
    13801 ttttatcctt ttatttaatt tattcagatt cttttttatt tttaagcgca tttaaaccta
    13861 ttgtgaaatt ggtaattggc gcattccaaa cttgcaaaag catagcaagc aactcattgc
    13921 gtgaaggcat tttagcaaga gctttaacct tagcaacatc tgcaacttcg ccttcaatat
    13981 gagctgtttt gatttcaaat ttatcgttat tttcttcaaa tttagcagct acttttgaaa
    14041 cacctagctg atcttcgccc caaagataaa tatttgtatc tttaagaact agacctgttt
    14101 taccggaatt gttaagagca atgttagcca aagtattttt aacaatttga acttttacat
    14161 tgttttctct tgcattattt ctaagctctt ctagtttttt tgtgctaaga cctctgtaat
    14221 tacaaactac aatagcttca ctagctttaa aaccttcttc aagtttagca ataatctcaa
    14281 ctttttcgct tctagtcaca ttttctcctt tccgattgag atttcaagta gagtggaaat
    14341 ccaattaagc ttacgcctcg actatcttca atctaaaata aacatctcaa aaaatcaaaa
    14401 attttttcaa atgtttattt taaaacaaaa gagttgcaaa aaagcaactc ttatttcata
    14461 tcaagcaatt cttgtgtttc aagctttaca gaagggctca ttgtcaaaga taaagccgca
    14521 tttttaatat atctaccttt agctgcagca ggtttatgtt tgttaattgc ctttacaaaa
    14581 gtgctaacat tgtcccataa ttgttctttg gaaaaactta ctttaccaag acctgcatgg
    14641 atatttcctt gcttatcaac acggaaattt acctgaccac tttttgcatt attaactgct
    14701 tgagcaacat ccatagtcac tgttccagtt ttaggatttg gcattaaacc ttttggccct
    14761 aaaattctac caactttacc aacaagtccc attaaatttg gagtagcaat caaaacatca
    14821 aaattcatat tacctttttg aatttcttct actaaatcat cgctacccac aatatctgca
    14881 ccagcatttt tcgcttcatc agcttttgcg tcttttgcaa ttacagcaac acgaactttt
    14941 ttacccgttc cagcaggtaa aacaacagat cctcttacca tttgatctgc atgtcttgga
    15001 tcaacattga gttttaaagc aatttctaca gtctcatcaa atttagcaga ctttaaagtc
    15061 tttattgtat caattgcatc gcttaaagca tactctttat ttgaatcaat tttttgtgat
    15121 aattctttta atctttttgc tatcttagcc atttattttc tccgcatttt aaagtgctac
    15181 cgccttttac cttggcggtg aaaggattaa tctacgattt caacacccat agaacgagct
    15241 gaacctgcaa taattttagc agcttgatct ctatctttag tatttaaatc tgcaattttc
    15301 ttatctacta tttctaaaac ttgagcacga gttaacttac ccaccttatt tttaagtgga
    15361 ttatccgtac ctttagaaat tccagctgct tttttgatca aatccgtagc tggcggttgt
    15421 tttgtaataa aagtaaaact tttatctgca taaacagtga taacaacagg gatattaaaa
    15481 cctgccatat cttttgttct ttcattaaaa gccttacaaa actccataat attaacacct
    15541 tgctgaccca aagcaggacc aacaggtggt gatgggtttg cttttgtggc agcaatttgc
    15601 aatttaattt cgcctacgac ttttttagcc ataacaaatc tccttacttg atataaatta
    15661 aattattttc tcaacttgag aatataagat ctccactgga gttgaacgtc caaaaataga
    15721 aacatttaat tttaataaac cacgaaccat atcatactct tctacaattg cagtaaagtt
    15781 tgcaaatggc ccttctgtga ttctcacatt ttccccttct tcaaaagaaa tctttggttt
    15841 aggcgctgca cgattgtgaa ctttttccaa aatcaaatta atatcttttt ctgttaaagg
    15901 ggttggcttt ttggattctc caataaaacg accaaccttt ggaagagatt gaatgcgatg
    15961 ccaaagctct gtatttaaat caagaagtgc aaaaacgtat cctgaataca aacttctttc
    16021 gctaatcttc tcctttccat tcttaaattc aataacatct tcagttggaa caacaatttc
    16081 tttaagttgt tcttcaattc cgttatcttt tactaaattt tcaatggctc ttttaactgc
    16141 catttcactg ccagcataag tttgaattgc ataccattta tgagtactca tttactctcc
    16201 ttatacgatc gcagaaacaa tagaggacat aagccaatcc actaacgcca aaaacaaaga
    16261 aatcaccaca acaaccacaa aaactgtaat ataggcattt cttacctgtt cttttaaagg
    16321 aaaaattact ttccttaatt cggcttttga taatttaaaa taagttatta atttttccat
    16381 ttatttaaac cttaattatg gcagggcaag agggattcga acccccaacc atcggatttg
    16441 gaatccggcg ctctaccgtt ggagctattg ccctaagggc gcaagcttaa ctttttaact
    16501 taacttcttt gtgaagtgta tgttttttta atcttgggca atattttttt aattctaatt
    16561 tttcagtagt atttttacta tttttatagg tgctataatt aatatcacca cattcttcac
    16621 actttaaacc aactttaatt ctcatttcaa ttttccttaa aaaattaaag ccaagctttt
    16681 aacttggctt tattaaatta tttaataatt ttagaaacaa cacctgaacc aacagtttta
    16741 ccaccttcac gaatagcaaa acgagttcct tcttcaagtg ctactggagc gatcaagctt
    16801 acagtaattc tcacattttc acctggcata accatttcaa caccatcagc taatttaatc
    16861 gaacctgtaa catcagttgt tcttacataa aactgtggtc tatagttgtt aaagaatgga
    16921 gtatgtctac caccttcatc tttatttaag atataaactt cagcttcgaa gtcagtgtgt
    16981 ggagtaattg attttggttt agcaagaacc ataccacgga taacttcttc ttttttagta
    17041 ccacgaagaa gaacacctac attatctcct gcttcgcctt gatccatttc ttttctgaac
    17101 atttcaacac ctgttacagt tgttgtttga gtatctttaa taccaacgat ttcgatagta
    17161 tcacctactt ttacaacacc tttttcaatt ctacctgtaa caacagtacc acgacctgaa
    17221 attgagaaaa cgtcttcaat tggcatcaag aagtcttttt cagtatcacg agttggagtt
    17281 ggaatatagc tatcaactgc agccataaga tccataattt ttgctgacca ttcaccatct
    17341 tgtccagctt tagcttcttc aagagctttt aaagcagaac cagaaataat aggtgtatca
    17401 tcgcctggga aatcataaga gcttaataat tctctaattt ccatttcaac taactctaaa
    17461 agttcagcat catcaaccat atctgcttta ttcataaaaa caacaatata tggaacgcct
    17521 acttgacgag aaagaagaat gtgctctcta gtttgtggca tagggccatc tgcagcagaa
    17581 acaaccaaga tcgctccatc catttgtgca gcacctgtaa tcatgttttt aacataatct
    17641 gcgtgacctg ggcagtcaac gtgtgcatag tgacgattgt ctgtttcata ttcaatatga
    17701 gaagtagcaa tagtaatacc acgctctttt tcttctggag cattatcgat attatcataa
    17761 tctttaagct ctgctaaacc tcttctagaa agaacagcag aaatagcagc tgttaaagta
    17821 gttttaccat ggtcaacgtg accaatagta ccaatattta cgtgtggctt attacgtgaa
    17881 aatttttctt tagccatttt tttcctccgt ataaaaaata aattgagcaa agcaagtctt
    17941 atatctatat aattttttca attcatggag ctcatagcgg gaattgaacc cgcgacctct
    18001 cccttaccaa gggagtgctc tacctctgag ccatacgagc gctcagaaaa attatacaca
    18061 ataacagaca acaaaaactc ttaaatggga tatatactgt aagttaaagg ttttaaaata
    18121 cagctcccag ttcttttaaa ttattggagc gggaaacggg actcgaaccc gcgaccctca
    18181 gcttggaagg ctgatgctct agccaactga gctactcccg caaagcatgg tggtgagtcg
    18241 tggattcgaa ccacggaagg cgaaagccag cagatttaca gtctgccctc gttggccact
    18301 tgagtaactc accataaaaa tattgctttt tcaatattct ggtcaaacac tgctaaaata
    18361 aatggagctg gttaagggac ttgaaccccc gacctgctgc ttacaaggca gctgctctac
    18421 caactgagct aaaccagcaa aaataaaagt aagattataa ctcaaaaaaa aaattttgtc
    18481 aagacttttt tagttttt
//
LOCUS       DARGED010000020        18003 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.020, whole genome shotgun sequence.
ACCESSION   DARGED010000020 DARGED010000000
VERSION     DARGED010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18003
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.020"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..226)
                     /locus_tag="SFZ84_000564"
     CDS             complement(<1..226)
                     /locus_tag="SFZ84_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG8202708.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQ"
     gene            complement(223..471)
                     /locus_tag="SFZ84_000565"
     CDS             complement(223..471)
                     /locus_tag="SFZ84_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8202709.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(550..723)
                     /gene="tatA2"
                     /locus_tag="SFZ84_000566"
     CDS             complement(550..723)
                     /gene="tatA2"
                     /locus_tag="SFZ84_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG8202710.1"
                     /translation="MVFLISLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(733..1071)
                     /locus_tag="SFZ84_000567"
     CDS             complement(733..1071)
                     /locus_tag="SFZ84_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG8202711.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(1064..1978)
                     /locus_tag="SFZ84_000568"
     CDS             complement(1064..1978)
                     /locus_tag="SFZ84_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG8202712.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(1983..2507)
                     /locus_tag="SFZ84_000569"
     CDS             complement(1983..2507)
                     /locus_tag="SFZ84_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG8202713.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(2504..3286)
                     /gene="napH"
                     /locus_tag="SFZ84_000570"
     CDS             complement(2504..3286)
                     /gene="napH"
                     /locus_tag="SFZ84_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG8202714.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(3283..4023)
                     /gene="napG"
                     /locus_tag="SFZ84_000571"
     CDS             complement(3283..4023)
                     /gene="napG"
                     /locus_tag="SFZ84_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG8202715.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(4041..6815)
                     /gene="napA"
                     /locus_tag="SFZ84_000572"
     CDS             complement(4041..6815)
                     /gene="napA"
                     /locus_tag="SFZ84_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG8202716.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEALDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(7062..7589)
                     /gene="tpx"
                     /locus_tag="SFZ84_000573"
     CDS             complement(7062..7589)
                     /gene="tpx"
                     /locus_tag="SFZ84_000573"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG8202717.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(7689..8429)
                     /gene="peb2"
                     /locus_tag="SFZ84_000574"
     CDS             complement(7689..8429)
                     /gene="peb2"
                     /locus_tag="SFZ84_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG8202718.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(8470..10500)
                     /locus_tag="SFZ84_000575"
     CDS             complement(8470..10500)
                     /locus_tag="SFZ84_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG8202719.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            10629..11651
                     /locus_tag="SFZ84_000576"
     CDS             10629..11651
                     /locus_tag="SFZ84_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202720.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNTSIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKGKLKQENKQAKIEALKKEISKQQKILERE
                     RAVKKELQSNKSNKNKYLNTAREYLNIGKNSRLEPELSTENMKVYVLDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            11674..14286
                     /locus_tag="SFZ84_000577"
     CDS             11674..14286
                     /locus_tag="SFZ84_000577"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG8202721.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYVKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVGIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIMMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            14291..15301
                     /locus_tag="SFZ84_000578"
     CDS             14291..15301
                     /locus_tag="SFZ84_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG8202722.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            15298..16209
                     /locus_tag="SFZ84_000579"
     CDS             15298..16209
                     /locus_tag="SFZ84_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8202723.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     KNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            16401..17174
                     /locus_tag="SFZ84_000580"
     CDS             16401..17174
                     /locus_tag="SFZ84_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8202724.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKKGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            17223..17993
                     /locus_tag="SFZ84_000581"
     CDS             17223..17993
                     /locus_tag="SFZ84_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8202725.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEGKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
BASE COUNT         6416 a         3102 c         2463 g         6022 t
ORIGIN      
        1 tttgtatttt ttgctcttct tcaaattttg ccatagaaat tttatcttct aagtcttgcg
       61 gagtatcaag ctcttcgcat acaaactcca taggtggtaa ttcatctttt atttcagttt
      121 ttctatttaa ttcttgttct tttaaaattt cattttgtct tctttgctct tccatgatag
      181 agctaacttc gctaatggtt tttttagcta aatcttccaa attcatattt ttatcaacca
      241 ccttttaaat tcattaattt cttcatcgct tttcatatta ataaaaaaat ccaacatttg
      301 agtgtttaag tctttatgct tggatctaaa accactaaga cgacgaaccg catcgatagc
      361 gttttgatta tccggatctt cttttaagat atttttataa atttctaaag cttcgtcttt
      421 taacccttga gcctcataga tggaagcttc agtgactgta tttttcatca ctgtttccta
      481 aaatttttct ttaattctag caaaaagctt tttaatttat ctttaagaaa ataagatgtt
      541 ttttaatgtc tattttgttt taaacagttt ttctatatat tctttttttt ctttctctaa
      601 actagaattt aattcttttt gttctttttt aacttgcgct tttaaatctt gatttttaaa
      661 atacacataa tcaattccaa aaataacacc aattataata agcaatgaga ttaaaaatac
      721 catctttaca ctttaagaaa attgattaaa tacactacca tagtagcgaa cattctcagc
      781 attttcattt ttttctatcg tttctattgc accactattg attgcttttt ggatatcatc
      841 atttaaatct tgataagaaa aaaccatatt aatactgata atatttggca atttctcaag
      901 cattttataa gagtttaact catcttctaa attttcactt tcaatcacaa ctataatctt
      961 ttcattttca caaagttcta cagaacaaaa aggaatttca gatatagcct tttttaaatc
     1021 atttatatat tcttcttttg ctaaaatcaa aacactagaa agattattca tcaatactcc
     1081 taaacattat actatcacca aagcctgaaa cgataaaatc tttattgttt aaaaaaataa
     1141 taaactcact catcaaattt tcattattaa aagttttaac aggcttaaaa tcacttgtgc
     1201 taaaaacttc actaactcca gcttcattat cgctataaac agcgaattct ccactaggac
     1261 ttaaagcaca agtatatatc aaaaaatctt tttgcaaaaa attttgctct tcatttttta
     1321 caactcctat acgcctatcc gttccacaac ttaaaataac attattttta aaatctactt
     1381 gatagatatt atctttatgc attttatcat agttttttaa catcttccaa tttttcaaat
     1441 caaaaagttc tacttcgcca ctctcaaaac ctgcaactag tctactctta tcttcattta
     1501 aaactgcatc attaagacta gaatgggaaa aattaaattt ttttatattt tttaaacttt
     1561 tatcaatcaa ttctatttca gaaccaatag aaatcaaaag ataagtgttt tcattgataa
     1621 aaaatgcttt tattatgcta ttttcttcga gctttttgat ttgtaaattt tccttataaa
     1681 aacttaaatt tttagcacca aaatcaccct cgctaagtat taaaagtgta tgtttaaaaa
     1741 catcaatgtt ataaatctta gcaaaatcat caccataata atttttaatc tttggtaaag
     1801 ataaaagttc ttttaaactt ttatctttaa tgttatattg taaaatttca cctttatcag
     1861 tgcctatata taagttttgc ttatcaagct ttaaagctgt tatattagca tttaatttca
     1921 gctcataagc ataagacaaa acacaaaaaa gactcaaaat aaaaagaaat tttttcattt
     1981 atttacttta caccctcatt aatcacatca attaaatttg aacgactttt taattgttca
     2041 tttttaaatt caggtttaaa gctatttccc actaaaggtt ttgcatcact ttgtggaaca
     2101 tgacactgag tgcaattaaa acgactatca ctaatcatat ctcctgtggt tttattgtgt
     2161 ctaaaatcat aataatgact agcaggaagt ggagttgcac cagcatctgc tgctatagcc
     2221 ttatcatggc agcttaagca catattgtta tctttagtta taggtaacaa atcttcaata
     2281 gcatgcggaa ttaatggtgg tgcattttca taagaacgct caaaacgagt agattcccca
     2341 ggttgtaaag ttgtgaaatt tgcttccact aaatttactt tattttcatt ttctaaactt
     2401 gcttttctaa gtccaatttg ttccgaactt accccactat tcattgcaca agcggcaaaa
     2461 aataccactg cagcacttcc taataaaacc aatttcttct tcattattta ttccttaaat
     2521 caaaaatatt aaaattcaaa gcatcatcat tacaaacttc tatacatctt gcacacctta
     2581 tacactctcc tgatttcacg ctagtacttt cttttccaac catccacaaa acctgttttt
     2641 caggacaaat acggatacat tcataacatt tagtgcattt atcactatca tgctttattt
     2701 taagcaaagc aaaacgagaa ataaaagcat aaaaagctcc tagtggacaa aaatgtgaac
     2761 aaattgccct aggacttaaa aaagtatcga tacaaaaaag tataaaggct acaaaaatcc
     2821 aagaacttgt agcaaaaata atccctctat gtatcattcc tatataagaa aaactttcaa
     2881 acacaggcaa tgaaaataca aaagaaagga ctaaaaccaa gaccaataca aaatagcgta
     2941 aatttttagg caaaattaaa aatttattat taagggttaa tttatttcgc acaaaagcag
     3001 caaaatctgt gattaaatta acaggacaaa cccaagagca aaaaaccctt cctaaaagca
     3061 aaccatagat aaaaaatata atcaaagctc ctattaaagc cactaaatct atactccagc
     3121 ttgctagaat gatttgcaaa accgcaaaag gatcgcttaa aggtatggta ttaaaaagtc
     3181 tagaagaact taaatttccc tgcaagataa aatctgtagc tttaaaacta aaaagcgcta
     3241 aaattccaag ctgaacgatg cgtctagcaa ttaaatactt catcacagtt ctccatcatt
     3301 taaataattg gttgcttttt tagcatcaaa atgttttgaa gtatctgcat tttttatacg
     3361 accttcatct ttttcatccc agccttttac ataatgagat cctgcttttc ccaatacata
     3421 ctcccttggc aaaacacgaa tggccggttt ttcagtaata caagccagtt cacaaagccc
     3481 acaacctaca cacacttcat gatccacact aggtagtaaa aaagcatgtt tggcggtgcg
     3541 ttcattgcgt ttaagctcaa gttttaaagc cctatctatc aaaggacaag ctctataaca
     3601 agcatcacat tgaattcccc agtgtgccac acaagaagca ctatcaacaa tagcaatacc
     3661 cattttcaaa gattctatac cctgctctaa atgcttttta tctaaagcat cagttggaca
     3721 ttctctaatg caaggaatat ccttacaaag atagcaagga atttctcttg ccttaaaaaa
     3781 aggcgtgcca ttttttggac tatctaacaa gctagcaagc tttaaagtat cataaggaca
     3841 ggcttttaca caaagcccac aacgaataca tttgcttaaa aatctagctt catcttcagc
     3901 cccaggagga cgcaaagcat aattatcatc ggcttttaaa gccaaattag ccaaaaatcc
     3961 acctcctgta cataaacatg cagccttaaa ggcactaacg aaaaattctc ttctaccttt
     4021 catttaatca aaaccctaaa ttaagcctta taaattttta cagcacattt tttaaagtca
     4081 gtttgttttg aaagcggaca agtcgcatcc aaagtaactt tattgatata tacattctca
     4141 tcaaaccacg gcacatacac aagtcctaca ggcggtttgt ttcttccacg catatctact
     4201 cttgctttta ctttaccacg acgagattcc acccaaacca aatcaccttg atttaagcct
     4261 aatttctctc catctttctc actcatatag caaagtgctt caggcacagc acggtaaagc
     4321 tcaggcacac gcatagtcat agttccacta tgccaatgct ctaaaaccct tcctgttgca
     4381 agccagaacg gatactcttt acttggtctt tcaggtgctt tcataaatgg cctaaagaaa
     4441 attttagcct tatttttaat actgtgctct ttttcatctt taggagctat taaatcccca
     4501 tttgtaagca ttttgttaaa atcaccataa aaagcaaaat ctgaatttgg agccgctttt
     4561 ttagcataat aatcaaattt agtattaaat ctccactgtg tttccttgcc attaaccaca
     4621 ggccatctta aaccccttac tttatgatag gtatcaaaat ccgctaaatc atgtccgtgt
     4681 cctaagccaa atttacgata ttcttcccaa agatattttt gaacgaaaaa gccatagcct
     4741 gtaaattctt ttccatcact gccttgaatt tttctctcat cacctttaac atcggtatta
     4801 tcaaagcctt ttgcgatggc atcgtttgga ttaaagcttt ttgcttcttt attggcaaat
     4861 agtacatcaa aaagtgtatc atcttcgcta taacccatag ctttcgcctc ttctaaaaca
     4921 cttggcaagg taagcttatt atccactttt tgctctttcc aaacttcttt aagcttaaag
     4981 cgttttgcaa attctaaaat ttgccaagta tcactcatgg cagcacctac aggtaagact
     5041 tgttgtttcc aatgttgagt tcttctttca gcattaccat aagcacccca tttttcataa
     5101 atcatagcgc ttggtaaaat aagatcagct acttttgctg aaattccagg ataacaatca
     5161 cttacaacaa taaaattatc catttctctt gctgctgcaa tccagtgatt tgcatttgca
     5221 gtgttttgcc atggattatt cacttgcacc catgcaaatt taatttttcc atcttctaaa
     5281 tctctcatga tattaagata aggagaacct ggttttgggt tgatagtctt tgcaggaact
     5341 ttccaaattt tttcagaaat ttctctgtgt tttggattgg ctacaaccat atctgcaggc
     5401 aaacgatgtg agaaagttcc tacctcccta gctgttccac aggcacttgg ctgtcctgtt
     5461 aaagaaaagg ctccactacc tggtttagct tgctttccta gcaaaaaatg taccatataa
     5521 gcttgttcat ttacccaaga acctcttgtg tgttgattaa agcccatagt ccaaaaactt
     5581 acgactttgc gatttttctc tatgtaaaga ttagctaatt cttgaagttt tttcttaaaa
     5641 tcttccaaag actcattatc atcacctttg gctactcttg cagtgtattc taaagtataa
     5701 ggggctaaac cttttttaaa ttcgtcaaaa gaaatttccc agtttttatc agccacacct
     5761 tgatgtttca tttcaaattt atcacccgct ttaacgccaa gataagataa agaagtagcc
     5821 tcttcatcgt ctaaagtgat tacattttct ttttcaaccg tatctttttc actttcttta
     5881 aattttggat gatttggatt atttctcata ccataaccaa tatcagcata accagttgca
     5941 aatacgcagt gatctttgat aaatttcata tccagagcct ctggatgatt ataaacaatc
     6001 tctcttgcta tgtagttcca aatagccaaa tctgtatttg gtttaaaaat aatttcaata
     6061 tcagcaatat ttgaagtacg gttagaaaaa gtgcttagat tcacaacttt aaccttatca
     6121 agattgctta gttttctatc acttactctt gaccaaagga ttgggtgcat ttcagccata
     6181 ttagctcccc aagtgataat agtatctgta agctctatat catcataaca gcctgatggc
     6241 tcatctacac caaaagtttg cataaaacca accactgcag aggccataca atgtcttgca
     6301 tttggatcga tattatttgt tctaaaaccc gcttttgcaa gctttaaagc agcataacct
     6361 tcttggatag tgtattgccc actaccaaaa atccctatac ctgtaacgcc gagttcattg
     6421 taggcttttt taaattgttt ttccatttca tcaaaggctc tttgccaaga aacttgttga
     6481 aatttgcctt ttttatcaaa ttcgcctttt tcattcatgc gaagcaaagg cataacaaga
     6541 cgatcttcac catacatgat cttagcatta aaataacctt tgatacaatt aagtccgcga
     6601 tttacgggtg ctgcaggatc accttttgtt gctacgattt tgccatcttt tctagctatc
     6661 ataattccac agccagttcc acaaaatcta caaacagctt tatcccattt ccaatcttct
     6721 tcttgcgcgc caagcataga gcttggaaca ctaagccctg caacactagc agcacttgca
     6781 atagcggtat ttttaataaa atcccttcta ttcatcctta ttcctccaaa ataaaaaaat
     6841 catcttatta taaaaaatga agtataaaaa tctcttgaaa ttttaataaa aataataatt
     6901 ttaaagctct attttatagg agttttattg tcctttttat attattatta cacaaaataa
     6961 atattaaaaa taatcaactt aacaattaaa atataatcaa cttaaaataa taaaaaaatg
     7021 aagatataaa aattaagccc taagaatggg cttaatcaaa attaatggca accacaacca
     7081 ccgcagcagc tagagccacc aaaaaatgca tcaagttttg caatatctgg catttctgtg
     7141 atttcattta caagttcttt atatgccact ttaccctctt taatcacaaa tacggcacga
     7201 gctaaaagcc cttctaaagc accttcattt atcaaaacac catatttttc accaaattct
     7261 tttgccacaa aatcacttgc aacacttaaa ttttcaatac cttctgtact gcaaaatctt
     7321 cccatagcaa aaggtaagtc catacttact acaatcactt cagcaccatt gtaactggct
     7381 acttttttat taaattctct agcctctgta gcacaaactg gtgtatctaa gcttggaaca
     7441 cttaaaatga tttgagtttt acccgctgca ccgatttcaa tcacgcttaa atctttagct
     7501 ttaagattta ccttaggagc atctgctcca acttctactg aatttccttt aagttttaca
     7561 ggatttcctt taaaatttac tgtactcatt taatttcctt tttttgatat tttaaacatt
     7621 attgcaatta atgttttagg agtgattata tcctataaat attaattatt ttttaatttc
     7681 actcaaaatt attttacttc tttccaagta tattttttcc acactttttg agcttcctta
     7741 ctcttaataa aatctacaaa ttctaaagct tttttatttt ctaaaccttt ttttgtagga
     7801 gcaatttcag ctgcacgata aatcactgca tttttatctt tgataaataa agctttatca
     7861 tcgcctaaag cctttgccca atgagaccaa atgattaaag catcaatatt tggattgtta
     7921 ttccactcat ctacagcagc tttggaattt ttagcataaa tttttatatt tttacgtaat
     7981 tttaccaaat tttctctttt tgcacttttt aaagccatat cttcataaag tccaacttgt
     8041 cctgcaccat caaccaccat aacatttatg ccatctttta aaatgtcttc aaaattttta
     8101 atattttttg gattatttgg acgcacgata atacctgatg gacgcacatt taaaacgctt
     8161 aaattttcta aacttaaact tggaattttt ttagcaaaat catccatcat tgaagtattg
     8221 cctgaaaaaa tcaaatctgc attttctttt gctttgtcta tccaagctgg agttggacct
     8281 gcggttacaa tcaccttttc ttttgttttt tcttcaaatt ttaaagcaag ctcttttagc
     8341 acaggagcgg gaccacctgg accataaact aaaatttcag catttaaaaa acttgctgct
     8401 gctaaactta aaattaatat ttttttcata aaataaacct ttctttataa taatataaag
     8461 gaaattttat caatctatag ttaactctcc cttgcaaagc cctgcttcta taagaaaacg
     8521 agaaggagcg aaagaagttt ttttattttt atcatattta gcatagctta aataaagtat
     8581 attttttgcc ctagttactg caacataaaa aagccttctt tcttcttcta agcttccacc
     8641 cattcccata agcttttgat taggaaagcg accttgcgca agatcaatca caaaaacaag
     8701 atcaaattcc aagcccttgc ttgcatgtac gctaagcaaa ttaactcctt tgccactact
     8761 catttcactt gcacctaaag ttagaaaatt ataatactta taaatatcgc tataattttt
     8821 tgtaagctct tttaagacat tgaattttgt ttctattttt tctaaatttt cactctttct
     8881 taataaatcc acctgtcctg ctttatttgt tgctcttttg gttgcaagtt cttcacaaat
     8941 ttctctataa aaagaatttt cacaaattaa atttaccaaa gtcaaagaat gttttatttc
     9001 catagctttt tttaaaaaaa gataaatttt ttctaaattt ctagcacata aatcattgat
     9061 ttttgaaagt tttaaaatag gatgtgcatc aaattcactc tcaaatttaa aacgagtttc
     9121 gctggctaat tcttctaaat ccgcaaaaag cccaagttga taatttcttt tttgatgatt
     9181 ttgcaaattt acatttttat caggatctaa aaaacctttt attaaatttc catgccctaa
     9241 ttttaaaagt gcgtcaaaaa tttcttttgc taaaactcca cccacacctt tggtatattg
     9301 aaccaaatga ataaaagcca tgatatcttt aggatttacc acaagagcaa gcatagagct
     9361 aaaagcttta acttctaaac tttcaaaaaa acttccactt ccctttctca cacttgcaat
     9421 gccctgctcc cttaaagcta cttcaacccc atcagcactt gagttgttgc gaaaaatcac
     9481 ggcaatttct tccaaactta ctccgcttgt aagtatcatt ttggctatat tttgatactg
     9541 atcaaataat tcttcaaaag taagcaaaga tggggcttta aactcatcat ttcttgtaac
     9601 aataagttct tttggatata atctttcgtt atttaaaatc actttattag ccaaagctaa
     9661 aatacttctt gatgaacggt agtttttatt taaagaaaaa atttttgcat ctttaaaacg
     9721 atctttaaac ccacctatga tattaatatc cgctccatta aaagcataaa tactttgatc
     9781 ataatcccct acgcaaaaca aacttttact atgaaaagcc tctattaagg aactttgcaa
     9841 agtatttgtg tcttgatatt catctactaa aatttcatca aattcatatt tttcttcttt
     9901 taaaagatct tttagattga taagcaagtc attaaaatct acataattaa aacgcttttt
     9961 ttcattatca tattctttta aaatatcttc ataaatttca gcataaatac tttgatcttc
    10021 gtagttttgg caaaaccaag tataaaaatc ttgattgtgc gctttgtttt gaaacaaaga
    10081 ataaagatca tataaataac ttgattgata aggttttata tcacttaaat gcctaaaagt
    10141 tcttttttca tagacacttt taagtagagt ttttaactcg cttgcttgct ttaaggctat
    10201 atttttatcc gcatttctaa gtaaggtata agccgtacta tgaaaagttc ctgcaagtat
    10261 tttactggta atatttttat caaaaaattt ccctaaacgc cctatcattt ctttactggc
    10321 tttatttgtg aaagttaaaa gcatgatttt ttgaggtgcc actcccttgc ttaaaagata
    10381 agaaattctt gcaacaatag tagaagtttt tcccgtccct gcacttgcaa taacaagatt
    10441 gtgtccaaaa tcagcagtag cagcaagata ttgttcatta tttaattttg aaagtggcat
    10501 tattttcctt ataaaagtta aaattataaa aaaaaattac ttaaaaatat aaaaatttaa
    10561 aattacttta tattagatta tagtacaatg ctaaaattat ttaactttct gtttttaagg
    10621 gatagcaaat gaatttgaaa attttttcta ttattgttgg catattaatt gctgttattg
    10681 tgatattagg tggaacatat tattatcttt ttgaatattc aaaaccaaag aattacacct
    10741 taaataccaa cacttacacc gaacaaaaat cgtataccaa taactacgat aattcctatt
    10801 caccctcgat ccaaaccaac aatagttcat caaatgtaaa tactaataac aataccatcc
    10861 aaaagcaaga aacaaaccca ttattagacg aaaatcaaag cttaaataac gatacattta
    10921 atacatcaat aagcgaaaac aatcaaagct taaataatga caccaataca agtaataata
    10981 ttaatacaaa tgaaaataag caaattttag atacggataa aggaaaatta aaacaagaaa
    11041 ataaacaagc caaaatagaa gctcttaaaa aagaaatcag taaacaacaa aagatcttag
    11101 aaagagaaag agctgtaaaa aaagaacttc aatcaaacaa atcaaacaaa aataaatatc
    11161 taaataccgc tagagagtat ctaaacatag gaaaaaacag tcgtttagaa cctgagctta
    11221 gcacagaaaa tatgaaagtt tatgttttag atggaaaatt tttaagccaa tacagaatca
    11281 atctgttaaa agatatgcta agcattatac aagataatgc aaaagattat tatctaagta
    11341 tttttgttaa aatgctacca aaaggggaaa tgaaattaac tatctataac aaagaaatta
    11401 tcttttcaga tatgaaaaaa gcttataaat atattagttt agatagatta agcccatatt
    11461 taaacaatcc aaaagaatta aatgaacatg tagcacgtga agaaatttta gaaagactta
    11521 aacttcaaat taaaaaagat ggcaaaggaa gtgatttttc taaacatatc aaaagtttga
    11581 aaactggact taatacagca caatatttct tcccgttttg tgaaattata gaaattagct
    11641 ctattaaata agctaaaaca ataaaggcaa ataatgtatg ataaaaattt agaaaaagag
    11701 tattatcaaa tttgcgaaga acgcggatat tttgaaatcg atggcaataa aaccatacaa
    11761 gaaaaagata aaaatttctg cattatgatg cctcctccta atgtcactgg agttttacac
    11821 ataggacatg ctttaacttt tactctacaa gatattatga cgcgttataa aagaatggat
    11881 ggctataagg ttctttatca accagggctt gatcacgcag gtattgccac tcaaaatgtt
    11941 gtagaaaaac aactccttgc tcaaggcatt aaaaaagaag aactaggtag agaggaattt
    12001 atagaaaaag tctgggagtg gaaagagcaa agcggtggaa aaattttaga ccaaatgaga
    12061 acactaggca tcactcctgc atggagtcgc ttgcgtttta ctatggatga aggtttggtt
    12121 aatgccgtaa aaaaagcctt tgtagaactt tatgataaaa gacttattgt acgtggaaac
    12181 tacatgataa attggtgtac tcatgatggc gctttaagtg atatagaagt tgaatacaaa
    12241 gaaaacaaag gaaaacttta tcatattaaa tactttttaa aagatagcga tgaattttta
    12301 gtagtagcca caacgcgtcc tgaaactttt tttggcgata ctgcagttat ggtgcatcct
    12361 gatgatgaac gctatgctaa atttgtggac aaagaagtga ttttgcctat aagcaaaaaa
    12421 gccattaaaa tcatagccga tgaacatgta gaaaaagaat ttggaacagg agttgtaaaa
    12481 gttactcccg ctcatgacat gaacgattat gaagtaggac ttagacataa tttagatttt
    12541 ataagtgttt ttgatgaaaa aggaatttta aacgaacatt gtttagagtt tcaaggttta
    12601 gaacgcttag aagcaagaga aaaaatcgta gccaaacttg aaagtcttgg ttttatagaa
    12661 aaaatagaag agtataacaa tcaaatagga tattgttatc gttgcaacaa tatagttgaa
    12721 ccttatatct ccaaacaatg gtttgtaaaa aaagaaatcg cccaagaaag tatagaaaaa
    12781 gttgcgcttg gagaaagtaa attttaccca aatcactgga taaatagctt taatgcttgg
    12841 atgaaagatt taagagattg gtgtatttca agacaacttt ggtgggggca tcaaattcct
    12901 gtgtattatt gcgaatgctc tcatgaatgg gcaagccaac atacgcctaa aacttgtcca
    12961 aaatgtcaaa gtcaaaattt caaacaagat gaagatgtgc ttgatacttg gttttcttca
    13021 ggactttggg ctatgagtac tctaggctgg ggaaatgaaa attggggtaa agataaaatt
    13081 tggtctgaaa aggatttaaa agatttttat cccaattctt tactcattac aggttttgat
    13141 attttatttt tctgggtggc tagaatgatg tttcaaagca ctaatgcctt acatcaactt
    13201 ccttttaaag atatttattt acatgctctt gtgaaagatg agcaaggtag aaaaatgagt
    13261 aaaagccttg gaaatgttat cgacccaaat gaaagcatta aagaatatag tgctgatatt
    13321 ttacgcttta ctttagcact tcttgctata caaggacgcg atattaaact tagcaatgat
    13381 aaacttttac aagttagaaa ttttacaaat aaaatttata atgctacaaa ttatctgctt
    13441 ttaaatgaaa gtaaatttga agatttggaa aatatcacgc ttcattcaga attagcaaaa
    13501 tatatttatg tcaaatttca aacttgtgtt aaggatgtaa gagaaaattt agacaattat
    13561 cgctttaatg atgcagccaa tactctatat aaattctttt gggatgattt ttgcgattgg
    13621 ggtatagagc ttagcaaagc cgaaaaatca agcgttaaag aacttggtag tattttcaaa
    13681 gaagctttaa aacttttaaa tcctttcatg ccttttatca gcgagtattt ataccacaaa
    13741 ctaagcgata cagaacttaa aacaagccct tctattatga taagcaaata tccaaaattt
    13801 aaagaacaag ataaaaatat agaaaaaatc ttttctttgc tcatagaaag catagttggt
    13861 atccgccgtg ctaaaagttt aatcgatctt ggaaattcta aaatagaaaa agcttatatc
    13921 aaatttaacg ataaaaaaat caaagatgaa atcaaagctt atatgaattt tatcatgatg
    13981 ctcgcaaagt gcgagcaaat agaatttagt gaagaaaaat taccaaaggc aatatgtgat
    14041 gttagcgaga atttagaaat ttttattacg cttgaaaatg ttgatttaag tggtatttta
    14101 acaagacttg aaaatcaaaa aaataagctt gaaaaagaaa gtttcaagct taactccatg
    14161 ctttcaaatg aaaaattcat cgctaacgca cctaaagagg tggtggagca aaataaagaa
    14221 gctctagaaa atttaaaaat tcaacttgaa aaaatatcag ttgaacttca aaatctaaga
    14281 ggttaaaaat ttgataaaaa taaaaaattt aaaaaaatat tatggcaagg aactcgtgat
    14341 aaacgatgtt tctttggaga ttaaaaaggg tgaaatttac gccatagtag gtcatagtgg
    14401 agctggaaaa tccactcttt taagatgtat taatggactt gagaattatc aagaaggaag
    14461 tttaaaagtc tttgatcaag aaattaaaga tttaagtcaa aaaaaatcaa aagagttaag
    14521 aatgcttaga aaagatatag ggatgatttt tcaaaatttt gccctaatgg agcgcaaaaa
    14581 tgtatttgaa aatgttgcta tgcctttaag aacacactat actcagtgta aatttcatgc
    14641 caagcttttt aataaagaat acatgagcga aaaagaaatt gcccaaaaag tcaattcctt
    14701 acttgaaatc gtagggcttg atcataaaaa caaatcctac ccaagagaac tgagcggagg
    14761 gcaaaaacaa cgcgttgcta ttgctagagc cttagcttta aacccaaaaa ttttacttag
    14821 tgacgaagct acttcggctc ttgatccaaa cactacaaaa aatattttag agcttatatc
    14881 taaaatcaat gctgaatttg ggattactgt tgttttagta actcacgaaa tggatgtggt
    14941 aaaagacata gctcaaaaag ctttattact tgaacatgga caaatcatag gaagtggagc
    15001 aattgatgag ctttttttaa ggcctaatgc caaaatgaaa gaatttttag gagaaagcga
    15061 cttcttgcct gagcacggac ttaatatcaa actttacttt ccaaaagaag ttgcccaaaa
    15121 tagcgtcatc actcatatgg caagaactct aaatatagac tttaacatag tttggggtaa
    15181 aatagaaaaa ctgaatggaa aagccttggg aaatttagtt ataaatataa atgaaaagga
    15241 taaagacaag gttcttgatt acatagaaaa aagtggagta ttatgggagg tggcatcatg
    15301 aatgaagaaa acatctctat catcagtgct ttttttagta gaatttctca attttttaat
    15361 gaattttctt ggcaggatat taaagaagtg agtttaagtt ctattacaag tttcagtgaa
    15421 aattatgaaa acattttaaa acctgcactt aatgaaacaa tttatatgag tttaatggct
    15481 gtactatttg gatttttatt ggctatcatt cctggaattt tgcttgctat ttgggataaa
    15541 aatggaatta aagaaaataa aatcgcttat agtattttag attttattac aaatatactg
    15601 cgtgcctttc catttttaat tcttatagtt gttcttttac cactttctaa aatcatagta
    15661 ggcacaagca taggtacaaa tgctgccata gttcctttag ctatcggaat agctccttat
    15721 ttggcaaaga tgcttgaaag cgcttttaaa gaaatagaca aaggaatcat agaagcagca
    15781 aaaagttatg gtgctagcaa tattcaaatt attttcaagg ttatctttag tgaagctctt
    15841 cctgctataa ttagcggaat taccctaact ttgatcttta ccattggttt ttctgctctt
    15901 gctggaactg tcggtggtgg aggtttggga gatgtcgcta ttcgctatgg ttatgaaaga
    15961 tttaacaaag aagttatgat tcaaactgta gttattttac ttatattagt tcagttagtt
    16021 caaattctag gtaatttatt ttatacttgg gctaaaaata gtaaaactac atatatcatt
    16081 gccactctat tgattttact tggagttagt atagttatca atataaaaaa tgatgaaaat
    16141 ttcttttggc aagtaattgt ttttatctta tttttgggaa gtttacttta taaaggtttc
    16201 aaaaaataag gagattatat ctccttttaa gataaatata agttttttta agtaaaattt
    16261 aaacaaaaaa ttaaaggaat taaaatgatg tatcagatgc gttaatctga ctatcaacaa
    16321 gtttttatat gcttcttcct gatagtcaga gtgaatttat taagattaaa gcaagcacaa
    16381 aatgactaaa aaggaaaaaa atgaaaatca aatctttatt tatagcaagt attttaacat
    16441 taagtcttaa tgcaaatgca ttagaaacca tcacagttgc agcaactccc gtccctcatg
    16501 ctgaaatcct agagcaagta aaacctgatt tagaaaaaca aggctataaa cttgaaatca
    16561 aagaatttac ggattatgtt ttacctaatc tagctgttga taacggagaa gccgatgcaa
    16621 attttttcca acatactcct tatttggaag aatttaataa aaacaaaggc accaaactta
    16681 tcaaagtagc tgccatacac atagaaccta tggctgttta ctccaaaaaa tacaaaagtc
    16741 tagatgatat taaaaaaggg gttaaaatcg ccattccaaa tgatccaacc aatgaaagta
    16801 gagctttaga tattattgca aaaaaaggtt tggtaaaatt taaagataag gctttaaaaa
    16861 cacctcttga tattatagac aatcctaaaa aaattaaatt tgtagaatta aagcccgcac
    16921 aacttccaag agctttagat gatgttgatt ttgctgtaat taattccaac tacgctctct
    16981 ctgcaaatct gaatcctgca aaagatagcg tatttatcga agataaagaa agcccgtatg
    17041 caaacattct tgttgtaaga gtgggacatg aaaacgatcc aaaaatcaaa gccttaatcc
    17101 aagctctaca aagtgataaa atcaaacaat ttatcataga aaaatacaac ggatctgttt
    17161 tacctgcttt ttaattttat cccttaccta gggacttttt tcttaagtac aaaggagttt
    17221 ttatgaattt atttaaaatt attatactcg cttgcattct aaatttatct agtctatttg
    17281 cacaaaacat tactatagga gccactccaa atccttttgg tagcttacta gaactaatga
    17341 aagatgattt taaaaacaaa gggtatgagc ttaaaatagt agaattttca gactatattt
    17401 tgcccaatcg tgcattagag gaaaaagaac ttgatgcaaa tttatatcaa cacaaacctt
    17461 ttttagaaga atacaaccta aaaaaaggtt caaatttaat tgcaacaacg cctgtactta
    17521 tagctccagt aggagtttat agtaaaaaaa tcaaaaattt agaaaatctt aaagaaggtg
    17581 ctagagttgc tatacctaat gatgcgacca atgaaagcag agctttagag cttttagaga
    17641 aagcaaaatt aatagagctt aacaaaaata ctctaaaaac cccattggac ataaacaaaa
    17701 atccaaaaaa acttaaattt atagaactta aagccgcaca acttccaaga gctttagatg
    17761 atgttgatat tgctataatt aattctaatt tcgcacttgg agccggtctg aatccaagta
    17821 aagatactat ttttagggaa gataaaaata gcccttatgt aaattatgtt gtggtacgct
    17881 cagaaggtaa aaatagcgaa aaaaccaaag taattgatga aattttaaga agcgataaat
    17941 ttaaagccat cattaatgaa cattataaag atatattaat cccagctttt taggagtata
    18001 ata
//
LOCUS       DARGED010000021        17867 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.021, whole genome shotgun sequence.
ACCESSION   DARGED010000021 DARGED010000000
VERSION     DARGED010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17867
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.021"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            64..906
                     /locus_tag="SFZ84_000582"
     CDS             64..906
                     /locus_tag="SFZ84_000582"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG8202726.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            908..1357
                     /locus_tag="SFZ84_000583"
     CDS             908..1357
                     /locus_tag="SFZ84_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG8202727.1"
                     /translation="MQVNIFCIQKSDEFKTWNEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            1369..1731
                     /gene="dksA"
                     /locus_tag="SFZ84_000584"
     CDS             1369..1731
                     /gene="dksA"
                     /locus_tag="SFZ84_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG8202728.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            1721..2707
                     /locus_tag="SFZ84_000585"
     CDS             1721..2707
                     /locus_tag="SFZ84_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202729.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            2704..3630
                     /locus_tag="SFZ84_000586"
     CDS             2704..3630
                     /locus_tag="SFZ84_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG8202730.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(3655..4344)
                     /locus_tag="SFZ84_000587"
     CDS             complement(3655..4344)
                     /locus_tag="SFZ84_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202731.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(4468..4875)
                     /gene="ybeY"
                     /locus_tag="SFZ84_000588"
     CDS             complement(4468..4875)
                     /gene="ybeY"
                     /locus_tag="SFZ84_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG8202732.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            complement(4872..5486)
                     /gene="recO"
                     /locus_tag="SFZ84_000589"
     CDS             complement(4872..5486)
                     /gene="recO"
                     /locus_tag="SFZ84_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG8202733.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(5486..6007)
                     /locus_tag="SFZ84_000590"
     CDS             complement(5486..6007)
                     /locus_tag="SFZ84_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG8202734.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(6012..6767)
                     /locus_tag="SFZ84_000591"
     CDS             complement(6012..6767)
                     /locus_tag="SFZ84_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEG8202735.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFTNLHTESFWLQKA"
     gene            complement(6764..7453)
                     /gene="pfs"
                     /locus_tag="SFZ84_000592"
     CDS             complement(6764..7453)
                     /gene="pfs"
                     /locus_tag="SFZ84_000592"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG8202736.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(7450..8370)
                     /gene="fabD"
                     /locus_tag="SFZ84_000593"
     CDS             complement(7450..8370)
                     /gene="fabD"
                     /locus_tag="SFZ84_000593"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG8202737.1"
                     /translation="MKTAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVLSNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            complement(8370..8939)
                     /locus_tag="SFZ84_000594"
     CDS             complement(8370..8939)
                     /locus_tag="SFZ84_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8202738.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            complement(8954..9901)
                     /locus_tag="SFZ84_000595"
     CDS             complement(8954..9901)
                     /locus_tag="SFZ84_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8202739.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(9905..10402)
                     /gene="pal"
                     /locus_tag="SFZ84_000596"
     CDS             complement(9905..10402)
                     /gene="pal"
                     /locus_tag="SFZ84_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG8202740.1"
                     /translation="MKKILFISIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(10479..11687)
                     /gene="tolB"
                     /locus_tag="SFZ84_000597"
     CDS             complement(10479..11687)
                     /gene="tolB"
                     /locus_tag="SFZ84_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG8202741.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(11697..12476)
                     /locus_tag="SFZ84_000598"
     CDS             complement(11697..12476)
                     /locus_tag="SFZ84_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG8202742.1"
                     /translation="MKNYGLSNLNSFLLALAIYVGIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            complement(12479..12868)
                     /locus_tag="SFZ84_000599"
     CDS             complement(12479..12868)
                     /locus_tag="SFZ84_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG8202743.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(12877..13431)
                     /locus_tag="SFZ84_000600"
     CDS             complement(12877..13431)
                     /locus_tag="SFZ84_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8202744.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLEILLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(13431..13820)
                     /locus_tag="SFZ84_000601"
     CDS             complement(13431..13820)
                     /locus_tag="SFZ84_000601"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG8202745.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(13824..15221)
                     /gene="atpD"
                     /locus_tag="SFZ84_000602"
     CDS             complement(13824..15221)
                     /gene="atpD"
                     /locus_tag="SFZ84_000602"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG8202746.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(15247..16131)
                     /locus_tag="SFZ84_000603"
     CDS             complement(15247..16131)
                     /locus_tag="SFZ84_000603"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG8202747.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(16140..17645)
                     /gene="atpA"
                     /locus_tag="SFZ84_000604"
     CDS             complement(16140..17645)
                     /gene="atpA"
                     /locus_tag="SFZ84_000604"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG8202748.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(17659..>17867)
                     /locus_tag="SFZ84_000605"
     CDS             complement(17659..>17867)
                     /locus_tag="SFZ84_000605"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HEG8202749.1"
                     /translation="YSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEE
                     LGYELSFSMKALQNKLNEYILKII"
BASE COUNT         6024 a         3205 c         2361 g         6277 t
ORIGIN      
        1 aagccaagac aaaaaaattt ttgatataat cttagaattt ttaaaaaata attaggtgaa
       61 tatatgaatt ttgcagatat tttttcaaaa ataagaagac aacaacctag tattaaagaa
      121 gctccaaatc actgggtaaa atgccaaagt tgtcatgctt tgatgtatta taaagaaata
      181 gaatcttgtt ttaatgtttg tcctaaatgc aattatcaca tgagaatttc agctgatgaa
      241 cgtattaaac ttttaagcga tgaaggcagt tttattgagt atgatgcaaa tttagaagct
      301 atagatcctt taaaatttgt tgatagcaaa tcctataaaa aacgccttag cgaaggtgaa
      361 agtaaaacag gtagaaaaag ttctgtcatc agtggagaat gtgaaatcaa tggtttaaaa
      421 acccaacttg ttgtatttga tttttctttt atgggcggat ctttaggttc tgttgaagga
      481 gaaaaaatcg ttagagctat acaaagagcc atcacaagta aaacccctct tgtcatcgta
      541 agtgcaagtg gtggagctag aatgcaagaa agcacttatt ctttgatgca aatgagcaaa
      601 actagtgccg cacttaaact tcttagcaaa gaaaaacttc cttatattag cattttaact
      661 gatcctacta tgggtggggt aagtgcttct tttgcttggc ttggagattt aatcatcgct
      721 gaacctgaag ctttggtagg ttttgctggt gcaagagtta tcaaacaaac tataggagca
      781 gatttgcctg aaggttttca aaaagcagag ttcttgttag aacatggact tatagatgcc
      841 atagttgaaa gaggagagca aaaacaatat cttagcgatg tactaaaatt ttttagtgga
      901 aaataatttg caagttaata tcttttgtat tcaaaaaagt gatgaattta aaacttggaa
      961 tgagaaatac tctaaactca tctccaaata cgccacttta aaagaaataa atgtttttaa
     1021 taaaaaaata gccttagctc aaaatttaaa tgccatagaa gcaaaaaaaa gctatgaaga
     1081 agcttttatg ccttataaaa aaggctattg tatcgctctt gatgaaaaag ggaaagatct
     1141 tacaagtata gaatttgcaa aactcatcca agataaaaat gaattaagtt tttttatagg
     1201 cggtgcttat ggtttaagag aagaatttaa tcaaagtttg gattttagac tatcattaag
     1261 caaacttact ttagcacatc aatttgttaa aaccttactt ttagaacaaa tttatcgtgc
     1321 attttgcatc aacaacaatc acccttatca caaatagaaa gttttaaaat gaaaaaaaat
     1381 gaaatacaaa atttcaaaaa tattttagaa gaaagaaaaa aagccatctt agaaaatttg
     1441 caaagcaatt caaatgaaat cgaagctctt cacaatagcg tcccaagtga tagtgtagat
     1501 ttttctgtca tagaaacagg ctctcaaatt gactttgcta tcagtaccaa tctcaaagaa
     1561 gaactcatag aaatcgaaga ttctttagat aaaatcaaaa acggcactta tggaatttgc
     1621 gaatcttgcg atgatgaaat cgactctcaa agactaaaag tcaaacctca cgcaagatat
     1681 tgtatcactt gccgtcaaat tgcagaacaa ggaaaaaaac atgaaaatta aactcttctt
     1741 acttgcaagt tttatttata tagcacttat ttttgccttt gcttggcatc tagaattagg
     1801 aagctatact ctaaatatca gcacttatac ctttgaacta cctattatga tatggcttgt
     1861 tattccttta tttatttata tgattttagc cgttttacac atagcatttt atggattttt
     1921 gcgttattta aaatttaagc atttttttaa agatgcagct aaatttgaag cttatactca
     1981 agatttactc cttgaaaaag atcttaaaac cacttttcaa acaaaagaat ttagatctgt
     2041 agcacaactt tttaaaacca taaaaacaca tgaaaaaatt ccacactcaa ataaaatcaa
     2101 tgaaatttta gatcttattg atggtttaaa taaaaacgaa ttttttaacc ttagcaaatt
     2161 taaactcgaa aataacaatg ttttatattt gcaaaatgaa aaaaatcatc tcaaaaatga
     2221 tgcaaattat gcctataaca aacttaaaaa ccttaatgaa atcaaagatg aatttgaaga
     2281 aattgctttt aacactctta tagaaaaagc tagttatgag caaattaaaa atgtaaaaat
     2341 ccctaaaaag ccttctgaag ttctcacact tatcaagcgt tttaaagaag gaaatttaga
     2401 acttagtgta gcagaatatg aagttttact ttcacacaac atattaagcg aaaaagacta
     2461 tcttaatgca gcaaaactaa gtactaaact tttaaatcct gatgctattt taggaatttt
     2521 taacaaaatt aaaaatgaaa aaagcgaagc tttaagagca tatttatatc ttttggctga
     2581 atttggactt ttagatgagt taagagaaca aattcacaat gatgataaaa aatttaatga
     2641 ttttaaagcc tttttagcct tgcgtgaaaa aaatatcaaa atcgatctaa atcaactcat
     2701 acaatgatag attttagcaa aaaacccctg tttttagccc ctatggcagg tttttcagat
     2761 ctgccttttc gtaatgtagt aaaaaaattt ggtgctgata ttaccataag tgaaatgata
     2821 agttctaatg ccttagttta tgaaagttct aaaactttac atatgctaga aagagctgaa
     2881 ttagaaaatc cctatatagt ccaaattgca ggtggagata aagaagtgct aaaaaaagca
     2941 gtgcaaatgc taaatgaaat ggattttgta gatgggatcg attttaattg cggttgccct
     3001 gtaaataaag ttgttaaaca atgtgctggc agtgctttgc tagaaaattt agagcttttt
     3061 aaaaatcttg taggagtgat taaagaaaac aataaaaaaa gccttacaag tgtgaaattt
     3121 cgactaggat ttaatgaaaa atatcctgaa aaaatggcta aaatttgtga aagcttgggg
     3181 gtggatttta taagtatcca cggacgcaca agaaaacagc tttatagcgg aaaagccgat
     3241 tatggatcca ttgctagtgc taaagcgagc gtgaaaattc ctgtgattgc aaatggcgat
     3301 attaacgcac aaaacgctaa agaagtttat aaaatcacaa aatgtgatgg actcatgata
     3361 gggcgtgcaa gcgtaggaaa tccttggata ttttatgaaa tcaaaagcgg taaaagtgta
     3421 gatgaaaaac tcaaaaaaga aatcatactc actcattttg atgaaatgat aaaacactac
     3481 aaagatcaag gcgtaagtat atttcgcaag catttacacg agtattctaa agggcataaa
     3541 gacgcttcag cctttagaga taccgttaat cgtatcgaca atgtcgaaga aatgcgaaaa
     3601 aaaatagaag aattttttag tttaacttga ttgattttta taatttaaaa aatcttaagc
     3661 cttaatatct ataatttttg ctgaagtgtt ttgagaaaga attttattaa attcccctgc
     3721 attatcattg ctaaaattca taccaaaaag aatttctagc tcatcgcttg tgccaaattt
     3781 agtttctagt agttttctta aaagctcatt cattttatta tcatctttgt aggtttcgct
     3841 tttactttct acttgtatag gtttgaaagc ttttttgtct tcttctgaag tttcttgcag
     3901 ttttttctgc gatgaatcaa tattgttaaa atcaacaaaa tatttttttt gaagctcaag
     3961 atatttttct ttaaattcat ctatactttt gcttgtgtga aaaattttaa cataagcttc
     4021 atcataactc acgccatcaa tatgcatcca acgagggtgt ttagcatttt catccatcca
     4081 ttgaaataaa tttttaactt ctgattctgg taattcattg tttctaagct tatcttctat
     4141 tgaaccctcg actaattcta ttttatcgct gaatttttta gaaatcttat acaaatctat
     4201 caaatcatta cctaattctt ctctttgttt ttttgtaagc tcgggatttc cattttcaat
     4261 actttcatct cttattttgg taagtgtttg caaaggattg tttccaaaat atctattaaa
     4321 agagcttaga ggaaatacta tcatctttat caccttggaa taaattttat tctaaagtaa
     4381 atcggcaaaa atgatttttt ttaatatttt tactcatata tttaaaatat aaagcgcaag
     4441 tcttctagcc cttgaaaaaa atcttactta atcttccaaa gtccttacaa tcaaactttt
     4501 aggtaaatta aaatgctcta taagttcttt ctctttttct ctcatttctc cattatcatt
     4561 ttcatgatca aaacctaaca aatgaagcat agcgtggata aaaagcaagc ttatttcttc
     4621 ttcatagcta tgccctaact ctttagcctt ttcttttgcc aaatccacat tgatcacaac
     4681 agaacccaaa ggcaaactct catcgatatt ttcaagtgga aaagaaagta catcagtggt
     4741 tttatcttgt tttctttgct ctaagttaat ttcttgcatt tctttactat ccacaaagac
     4801 aagctccaca tctttaggac ttaaaaaact tgctatagat tctaaaaaat cacatttttc
     4861 atcacttaat atcataaacc ttccttaatc aaatgatata aattttctat ttcttcatca
     4921 tcaaaaatcg cacaattttt actactataa aattgtttta gttttttctc ttcaaactca
     4981 aatcctaaag cacattgaga atgcgaaggt aaaaaagccc ttagcaatgt aatggaattt
     5041 tgaattttct catcacaggc aaaacaaaaa aaatctttat gcaatcttcc ttcaaattcc
     5101 aaaattttta aataagcatc aacaataaca cgctttggat tttgtttttc aaaccttttc
     5161 acacactcat caagtaaatc aaaataaaaa ctatcaagct cttctacatc ttttaagtgc
     5221 ctatataaaa gacggataaa ttcttgccaa ataagcattt tatccctttg cataatccat
     5281 aaaaatccca aatgcaatac atctttaagt cttggtaaaa aactaggatt ttcttctaaa
     5341 gcaaagtcga ttttatagcc gcttaaaata ctagaatgtc taagtccata aaaacgataa
     5401 gccttaataa gcattttagg acttaaaata taaacaatca aatcctcatc tttaactttt
     5461 tgagtatgaa gtataaagcc ttgcattaaa caatttcaat accataagcc ctaagtatat
     5521 caaaagcgga tttttctaaa ttttcatcaa aacttgcact taaattttgg tgtaaaatta
     5581 tccttgcatt aggcttagca ccaaaagcta aaataatatt acaaaacaca caaatatgag
     5641 aaacaagccc tgcaaaatga agttcttcat aatcactttt ttgtatgaaa ttagctaatt
     5701 ctaagctacc aaaagtattt ttataaaaaa ttttatgagc tttttgtaaa aaaggttcaa
     5761 attcctttgg catttgccaa cccaaactct ctttaatgca atgttttaca ggtaaattta
     5821 aaccttcttt actttgtaga taatgctcat catgcgtatc ataggttaaa agcaaatgcg
     5881 tgttattaaa atcgatttga tttaaggctt taagaatatt ttctttgatt tttaaagcct
     5941 tatcaaaacc taaacttcca tcaataaaat cattttgata atccactaaa acaaaagctt
     6001 ttttcatgct tttatgcctt ttgaagccaa aaactttctg tgtgtaaatt tgtaaaagca
     6061 gtttttaagc ttgtaaaaag cttaggatga tctttttcta aatttgctaa aagctgttta
     6121 gcttcttctc tagcgtgtgg aaatttcaca tttttttcgc tgagtttcat accaggacaa
     6181 aattcatttc ctatcacgct aagttcattt tgcgtagcat tatccctaag ctgtctttct
     6241 cgcacaaaaa tcaaagggcg tatcacagtt ataccgcgtt tgctttgata aataggcgct
     6301 aaggttctta aagctccatt atgaataaaa ttcataaaaa agctttctgc tgcatcatct
     6361 aaatgatgag ctatagcaag cttgttaaaa cctttttcaa gagcgtaagt atataaagct
     6421 ccacgacgca ttctcgaaaa ataactacaa aaacttgaat tttctcttat ggtatcgcct
     6481 gaaacttcat aaatatttga atcaagcacg ctatgtttaa tgccgtgttc ttcacaatgt
     6541 gcatgaagat gagaataatc ctcacccata ccataactca aagttaccgc ttcaagttca
     6601 aatttaaaag gagcgtgagc ttgcatacga tttaaaagat gggctaaagc caaagaatct
     6661 ttcccaccac taagccctaa aagaacccta tctccatctt taataagtcc aaatttagca
     6721 ttagcttgtg caacttggcg tatgagtttt ttgctaagat ttatcataat ttctcgcaca
     6781 ttttaagcac aaaattggct gaaattttag ctgaattgat cacaaactca tcaaaatcaa
     6841 attcagcctt ttcccctgct ttatcactca tagctcttaa gataaaacaa ggcaccttta
     6901 aagcatcaca aaccaaagcc acgcttgcgc cttccatttc acaagcatcc gcattgaaaa
     6961 tttctctaat ttttgctttt tttgcttcat cgcaaataaa ctcatcaccc gttgcaataa
     7021 tgcctgcacg cagtttgata tttaattcct tagcaacttc taaagcaaga ttgtttaatt
     7081 tctcatcggt tttgataaaa atttcattac ctggaacaaa acccaaagga tgtccaaaag
     7141 cagtaatatc aagatcgtat tgagctaatt ttgttgcata aagcaaatcg ccaatttcaa
     7201 gttcaggatt aaaagcacct gcaactcctg taaaaagcaa agcttgtgcg ccaaattttt
     7261 ctatcatcac actagcacta agagtagaat ttaccttgcc aattttagaa tacgctaaaa
     7321 caagttcatg gtttttatac tttgcaaaat aataagtatt gttagcgtgt tctattttcg
     7381 tataatcttt aagtgtttca agtaaaggag tgatttcttc actcatggct cctaaaattg
     7441 ctattttcat catacaacct ttaaaaattc atcaatatca ttcatatttg ttaaagcata
     7501 agtttctttt gaagtgattt ttttattcaa acccttaagc acacttgcgc caaattctat
     7561 gaaataatct acttcatttt cacatgcctt aatgctttgt ttataaagca caggagagat
     7621 aagttgtgct tttaaaagct caagggcttc ttctttgctt gtataaattt tggcatttgc
     7681 attagaaagc acggctttaa aatttggttt taataccttt tcaagctcca cacaaagctt
     7741 agctgaagca ttttccaaaa gaggacaatg acttgccacg ctcatattta aaagcatagc
     7801 tcttttagct cctgcttctt taaatacact ttcataactt gctaaatcag gttttaaacc
     7861 tgctacaacg atttgtccat cgcagttata atttgcagcg aaaatttgct tgttttcttt
     7921 ttgtgctttt tgacaaagct cttcaacctt ttcatcatca agccccaaaa ccaccatcat
     7981 acctgcttca acttttgcac aatcttcttg catgaaaagc cctcttttat tgaccaaaga
     8041 aagagcctct aaaaaatcaa aagcaccatt gacagctaag gctgaaaatt ctcccaaaga
     8101 atgccctaaa gcaaatttcg aacttaaatc aggttttttt tcaagtaaaa cactataagc
     8161 cattaaggaa tttaaaacga tggcgggttg agtaaattca ctttgattga gtttttcgtt
     8221 ttcttcaaaa agcaaatgtt taaaatcaat cttacaaaaa tcacttgcgt tttgaaggag
     8281 ttctttggct tttatagagt tttcataaaa atcttttccc atgccaagac tttgagagcc
     8341 ttgacctgga aatataaacg cagtcttcat taatgacaac cgcaaccgcc gccaccacag
     8401 caaccgccgc caccatgtcc atgtccgtga tgatgatcgt gtccatgtcc gcttccacaa
     8461 ccacaactat gacttcctgc gataatacct gtaagaattt catcttcact cgcagctcta
     8521 gcatctacga tatttaaaga aaaaagcaaa tcacgacctg cataaggatg attataatca
     8581 attgtcacat cattttcacc aatttctttt acagttacac gaacggtttc gccattttca
     8641 ccttcgccaa aaagctccat acctactttt aaatcaatac ctgcaaattg ctcttttggt
     8701 aaagtttgaa ccgcattttc atcgtattcg cctaaacctt tttctttttt aattaccaca
     8761 tcagcattgc tagggcaatc aagcttcatc acttcttctt ctaagctttc taaaatctga
     8821 cctttaccca aaataaaaga aataggttga gaatataaat ttgattctaa aacttcattt
     8881 gtatttgcat cttttaactc ataaaacatt gaaactacac tatttttttc tatagccatt
     8941 ttatctcctt aatttatttt ctattaggtg aagcttttgc ttcgggtgaa tttggataat
     9001 tagtttttaa agctttataa aaaccatttg ctgtttttgt atcacctgtt ttatccaatg
     9061 aaatggcagt atgatataaa agttttggga aataatctcc ttttgtactc aaagaagaac
     9121 tttttttata ataaacaata gcattgttat aatttttttg tttatactcg atctccccta
     9181 accaaaaatt tgctcttgca ggtttatact gctttgttat gagaaaattt aattttgctt
     9241 tggaatcttc aaaagcattt ttatcaacat cttttatcgc taattctaaa atttcattat
     9301 tttttttctt tttccaagat tcatcaattt gttttgcttt atcatcttgg gtattttgag
     9361 tattattgtt ttcaatggta ctatttgaat ctgtagttga aacaacaaca ctaggtgtaa
     9421 tagttttaac gcttaaattt gcatcattta attcgttttt agaaacataa tttgcattaa
     9481 tagcatctac taaagaacta agttcggcta aaactttttt tacttgctta ttattagctt
     9541 cttgaatttt tctactttct tcaacataag cctttaattt ttgaatttca ctagtaaaat
     9601 tattttcaat attttgatta ttctcttcaa cttgacttaa tctagaattt gatttagcat
     9661 attgagaatt tataccttct aaagtgcttt gtaaaccctc gattctttcg ttaatttcat
     9721 taattctagc atttgtttgt atattttcat tatttaaatt atctaacttt tctttaaata
     9781 atttttcatt tgaagttaaa ccataagaag aattgcttgt tatatctcct gcaccaaaag
     9841 ctgagctttc tgcataaagt aaagtagctc caagaagagc tactgtgaat atttttttca
     9901 ttaattatct tgataattta aattcagcac gtctattttg cgcatcgcaa gctttagttt
     9961 tttcagtgca cacaggattt gtttctccat agcttttaac agcaattcta tcagcattta
    10021 cacctttagc gattaaagct tcttttacag cttttgctct ttttaaacct agagcttggt
    10081 tatattcatc ggttccccac tcatcgcagt ttccttcaac agtaatactt acaccgctta
    10141 cttcagtgtt aaaaatatta gcatttgtgc ttacaacatt ttgcatatca ggacgaatgt
    10201 tgaatttatc aaaatcaaaa tatactttat ttaaagtatc attaagttga gaaatttttg
    10261 aatcaatatc ccaaccatca cttccacctg aaccacgatt tgaatcaaca ctactatcac
    10321 cgcttacgct agtgcttttt gtgctacaac cactaataac aactgcaaga gctgcaattg
    10381 aaataaaaag aatttttttc atttatgacc tttcaaagtt aataaattct tattattata
    10441 tctaattttt aattaatttt aacctaaaat tgaaattttt accaatcaat tgattgaatt
    10501 tttccaaccc taagaggaaa ataaaaagtc ttatttgcat ttacacgaat aacacccaaa
    10561 gcactttgcg cacctaaata tttgataaat actatacttc caccatcact agaaaatctt
    10621 ggaaataaat tttttccatt tgctgtaagt tgacgaatat aatcactatt aattgacatc
    10681 aaataaatat taaaaacacc tgcttgattt ggttcacgac ttgaataaac caaaaaatct
    10741 ttataagtcg aaacagccga attgtttcta ccatgaaaaa caacttgttc agcactattg
    10801 ctatttaaat cttgcataaa aatattagga tatcctaaac gatcgcttac aaataccact
    10861 ttactatcat ctgagccaat aaaatttcca ttaacatcaa taccagaata attagttaat
    10921 tgtgttagat ttttggtatt taagtcatat aaataaacat caggctgatc ttttggagcc
    10981 atggtaacaa gtagtttact tccatctaca ttcacatcac ttgctacaac cataccgcca
    11041 cttgataaaa ttttactagc tttattggta tttaaatcat aacggtataa agttggctta
    11101 tcatgatcat aagctgtata ataaaataga gtttgttctt tatttcccca ttttggaaat
    11161 aaattaagtc caccatcaac aataactttt tgataagtta aagtataatc agccataata
    11221 atttgacttt ttttagagct agaatttctc gcgatcaaaa ttttatgatc catccaatca
    11281 acaggtgcaa gtcctaacgc atttacagaa gctttgacgc ttttatgtgc caaaaatgga
    11341 tattgctcta aaccatttaa agtataagtt tgctctgact tatcagaacc gccagctttt
    11401 atttttacat ttaaactcaa agtgttacca tttttattta aagtgtattc aaaaatataa
    11461 ttacttgtct cagttgcatt agcaacaact tcaaagtttg aacttacttt caaatcgttc
    11521 acaatgatat tataaaagct tttctttaaa ttctcatcac ttaaatttga attgtcttta
    11581 acaataatct ttggtaaaac tacaccagaa ttaacaacat caatcactgg atcttctgcc
    11641 caaagacttc ctaaaaagac taaaaaaatt gctacaattt ttttcatttt tttctcctaa
    11701 tcatttttaa cttttacttc atctcttaaa ttcatggtaa tgcttatatt tttattttgc
    11761 ggaggataag taataaattt acctttttga ctttctaaaa attcagccac tttagcatca
    11821 tataaaggat tcccactttt ttcaactgaa gtatagccaa attttccatt ttcatcaata
    11881 aaaattttta ccttaacaga aattttttca ctatttggat aatactgagt ccatctttga
    11941 gtgataatac gcacaacttt ccctaaaaat tcatcataaa ttccaatttt ttgtgccttt
    12001 gtactttcac cttgtgttga actttcttct tgaagcaagc tatcattaag ttgttttaca
    12061 agttcagaag cttgaggttt tggggcacta gaaattcctg atttagcact tgattgaatt
    12121 tttgtagtct tttcttcttg tatttcttta atatttccaa aaagctcatt aaaattactt
    12181 gccttttggt caatatcttc agttttaact gttttatttg tagtctgagc aaaaagcttt
    12241 tctatatcaa tttgctctgt tggtttttgt atttctttag gagtgttgct ttgagtaata
    12301 acttgttttg atggttcagc aagttcaata tctacaaaac tatcttttat atcggtatat
    12361 tgtatagcag gttcaacctc gcttacaagt ctaaaaaaaa caagaattac tataccaaca
    12421 tatattgcta aagcaagtaa aaacgaattt aaattactca aaccataatt tttcatgatt
    12481 attcagtctg taaagcaact ttattaaatc ctaaattttt tacacttctt aagactgaaa
    12541 taacatcgtc atattttaag cttttatcag cgcgtataaa aaccggatct tcggtattaa
    12601 attgtgcttt tctttgagca agattgtcag caaaacttat aaaatcgtat ttttcttgat
    12661 ttaaaaaaat ttcttttttt gcattaatac taataattaa actcttaaca gttggagcgc
    12721 tagtattttt ttgactacct tgtggaagat taattttttc ttcataagta atgcttggag
    12781 ctgttaccat taaaatcgca agcaatacaa gcataatatc tactaaaggt gtgatattaa
    12841 gttcaggttt ttcatcatca aatggcattt ttaaccttat ttactcgaac ttataacttt
    12901 aatctcgcta tcaataatgc ttaaaagttc aaaagctttt cttttaatga tgagatgaaa
    12961 tgtataagca ggaattgcta ctaaaatacc acaacctgta gcaactaaag cctcactgat
    13021 tttaggagct atgatactta aagaattttg agttccaagt ccaccaaaag tttcaagtat
    13081 agaaataact gtcccaaaaa gacctataaa aggtgaagtt gaagcaataa tactaagcca
    13141 agtaagtcca gcagaagcgc ggcgacttgc taaattttta tagatttcta aatgatttga
    13201 agttgtatca ttgcattttc ttaaaatcga atcagtacga cttaaatcct tctcacccaa
    13261 gagcaaaatt tctaaacttt ctttttcttt atttctccat gtagccaaat aagtcaatct
    13321 agcaaacaaa atactaaatg ctaaaataaa atataaagaa agccataata aaactatata
    13381 agtaataata cttgaactat tgaaaaaatg aaatatagct tcaaaattca ttaatgcatc
    13441 cttgcattat caagttttga aaaagttgct gctaaagctg cattatcaga actcatagat
    13501 ttaatcaaat cttttgcttg agcaagattt ttttcaatct cactttcatc acttccacaa
    13561 acccaaaccg caccctttgc taacacgcaa atcttatctt catctacctt tgcatgtcca
    13621 gcatcaatag caattaattc atggtttaaa tcagcttttt caatatcaat tactccagat
    13681 tttaaagaag aaaccaaagc agcatgtcct ttaagcacgc caaattctcc ttcactaccc
    13741 ggtaaagtaa cagattttac ttctccttga tagattacac ccaaaggcgt aactatctcg
    13801 aaattaatca aatcgttcat aaattaacct tttaatttat ccgcttttgc aatagcttca
    13861 tctatatttc caaccatata gaaagcattt tctggtaaat gatcatattt accttctaaa
    13921 attcccttaa atcctgctat tgtatcttca aggcttatat attttcctgg gctacctgtg
    13981 aaaacttctg caacgaaaaa tggttgtgat aagaattttt caatctttct tgctctttca
    14041 actacaagtt tatcctcttc gctaagctca tccataccta aaatggcgat gatatcttgt
    14101 aaatctttgt atttttgaag cactgattga acaccacgag caactttata atgttcttct
    14161 ccaatgatat ttgggtcaag cattcttgaa gttgagtcaa gtgggtcaac tgcaggataa
    14221 ataccctttt cagcaatagc tctatttaaa accgttgtag catctaagtg agcaaaaaca
    14281 gttgctggag ctgggtcggt taagtcatca gctggaacgt aaacagcttg aactgaagtg
    14341 attgagcctt ttttagttga agtaattctt tcttggaatt tacccatttc acttgctaag
    14401 gttggttgat aacccacagc tgatggaatt cttcctaaaa gtgctgacat ttcagaacct
    14461 gattgtgaaa atctaaagat attatcaata aacataagca catcaagacc catttcatct
    14521 ctaaaatact cagccattgt taaacctgtt aaagcaatac gatttcttgc ccctggtggt
    14581 tcattcattt gtccataaca tagagcaact ttgtctaaaa cattactttc tttcatttca
    14641 ttataaaggt catttccttc acgagttctc tcacccacac ctgcaaatac agaatagccg
    14701 ctatgcttaa atgcaacatt gtgaataagc tccataataa taacagtttt accaacacct
    14761 gcaccaccaa aaagacctac tttaccacct tttgcataag gagcaagtaa atctacaact
    14821 ttaatccctg tttcaaaaat ctcacttttt gtgctttgat cttcaaaagc tggtggatct
    14881 ctatgaattg cccatttttt atcaaaagaa atttcttcac cttcatcgat caaatctcca
    14941 gtaacattga aaattcttcc taaaactttc tcaccaacag gaacactaat aggagcacct
    15001 aaagcctcag cttttaagcc ccttaccaaa ccatctgtca tatccatagc aatagttcta
    15061 actctattat ctcctaaatg agctgctact tctaaaacaa gtttatgttt ttttccttcg
    15121 ctttcaaaat ttacaacaat tgcttcatta atttgaggta aatagtcgtt aaaatctaca
    15181 tcaacaaccg gacctaatac ctgtgaaata aatccttgca ttatttatct tctccttaaa
    15241 attttactat ttcattgatt caacaccact gataatctct ataagctcag tagtaatgga
    15301 ttcttgtctt gctttgttat aagctaaatt tagttgtttc actcttgcct ttgcgttatt
    15361 agttgcatta tccatagctt gcattcttgc gctatgctct gccgccaaag aatcgattaa
    15421 cgcataatac atattatact caaaatacgt tttcattaaa tcttctaaaa gctcagttcc
    15481 ttccggttca agctctaaaa gagaattatg agtctgttca atactctttg gctcaactgg
    15541 aataagatga ttaattttaa gttcttgggt aatcatattt ttataaccat tatgaactaa
    15601 aatcacttca tctgtatttc catttaaaaa atcatctaca gcagcatgaa ttacttcaca
    15661 tgctttctca taatcaggac tagaactaag atggaaatat ttctctaaca attctatttt
    15721 ttgaaaatta aaatattcaa tcccagtttt acctatagct ctaagacgaa tattaatatt
    15781 ttttgcttca tattctttta gcatttcact tactgttttt aaagtcttaa tattaaaacc
    15841 accgcataag cctttatctg cagtgataaa tattaaatct acggttttaa tttgttcttt
    15901 tttatgaaac aaagataaac gcacatcatc ttcattgtga acaattttat tgatctgaaa
    15961 tgaaatttca ctcaaaattt catcgatttt ttgtgcataa atttttgatc ttttagctgc
    16021 ttcttctgct ttttttaact tagcagtaga aactagcttc atagcatttg tagtcttttg
    16081 agtgttatga acacttttaa tttttctttt aatttctttt aaattagaca taaaagacct
    16141 tataaatgat ttgctttaaa ctcattaatg gctttagcta gtttttcttc caaatcagaa
    16201 tctaaagctt ttttagagcg aatttgctca aaaatatctg gatgttttgc ctcaataaaa
    16261 ggataaattc catcttcaaa ttccttaatt ctagaaacag caatatcatc taagaaacct
    16321 ttggttcctg caaaaattaa aactacttgt ttttcaacgc taagcggaga ataaggtggt
    16381 tgttttaaga gttcaaccat tctttgtcca cgttcaagtt gttttctact tgcctcatct
    16441 aaatcactag caaattgtgc aaaagcttga agctctctat attgagcaag gtcaagtctt
    16501 aatgtgcctg aaacttgttt tgtagcttta atttgagcag ccccacctac acgagatact
    16561 gataaaccaa cattaattgc aggacgaatt cctgaattaa ataaatcagt ttctaagaaa
    16621 atttgtccat ctgtaattga aataacatta gttggaatat aagcagaaac atctcctgct
    16681 tgtgtttcaa ttatcggcaa tgccgtcaaa gaaccagcac ctaattcatc atttagcttg
    16741 cttgctcttt caagcaatct tgaatgaagg taaaaaacat cgcctggata agcttcacga
    16801 cctggaggac gacgtaaaat caaagacatt tcgcgataag ctacagcatg cttgctcaaa
    16861 tcatcataaa caattaaagc atgttttgcg ttgtctctaa aaaattcacc catggttaca
    16921 ccagtatatg gagctaagta ctgtaaagcc gcaggatctg aagcaccggc atttacaaca
    16981 atagtatatt ccatagcacc atgttcttct agtcttttaa ccacttgtgc cactgtactt
    17041 tgcttttgac caattgcaac atatatacag ataactcctt gacctctttg agatataata
    17101 gtatcaacag caacagtagt tttacctgtt tgtctatcac ctatgataag ctctctttga
    17161 ccacgaccaa ttggcacaag cgcatcaata gctttaattc ctgtatgtaa aggctcatga
    17221 acactttttc tcgccataat accttttgct ttttcttcaa caaaacgata ttcattagca
    17281 ttgatcacac ctttagcatc aattggctca cctaaagcat ttacaacacg gccaatcaaa
    17341 gcctcaccta ctggaacttt aagtaatttc ttaagtcttt ttacagaagc accttctttt
    17401 aaaccttctc cttttccaag tataacaata cctacactcg actcttcaag gtttaaggcc
    17461 attcctttat caccattttc aaattctacc atttctccag ccataatatt cttaagtcca
    17521 tataccttag caacaccatc agctacagaa ataatctttc ctgtttcttc aatttcaaga
    17581 tttaaatcaa aattttcaat tctttctttg attattgaac tgatctcatc agctttaaat
    17641 ttcatttact ttttctcctt agataatttt caatatatat tcgtttagct tattttgaag
    17701 agctttcata gaaaaagaaa gttcataacc taattcttct aattctattt taacactatc
    17761 atcttgactg attttattat ttagtttaat atttgcatca aattttttgt taagtttgac
    17821 ttcaagatct ttaagatttt cttgacttaa tttttcttta gaatata
//
LOCUS       DARGED010000022        17714 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.022, whole genome shotgun sequence.
ACCESSION   DARGED010000022 DARGED010000000
VERSION     DARGED010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17714
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.022"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1359)
                     /locus_tag="SFZ84_000606"
     CDS             complement(<1..1359)
                     /locus_tag="SFZ84_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG8202750.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLIHWQIHKDGANFYHEYKNVGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKLTPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEE"
     gene            complement(1356..2279)
                     /gene="hemC"
                     /locus_tag="SFZ84_000607"
     CDS             complement(1356..2279)
                     /gene="hemC"
                     /locus_tag="SFZ84_000607"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG8202751.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(2276..2665)
                     /locus_tag="SFZ84_000608"
     CDS             complement(2276..2665)
                     /locus_tag="SFZ84_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG8202752.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(2662..4371)
                     /locus_tag="SFZ84_000609"
     CDS             complement(2662..4371)
                     /locus_tag="SFZ84_000609"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG8202753.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(4355..5653)
                     /locus_tag="SFZ84_000610"
     CDS             complement(4355..5653)
                     /locus_tag="SFZ84_000610"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG8202754.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(5653..6546)
                     /locus_tag="SFZ84_000611"
     CDS             complement(5653..6546)
                     /locus_tag="SFZ84_000611"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG8202755.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(6560..7096)
                     /locus_tag="SFZ84_000612"
     CDS             complement(6560..7096)
                     /locus_tag="SFZ84_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG8202756.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(7099..7362)
                     /locus_tag="SFZ84_000613"
     CDS             complement(7099..7362)
                     /locus_tag="SFZ84_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG8202757.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(7501..8058)
                     /locus_tag="SFZ84_000614"
     CDS             complement(7501..8058)
                     /locus_tag="SFZ84_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG8202758.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(8055..8900)
                     /locus_tag="SFZ84_000615"
     CDS             complement(8055..8900)
                     /locus_tag="SFZ84_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG8202759.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(8901..10025)
                     /locus_tag="SFZ84_000616"
     CDS             complement(8901..10025)
                     /locus_tag="SFZ84_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG8202760.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(10034..10345)
                     /locus_tag="SFZ84_000617"
     CDS             complement(10034..10345)
                     /locus_tag="SFZ84_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG8202761.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(10359..11228)
                     /gene="sucD"
                     /locus_tag="SFZ84_000618"
     CDS             complement(10359..11228)
                     /gene="sucD"
                     /locus_tag="SFZ84_000618"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG8202762.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPSFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(11238..12401)
                     /gene="sucC"
                     /locus_tag="SFZ84_000619"
     CDS             complement(11238..12401)
                     /gene="sucC"
                     /locus_tag="SFZ84_000619"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG8202763.1"
                     /translation="MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(12402..13304)
                     /locus_tag="SFZ84_000620"
     CDS             complement(12402..13304)
                     /locus_tag="SFZ84_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8202764.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFLSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(13301..15505)
                     /locus_tag="SFZ84_000621"
     CDS             complement(13301..15505)
                     /locus_tag="SFZ84_000621"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG8202765.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(15622..>17714)
                     /locus_tag="SFZ84_000622"
     CDS             complement(15622..>17714)
                     /locus_tag="SFZ84_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG8202766.1"
                     /translation="INTKSEFYYFQGRASGELLDFNASISYKDKNLAYKIEDLNIRNI
                     TEIFKRVNKRIELPQSLNLWVAYRAKGEFYHLDYLRGFIDFTKDNYYLDNISASGYVN
                     NVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVG
                     IYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGIL
                     ALENASISLADFNIIKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQ
                     ISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKILFS
                     FSPLLKKLGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVKNK
                     GIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNISFGGAN
                     VALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSNIDDNYL
                     NEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGINQLISFIDTVPSLLM
                     FKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLNTVDFSL
                     ELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTPFN
                     LIKNIIQLPANLLN"
BASE COUNT         5762 a         3506 c         2086 g         6360 t
ORIGIN      
        1 ctcttcaact tgtatttctt cgcaagcatc aagtcctgct ttacccccaa aacaagaatt
       61 aggtgaagca tgatctaatt gatcacaaat tccttctgaa attaaaattt tctttgtatt
      121 aaaacgatct aacatataag gaattaaagc atcataatct ttcaaagaag gtgcattttt
      181 atccacaaaa attgcatgct taacaaaact catttgccct actccccaaa atgcatgcat
      241 aatttgttgc gcatgagcgg ggtattttgc atcgattttt gctaagataa gattatgaaa
      301 gaccccattt tcaggcatat tataatcaat taaatcaggt actgaagttt gaagcaaggg
      361 taaaaaaatt ctttcagtac caagccccat gatcttatct tctaaaggag gctttcctac
      421 aaccgttgct tgatagatcg catctttttt agcataaatt ttttctactt tcatcacagg
      481 aaaaagttca gcaggagtgt aaaaacccgt atgatctcca aaaggacctt cgattttaaa
      541 ctcttctaaa tccacataac cttcaataac cacatcacta tcataaggta caaaaatacc
      601 attttcacaa ggagtaagtt ttgcaggagt ttttttaata aaaccataaa gtaaaagttc
      661 aaaaattccc ttaggtaaag gtgcttgaga acaccaaata taaagcggat ctccacctat
      721 ggctatactt acaggcattt ttttaaaacc aacatttttg tattcgtgat aaaaatttgc
      781 cccatcttta tgaatttgcc aatgtattaa aagttcattt ttatcactca tttgcaaacg
      841 atacattcca agattatttt gagttttatc taaattttgt gtataaactt gccccatggt
      901 aataaattta cccgcatcat cttcccaagt ttttagtatg ggaagttctt caagtgagtt
      961 taaaatttca taatcataca aggctttatt ttttttcagt cttttaggag gaatattttt
     1021 aaaacttaac aaattcataa aaaaatccat ttttgcttta aaactcgtag gaatatgaag
     1081 cttggtgagt tttgaaattt cttcagccac ctcttcataa tcacgtccaa aagctaaatt
     1141 taaagccttt tcattgcaaa aagtattcat caaaacagga aatttatatt gtttatttaa
     1201 ttttttatct ataggatttt taaataataa agccttccct ttttctcctt ttttagcttc
     1261 tatataggct aaatgagcga tttcaagatc tacatctaca ggttcttcaa ttacccttaa
     1321 aagatcattt tcttttaaaa tttgaataaa ttctttcata tcatactctc agcttttttt
     1381 aaaagttctt tagcaccttt agcaataaac tccttagcca aactctctcc aaaaccttta
     1441 aaatcattct ttttaatcat tctcttatct tttaaaattt cacttccatc gggtagtcca
     1501 agtaccgcac gcacacaaat ttcatctccc aagagctctg cgttaatacc tataggaact
     1561 tgacaacctc cttctaaagt agcaataaat tctctttcaa tgcttgtttc aatcaaagca
     1621 ttttcatcat ttaaacattt taaaagttct aaaatttttt catcatttat gctttctata
     1681 cctaaagctc cttgagaagc cgcaggaata agctcatctt tgctaaattc ataaacaaaa
     1741 ttcacttgct tatctaagtt taagcgttta attcccgcca ttgccaaaat aatcgcatca
     1801 aaatcattat tttttaattt ctctatacga gaattgacat taccacgcaa agaaataata
     1861 tctaaatcag gtcttaataa taaaagctgc atcttgcgtc taagactagt agtgcctatt
     1921 tttgcacctt ttggtaaaga aagaaaatct ttataatttt gacttagcat agcatcattg
     1981 ctttgctctc ttttgcttac cgctgccaaa actaaacctt gaggaaaaaa actaggcaca
     2041 tcttttaaac tatgcactgc taaatgtgct tcttttctta acatactttc ttcaagttct
     2101 tttgtaaaaa gtcctttacc accaattttt gccaaaggag aatccagcaa aacatcgcct
     2161 tttgttttaa aaccttctaa aagcacttca atttgatgtg tattttttaa aatttgggct
     2221 acatgctcac tttgccaaag agccaattga ctttttcttg ttgcgataat aagcttcatt
     2281 ttctatcctc tataatttca acatcaataa tttcttcatt agaattttga tactcttgct
     2341 tggtgtattg atattttgat ttagttatta atttcaaagc aataccaaag aaaaatacaa
     2401 aaattccaaa aacacttgta ataatccctg gaaaaacaag caaaaaccct gcgataacaa
     2461 aagaaaattg tgttaacata tcctttaagc cacccatttg aaattcaagc atatttttcc
     2521 aaaaaattcc caataaaacc gcaccaaaaa tcatactcaa aagtatgaaa aataaaaaat
     2581 taccaaaacc aaaaaacact ataaaaagta tacttgcaat aatttcaagt acaaataaag
     2641 ggcttaaact taatttataa ttcataacac tttcttttta agaatttcca taagttcatc
     2701 agtttttata agttctttta tcaaaccttc tctttggata agctctattt cattcttttc
     2761 taatcccttg ccaacaacta acgcataagg aaagcccata agttcaaaat cattcatttt
     2821 aaccccaaaa cgctcatttc tatcatcaag caatacctct aatccaagat tagttaaatc
     2881 ctcataaagc ttattagcaa attctaaagc cttttcatct ttgagatttg aaacaataat
     2941 ttcaagcaca aaaggagcta aagttttatt ccaaatacat cctttttcat catgacttgc
     3001 ttcaatagct acagccaaca agcgtgaaac acctatgcca taacatccca tgtaaaaagg
     3061 ctgacttttg ccattttcat ctaagaaatt tgcattcatc gctttggaat atttttgtcc
     3121 tagcttaaaa atatgcccta cttctatacc tttactttgt tttaattttg ctccacattt
     3181 aacacagcaa tccccttctt taacttcaat caaatcttta aaacgatctt tatttaaatt
     3241 tacaacatca ataccgatta aatgataatc cttttcattc gcacccataa tcatttgctt
     3301 ttcgttttca agctcaaaat ctatataaaa atctatatct tttaatccca caaaacctat
     3361 aaaaccagct actaagccag ctttttccaa ttcttcttcg ctcgcatcga ctagttcaag
     3421 ggcactgcaa gcattttgag ccttgatttc ttgcaaatca tcacttcctc ttataaaaaa
     3481 cacaactaat ttgctttcat tttcataaat agcttttttt accactgctt taatcgtata
     3541 aaaagcatta attttaaaaa attgtgctaa agaatctata gttttaatat ttggagtgtg
     3601 aaatttactt gcataatttg cttcaggacg ctcatcttga caagtttttt tagctctttt
     3661 tgcagcttca acattagccg cataatcaca attttcacaa attaaaatat catcttcccc
     3721 attttttgcc aaaaccataa attccttaga accacttcca ccaatagccc cactatcagc
     3781 ttcaactgct ctaaaatcaa gccccattct ttgtaaaatt tgagaataag ttttatacat
     3841 aagctcaaac tcacgcccta aatcttcttc attagcatga aaactatatc catctttcat
     3901 tagaaattca cgacatctta aaagcccaaa tctaggcctt gcttcatcac gaaatttaag
     3961 tccaatttga tataagtgca aaggaagttg tttatagctt gtgattttgt tttttaccaa
     4021 agaaagcata gcttcttcat gtgttggacc taaaacaaat tcattttctt ttctgtcttt
     4081 aaaacgcaaa agttcttttc caaaaacatt ataacgccca ctttcttgcc acaaacttgc
     4141 aggagtgata aaactaagat ttacttcttg tgctccagcc ttatccattt cttctttaac
     4201 tatattttta atcttgtcta aaactctttt tcccaaaggc aagaaattat aaagtccgct
     4261 accaatttgt tctacaaaac ccgcacgcgt taaaaaaata tgactaggta aactcgcatc
     4321 ttttggcgct tcttttaaac ttggtgcata aaatttagta aatctcatca ttattctcca
     4381 tatcaaattc acatttatat tgatttaaac cttcaagatt attttgcaaa tcaaaaacat
     4441 aacgcatagc attaatcact gtatcgcttt gcattttacc ttgtaaatgt ttcaaattta
     4501 cagtaggcgt gtgtaaaaaa gccttaaaaa cttgatgaat caactttcta gcctcttctt
     4561 tatcagattt tttcaaatat ccttttttta acgcaatttc aagttgttta tctgcatatt
     4621 ctttagcttg caagcgtata gctttgataa taggcatcaa agccaaatcg tttaaatacc
     4681 taaaaaattc acttgtttca cgacctatta tcccataagc catacgagct tcttgttctc
     4741 ttagtgctaa atttttttga accacaattt caagatcatc tacagcaaaa acagatatat
     4801 tttcattttc attgatatca atatcccttg gaactgcaat atcaaaaaaa taccttttat
     4861 aagaaagttc ttctattaaa gaatttgtaa taatagcatt tggtgcattg gtagctgaga
     4921 aaaaaaactc gtattgattt aaatattttt ttaaattttc taaactatca tattcgctta
     4981 aaacaccaag tctctcacac aaatctttag ctttttgtaa atcacgattt aaaataatca
     5041 ccttagcacc cgcagcaatt aaatgttttg ccgcaagttc tcccatctct ccagctccaa
     5101 taacaacagc ttttttttgc gttaaatctg caagttcttt tgcttttgcc acggcaacgc
     5161 tagctacaga aatagaattt ttagaaattt gagtttcatt gcgtacctta gcagcacatt
     5221 taaaagcact atgtactgct cttgaaaggt gtactccaca aaaattattt tttacagcaa
     5281 aagcaaaggc atcttttaat tgtcctgcta tttgagtttc tccaaccacc aaactatcca
     5341 aagaacttgc tacagaaaaa agatggtgga ttgctccact atcttcaaaa atatcagctt
     5401 tttcaagtaa aatatcttta tcaacatcac aaagtaaagc caaagattta acaataaact
     5461 ccgcacaggc catttttaca aaagcaacaa tttcaacacg attgcaagta cttataacca
     5521 aacattcttc aatattttca tgagtgctaa tgatttttaa aaactcactt tttttagctt
     5581 cattggaaaa gcttaacttt tcccttaagg caatatctgt atttttatga gtaaaagata
     5641 tacaataata cattaaaatt ccctatctat catagcttta ataatatcat taagcttgtt
     5701 attatcatat ttttcaattg cttttctagc cttttttgca taagttttag cttctaaaat
     5761 agctttttct aaagcttttt gttcttcaaa tttagttttt agccattctt tttcattttc
     5821 atttaaatct tttttaaata aagtctgcaa atatatccta tcttgctctt gtaaattttc
     5881 ataaagataa atataaggca aggtagtttt accctcttta aaatcattca tagcaggttt
     5941 tccaagaatt ttttcatcac tcttaatatc taaaatatca tcaatcatct gaaaagcaag
     6001 tcctaaattt ttaccatatt ctgcaaaatc tttttcatat aatccagcca aaatagctcc
     6061 gcatctagca cttgcttcaa tcaaaacagc tgttttatta tagatcattt tcaaataagc
     6121 ttctttattg atattaaatt tctctcccaa atcaacatcc ataagttcgc ctatagcaag
     6181 ctttacaaca gcatctgaaa taatacttgc aaatctagca tccattttgc ttaattcata
     6241 aaaggctttt gaatacaaaa tatcgcccaa cataagagca ttttttgtac caaattcagc
     6301 attaacagat cttgctccac gccttaattc actctcatcg ataatatcat catgtaataa
     6361 actagcaaga tgtatcaatt ctatagctgc gcaaatttta aaagcaatct cactctcatc
     6421 tgcgatagct aataataatt tagagcgtaa tttctttcct gattttacat ttgaaagcat
     6481 atttaaaata ggttcatagc caagctcttg taaaaactgt tttattaatt catctatttt
     6541 ttgcactatc ttttccttgt taattgctat tattattttc tttgcttgtt aatggtttta
     6601 cctgaggttc gttaaaatta atcataggaa caacctgatt attttgcggt ggattttgta
     6661 aagctttttt tctcggatct aaaaattcta ccattaagcg agattcctta tcttctatat
     6721 aaaccgtaaa agttgccaaa cctttattat aaccactaaa ttctaaaata agtcttgctc
     6781 tatcaatatg tggattagta taatcaggta ttaaagtttg agttacccaa tctaaatttc
     6841 ttcttaaact catcacaaat tgacgcggat atttgcgaaa tttcgaatgt acgatgatat
     6901 tagtattatc aaacaaagtc caataaaaat caaaattttg caccttatct tcatagccta
     6961 tttctttaat ctgcacacta gctctctcat cttttttaag tataaattta taagtataat
     7021 caaaagttgg ttcagatgct aaaacattac taaaaataaa aaaaatacaa attaaacaag
     7081 ggcttatttt aaacaatttt agccttcgtg tcctaaaatt tttgcgccca attctatata
     7141 aatatcattt tgcctttctt ctataaaatc accattttct aatatgaaat tttttacatc
     7201 catttctgtt aaaccttgtt tttccaaaag ttccaccatg gcaatatgat cagcaaaaaa
     7261 ttcctcaaaa actttttcta aggctcctaa atttccattt tgtataattt ctataaattt
     7321 ttcttttgga gttttattaa acatttcatc aaaaaaatcc attaattttc cttgaaaata
     7381 taagtttttg attataaaat tttaatcgtt aaaagtagct aaattaaaat aattaaaatt
     7441 taaattttat ttgcaatgtg taaaatttta gaagttaaat tccgcatgat gcggaattta
     7501 ttatgaatat ggttttgctt gagtggcgta ttttacaccc agatcaaaag ctttagcatt
     7561 tgcatcacga gtttttgcag gaaccatatg aagcatagtt tcttttaaaa catctaaatc
     7621 tatacatttg ctcatataag cagcaattgc aagtgcaaca actgattgag tagccacatt
     7681 tcctacctca tctttagcta tggtaataat agggatttca aaaatttgcc attttttata
     7741 atcttcactt tcaggatgta ctaaatttgg ctctacaact ataatacctc cttcttttac
     7801 acccccacga aaacctttat aacccttatc tgcagtcgaa agcataaaat ctacttcccc
     7861 ttctacagca taaggaaata aaatttcttt atcatcaatg ataatatcca ccttagtagg
     7921 accgccacgc acttgtgaag tataagtaga agccttaaaa gcttgacgac cttctttaat
     7981 ggctgcttct gctaaaattt ctcctgcggt gataacacct tgtccgcctt caccgccaaa
     8041 tcttaattga tatttcattt taaagctcct aaatccacca ttcttttttc tttggctgca
     8101 cgacgtactt cttcataagc gtggcagtat tctggctgag aattatcttc atgtaaaatt
     8161 cctgttggaa atttatcttt tctttcttca aaatccatgc tttcaaattt agctttatcc
     8221 acaacacgat ttttaatcca atcaagcata gctacagctt cgcccatttt gttttttctg
     8281 cctagattga tatgacaatt tgaaaaaaca tctacaaaac tataaccctt atgcgctaaa
     8341 gccttataaa ttaaattttc aagcttatta gcttcgatca cattacccct tgccacaaaa
     8401 gaagctcctg cagctttagt taattcacac gcatcaaaat tagggtcaat atttccaaat
     8461 tgagctgtta ctgtataaaa accttttgga gtggttgggc ttgtttggga attcgtaagt
     8521 ccatagataa agttattgat cacaatgtgg gttaaatcaa tatttctgcg acaaccatgt
     8581 atagtatgat ttccaccaat tgccaaagta tccccatctc cgcttactac aataacatgt
     8641 ttactaggat tggctagttt aatgcctgtt gcataagcta ttgctctacc atgagttgta
     8701 tgaactgtat tgcaatttac ataagaactc attctgccac tacaacctat acccgaaaca
     8761 agacaaacat catccatatt ccaaccaagt ttttctatcg cgcggataat acattttaaa
     8821 acaacaccat cgccacatcc ccaacaccat tgagtaggca ttttatctac tcttagatat
     8881 tcatcataat taaaagccat ttatatattc tcctttacct tagcaataat ttcacttgga
     8941 gtgataggac gaccatttgc acggtgcaaa ctaataaaat cgcgacgcga agttactctt
     9001 tcaatctctt caagatattg tcccatatta agctcgctta ccattacttt tttaaatttg
     9061 cttacaactt cagcgatttt tttctcagcc actggataaa gagtaatcgg acggaaaagc
     9121 cccactttaa tcccttgctc tcttaatctt tgtatagctt cttttgctga acgactcacg
     9181 cttccataag caatgattaa aaattcagca tcatcaagca tatactcttc ataagtacaa
     9241 atatcttctt gattgttttt tattttacct atgagtcttt ccatattttt tttcactata
     9301 actccatctt cagttggaaa acctatatct ccatgatgaa gtcctgtaac atgataacga
     9361 taacctgtaa agaaaggatt taaagttgca ggctcatttt ctcctgctgc ataaggttta
     9421 taatcctttt tatcgccttc aaatttttta cggttatata ctttaatatc ttttaaatca
     9481 ggtaaaaccg ctttaccatt catgtgccct acagtttcat ccataagtaa aaatactgga
     9541 gtcatatatt tttcagctaa attaaacgct ctaatggttt ctgtataagc ttcttcaaga
     9601 cttgcaggag caatagcaat acttgcaaaa tccccatgag ttggtgcttt agcttgaaac
     9661 aaatctcctt gtgctacacg agttggaaga cctgttgaag gaccacctct cataacattt
     9721 acaatcacaa gtggaatttc agcaataaat gcaagtccta tttgctctgc ttttaaagaa
     9781 attcctggac cgctacttgc agtcatggat tttactccac tcattgccgc accaatagcc
     9841 acgctaatac ctgaaatttc atcttccatt tgtataaaag ttccatcatt tgcaggaagc
     9901 atatggctta attcatgagc tatctcacta ctaggagtaa taggataacc tccaaaaaat
     9961 ttacatccac aatcaatcgc agctttggcg attaaaacat tacctgttgc tataacttct
    10021 ctcattattt ttcctatgct aattttttgt atttgttatt ttttacggct acagctctat
    10081 ctttagcctc agcagtaagt ttggcaaatt taaattcatc tctttttgcc accataatag
    10141 caaaatcagg gcaatgtgtc tcacactcgg tacagcctat acaggattca gggtgtacca
    10201 cctctatcat ttgtcctaaa accgcatgca catcatcgcg catagctaaa accccagcgg
    10261 ggcaatagct aacacaaata ttgcatgctt tacatctatg ctcatctacc caaacagggg
    10321 tatcttttgg agctgtcata ctcatgtttt ttcctttatt aacctaatat tttttgaatt
    10381 tcttcaccaa tcaaagccgg agaatccacc acatgaattc catagctttt taaagcttct
    10441 tttttagctg cagcgctttc atcagcactt cctactatgg cacctgcatg ccccattctt
    10501 ttgcctttag gagcagttgc acctgcaatg aatgctacca caggtttgct aatattttct
    10561 ttaataaatt tagccgcttc cacttccaaa ctaccaccaa tttcacctat cattacaata
    10621 gctttagttt catcatcttt ttggaattca cttaaaagtt ctttataagc aagacctatg
    10681 ataggatcac caccaattcc tactgcagta gaaattccat aaccaccttg aactacctga
    10741 ttagcagctt cataagttaa agttccactt tttgaaataa gccccacgca acctttttta
    10801 aaaataaaac ttggcataat acctaactta cattcttcag aagtgataat acctggacaa
    10861 tttggtccaa tgattttcat acccttttta ttagcatatt gcttagcaaa catcatatcc
    10921 tttacaggcg tatgctcggt gattacaact gcaagcttaa tacccgcatc agctgcttca
    10981 atcacgctat cacccacagc aaaagcaggg acaaagatca agctcacatc agcctttgtt
    11041 gctttaaccg catctgcaac ggtatcaaaa actggtttac ctaaatgagt ttgtccgcct
    11101 ttatgagggg tgacacctcc aactatattt gtaccataag ccatgcattg ctcagcgtga
    11161 aaagttgctt ctttacctgt aaaaccttga actattactt ttgtattttt attaaccaat
    11221 atactcattt tccatcctta tcctactaaa ctttttacaa gctctgcacc gtttttaaga
    11281 ttggttgctg ctttgatatt tttaagattt gaattatcta aaattgtctt tgcttctgct
    11341 gcgttagtgc catcaagacg cactacaatt ggaatattta cctcaacatt cttagtagct
    11401 tctaaaattc catttgctat cctatcacaa cgaacaatac caccaaagat attgataaat
    11461 ataactttta catttttatc tcttaaaata atttcaaaag cctttgcaac agtttctgga
    11521 gaagctcccc cacctacatc taagaaattt gcaggttttg caccactata attaataata
    11581 tccatagttg ccattgctag acccgcacca tttaccatac aagctacatc tccatctaat
    11641 ttcacatagc ttaagccaaa ttcagccgct tctctttcag caggattttc ttcagtagta
    11701 tctctaagtt cagcaatttc aggatgacga taaagcgcac tatcatcaaa actgcatttt
    11761 gcatcaaggg cataaaaatc cccttctgca gttttaatta aaggattaat ttcaagcata
    11821 ttcatatctt tatccatgta aagcttataa agtttagcta tcatagaaat gagttttttg
    11881 ccttcatctt tatcaagtcc caaaactctc gctacttcaa gtccatgaaa cattttaaat
    11941 ccaatttgtg gatcaatacc tacttttgca attttttcag gactttcttt ggctactttt
    12001 tctatatcca tccctccttc acttgaagcg ataatggtaa tttgctctgc cattctatta
    12061 aacaaaatag ccaaataata ctcttttact atattagcac cactttctat ataaagtttt
    12121 tgcacaagtt tgccttcagg tcctgtttga tgagttacta aattcattcc taaaatttta
    12181 cttgcataat cttttacctc atctaaattc ttagcgattt taacaccacc accaagacca
    12241 cggcctcctg catgaatttg agctttaact gcccaaacac taccgcctaa ttctttagca
    12301 ttagccacag cttcatctac gctaaatgca acttttccct ttaaggtagg gatgccattg
    12361 tctacaaaaa ttgcttttgc ttgatactca tgtatgttca tttattctcc tttatattga
    12421 tatttgatta aagatttttc taatttgtct ttttcttgca aactaagatc cattttcatg
    12481 atttcaatca caccttcaag tcctaatctt gccataactc ccaaggcttt gttttgcact
    12541 ccaaattctc catgtaaaat cacactcata ggtaaaaact cgccacttct tatagactca
    12601 agcattctta tacaagcact agcaggggct aaataagctg aagttttaag atgtttgatt
    12661 actttagctc cacctgtttt aacttcattt tctaaatcct caaattcttc ttcatttaaa
    12721 aattcgctta tatttttatt tttaacactt gcgtaagatt ttaccaaaac catatcatca
    12781 ttatgaaaac caataagtct tgtatccact cttgacattt tgacattaag ttttttggca
    12841 agttcatact taaatcttgc attgtctaaa acacccgcca tggctataat tttctttgat
    12901 aaaaaaatcc cgctttcata aagagtatta agtagaaaat ccacaggatt agttaaaata
    12961 ataaaaagcg gatcttctgt aaaatcttta atttttttag cacaatcaag cataatgctt
    13021 gtatttaact gaagcaattc ttctctactt tgcccatctt ttctagcaaa acctgcacta
    13081 aaaagcacta tatctgaatt tttggtatga gtataatctt tagtgcaaag taaatctata
    13141 tttaaattta aagcagctat gctttgagta agctctagtt cttttgcgta aagcaaatcc
    13201 tcgttaatat ctactaaaac aatttcattt gctatttctc ttaaaatcaa agcataagct
    13261 acgcttgaac ctacattgcc agcccctata acagtgattt tcatctttgt cctatttttt
    13321 ctaaaatagc gttaaaagtt gcacttggac gcataatttt atttgctttt tcatcatcaa
    13381 atttataata cccacccaaa tccactttca caccttgtgc atcgttaaat tcggctctga
    13441 ttttttcttc attagaagaa agctctaggg caatatcttt aaaaaagctt tgaagctcca
    13501 tatcacttgc ctgtcttgct aaatgatttg caaaatacat tgctaaataa aaatgacttg
    13561 ttctattatc atcttctttg acttttcttg atggagcttt attattttca agccattcgc
    13621 ctatagcctc atcaagacat tctgctaaaa ccttagcttt atgattgcca cacttatttg
    13681 cataaaattc caaacttgct tgcaaagcca aaaattcacc caaactatcc caacgcagat
    13741 gattttcttc gactaattgt tctacttgtt taggtgctga accccctgct cctgtttcaa
    13801 acatagctcc accatttaac ataggcacaa cagaaagcat ttttgcactt gttccaagct
    13861 ctaaaatagg aaaaagatcg gttaaataat cccttaaaac attacccgtg atagaaataa
    13921 catctttacc ttctcggatt aactctaaac ttcttaaaca agcttctttt ggagttaaaa
    13981 tggctacatt tttacccttt tcttttaaac gattttgtac caaagttatc atgattttat
    14041 tactagctct tttgctatct aaccaaaaaa tagcttcggc tccactaagt tctgatcttt
    14101 ctatacctaa atcaatccaa tttaacactg catcaaattt agcctgatta gctctataaa
    14161 tatcaccttt tctaacctta tgttctaata aaactttacc gttagaaact attttaaaag
    14221 ttccttcttc tttagccaca aaggttttat cgtgcgatcc atattcttga gcttttttag
    14281 ccattaaacc tacattagat acactgccaa gttttgaagg atttaaagta ccatttttat
    14341 gcaaatcttc aataactgcc tcataaatag ttgcgtaagt ttgatcagga attacagcat
    14401 ttgtgtcctt ttccttacct tccttatccc acaatcttgc gccattttta agcattgcag
    14461 gcatagaagc atcaacgata acatcgcttg gaacatgaag atttgtaatg cctttatctg
    14521 aatttaccat agaaatatct gcagatttag ctaaaatttc attgtatttt tttaaaattt
    14581 catctttttt gcttgaattt tcgatcttac ttaaaagctc acttaaacca ttatttggat
    14641 taatgcctaa tttttcaaat tcatcttgaa attcgataaa taattcttta aaaaatactt
    14701 ttaccgcata accaaaaagt ataggatcac ttactttcat cattgtagct tttaaatgca
    14761 aagaaaaaag cacatcatca tctttgcttg ctttaatttc ttttgcataa aattcctgaa
    14821 gtttttgcac atccataaaa gtagcgtcta aaatttcatt tttttcaagt tttaagccct
    14881 cttttaaaat ttctttttta ccatcaacgc ttgtaaattc tatattagcc acacaatctt
    14941 gatcgattaa aaccgctttt tcattagaga aaaaatcccc ttctttcata taagaaacac
    15001 gagtttttga gtttggatta aactcaacca cacgataagg attgtttttt gcataatctt
    15061 ttaccgcttt tgttgaacga cgatctgaat ttccttgtct taatacagga ttaaccgctg
    15121 aacctaaaac tttttgatat tttgttttaa tttgcaattc ttcatcattt tttggctcat
    15181 ctgggtaatt tggtaacatg taacccttat cttgcaattc tttaatcgcc gccttaagct
    15241 gaggaataga agctgaaata tttggggttt taataagatt tgcatccgat cttttgacaa
    15301 gctcacctaa aagttctaaa gcatcttcac atctttgttc ctcttttaaa tactcactaa
    15361 aagtagctaa aatccttcca gacaaagaaa tatccgaggt ttttactcct atatgtgccc
    15421 tacttaaaaa agctttcact ataggcaaaa acgaataagt cgcaagagct ggagactcat
    15481 ctgttaaggt ataagtaatt tgcattttta gtcctttaaa atacttattt ttattttcat
    15541 ttttaagtat attacaaata aaaaaaaatg caagagtaag tttaaagttt gttttagttt
    15601 tcaaacaaac tttaaatatt tttaattaag taaattagca ggaagttgta tgatattttt
    15661 aataagatta aaaggggttt ttagagtatc tgttaaaatt tcggtatgaa atttagggtc
    15721 atctatactt ccatctattt ttaaatttgt gctaatttct tgatttttac ctaaaattac
    15781 ataatttaaa attggaacct tggatatagc ttctgaagct gattttaaag ttttaagctc
    15841 taaactaaaa tccactgtat ttaatcttaa atttgctgat cctaaaccat atatatctac
    15901 actatcacca tttaaattaa tagccgaaac acttaaaaga tctttttttc tattaaaaat
    15961 aatctttcca tcatgtaagc ttaaaccttt ttgattaaaa gttggagatt taaacatcaa
    16021 taaacttggt acagtatcga taaaggaaat aagctgattt atacctttta aatccttcac
    16081 ataagtattt ttaaaatcga tctgtccatc aaaatactcc aatccacttc cttttatact
    16141 taagttaaac actccatctt gaacagcttg tttttgtaaa aactcattta aataattatc
    16201 atcaatattg ctaacgttta aatttaaatc attagaagaa taataaagat caaattttgc
    16261 atttcctcta gaacctttaa gatctaaagc attgcctttt aaatcagctt ctactctatc
    16321 aaaagccaaa gttttattag aatctgccaa aattaaagct acatttgctc caccaaaact
    16381 aatattttgg gtattagtag caatatcaaa tgttgaattt gaagagttgg aatgttttct
    16441 ataaatataa cttaaatttt ttaaatgaat ttctttatta tcagaactta ttttagcact
    16501 tgctgtatca ctttgagtat gaatttccat aatgccctta ttttttacaa tatcaaagct
    16561 atcattttca taaggagttt gaccgttgat aagtaaatta tttttaaaat aagcatcatt
    16621 aacacttgca ttaaaatctt caaaatttaa agttttataa taaacatttt tagcatcgat
    16681 aaacccaagc tttttaagta atggagaaaa tgaaaataaa atcttaggat tattaagatt
    16741 agcctcaagt ccatctttaa aatttaaaat caaattccac tgaggaatgc taatgttaac
    16801 attttgcgaa taatctaatt ttacttctac attttgattt tttaaatcta aaagctctcc
    16861 attgtcaaaa taaagccttg aaatctgagt attgaaattt ccttgctgtt tttgtaagtc
    16921 aaatttagca ttaaaatcag cttctaaaaa gccattttta acactggcat tttctatatt
    16981 taaatcattt tgatttaatt ttacaaatgc ttttataata ttaaaatcag ccaaagaaat
    17041 actagcattc tctaaagcta aaataccact ataagaaatt tcacccttat catgaaaatc
    17101 aattttaagc tccaaatcac ttttaatttt tccgcttttt tgataaaaag gtagtgaaaa
    17161 atgataatcc tctaaagctt tagcaagttt ttcgtcaaat tttagattat cagacttaat
    17221 gcgcaaataa atcccaactt ttttttcatc aaacaaatca tatagataaa ccttactaga
    17281 acttaaatca gcaccattat agaaagcttt attaaagaca aaatcgagct tttgtttgtt
    17341 taaatttaaa tcgagttttg gaatttcaat agcattcatt ttatcatcca agcgaacttt
    17401 gacattatta acataacctg atgcactaat attgtctaaa taataattat ctttagtaaa
    17461 atctataaag ccccgcaaat aatctaaatg ataaaattct cccttagccc tatatgctac
    17521 ccaaagattt aaactctgcg gaagttctat tcttttatta actcttttaa aaatttccgt
    17581 aatatttcta atatttaaat cttctatttt ataagctaaa tttttatctt tataagagat
    17641 acttgcgtta aagtcaagca attctccact tgctctacct tgaaaataat aaaactcgct
    17701 cttagtattg atac
//
LOCUS       DARGED010000023        16827 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.023, whole genome shotgun sequence.
ACCESSION   DARGED010000023 DARGED010000000
VERSION     DARGED010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.023"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..337
                     /locus_tag="SFZ84_000623"
     CDS             <1..337
                     /locus_tag="SFZ84_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8202767.1"
                     /translation="LFVFFTTWCTPCIAEIPHLNKLQEKYNNDFNIVGVLLEDKSNDE
                     IQKFIEQHKISYKVANGENNYLLAKALGGINGIPTMFLYNKHSKLINQYLGLIPEEML
                     EIDIQKAIL"
     gene            337..1203
                     /gene="ftsY"
                     /locus_tag="SFZ84_000624"
     CDS             337..1203
                     /gene="ftsY"
                     /locus_tag="SFZ84_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG8202768.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1203..2543
                     /gene="radA"
                     /locus_tag="SFZ84_000625"
     CDS             1203..2543
                     /gene="radA"
                     /locus_tag="SFZ84_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG8202769.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2612..3292
                     /locus_tag="SFZ84_000626"
     CDS             2612..3292
                     /locus_tag="SFZ84_000626"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG8202770.1"
                     /translation="MKDLFLFSSLLDTSHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3289..3480
                     /locus_tag="SFZ84_000627"
     CDS             3289..3480
                     /locus_tag="SFZ84_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202771.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3502..4350)
                     /gene="metF"
                     /locus_tag="SFZ84_000628"
     CDS             complement(3502..4350)
                     /gene="metF"
                     /locus_tag="SFZ84_000628"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG8202772.1"
                     /translation="MCNFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHV"
     gene            complement(4360..6624)
                     /gene="metE"
                     /locus_tag="SFZ84_000629"
     CDS             complement(4360..6624)
                     /gene="metE"
                     /locus_tag="SFZ84_000629"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG8202773.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQNLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIHF
                     KTEVGPGVYDIHSPRVPSIEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVMATQKIREQL"
     gene            complement(6636..7406)
                     /locus_tag="SFZ84_000630"
     CDS             complement(6636..7406)
                     /locus_tag="SFZ84_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8202774.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRNLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7417..8409)
                     /locus_tag="SFZ84_000631"
     CDS             complement(7417..8409)
                     /locus_tag="SFZ84_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG8202775.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGTKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKTFAQALDLPSNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVANIYHSDLIEKFSFA"
     gene            complement(8720..9214)
                     /gene="luxS"
                     /locus_tag="SFZ84_000632"
     CDS             complement(8720..9214)
                     /gene="luxS"
                     /locus_tag="SFZ84_000632"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG8202776.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9329..10747
                     /gene="gatB"
                     /locus_tag="SFZ84_000633"
     CDS             9329..10747
                     /gene="gatB"
                     /locus_tag="SFZ84_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG8202777.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKEKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            10744..11640
                     /locus_tag="SFZ84_000634"
     CDS             10744..11640
                     /locus_tag="SFZ84_000634"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG8202778.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            11650..12828
                     /locus_tag="SFZ84_000635"
     CDS             11650..12828
                     /locus_tag="SFZ84_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8202779.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQFFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILET
                     "
     gene            complement(12825..14351)
                     /locus_tag="SFZ84_000636"
     CDS             complement(12825..14351)
                     /locus_tag="SFZ84_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG8202780.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRSTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            14493..15299
                     /locus_tag="SFZ84_000637"
     CDS             14493..15299
                     /locus_tag="SFZ84_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEG8202781.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYENTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSWGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(15296..16672)
                     /locus_tag="SFZ84_000638"
     CDS             complement(15296..16672)
                     /locus_tag="SFZ84_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8202782.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIIAGIVLGYIDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVAQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVTAIGILLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         5634 a         2439 c         2847 g         5907 t
ORIGIN      
        1 tttgtttgta ttttttacca cttggtgtac cccttgcatt gctgaaatcc ctcatcttaa
       61 taaattacaa gaaaagtata ataatgattt taatatagtt ggggttttgt tagaagataa
      121 atctaacgat gagattcaaa aatttataga acagcataaa atatcttata aagtcgctaa
      181 tggtgaaaat aactatcttt tagctaaagc tttaggtggg ataaatggaa ttcctaccat
      241 gtttctttac aataagcatt ctaaattgat taatcagtat ttagggctta ttcctgaaga
      301 aatgctagaa atcgatatac aaaaggctat actttaatgt ttaatttttt taaaaaagga
      361 cttgcaaaaa ctcttgaaaa tattgttggg attaaaggag agaataaaaa gataaccaaa
      421 gatttgcttg aagaaatttt gcttgaagca gatgtaagtt atgaaatagt tgaagagata
      481 atttattatt taccacctca aaatgaagta aaaaaagaag atttaaagcg tgttatgggt
      541 tcttattttc tttatgaaaa aaaagaaacc aatcaagaaa aaccttttgt agagcttatt
      601 ttaggagtaa atggagcagg aaaaacaaca agtattgcca aacttgctta tttatataaa
      661 aaccaaaatc aaaaagtgat tttaggagcg tgtgatactt ttagagcagg tgcgattgaa
      721 caattaaaac tttgggcgca aaaagtggat gtagatatag ttttaactgc acaagggcat
      781 gatccttcag cggttgcttt tgataccatt tctaaagcaa aagcaaagga ttttgataga
      841 gttattatcg atacagcagg gcgtttgcaa aatcaaaaaa atttagccca tgagcttgaa
      901 aaaattgtga gaatttcaaa caaagcttta gaaggtgcac cccatagaaa aattttagtt
      961 ttagatggaa cacagggaaa tgctggaatt ttacaagcta aagcttttaa tgagcttgta
     1021 aaacttgatg gtgtgattat cacaaagctt gatgggacag ctaaaggggg tgcacttttt
     1081 agtatagcaa gagagcttga gcttcctatt ttttatgtag gcgtgggtga gcaaatgacg
     1141 gatttgcaag aatttaatgc aagtgcttat ttagatactt tattagatcc tatttttgaa
     1201 taatggcaaa aaataaagca ctttttgaat gtcaagcttg tggaaatcaa caaagcaaat
     1261 ggcttggaaa atgtcctgat tgtggagctt gggatagttt tgtagaatta aaagctgagc
     1321 aaattaaagt tttaaaagag cttgcgcaag ttagtatgaa aacaagtgaa gctgtttgta
     1381 ttgaagatgt ggaattagaa cattttacaa gatatagcac agatgataat gagcttgatt
     1441 tggttttagg aggagggctt gttgaaggtt ctttagtgct tataggcgga agtccaggtg
     1501 tgggaaaatc tacgcttttg ttaaaaattg cttcaaattt agccaaacag ggtaaaaaag
     1561 tgctttatgt cagtggcgaa gaaagtaaag ctcagattaa attaagagct gatcgccttg
     1621 aggccaatac tccgaattta tttttactta ctgaactttg ccttgaaaat attttagaag
     1681 aattacataa aaaggattat agtattctta tcattgattc tatacaaact ctatattcaa
     1741 ataaagtcac ttcagcagca ggaagcatca ctcaggtgcg tgagattact ttcgaactta
     1801 tgcgtgttag caaggcttat aatatcagta cttttatcat agggcatatt actaaagaag
     1861 gtgctatagc agggcctagg gttcttgagc atatggtaga tgtggtgctt tattttgaag
     1921 gagatgccac taaagaaatc agacttttaa gaggctttaa aaatcgtttt ggtggaacga
     1981 atgaagtagg tatttttgag atgactgcta agggtttgat tagcgcaaaa gatttagcaa
     2041 atcgtttttt tactcgtgga aaggctattt caggaagtgc tttaggggtt gtgatggaag
     2101 gatctcgtgc tttggtttta gaagttcaag ctttagtgtg tgaaagttct tatccaaaac
     2161 gcagcgctac aggatatgaa aaaaatcgct tagatatgct tttggctttg cttgaaagaa
     2221 agcttgaaat tcctttaggg cattatgatg tatttgtaaa tattagcggt ggggtaaaag
     2281 taagtgaaac tgctgcggat ttggctgtgg ttgctgcgat tatttcaagt tttaaaaatc
     2341 gccctttgag caaagatagt atttttatag gagagcttag tttaaatgga gaaattagag
     2401 aggtttttag ccttgatacg cgtttaaaag aagctaaaat gcaaaaattt aaaaatgcta
     2461 ttgttccttc taagcctttg gaagatatag gacttaagtg ttttgttgct aaagaacttt
     2521 cacaagtttt agaatggatg taaattttca ttaaaatata agtaagattt tgctagaatt
     2581 ccgagtttag aataaaattt ttgaggaaac catgaaagat ttatttttat ttagctcttt
     2641 gcttgataca agtcatactt tttcttattt ttttcacata ggtttggtag ctttaattgc
     2701 tgttatagtg gctatgatgg ctactcgttc tatgcaactt gttccacgcg gtatgcaaaa
     2761 tttaggtgag gcttttttag agggagtttt atctatgggt agagatacca tgggaagtga
     2821 aaaaggtgca agaaaatatc ttcctttggt tgcaactttg gggattatag tgttttttag
     2881 taatattata ggtataatac ctggttttca cgctccaact gcaagtttaa atttgacttt
     2941 gtccttagct attatagttt ttgtatatta tcattttgag ggtattaggg cacaaggttt
     3001 tgtaaagtat tttgctcatt tcatgggacc tattaaactt ttagctcctt tgatgtttcc
     3061 tatagagata gtctctcatc tttctcgcgt ggtttctttg tccttccgtt tgtttggaaa
     3121 tattaaaggc gacgatttat ttttaatggt aattttagct ttagttcctt atatagctcc
     3181 acttcctgct tatgtgcttt taacttttat ggcattttta caagctttta tttttatgat
     3241 tttaacttat gtatatttag cgggtgcaac tgttgttgag gaaggtcatt gatctatatt
     3301 ttagaatttt tcaaaggtgc atctttagct ttaatgcttt ttggtgcact tttcttcttt
     3361 tttaaatata attctttttt ctatctttgc ttgggtatta taccaggttt gcttttatct
     3421 ttaatttttg ttttacttat agaaaaccat aagctaaaaa atgaaaataa gttaagataa
     3481 aagcaaaaaa tagtttattt tctaaacatg aagctcttct ttaagcaaat gctttacagc
     3541 ttcataaatt ttaatagccg ctttggattt attcatagta taaagatgaa ttccatctac
     3601 accacttgtg attaaatcga caatttgatc gcaagcatac gcgatacctg catcttctaa
     3661 agccaaagca ttattttcat atttttctaa aattttaaca aatttaggag ggattttagc
     3721 tccgcaaagt tgagaaattt ttaaaacctg tcttttgtta gtaataggca taatacctgc
     3781 gtaaataggt atgtcaatac ctgctaaagc acaattttgt ttaaaagtat aaaaatcttc
     3841 attatcgtaa aaaagttgag taatgagctt gtctgttcct gcatttactt tagttttaag
     3901 atggtgtata tcctcgatga aatttttaga ttcattatgt ttttcaggat agcatgcggc
     3961 ataaatttca aagtattctt gtttttttat gaaagaaatt aaatcactag cataagaaaa
     4021 atctttgctt ttttctaaat tttcacatat atcgcctctt agagcaagaa tttgattaag
     4081 atttttttct ttgcattttt gaagtatctg agtgattttt tctttactag aatggatgca
     4141 aggtaaatgt actatgctag gaatttgata ttcttcctgg attaagcttg caacttctaa
     4201 agtattttgt gagttaatag agcctccagc tccaaaggtt acgctgataa aattagggct
     4261 taattgccct aaatcatcta agatagcatg aagatttttg atattttcat cctttcttgg
     4321 tggaaaaact tcaaaagaaa aattacacat aaaaactcct tataattgtt ctcgtatttt
     4381 ttgcgtagcc ataactaaat ttttaagaga ggctataact tcttcataag cccttgtttt
     4441 aagtccgcag tctggattga tccaaatttg ctccttaggt aatttgttta aaattttttc
     4501 tatggttaag cttagctctt ctatgcttgg aactctaggg ctatgtatat cataaactcc
     4561 tggtcctact tcagttttaa aatgaatagc ttttagggta tctaaaagac ttaagtttga
     4621 tcttgaagct tcaaaagaaa tcacatcagc atccatagcg tcaatttctt ttaagatatc
     4681 actaaattca ctataacaca tatgagtgtg aatttgagtt ttagctttta ccccgctatg
     4741 cacaagatta aaagcaggaa tagcccaatc taaatactca ctatgccaat cactttttct
     4801 taaaggtagt ttttcacgca aagccgcttc atcaatttgt atgattttta tacctgcatt
     4861 ttcaagatct aatacttcat ctcttatagc taaggcaatt tgctcagtac tttcttttag
     4921 actaatgtct tctcttggaa aggaccaatt aagtatagtt acaggcccag ttagcatgcc
     4981 ttttacgatt ttttgactta aattttgtgc aaatttagac caagctaagg taataggctt
     5041 tatgcgcgat acatcacccc aaatcacagg aggtttaacg caccttgtgc catagctttg
     5101 cacccaacca ttttgagtaa ataaaaagcc ctttagattc tctccaaaat actccaccat
     5161 atcatttctt tcaaattctc catgcactaa aacatcaagt cctatttctt cttgaatttg
     5221 tatgcattct ttgatttttt gttggttaaa ttcagtgtag ttttgagctg aaattttttc
     5281 ttgcttaaag gcaaggcgat tagatcttac atcagcactt tgaggaaagg aacctatggt
     5341 tgtggttggt aaaagaggga gttttaaaaa ttctttttgg attaaggcgc gttctttaaa
     5401 actaggcgtt ctggtaaaat cttctttttt taaagcctta agccttgctt tgactttttc
     5461 atctaaacgc tctgggatat ttttaaaaag ctcttgattg gctctaaaga gcggattttc
     5521 ttcgctagaa tttaagattt cttttaaatc tttaagttct tgaagttttt ctttggcaaa
     5581 ggaaaaaagt ttaagatagt ttgaatctaa tttgctttca aattcagtgc tataaggcac
     5641 atgtaaaagt gagcaagaag tgtttaagat gatattttgt gtatattttt gaagctcttt
     5701 aataagcttt aggcttttag cataatcatt agtatagata tttttgccat taataagacc
     5761 tgcaaaaagg attttatctt tagcaaagcc gtatttttga actaaggcta agctttgttt
     5821 accttcgata aaatcaagac ccaaagcatc aaatttgctt tctaaaagtt taggataaat
     5881 atctcttaag tctccaaaat agctttgaag taaaatttta agatcttttt tgtgatttaa
     5941 aagttcttgg taaaattctt caaacaaagc gatatcttcc ttgcttaaat cataaaccaa
     6001 ataaggctca tcaagttcaa gccatgtcac tttaagttca tttagtttat caaaaagctc
     6061 tatgtaagcg tttaaaagct tttctttggc gagtttttga gttttttcat ctttaaaggc
     6121 aatgagctta aaaagtgtga aaatgcctat taaaacaggc ttgctttcta tgccaagctc
     6181 tttagcttcg agatattctt taaaaatttt atcccctgtt aaagctataa tatcagcatt
     6241 atcgcactca ggcaccaaat aatgataatt tgtattgaac cattttttca ttgctaaggc
     6301 tgtaacatct ccattttctc cttgataacc tcgactttga gcaaagtatt catctaaagc
     6361 atctaaattt aaatttttat actttgtatg aacaatgtta aaaagcacag ctgcatctaa
     6421 gacattatca taaagtgaaa aatcattact agggataaaa tcaatgccag ctttttgaat
     6481 ttcttgccag tgtctaatcc ttaaatcctt agcactcttt aaaagctcct cttttgaact
     6541 ttggttttta aagtattttt caatagcaaa ttttaattct ctatttgcac ctattcttgg
     6601 ataagaaatg attgaatttt tcatatttgt tctccttaaa atgtagggat taaagcaccc
     6661 tgatattttt cttctataaa ttttttaact tcatcgcttt gcaaggcctt tactagggct
     6721 ttgattttag gaaggttttc attaccttct ttaacggcga tgatattgcc atattcacta
     6781 tatttacttt ctgtataaag cccatctttt acagggttta aacctgctaa aatagcaaaa
     6841 ttgctattaa taagagaata atctacatca tttaaattcc ttgtaagttg agcgtctttt
     6901 aactctacaa atttaagctt cttaggattt ttagtgatat ctaaaggagt gatgagctca
     6961 ttatccttaa cttctataag tcctttgctt gctacaatgc gtaaagcacg gctttcattt
     7021 gtaggattat tgggtataga aatgctttgt ccttcctctg ggttaaattc tttatatttt
     7081 tttgaataca ctgccatagg ttctatatgg atactggcaa cttttacaag atgggtgcct
     7141 tgcctttgat tgaattcttt taaataaggt tcatgctgaa aataattagc atctaactca
     7201 ccattttcaa ccattacatt agggattacc ccatcattaa attcataaat ttttaaatca
     7261 taaccttgtt tttgaagtgc tgattttata aatcttaaaa tatctgcatg aggtgttata
     7321 gaagagccaa ctttaagttc ttcatttgcc catgcaaaac cggtaaaaag agtagcgacg
     7381 caaaaagctt tagtaaataa agtcattttt tctcctttat gcaaaactaa atttttctat
     7441 caagtcacta tgataaatat ttgctacatc aggatgagag cgtatcattc ttttaaaata
     7501 attacttgca acatttctta aaagtggatt tttaggatca gtatccacac ctttgctttc
     7561 tttggcaagc tctggattta acttaaaaat aggtatatcc ttatcaagtt gcaccccaag
     7621 aaaataagct atgctaaagc gttcttttgg gcttaaattc acgcggtgaa tagtagcttt
     7681 taaatagcca ttggtagcta gttctaaaaa ttctcctata ttaactacaa cgctattttc
     7741 aagtgggggt atactaagcc atttaccatc tataaaagct tcaagtccac tttgtttttc
     7801 ttgaaaaaca aaagtgataa gcccaccatc tttatgtgaa cctacgcctt gagtgatatt
     7861 ttttgagctt tttggataat gtatgatttt acaatgttcg taagaatttt ctccataaag
     7921 tttatcaaaa gcattgctag gtagatcaag agcttgagca aaggttttta aaagctttaa
     7981 acaagctttt ttggtttgtt tgtgccaagt taagaaagtt tttttaagtt ctggaatttc
     8041 actaggccaa agattaggac cttctagtct ttgccataag ggtgagttta aattccagtt
     8101 taaagcatct ctttctgtgc ctatatccag ttgttctcta taatccttag ttcctgctgt
     8161 gtattcaaaa ccttcgctag tataacctct aaattgagga gaatgtacca tagaaataag
     8221 ctctttcgaa cttctagaaa gattaaaaaa ttctttgcca agtttgaata atttctcgtt
     8281 taaattttta tctatactgg tattgataag ataaaaaaaa cctattttag aagcaatttc
     8341 tcttaaattt ttaagaaaag tgcttttatc tttttcataa gcttgtaaat caagtatagg
     8401 taaattcatt tttgctcctt aaattaaaat taaggataag aagatatttt gaattaaatt
     8461 ttattagaga aatttttgta agttaagatt ttaaatgagt attttgaaaa aataaacttt
     8521 tttgactttc ttacacatta tatctcctta tccacttttt ggacctttgg aaacataatg
     8581 ttaagccaaa ggacgcacta gatactacac atctcgcaca tcagtttcat tttttctcct
     8641 tttaaaataa taaaatttca aaatcatata taaaaatata ttaattaaag cttaatcgtt
     8701 taaaaaataa agattctttt taagcattct cgagttttaa ttctttgtta ttcattatgc
     8761 taatacctag atttaaaacc ttttgggcaa tttgtttggc ttcatctaaa gaatgcattg
     8821 cgcaagttcc gcattgatag atattaagtt caggaatttt gctttgatcg cttacgctta
     8881 aaacatcttt catagcttct tcccaagctt ttgcaacact tttttcatct ggtgttccaa
     8941 ttaaactcat ataaaaaccc gtgcgacaac ccataggtga aatatcaata atttcaactg
     9001 aatttgaatt aagatgatct ctcataaatc ctgcaaataa atgttctaag gtatgagtac
     9061 ctttttcgct cataatgtct ttatttggta tgcaaaaacg caaatcaaac acgctaatat
     9121 catcaccctt aggtgttttc ataactttag ctaaacgcac agcaggagct ggcattttag
     9181 tatggtcaac tttaaagctg tctaataatg gcattttaac tccttaaata taaattgtct
     9241 aagaattata gcatttaaag ttaatattta aagcctttct aaaagaaaaa aagataaaat
     9301 aaaacattta aaaattcaag gaaattttat gtttgaagta gttataggtc ttgaagttca
     9361 tactcagtta aatacaaaaa caaaaatctt ttgctcatgt gcaacttctt ttggagaagc
     9421 tccaaatacc aatgtttgtc ccacttgttt ggccttacca ggagctttgc ctgttttaaa
     9481 tgaagaggct gtaaaaaaag ctatagcttt tggaaaagct gtcaatgcaa caattaataa
     9541 aaaaagtgtt tttaatcgta agaattattt ttatccagat ttacctaaag cctatcaaat
     9601 ttcacaattt gatatcccta tagtagaaaa gggtgagctt tttatcaatg taaagggtga
     9661 aaataaacgc ataggtatta caagagcaca cttagaagaa gatgcaggta aaaatatcca
     9721 cgaaaataat ttttctaaag tggacttaaa tcgtgcagga actcctttgc ttgagattgt
     9781 cagcgaacct gagcttagaa gtagcgatga ggcagtagct tatcttaaaa aacttcattc
     9841 tattatacgc tttttagaca tttcagatgc aaatatgcaa gaaggaagtt ttagatgcga
     9901 tgcaaatgtt agtataagac ctaagggcga tacaaaactt tatactagag tagagattaa
     9961 aaatcttaat tcttttcgtt ttatccaaaa agctatagaa tatgaggtaa aaagacaaag
    10021 tgaggcttgg gaagatggaa cttacgaaca agaagtagtt caagaaacta gactttttga
    10081 tacgacaaat ttagttacaa gaagtatgcg tggcaaagaa gaagcggcag aatatcgcta
    10141 ttttcctgat cctgatttat tgcctgtttt attaaaagat gagtttttgg atattaaaat
    10201 ccctgaactt cctgatgaga agaaagcacg ctttatagac gagcttggta taaaagaaag
    10261 tgatgctgag gttttaatca gttctttaga aatgagtcgt ttttttgaaa gtcttatttc
    10321 tcaaaattta aatcctaaac tttgtgtaaa ttggttaaat actgaactta tgggactttt
    10381 aaaaggagaa ttgactatag aaaattctcc cgtagatgct caaaagcttg gagttttaat
    10441 taaacgcata gaagatggca ctatcagtgc aaaagcggct aaagatgttt tggcttttgt
    10501 atttgaaaat actagcgtgg aaattgatga agctatagaa aagctaggac ttaaacaagt
    10561 aagtgatgac tcagccatag aagcggtgat tgaacaaatt ttaaatgcaa atgccgataa
    10621 ggttgcagag tataaaagtg gtaaagagaa gctttttgga ttctttgtag gtcaaaccat
    10681 gaaagaaggc aaaggagctt ttaatcctgc aaaagtaaat gaaattttaa aaacaaagct
    10741 tggttgatgc gtatagcggt tattggtgcg ggaaaatggg gcagtgcttt acatctagcc
    10801 ttaaaagaaa atcacaattg ttttatcagt tctttgcatc agcgtgattt agaagatttt
    10861 gttagcataa aagaagcttt agaatgtgaa tatcttgttt ttgctttaag ttctcaaggg
    10921 atgcgtgctt ggcttaaaga aaatttcatc aacaagggac aaaaaatttt aattgcttca
    10981 aaaggcatag aagatcaaag ttgtcaattt ttagatgaaa tttttttaga ttttgtacca
    11041 aaagaaaatt tttgtgtttt aagcggtcct tcttttgctg ctgaagtgat gcaaaaactt
    11101 cctactgctt tgatgattag tgggataaat caagagcttt gtaaaaaatt tgcaagtttt
    11161 ttccctgatt ttattaaaac ttatattgat aatgatgttc gtggtgctga aatttgtggt
    11221 gcttataaga atgttttagc aattgcaagt gggattagtg atgggttaaa acttggtaat
    11281 aatgcaagag cagcactgat ttcaagagga cttatagaaa tgcatcgttt tggtaaattt
    11341 tttggcacta aagaagaaac ttttttagga ttgagtgggg caggggattt gtttttaact
    11401 gcaacgagtg ttttatcaag aaattataga gtgggtttaa aactggcgca aaatcaaaaa
    11461 ttagatagta ttttagccga acttaatgaa gtagcagaag gtgtaaaaac tgcttatgct
    11521 atagaaaaac tagcaaaaat gaaaggaatt tatacaccta ttgtaaatga agtagtggca
    11581 atttttaagg gtaaaagcgt gcaagaagca acgcagaatt tattaaagca aaatgattaa
    11641 ggaaaaatca tgataattaa aaatgcaaaa atttatggag attctttaca agatatagag
    11701 attaaagaag gaaaaattac caatattggt tctaatttac aaggcgaaga aattttagat
    11761 gctaaaggta tgactttact tccatctttt gtggatttgt gtgtgagttt aaaaaacgat
    11821 aaattttctt tagctaattt agagctttta gaaaatgagt gtctaaaagg aggaatttct
    11881 agtatagttt tgcgtgattg catggatttt gatgaagaaa gttttgcttt atttttacaa
    11941 aatttagctc aaagaaagat gcaatttttt tcaagtgtgc gggttaagga tacaaacggc
    12001 aagcttaaaa atttagccac tcttttaaat aaaggtgctt gtgctctaga acttgacagc
    12061 tctttagatg caaatacttt aaaagtaagt tcacaatatg cttttatgaa agactctcca
    12121 atttttgtgc gttgttatga taaggatttt gatgataatg gagtgatgaa tgattgtgaa
    12181 atgagttttg agctagggct tataggcatg agtaaaatcg ctgaaactag ccagatagct
    12241 aaaatgaaag aattggctaa attttataaa aataaagtta tttttgatct tttaagtttg
    12301 aaagattctt tagtattatt agatgaaaag gatttaaaac ttgtaagcat tcatcatctt
    12361 atcaaagatg atagtgcttg tgaagatttt aatacggctg cgaaacttat gccaccttta
    12421 agaagcaaag aagatgtttt ggctttaaga gaggctttaa aagaaggaaa gattagcttt
    12481 ttaacttccc tgcatagtgc aaaatcaatt tctttaaaag atttagcttt tgatgaagcg
    12541 gcttttggaa ttcatagcgt atgcgaattt ataagtcttt gttatacttt tttaatcaaa
    12601 gaaggatttt taaattggca agagctttgt cgatttacaa gtaaaaatcc tagtgaattt
    12661 ttaggtttaa atagtggagt tatagaagtt ggcaaagaag ctaatctagt tctttttgat
    12721 gagaatgaag aaatttttgc tccaaaaagt tctctttatt ctgaggataa actttttgga
    12781 aagattaaaa tgcatataat taaaggaaaa aatattttag aaacttaaat tcccaaagat
    12841 agtttaaatc ctaaaaatac aagtgctgcc ataataccag cggctggtaa agtgataatc
    12901 caagccaatc ctataggctt catcataatc caatttgcgt ttttattata cactcctata
    12961 cccaatatag cacctatgag tatatgggtg gagctaacag gaattccaaa ttgtgtagct
    13021 aagagtataa ctatgcttgc accaagttct gcagaaaatc cagtagtaga gcgtatggtt
    13081 gcaagttttg aacccactgt agtaatcact tctttaccta aaaaccaaag ccctacaact
    13141 agagcaactc caaacatagc taaagcagca aaaggtacag gagaagtcgc gttaattgtg
    13201 ccgtttttta agacatctaa aatcgctgca aaaggaccta tagcattggc tatatcattg
    13261 gctccgtgtg aaaatgcaaa actagaggct gtaaatattt gaaaccatga gaaaattcta
    13321 tcagtagttt tattaagttc tgttttttta acgattttga ctatagcaaa tgttacaaca
    13381 taacttatag ttcctataat tccgataatc caaaagtttt gtaaaatatc taaagtgcta
    13441 acattattta aacctttaaa taaaaacatt gccgaaatga tagcagcagc aatacaagca
    13501 atgattggca tatgagtttt taaaatagag taaatatcta tatctttttc ttgatcctta
    13561 aattccttca ttttatttct atagaaatta ttttcttgtt cttcctcatc taaagctata
    13621 gcggaaagtt ctttgatttg ttcttcttgg gattttgttt ttaaatttaa aaagtattct
    13681 tctttgaatt tttttctttc ttttttgata tttttcaaat catcatttag tttttctgat
    13741 ggttttaaaa ttttcttatc aatatatgaa taaataatat aagctacaat accccctaaa
    13801 agaggagaag ctatccaaga aatagctatt cttaaaattt cactccattt aaccatagag
    13861 agtgtttgga tcccatcaaa ttttaaaagc cccatcataa tgctagcacc tacaattcca
    13921 ccaactatac tgtgtgtggt tgatacaggt aagcctttct tggttgcaat aaaaatccaa
    13981 accccagagc ttaaaagtgc agcaagcata atgataacaa aaagcatagg atctaaagaa
    14041 tttggaaaaa taacaatacc gctgcgtatg gttttagtaa cttctgcgcc tgcgaagatt
    14101 gccccgctta gctcaaaaac agctgctata attaaagctt gtttaatggt tactgttttt
    14161 gcgccaacgc ttgttccaaa agaattggct acatcatttc cacctatatt aaatgccata
    14221 aaaatgccaa atatagaagc aagaataaaa agaatcaatt gatgttgcga aatataacca
    14281 aatccccaaa taacaaatgc gatagtactg ataataaaaa taacaaaagc tatgaggttg
    14341 tctttttgca ttaataaccc ttttttattt taattataca cttatttact ttaaatttgc
    14401 taattttatt ttttagtctt tgtggaattt ttatttatat tattttttta taataaatac
    14461 tcaaacaaga aataataagg aatataagaa taatgagggg tattttttat ataatagcat
    14521 tgttttcttt actcaatgcc gatgaactta cagaggcttt agcaaaaaat aataatcaaa
    14581 attcttggga gcactttgat tatgaaaata ccaaagaagc tccaaaaatt caagaagaga
    14641 atgtggattt taaaagcact tttgatagct tactttcaaa aactttagaa aataataatg
    14701 gtatagataa aacagatggg aatttggatt ttcaaaacga aaacgcgcag gttaaaaatt
    14761 taagttctct ttatgagggg gagaataatt ctttgctttt tcaaaaagaa ctttttgtgg
    14821 ctcaagataa ttataattac tcatggggtt taatcaatcg ttatgaaaaa gatgattttt
    14881 tatttggagt taatggtttt attgataaac aaaaagaaca aaaagatact aaaagctttg
    14941 gtacagagtt tggttatagt aaatttataa aggcttatag taattattat atacccaatg
    15001 aagcagaaaa aaatttacag cttggaatga gttttgtaat tccaacttat accgcttttg
    15061 cttttgatat aagtaaggat aatgataaaa ctaattatca agtatcttac tctccttata
    15121 gtgtatttag tttaaattta ttgcgtcgtg attatagtgc aagagagact gttgatgata
    15181 ctgttgttca agttggattt agttttaatt tcaatgaaag ttttttaaag caatttagaa
    15241 aaaaagataa tactttagag gaggttaatc gatatgattt cctccaaaga acccattagt
    15301 tcattccagc attatggaat ttttctggat tatccatagc atagcggaat ttttcccaat
    15361 caatttgttt atcccagatg gcaacgatta aggctgctac tgaatttcca caaagatttc
    15421 caaccgctct catttcagac ataaatttgt caacacctaa aagaatacct atagcagtta
    15481 ctggtagaac ttgtgctaag gttgcatttg cttctgaaat ttccatattt cctagagccg
    15541 caagcgtact tccaagcact ataaaacctg atccagttac acctactgca ccttttgagg
    15601 ctatcattaa tactattaaa atactgattt cgtgtgctaa acttaaattt acattgaaag
    15661 cttgtgctag aaagattaag ctcatagcta gataaatatt tgtacaatca agattaaaac
    15721 tatatcccgt tggtaaaaca agtccgactg ttgctttaga aagtcctgct ttttctagtt
    15781 ttctcattaa aggagcaagt gcagactcgc ttgaactggt tgcaaaaacg atcaatactt
    15841 ctcttgagat aaatctcata aatttgaaga tatttacttt tgcaaaataa caaatcagac
    15901 ctaagattcc aaatataaaa acaagacatg aaatcagcat tactaaaagt aaatatgcta
    15961 agttgatcaa agagccaatt ccgtattgag ctatgagtac agccattgct gaaaaggcgg
    16021 caataggact aaaatacata atgatttgta gaattttaaa aacaaaattt tgtgccactt
    16081 caaaaactct ttgaattgcc tgtttatctt ctattctcat taaagaaata atcaaagcag
    16141 taattatagc aataactaaa acttgtatgg tttttccttc tgtaaaaggc gtgataatat
    16201 cagtaggcat agcatctttt aaaatatgca taatctcaga gctcgcactt acttctgtgg
    16261 tttgagaaat gtatttttga acgctttttg tatcaagttg acttggatca agattcattc
    16321 catggcctgg ttgcataaca tttgccataa aaatacctat agcaagtgct aaagtactta
    16381 caacttcaaa gtaaataacc gctttagcac caatgctacc tacttttttt aaactttcaa
    16441 gactaatgat gcctaaaacc aaagtaacaa aaataatagg acctataaga acctttaaag
    16501 cacctataaa ataatcaact cctggtttgc tagcaatggc taattcttta tctatatagc
    16561 caagtacaat acctgcaata atgcctataa tcacccaaaa tccaagactt ttgataatac
    16621 gtttatataa aggcggtttt ctttcagcta aagtttgact taaagtttcc aagtttattc
    16681 actccttttg atctttgtaa aatataattt taacaatgcg tattgtaaat tttaacaaaa
    16741 aaacaaatct agaaatactt tcttttatat gatatgataa ttttttatat aaatgttaca
    16801 aaatttctca ttatttgcat tataaaa
//
LOCUS       DARGED010000024        16569 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.024, whole genome shotgun sequence.
ACCESSION   DARGED010000024 DARGED010000000
VERSION     DARGED010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16569
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.024"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..886
                     /locus_tag="SFZ84_000639"
     CDS             <1..886
                     /locus_tag="SFZ84_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG8202783.1"
                     /translation="KASIYRGNKLISSNEKTFDKSENLLEYIKNLSKHFLFYHTALFL
                     DAKEQGLIPSTNIQDCEHFNIGKISLQHILFNNGLVYTATEHVEYYSELFEEYRGLDF
                     LYSPFALLYYNIQKEKQPDDQILLYGFKQGHLLAIIVAKGNTILYGDFKIFEQELGLE
                     LELPSEDNQEIENNNNDTEVTLDNFNEALNNKFDLLDQENNLETLNNNDNFNLDELNQ
                     FSNDMELCRYIITSIEKFYNDDKYAGVFINGILLYSESDINISAIDFLESETFLEIKT
                     KQINTLDLMIELMQKELK"
     gene            883..1410
                     /locus_tag="SFZ84_000640"
     CDS             883..1410
                     /locus_tag="SFZ84_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202784.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLKNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            1400..1918
                     /locus_tag="SFZ84_000641"
     CDS             1400..1918
                     /locus_tag="SFZ84_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202785.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(1910..3202)
                     /gene="thiC"
                     /locus_tag="SFZ84_000642"
     CDS             complement(1910..3202)
                     /gene="thiC"
                     /locus_tag="SFZ84_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG8202786.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     regulatory      complement(3259..3363)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(3377..4147)
                     /locus_tag="SFZ84_000643"
     CDS             complement(3377..4147)
                     /locus_tag="SFZ84_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8202787.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFILKTRTTKIKDEIFCIVDIESTGSVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTATHKAKINI"
     gene            complement(4144..4791)
                     /gene="rpe"
                     /locus_tag="SFZ84_000644"
     CDS             complement(4144..4791)
                     /gene="rpe"
                     /locus_tag="SFZ84_000644"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG8202788.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            4931..5125
                     /locus_tag="SFZ84_000645"
     CDS             4931..5125
                     /locus_tag="SFZ84_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG8202789.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            5310..5525
                     /locus_tag="SFZ84_000646"
     CDS             5310..5525
                     /locus_tag="SFZ84_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG8202790.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            5535..6632
                     /locus_tag="SFZ84_000647"
     CDS             5535..6632
                     /locus_tag="SFZ84_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG8202791.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(6664..7260)
                     /locus_tag="SFZ84_000648"
     CDS             complement(6664..7260)
                     /locus_tag="SFZ84_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG8202792.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(7343..9405)
                     /locus_tag="SFZ84_000649"
                     /pseudo
     CDS             complement(7343..9405)
                     /locus_tag="SFZ84_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(9548..10486)
                     /locus_tag="SFZ84_000650"
     CDS             complement(9548..10486)
                     /locus_tag="SFZ84_000650"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEG8202793.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEATAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(10488..11702)
                     /locus_tag="SFZ84_000651"
     CDS             complement(10488..11702)
                     /locus_tag="SFZ84_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG8202794.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVVGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(11729..11962)
                     /gene="acpP"
                     /locus_tag="SFZ84_000652"
     CDS             complement(11729..11962)
                     /gene="acpP"
                     /locus_tag="SFZ84_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8202795.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            12072..12740
                     /gene="tenA"
                     /locus_tag="SFZ84_000653"
     CDS             12072..12740
                     /gene="tenA"
                     /locus_tag="SFZ84_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG8202796.1"
                     /translation="MMLFSNLIKENQKIWDAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTATRLEVAFWEHSLRM
                     ELNL"
     gene            complement(12764..13621)
                     /locus_tag="SFZ84_000654"
     CDS             complement(12764..13621)
                     /locus_tag="SFZ84_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG8202797.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPILTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAQGRMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKETVGLDY
                     NIIDASKIA"
     gene            complement(13625..14590)
                     /locus_tag="SFZ84_000655"
     CDS             complement(13625..14590)
                     /locus_tag="SFZ84_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG8202798.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPLSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGENEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(14587..16422)
                     /locus_tag="SFZ84_000656"
     CDS             complement(14587..16422)
                     /locus_tag="SFZ84_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8202799.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDTNLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
BASE COUNT         5724 a         3144 c         2145 g         5556 t
ORIGIN      
        1 aaaagcttct atttatagag gaaataaact aatcagtagc aatgaaaaaa cttttgataa
       61 aagcgaaaat ttactagaat acataaaaaa tttaagcaag catttcttat tttaccacac
      121 tgctttattt ttagatgcca aagaacaagg attaatacct agtacaaata ttcaagattg
      181 tgagcacttt aatataggaa aaatcagctt acagcatatt ttgtttaata atggccttgt
      241 ttatacggct accgaacatg tggaatatta tagcgagctt tttgaagaat atagaggttt
      301 agatttttta tattcccctt ttgctcttct ttactacaat atacaaaaag aaaaacagcc
      361 tgatgaccaa attttacttt atggatttaa gcaaggacat cttttggcaa ttattgttgc
      421 taaaggcaat actatcttat acggtgattt taaaatattt gagcaagaat taggtttaga
      481 gcttgaactt ccatcagaag ataatcaaga aattgaaaac aacaataatg atactgaagt
      541 taccctagat aacttcaatg aagccttaaa taataaattt gatctacttg atcaagaaaa
      601 taatcttgaa actttgaata ataatgataa ttttaatctt gatgaattaa atcaatttag
      661 caatgatatg gaactatgcc gttatattat tacgagcatt gaaaaatttt ataatgatga
      721 taaatatgct ggggtattta tcaatggtat tttattatat agtgaatcag atattaacat
      781 aagtgctatt gattttttag aaagtgaaac ttttttagag ataaaaacga aacaaatcaa
      841 caccttagat cttatgatag aattgatgca aaaggagctt aaatgactta tagcttcata
      901 cagccaagaa aaaaacctat tttcacactc tttgataaaa tttggctagg actttttggt
      961 tttagtatat tatttatctt gctagtatat tttacatata caataaaaat tgcattaatc
     1021 aatagctcta tcgatgatga aaaacaacaa gttatagtgc ttcaaaatca aactaagcaa
     1081 aatgaaatgc tttatgaaat tttatttgat caaagccaaa tagcgaaaaa ttttaacact
     1141 caaaatcaaa ttgttaaaga aagcttaaaa aatctatttg atattattgt aaaaactgat
     1201 aatattactc ttgaaagtgt tgaacaagac gaatattcct taaaacttat cggagtcact
     1261 cctacaagag aaatgtttac tctactttta gaaacccctt taaaaagcat ctttgatcaa
     1321 agctatacaa cctattatcg cttagataat gggtggtatc gttttgttag tattagtaaa
     1381 caaattccag gagttgcaga tgaaagataa aagtctagaa gaaattgatt tattaaagct
     1441 tatcatttgc gcgttaagtt ttataagcgt ttgcacagcc ttgatcttat ttttactttt
     1501 accgacatta aaaaattata aacaagcaaa tcttagagaa aattcacaac ttgctatctt
     1561 aaaagccgct aaattaaaat ttgactttag tgaagataaa atatcaactc taagaagcga
     1621 aaacaacaaa agtttagagc aatttgagca aaattttaat ataggaaatt ttgatatttt
     1681 tttacaaaaa tattttcaaa atgtaaaaat tcaagaaact aagcccgaaa aacaagaaaa
     1741 atatctaaaa aaccgcttag ccattaaagc gacaatgaac aatcctagaa ggctttatga
     1801 ttttattgat gctctaaaaa actataataa cttaatcaag cttgattatc cacttaatct
     1861 taaagcagga gagcaaggta tctctataga tcttactctc aaagtttatt caagctaaac
     1921 tcacatcttc gccttttaaa atttgattca tagtattcat tgcacacatt tttccacaca
     1981 tagaacatga gtttaaatca tcaggacgac gctcattaaa catttttttg gccttttctc
     2041 catcaatagc aagtttaaac attttctccc aatctatctc ttgcctagcc ttactcatct
     2101 catcatctct tgctctttct tttggaagtt tagctatatc tcctgcatga gctgcaattt
     2161 tagtcgcaac tataccctct ctaacatctt ctaaatttgg aagtcttaag tgttcagcag
     2221 gtgttacata acacagcata tcagcaccgc tagctgcagc cacagctcct ccaatagcac
     2281 cactaatatg atcataccct gcgccaatat ctattaccaa aggtcctaag acataaaaag
     2341 gcgctccttt acataaacgc ttttctaatt gcatatttgc ctctatttca ttaatagcca
     2401 tatgccctgg accttctatc attacttgaa tcccaacatc ccaagccctt tgagtaagga
     2461 gtgataattc tataagttct gaaatttgtg ccccatcact tgcatcgtga gtagagccag
     2521 gacgcaaagc atcgcccaaa gataaagtta catcgtattt taaacaaatg tcaagcaaat
     2581 catcataata ctcaaaaaaa ggattttcag catctttcat catcatccaa gcataaagta
     2641 cagagcctcc tcttgaaact atatttgtaa gtcttttact ttgtttaaaa atatgcgctg
     2701 cgcgagaatt aatacctgca tgaattgtca taaaatcaac cccactttta gcatgatgat
     2761 atacaacatc taaaaagtct ttagcaccaa tttgttttaa atctttttct aaaaatccta
     2821 ctgcatcata tacaggaact gttcctatca tagcttttga aacattaaca agctcgtctc
     2881 taaaacgact tgttttgcca taattgctta agtccataat cgcttctatg ccaaatttat
     2941 gagcaagctc tacttttttc atttcctcgc tataatcaac gcaatcattt gaaactccta
     3001 aatttacatt aaccttagta cgcagtccaa aacctatacc atttggatca agacttttat
     3061 gattaatatt tgcagggata ataattttac cgcaagcaat attttcaagc aaaaaatctt
     3121 tacttaaatt ttctttttgc gcaacaatct gcatttcttt agtaaaaata ccttctttcg
     3181 cataattcat ttgagttttc ataaatttat cctttaaaaa atttggataa atgaagggtg
     3241 agtataaatt tttaaagtat tgaaatttat aaatcttccc gacgctggca ttatccagat
     3301 ccggttcggt ctaagctttt agcttactct cagcctgtta cacaagctcc cgtcatttat
     3361 gtcttaatta tactctttaa atatttattt ttgctttatg cgtggcagtc tttgtaaaat
     3421 ttataagttc ttctgtagtt tttatatgat agggaagttt tccaaggcaa tatttaaaaa
     3481 tttcagcagc tgccaaagca tcgtctaaag ccctatgatg cgtattttcc acgcccagaa
     3541 attctttcaa aacctctagt ttatattttg gactttctat acaacattgt gcaaattcta
     3601 tagtacaaat acgacgatta agtaaaatgc caaaaccaca ctcatttaaa gccttagaaa
     3661 taaaactata atcaaaacgc acattatgtg ctacaaaaat actgtctttt aaaaaaagcc
     3721 taaaatcact taaaaccttt gttaaacttg gagcattttc caccatctca taagtaatac
     3781 ccgtaagttc ggttatattt tctggaattt cttttacttt aacaaaactt tgaaagcgtc
     3841 caatttcttt agaattttga atttttactg ctccaatttc taaaatttcc cccttactta
     3901 cactgccagt actttctata tctactatac aaaaaatttc atctttaatt tttgttgtgc
     3961 gtgttttaag gataaaaata ttatctttat tcaaagttaa gcccaaaccc aaaagctcaa
     4021 aagtttccaa atctaaatca aaatttttta attcttcaac tttggcaaac tcttgcatca
     4081 cccaatcata aggcttgctt tgcttgttta atatagaaat aatctgatca atttgctgta
     4141 aactcaaaat tcaagcttta aagatgaaat tgcagtttta taatcattgg aagaaaaaat
     4201 ataacttcca gccaccaaaa tatcagctcc ggattcctct aaatcgctag catttaaacc
     4261 attaacacca ccatcaacct ctataaaaac tttagcattt tttttatcaa tcatttggcg
     4321 taattctttg attttttcat gtaccaaagg taaaaatttt tgtccaccaa atccaggatt
     4381 aacactcatt aaaagcacca tatctacaaa ttctagcatg tgtttaatag aatcaatagg
     4441 agtatgtgga tttaaaacaa tagcaggatg gattccttga cttcttatat attcacaaag
     4501 ccttatagga tgaacttcgc tttccatatg aaaagaaatg aattttggtt tcaaagggat
     4561 aaaaagatct ataaatttac ttacatcttt aaccattaaa tgcacatcta atggcaactt
     4621 actaatagtt gaaatttttt cgatcacgca aggtccgaaa gtcaaatttg gaacaaagtg
     4681 tccgtccatt acatcaatat gcaaaagatc tgcacctgca gcttcaatag ctttaacttc
     4741 ttcttctaat ttcaaaaaat ttgcagacaa taaacttgga gctacataca tgatcaaaac
     4801 cttaaactat atataaatgt gataaataat attttatcga cttatatatt aaaaaaacta
     4861 taaattatgg aatattttaa gcttaatttt gatagaatct tcatttaaaa attttcataa
     4921 ggacaagaaa atggcaagag tatgtcaaat cacaggcaag ggtccaatgg tgggtaataa
     4981 tgtcagccat gctaacaata aaacaaaaag acgcttttta cctaatctca gaacagttcg
     5041 tgtaacttta gaagatggca ccacgagaaa aatgagaatc gcagcttcta ctctgagaac
     5101 tctaaaaaaa caaaattcta aataattttg aggatttatt cctcaatttt aaaatttcca
     5161 atttaaaaat aaactttaat aaatcactta tataacacac atttaaaaat tattattaat
     5221 tttattattt tttaagccaa aaatatcttt taatagtgta aaataccttg ttaaatgaat
     5281 tttaaatttc actaatacaa ggagagttta tgctacatga atatagagaa ttaatgtcag
     5341 agctaaaagg taaagatgct cattttgata aactatttga tcgtcataat gaacttgatg
     5401 acatgattaa agatgcagaa gaaggtagaa cttctcttag cagcatggaa atttcaactt
     5461 taaaaaaaga aaagcttcat gtaaaagatg aacttagcca atatctagca aattataaaa
     5521 aataaggcaa aacaatgttt ggaagtaaaa taaaccattc tgatcttcaa aaacttgaag
     5581 aagaaaataa aaatcttaca cataaaattg aaaaatttca atcggaaaat ttagaattaa
     5641 aaaataaaat tacatcatta gaacaagcgg ctttagagtc taaacttaaa acagatcttt
     5701 taaatgtttt attaactggg gttttaaaaa atattactat tattcaaggc gatatgttag
     5761 aaaatgtaaa taaggcagaa gttatctcta gctattctaa aacttctctt gctgaaatgg
     5821 atgaacttaa ccatattgct aattctatca atgcctcttt gggaaatatt acagaatcag
     5881 ccaataaaac aagagatgtt gcaggaacat tgcatagaag tgtagatgaa attactaatg
     5941 taattaatct aattaaagat gtttccgatc aaaccaatct tttagctctt aacgctgcca
     6001 tagaagctgc acgcgcaggt gaacatgggc gtggttttgc tgttgttgcc gatgaagtaa
     6061 gaaaactagc tgaaaaaaca caaaaagcaa ccacagaagt tgaaatgaat atcaaccttc
     6121 taaagcaaaa tgcaaatgaa atgtatactc aaagtgagca agttgaaaaa atttctatag
     6181 attctaatgc tcatattatg agtttttccg aaaaatttac tcacttagta aatgaagcgc
     6241 attctactaa ttcaaatgca gttggtatcg cttcagaagc tttcgtatct ttagcaaaac
     6301 tagatcatat agcttttaaa ttaaatggtt ataaagaaat tttttccaaa tcaggaaagc
     6361 aattagccga tcatacatct tgtcgcttag gaaaatggct tgctagcaca ggaaaagaaa
     6421 gatttgggca aaataaaagc ttcttaaaaa ttaacgagcc acatgaaaaa gttcatgaaa
     6481 atatgaataa tgctataaca atagcaaata cagaagatat tagcaaagat attactcaac
     6541 acagcataat taataaatgc gaagttgctg aaaatgcatc gcttgatctt ttcaatgtat
     6601 ttaaagaaat gcttgatgag tcagatcatt aaaatcctag gttgaacctt tttaaggttt
     6661 aacctaaata atctttaatt ttccccactt ttcctttaaa aaccacatat aagcaaaatc
     6721 aagcaaaggc gttcttatca tatttttaca ttttttttca aaatcctgca ccttaacata
     6781 aacagcttca atctcttcat catcaactcc acctccagaa gaaattttat ctttttcatc
     6841 aacttctacg aaataaaagc tttgcttgct tacacctgaa ccaaaccctg tataaaaatc
     6901 tcctattttt tctaaatttt taggagcata tcctagttct tctatacatt cttcttttgc
     6961 tatttcctct aaagataatt ttttatccac aagcccagaa caaagctcta tagtatagcc
     7021 catatcatca tcttttacat aatctttatc atgcatttga tgataccaaa gtggtatacg
     7081 aaattggcgt acaaaaataa aactttctaa ttctttatga tacaaaagca ctgaaacact
     7141 atctttagat tctataaaat cccaagtgca aagcctacca ttactttcat aagcaaatct
     7201 cttaggctta atataatttg atttttcaaa agaaagttct tttaaatttt taaacgccat
     7261 aataaaacct tttatttatt tttcacattg tactttattt ttgctttttt gaaaatataa
     7321 aggtgattaa agccttaaaa aattaaaaat catatttata acttaaccaa aaacttcttc
     7381 cttctgtata atcttgatag cgatttgcat atccagcagg attagcccca tcccatcttg
     7441 taacttgcgg atcaaagaaa tttttatcaa aaagattttg cactgcaaaa cttaagctag
     7501 attgcttatt gattttataa tttatcccta aatctactat ataaaaaggc ttatattttt
     7561 gccatggcag actaccatta ccgccacctt ttgctttagc tatagtatca agtcttgctc
     7621 gtgtttttat ataggaacta aatttacctc gctcatagtt taattttaac attgctatat
     7681 gtcttggtaa attttctatt ctatcaccac caaaccaatt tttttgacca tctttgtagc
     7741 gattatccat aaaagtataa cttgaattta ggctaaagcc attgtaagtt ttggtattaa
     7801 atgcaaattc tataccttta gtctgcgttt ttccaagatt aataggacgc ttacaaacaa
     7861 tgccattgct acaattaata tcattttgca tacctgttaa atcttcacta ctgatttgat
     7921 ttgtaaaatc agtaataaat cctgtaatag aataatgtgc aaaatcaaat accataaaat
     7981 caacacccaa ttcataattt atactttctt ctggttttaa gtcagggttt ccaaaataag
     8041 cattattatt ggcataatta taatatccat ttgtcaactg cttggcagca ggagttttat
     8101 agccttttga aacacctcct ttcaaggcta tattatcatt taagtgataa accaaataaa
     8161 ccctaggcgt aaattcagaa tcaaacaaat cgctataaat ataacgcaaa cctgtagtaa
     8221 aaatcaaatc atcggttata aaatactcat tttccccata aagcgcaacc gcggtttgat
     8281 caagattttt acctcttatt tgactacctg cgcttgcttg atcattttta atatctcata
     8341 atcaatcctt gcaccaaagg tatttactaa attaccgtat tgacctaaat tccaaggtaa
     8401 aacaacctta ccttctccta cccaaatttg gctatgcagc tccttatcct tagtgctacc
     8461 atattgtaaa tatgagttag ttgaaccaaa atcatagtta ccatcatgat ttaaaacaat
     8521 attatcctta aaaagttgtc tttcactttt aatagcccta ctacttgtag aattcactga
     8581 aatttcatta atatatcgct ctatatcaaa atatatatta tttttatcat ctactgtcca
     8641 attaagccta gaaccaaaac ctaaactagt aaaagcacct ggactatgac tagcaatttg
     8701 gtaattatca ggtctttgat tgttattatt ccaaaccggt gtaggccatt ttaaatcaga
     8761 agctgcctta tcataatact tcaaccttgc aaaattgata atatatcttc aatcaaagga
     8821 gttgctacat aagcattaaa tccctcagca ttaccatagt gattagagtg ctgttgtaaa
     8881 agagtattaa attctatatt tgcttcgatt ttatcaggat ttttcttagt gataatattt
     8941 atccacaccg cctacagcat cactgccata aagtgtagaa gctggaccac gtataacctc
     9001 aatacgctct atcatagaca aaggtggcag atatcctgac tcactgccgc taaaaccatt
     9061 atcataaaac ccatttgtaa cactttgacg ttttccatca attaaaacta gagtataaga
     9121 actaccaaaa cctcgtatgc taaaatcata agtgcctgtt ttattcatag tcacatctac
     9181 acctggaata tctcctatag cctctcctat atccttaatt ggcttttttt caagctcttc
     9241 ttttgtaatg atagaaatac tagcaggcgc atcaaccaaa tcttgttcaa aaccactagc
     9301 actaaccaca acatcattaa gttgatattt ttcttctgct tttaacaaag ctccagataa
     9361 aattaaaaaa cacagtaaac tttttttaaa ttttatattt ttgatttgag tcaaattaat
     9421 tcctttaaaa ataattattt tgatatttaa aatcattttt gaagtataaa aaaagaatac
     9481 ttttaattaa cttaattttg ataacaatta taaataataa aattatttaa aaaagcgaag
     9541 taaaagccta agcctcttga taggctccaa gctttaaaat tttctgcata cgatttgcag
     9601 aaagttctcg tacatcaata ttttcaagtt catttagaga tttttttaca taatcagcaa
     9661 tagctactgc tgtagcctct ttattgcgat gtgcaccatt tgtaggctca tctataacat
     9721 catcaattaa accttgagat tttaaatcat cagccgttac cttcatagcc ttggttgcag
     9781 cttcactttt tgcaggatca ttccaaagta ttgcagcaca accttcagga gaaattactg
     9841 aaaaaacaga atttttcatc attgcaagtt tatctgcaac ccctatagct aacgccccgc
     9901 cactaccgcc ttctccgata actatagcaa tggtcggtat tttcaaatca cttaattcat
     9961 ataaatttct agcgatagct tcactttgtc ctctttcttc agcacctatt ccaggataag
    10021 cacctggagt atctatcaaa aataaaatag gaatttgaaa tttctctgca agtcttgcta
    10081 ctcttaaggc tttgcgatat ccttcaggat gtggcatccc aaaatttcta gcgattttat
    10141 cttttgttcc acgtcctttt tgctcaccaa ttacaattat ttttttctct cctaaataac
    10201 ccataaaaca aacaatagca ggatcatctc taaaggcacg atcaccatgt atttcgtgag
    10261 cgtcatttaa aataagttca atatagtcaa gagcataagg gcgatctgga tgacgcgcta
    10321 attgcaaacg ctgaaaatca cttaaattct tataagtttt agaaatttct ttttcaagat
    10381 ttttctttaa aattgataca gcttcagtat ctcctttaat ctgagcattg ataatgtcct
    10441 cgtcaatttg ctgaatattt ttttcaaaat ctaaataaga agccatatta atctactttt
    10501 ttaaatacaa cacagccatt tgtgccacca aaaccaaaag aattactcat caccactttt
    10561 aaatctactt ttcttgatat atttggaata taatcaagat cacattcatc atcttttaca
    10621 agctgattga ttgtaggtgg aactacccca tctcttaaag ccataacact aacaactgct
    10681 tcaattgcac ctgcagcacc caagcaatga cctgtttgtc ctttggtgga acttataagc
    10741 gggatattat tgccaaaaag ctctttaatt gctgctgttt catttttgtc atttacaggg
    10801 gttgaagttc catgtgcatt gatataatct acctttggat tccctgccat atttaaagct
    10861 tttttcatag ctcttaaagg cccatctaaa gttggtgaag taatatgatg cgcatctgca
    10921 ctttctccaa atccaattaa ttcagcataa atcgtagcac cgcgtttttt agcctcttca
    10981 tattcctcaa aaactaaagc tccagcacct tctcccatga caaaaccatc tctttctttg
    11041 tcaaatggtc ttgaagcatg ctgtggatct tcatttctag ttgataaagc tttcattgaa
    11101 gcaaaaccac ctatacccac aggacaaatc gcagcttctg cacctacgac taacatcttt
    11161 ttagcatttc ccaaagctat acttttataa gcttctccta tagcatgagt tcctgctgca
    11221 caagctgtaa cacaagaaat atttggccct ttaagtccat gctctataga aatcaaacct
    11281 cctaacatat ttacaagtgc cgaaggtatg aaaaaagggg aaattttacg cggacctcgc
    11341 tcggaacaaa taatggaatt tttttctatg ttaggcaaac ctccaatacc agaagccgaa
    11401 acaatgccaa attcttcttt gtctaattct tcactaaatc cagcatcctg cattgcttct
    11461 cttgctgctt taattccaag ttgtatgaaa cggtcaattt tttttacttc tttgccatca
    11521 acaacctcta atggatcaaa atttttaact tcagctgcaa tttgaacagg aaagtccgta
    11581 gcatcaaaaa gagtaatttt atttactccg ctttctccat tgcaaattgc tttaaatgaa
    11641 ctttctttat ctaaaccaag ggcattgatc ataccaatac ctgtaactac aactcttttc
    11701 aagaataagc tccttgcaag aaaaaaaatt atttttttaa attgtcaata taatttacaa
    11761 catcttcaat tttaattaat ttttcagcat cactatctgg aatttctact tcaaattttt
    11821 cttctaaagc cataataagc tctacaacat ctaaagaatc agcacctaaa tcttcaataa
    11881 tttttgattc cattttaact gcatctgcat caatacttaa ttgctctact actactgctt
    11941 ttacatcatc aaatgttgcc atttgttctc cttcaaaaaa ttaaaataaa gcgtatttta
    12001 ctataaaaag cttaaaatat ttatagtttt tcattatact tgaaaataaa atattaaaac
    12061 ataaaggaaa aatgatgctt ttctctaatt taatcaaaga aaatcaaaaa atttgggatg
    12121 cttatctaca tcatgatttt gttaaaaaat tagaagataa aagcctaaag caagaaaatt
    12181 ttctttttta tctcaagcaa gattatattt atttgcttaa ttacgcaaaa tgctacgcaa
    12241 ggttagcact taactcaaat accgcaaaag aacttcgttt tgctatgaaa tttcaaaatt
    12301 atatagttga aggagaaatg gagcttcatc gtgcaatttt atctcttggc attaatgcag
    12361 atgaactcga tataaaagat gaaagtttag tcaatatagc ctattcgcgt tatatgttaa
    12421 gcgtaggtga aaatggagat tttttagata tgttagttgc tcttagtgct tgcgctatag
    12481 gctatgcaaa aataggtgct gaaattataa atcgtttaaa aaatgaaaat ttaaaagatc
    12541 atccttacaa ggaatggatt ttgacctatg gaagtgaaaa ttttcaaaat gaagctaaag
    12601 aatttgaaga ttttgttaat tcttatactt caagtgttag tgcacaaaaa ttccaaaaac
    12661 tcagcgaaat ttttcatact gcaacacgct tggaagtggc tttttgggag cattctttaa
    12721 gaatggaatt aaatctttaa acatgggctt tttgcccatg tttttatgca attttacttg
    12781 catcaataat attataatct aaaccaaccg tttctttaga aagtcctaat gcaagtccta
    12841 ctaattgtga taaatgaata ataggcaatc ttgctttaga attagtataa tcttgaaatc
    12901 tttcttgata gatatcaagc tgcatttgac aaagtggaca aggtgttaca acacaatcag
    12961 cttgattttc acttgcatta ttgacaattt gactagacat ttttttcaca gatttttctg
    13021 caggataaga agcatgaaaa ccacaacaat caaggcgttt ttcaaaagga actattttag
    13081 cccctaaaac ttctactaca ctttcaaaac tttttggatt ggttgaactt tcttttttac
    13141 cgaaagcatc ttcaggtctt aaactatggc aaccataaaa taaagctact tttaaatttg
    13201 aaagcggctt tttcacctta ctttttaaat tatccaaatc ctcataaagc tcccacaaaa
    13261 gacttgtaat aggcgttgaa ccttgatatt tcattctacc ttgtgctaaa aaagtattga
    13321 tgcgttcttt tgcaccctta tcaagagtat tttttgcttt agttaaagtt agcatacaag
    13381 tactacaagt tgtaagtatt ggcattttca tctcttccgc taaagcaata tttcttgcat
    13441 tagctaccaa agtcgcaata ggatcaacac actgcgcttg agaagcccca caacaactcc
    13501 atcccttaat ttcattcaac ttccaaccca aaataggtgc aatagcttca agtgaaattt
    13561 tagattcttt tgcagcttga gataaaacac aacctggaaa aaaagcgtat tctttttgca
    13621 tattttactc cttaacagca gcttcttgtg ctgcctttat cattttaacc aaatctttat
    13681 gcccttctat ttcattctcg ccaaaaacat gcataggatt catttttcct gcgcgcataa
    13741 gtttaaaagc tatatctgtt ttacccatag aacctataac accctcagaa cgcaaagcaa
    13801 gataaatttc attcaagcgt cctgaacctt caactaaatc tttataaaaa gcttcagcat
    13861 gatcaggccc taagccttca tttaaacctt ttttaatcgc catcactctt aaatttgcta
    13921 tatcgcttac tgaacttata ccctttggac aacgatcagc acactcttga caatgaacac
    13981 aaagccaaag tccattcatt acgctgggtt ttacatgcaa cataggatcc ttacctcgag
    14041 agtctgccgc tgcacgccaa gcatgagtaa aaacaaaagg ttgcatataa tcgctactat
    14101 ctgcttctaa tttattacac tctgaagcac agctaccaca taaaatacaa tcccattgct
    14161 tgctaatacg atcaaattct tcttgacttt gtttacagcc cttttccgct gaaaattcat
    14221 tttttgctac catggcagga cgaatttttc ttaaattttc tatagaaggc tcccaatcca
    14281 caattaaatc agaaattact ctaaaatttc caagcggaga aatgcgtata cttaaaggat
    14341 tatcatattc ttttaacaaa tcttgcattt tagtatcaca agcaagataa gaatgcccat
    14401 tcacacgaac tgcacaagcc ccacaaatcg cagattgaca agaggcggta aaatttaaag
    14461 taatatcttt tgttttttta ataaaaagca aaagagagag cagagttttt ccttgtatat
    14521 ccttatcatc aatatcataa ctttgttcat atttttcctt gccattaaaa cgatctatga
    14581 tgattttcat tgtactctcc ttccatcaag tgaaaactca gttaccacga catctttata
    14641 actaagtttt aattcatcat tttctaaatt tacaatgcta tgttttaaga aatttttatc
    14701 atctcgcttt ggataatctt ctctagtatg agccccacga ctttcaagtc tatttctagc
    14761 tgctaaacaa gcacagcgag aaagtaaaat caaattgcca agctctacat aatctgtaaa
    14821 agcagtattc atcacttcat taggatttgg aatacgaatt ttttcatatc ttgcttgtat
    14881 atcttctaaa ttttttgcta gaagatcgag tttttcttga gttctaaaaa tccccatatt
    14941 atcccaattt tgacttccta gctcttctcg caattcatac atttcttgac catttccgcc
    15001 attatttgta atttctttaa atctaacctg ccatttttga gcaagttcat gagtttttgc
    15061 cccttttcca aaacttgcat ctttagcata atttgtcgca ccaatacctg ctaaatgccc
    15121 tgttacaact gcatcggcta aagaatttcc ccctagtcta ttagctccat gtatagaaat
    15181 gcaagaagct tctccaccta cataaattcc agcaatttta gtactcatat cttcaaattt
    15241 agccacttca attccaccca tagaataatg cgccgttgga cgaataggta caggagtatc
    15301 tactaaatca atattttcaa aaagcattgc agtgtgacga atttttggta aatcttttaa
    15361 aattttttct tttcctaagt ggcgtacatc gcacaaaaca taagctccaa gtccctcgcc
    15421 ataacctcta ccttcacgaa tttctgtttc tatagcacgc gcaaccacat ctcgcggtgc
    15481 aagctccatt ttttcatggt aatttttcat aaaacgctca ccacgattat ttaaaagata
    15541 tcccccttca ccgcgcgccg cttctgtaat aagagttcca ccatttgcaa ctcctgttgg
    15601 gtgaaattgt atcatctcag gatcttcaaa accaagtcct gctctaagag cagctgccac
    15661 accatctcct gtggcaataa aaggagttga agttctatta taaaatatcc ttgtgtatcc
    15721 ccctgtagca atcaccaaag ctttgcataa cacaggataa attccaccgc tttgtatatc
    15781 tcttaaaacg acaccctcgc attttccatc cacaacacct atatccaaaa gttcatgatc
    15841 cattaaaaat ttcacaccac tgctaatagc atcatctaaa caagaatgca ttaaaatatg
    15901 acctgtttta tctgcagaat agttacagcg tttcttagaa gctcctccca ttaaacgctg
    15961 agctactcca ccttgctcat ttcttgaaaa caaggttcct ataaaatcca tattaaaaat
    16021 agcctttcca gctaattcgc aaaattttaa agccgcgtct tgatctacca aataagctcc
    16081 gcctttaata gtatcataag catgtaattt ataggaatct ccattagaaa aatcagtaac
    16141 tccgttaatt ccaccctctg ccatacaagt tgcgttacga gatggcatca tctttgtagc
    16201 tactacaacg cttaattttg gattttcttt tctcactgcg gctgcagcac gcaaacctgc
    16261 tccacctgat ccaattacca aaacatcgca agaaggtaaa tttgtatctt tatccatctt
    16321 agatgaatca tctaaggcat aaaccccact tgaacttgca gctaaagctc ctacactaat
    16381 acaggctgtt tttataaaat ctcttctaga aaattcaccc atatcattct ccttatttaa
    16441 aaaaaattaa taataatttt ttaatgtaag tcaatcttac ataaccgcat gccaaaaatc
    16501 caaaaacaaa ctctcctttc aatataaaat ggattaaaaa caaatttata atttagtaaa
    16561 tataaaaaa
//
LOCUS       DARGED010000025        16548 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.025, whole genome shotgun sequence.
ACCESSION   DARGED010000025 DARGED010000000
VERSION     DARGED010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.025"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..238
                     /locus_tag="SFZ84_000657"
     CDS             <1..238
                     /locus_tag="SFZ84_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202800.1"
                     /translation="LDEISKNLNNIKLSMDDKAKIYLAKKAYNKEFGVRLLKRIISEE
                     IGEKISDEILFGKLKKGGIAKIKLGKNGKLKFIF"
     gene            213..860
                     /locus_tag="SFZ84_000658"
     CDS             213..860
                     /locus_tag="SFZ84_000658"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG8202801.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(882..2171)
                     /gene="cetZ"
                     /locus_tag="SFZ84_000659"
     CDS             complement(882..2171)
                     /gene="cetZ"
                     /locus_tag="SFZ84_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG8202802.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(2252..2878)
                     /locus_tag="SFZ84_000660"
     CDS             complement(2252..2878)
                     /locus_tag="SFZ84_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG8202803.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            complement(2893..3252)
                     /locus_tag="SFZ84_000661"
     CDS             complement(2893..3252)
                     /locus_tag="SFZ84_000661"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG8202804.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKAKD"
     gene            3342..4139
                     /locus_tag="SFZ84_000662"
     CDS             3342..4139
                     /locus_tag="SFZ84_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG8202805.1"
                     /translation="MQKEFFQELQDILYEKNITIKFHSFQNFYEDFKSHKLIFNHEHQ
                     SIFKKNTSQQITLLHPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKN
                     LPLQFYYDWLEVADEEIKHFKLLNSVLKELGYKYGNFPVHDNLESALEATKDSLSFRM
                     GVVHRGLEAKGLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFA
                     NQNRYDFIELCKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
     gene            complement(4130..4858)
                     /gene="pssA"
                     /locus_tag="SFZ84_000663"
     CDS             complement(4130..4858)
                     /gene="pssA"
                     /locus_tag="SFZ84_000663"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG8202806.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(4868..5485)
                     /locus_tag="SFZ84_000664"
     CDS             complement(4868..5485)
                     /locus_tag="SFZ84_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8202807.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            complement(5482..7419)
                     /gene="ftsH"
                     /locus_tag="SFZ84_000665"
     CDS             complement(5482..7419)
                     /gene="ftsH"
                     /locus_tag="SFZ84_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG8202808.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            complement(7423..8268)
                     /locus_tag="SFZ84_000666"
     CDS             complement(7423..8268)
                     /locus_tag="SFZ84_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG8202809.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            complement(8291..8683)
                     /locus_tag="SFZ84_000667"
     CDS             complement(8291..8683)
                     /locus_tag="SFZ84_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG8202810.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            complement(8796..9689)
                     /locus_tag="SFZ84_000668"
     CDS             complement(8796..9689)
                     /locus_tag="SFZ84_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8202811.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            complement(9689..11461)
                     /gene="pglF"
                     /locus_tag="SFZ84_000669"
     CDS             complement(9689..11461)
                     /gene="pglF"
                     /locus_tag="SFZ84_000669"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG8202812.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVLGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     RLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGRPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            complement(11463..12623)
                     /gene="pglE"
                     /locus_tag="SFZ84_000670"
     CDS             complement(11463..12623)
                     /gene="pglE"
                     /locus_tag="SFZ84_000670"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG8202813.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            complement(12721..13311)
                     /gene="pglD"
                     /locus_tag="SFZ84_000671"
     CDS             complement(12721..13311)
                     /gene="pglD"
                     /locus_tag="SFZ84_000671"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG8202814.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEESAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRKI"
     gene            complement(13298..13900)
                     /gene="pglC"
                     /locus_tag="SFZ84_000672"
     CDS             complement(13298..13900)
                     /gene="pglC"
                     /locus_tag="SFZ84_000672"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG8202815.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGGLLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNTISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            complement(13893..15023)
                     /gene="pglA"
                     /locus_tag="SFZ84_000673"
     CDS             complement(13893..15023)
                     /gene="pglA"
                     /locus_tag="SFZ84_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8202816.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            complement(15033..>16548)
                     /gene="pglB"
                     /locus_tag="SFZ84_000674"
     CDS             complement(15033..>16548)
                     /gene="pglB"
                     /locus_tag="SFZ84_000674"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG8202817.1"
                     /translation="IYTLIFHRKEKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFA
                     LEQKRLNFMIIGILGSATLIFLILSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVN
                     QTIQEVENVDFSEFMRRISGSEIVFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKG
                     GLRFTIYSVPVMALGFGFLLSEFKAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNY
                     KAPTVFSQNEASLLNQLKNIANREDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNF
                     FPSFALSKDEQAAANMARLSVEYTEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLA
                     SLSKPDFKIDTPKTRDIYLYMPARMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLD
                     VKNGEIYLSNGVVLSDDFRSFKIGDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIF
                     YLKDSAIPYAQFILMDKTMFNSAYVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
BASE COUNT         5904 a         3113 c         1898 g         5633 t
ORIGIN      
        1 acttgatgaa atttctaaaa atttaaataa tataaaatta tcaatggatg ataaagccaa
       61 aatttattta gctaaaaaag cctataataa agaatttgga gtaaggcttt taaaacgcat
      121 aatttctgag gaaataggag aaaaaatcag tgatgaaatt ttatttggaa agcttaaaaa
      181 aggtggtata gctaaaatca aacttggtaa aaatggaaag ctcaaattta tattctaaat
      241 tactcaatgc gcctaaaaat gctcctgtat ttttaagtca aaatttagaa gctgatttta
      301 ttgtaaaagc ttatactttt ggtctattcc catggacaag taaacctgta acttggtggt
      361 gtccagatcc tagatgcatt ttaattccaa atcaaattca catccaaaaa aatatgaaaa
      421 aatttattaa tctctatcaa attaaacttg attatgattt tttaaaatta attacattat
      481 gtcgcgatac acgctctcaa agctggatag atgatgaatt tattaccact tattataagt
      541 tatttaccca aggctatgca catagccttg aactttatga aaataatgaa cttataggtg
      601 gaatttatgg tttaatttta ggcaaggttt tctttggtga aagcatggta agcattaaaa
      661 aaaatgcatc taaagttgcc atgattaaac tttgtgattt attaaaacct tatgatttta
      721 tcatagattg tcaagtttat aaccaacatt tagaatttat gggtgctcat aatatttcta
      781 ggaaagaatt tttaaatatt ttaaaagaaa aatgcaatca agaaagtggt tttaaaaatt
      841 ttaaagattt aattacttaa aaataagcgt gaaaatcacg cttatgacat cgctttagca
      901 acttcagcag agctttcacg aattttctcc atacactctc ttgcttcttt tgcaagttca
      961 acactctgat taacatcctc taaaccgctt ttaatactct caaccacttg tgatgtaaca
     1021 ttgcgaatag aattaatcgt agtggtaatt tcattaaccg aatgccctgt tctttcagct
     1081 aaatttctta cttcatcagc aacaacagca aaacctctac catgttcacc agcacgtgct
     1141 gcctcaatag cagcatttaa agcaagcaga ttagtctgat cagcaatatc actaatagtt
     1201 tgaataatag atttaatttc atctgattgt tgatttaaag aggaaacaag atttgaactt
     1261 tgagacatca tatcagcaat attctgaaca tttgaaacag tgttttcaat tacacgatct
     1321 ccatcttgag taagattatc atttttttct gcaagttcgc ttatgagacg aagtttttct
     1381 tgatcttttt taacttgttc gcttatatct gtagcaaatt taataacctt gtaaattttt
     1441 ccatcatcat ttttaaccgg attataactt gcttcaaggt atactttttt attatttctt
     1501 ccgtatctta tatatttacc tgattgaaat ttaccctctc ttaaatcttc ccaaaattga
     1561 acatagtcct tagagtgtct ataattagaa tcacagaaca tactatgatg ctttccttta
     1621 atctcatcaa tattaaaatc catagttctt aaaaaatttt cattagccgt aataatagtc
     1681 ccatcaggtt taaattcaat aatagccata gaacgattag cagcagcaat agtatttcta
     1741 agatcaagca tttcataatg tctttgagtt atatcattgg caaatttaat aattttataa
     1801 acataaccat tattatcact aattggaaga taatttgctt ctaaataaac atctatccct
     1861 cccttagcta tacgtctaaa aagaccactt ctagcttttc catctcttaa atctttccaa
     1921 aaatcactat atgctgaaga attaacaact tcaggcaaac aaaacatact atgatgctta
     1981 cccttgatct ctgaaaggga gtatttcata gttgttaaaa aattttgatt tgcctctaaa
     2041 ataacgccat cggtagtaaa ttcaattacc gccatggtat tcccaataga tcttaaaata
     2101 tctcctaaac cattacattt tttttcaagt tgttcaatta ttttagtatt atttttctta
     2161 gcaccaaaca taaaactcac ctttttaata ataaattatt ttaaaattat atcatattta
     2221 tatagtatta tttacttaaa attatattaa tttataagtt aaatatatcc tttaaaccta
     2281 caataatcat cttaaacccc atagcaacaa taaatacttg tgctatacga gaaaaaacat
     2341 gtaaaatcaa ttttccaact attttttcta tagtagctgc aaaatgaaaa agtataaaca
     2401 taaaaataaa agctatcatt actccgccaa gagcaacatc aagcccacca tcttcggcta
     2461 taacaataac gctagctaaa gttccaggcc caacaagcat aggaaatgcc ataggtatta
     2521 aactctgtct taaaatttcc ttatcatcca tatcttgata agaactaaaa tccttagttg
     2581 caatttttgt tgaaaaaagt aaatttttaa tagccattat aataagaacc aaaccaccag
     2641 aaacccttaa atcatccaat gaaactctaa aaatatagtt cataaataaa ggtcctgata
     2701 ataaaaacac caaaactata gtaaaagctg tatagagaat agttctaaaa agtttttttc
     2761 gaagcattaa aggcaatcca tcactcatag ccaaaaattg agttaaatta ccaaaaggat
     2821 ttaatatagc aagtaaagta attgcagcaa aaaacatcaa ataaagctca gaacccatac
     2881 tagaaaacac tatcaatcct tagcttttac aaattccaaa gaaatagaat ttacacaatg
     2941 tcttacattt ttagcagaaa atccttctcc ttcaaaaaca tgacctaaat gtccattgca
     3001 atttgcacat acaatctcgg ttctaatccc atctttatca ggaattcttt taacagcccc
     3061 ttttatttca tcatcaaagc taggccatcc acaacctgat ttaaatttat cttcggattt
     3121 ataaagcgaa gctccacatt gcttgcattg atagattcct ttttcataaa aatcattata
     3181 tttcccacta aaaggagctt ctgttccttt atttaaaatt actttttttt cttcttcatt
     3241 taattctttc atgatctacc cttgtaaaat aatttttata ttatataatt aaaatttcaa
     3301 ttttaaatga taaattttta taattttcaa gaaagtttta aatgcaaaaa gaattttttc
     3361 aagaacttca agatatttta tatgaaaaaa atataactat aaaatttcac tcttttcaaa
     3421 atttttatga agactttaaa agccacaaat tgatttttaa tcacgagcat caaagcattt
     3481 tcaaaaaaaa tacatcacaa caaattacct tgcttcatcc tacgcgtata agaaggccta
     3541 aatttgtcaa ttcaactcat gcgcttgcta aaataattca ttcagtcgct catatagaat
     3601 ttaatgcaat taacctggct ctagatgcga gttatcgctt taaaaatcta cctttgcaat
     3661 tttattacga ttggctggag gtagcagatg aggaaattaa acatttcaaa cttttaaatt
     3721 cagtacttaa agaacttggt tacaaatatg gaaattttcc agtgcatgat aatttagaat
     3781 ctgctctaga agctacaaaa gactctttaa gctttagaat gggagtagtt catagaggtt
     3841 tagaagctaa agggcttgat gccaacccct ttgttgttca aaaacttcaa agttccaatc
     3901 attccattaa aaatcttcta atggaatatc ttgaaattat acttaatgat gaaataaaac
     3961 acgttaaaaa aggagatact tggtggaaat ttgcaaatca aaacaggtat gattttattg
     4021 agctttgcaa aacgtttaaa caattctctc ttgcgggaaa aaaacttaac attcaagcaa
     4081 gaatcaaagc tggcttcact caagaagaat gcgaagtcat tgaaaaattt tactcttgat
     4141 ttcttatctt aaattttgaa acgataatgg tatataaaac ccgaataatt ccataaagca
     4201 catacaagct tgctaaaatt actaaacttt caagagggta aagatataaa aatgaaaata
     4261 ttataattaa aataatcaaa acttttaaaa cactagaacg attaaaatca agctttttaa
     4321 agctaggata acgtatattg cttaccatta aaagccctaa aattgcttga agcaccaaaa
     4381 aaactacgcc ataaggcttt aaaaaatcat aactgataaa tgcataagtc catatagcac
     4441 ttacaactgc tgccgtaggt ataggaagac ctataaaaac ggagggttca taagtgcctg
     4501 tggtaacatt aaatctcgcc aaacgaatag ctccaaaaac cacaaaaaaa gctgtaatca
     4561 aagatccaag ttttccaaaa tcataaccta tagccatata aaaaagaacc gctggagcaa
     4621 ctccaaaagc tactagatca gccaaagaat caaattctac tccaaatttt gaagtagaat
     4681 ttgtaagtct tgcaacacgg ccatcaagcc catcgcaaat caaagataaa ataatataaa
     4741 tcaaagctgt ataataattt ccatgtattg aagctataat agaaataacc cctaaaaaag
     4801 ctgaagcagc tgtaaaaaga ttgggtaaaa tataaattag ttgcggtctg ttattcatta
     4861 tttttcctta cgcaaaatag cctagcaatg aacctgcttt aatttcatca tttaagccta
     4921 tatgaattct agtatctttt ggtaaaagta aacttataga gccattaatt aaaaaaccca
     4981 ttctatctcc tgcttttaaa tcatgagaaa tattatcaag ctttaatttt ctatcaaaag
     5041 aacctgcata gattcgcaag gctatcgttt tattctcttt aacttttgcc aaaataaaag
     5101 ctctttcatt catcattttt gcagatttta attcactgca caaaaaaagc ccatgtcgta
     5161 aacgaatatc tattatagac attgcaaaag gtgtattaaa attcccagca tcataaagag
     5221 catttttaat agtaatttca acacattcac ccaaatcttt atgatgaata ttttctattt
     5281 tagtaaccct accatccata ggtgcaaaaa tagctttttc atcactacaa acaagttctc
     5341 ttttgggcgc tctaaaaaga aaaatacaaa ttacaattaa tgctaatagc aagatggaaa
     5401 aagaataaaa aatccacaca aaaataaaaa ttaagcttaa aataataaga cttaaatatc
     5461 catcttttgc aataaaatct ttcattcttc tactttaact tcagttttaa cttcttcgag
     5521 ttcttgtaaa cgagttggta gactattttg atcctcaaac tctttaataa tctcgcgcac
     5581 tttattacct tcaatagttt cttcttcata aagggctgca accatagtct caatcgctcc
     5641 cttataagta tttaaagtat ctttaacatc tttatagcgt tcatccaagg ttttctttac
     5701 ataatcatct aaagattctg ccatcttttc agaataatct ttgatagttt gtccaccact
     5761 taagaaagta tttctttgtt tttcaagtac cataagtcct gcaatttcac tcataccata
     5821 catagaaatc atagctttta tgatatcggt tgctctttct aaatcattac ttgcacccgt
     5881 tgaaatttca cctataaaca cttcttcagc tgcacgacca cccaaaagta catctacttc
     5941 agcgataagt tcatgttttt gcattaaaaa tttattttcc tcaggagtat ttaaagtata
     6001 acctaaagcc gcaagaccac gcggaatcac agaaacctta cttacacgtt ttgcgccttt
     6061 ggtagtttca gcaatcaaag catgaccgca ttcatgataa gtaacaattt tcttttcttt
     6121 ttcattaata cgacgtgatt tcttctcaag ccctgctata gctctttcaa cagcttcaac
     6181 taaatcattt tgttctacat attttttaga atccctaccc gctaaaagcg ctgcttcatt
     6241 aataatattt gcaagatcag ctcctgcaag ccctgcggtt aagcgtgcta tatcttctac
     6301 tttaactttt ggggagattt tgacatcttt catgtgcact tttaaaatat cacacctacc
     6361 tttaaaatca ggtttatcga ctaaaacttg tctatcaaac cttcctggtc ttaaaagcgc
     6421 tgcatctaaa acttctgggc gatttgttgc tgctaaaaca atgactgggg aactttctgt
     6481 cccaaagcca tccatttcag ccaaaagctg atttaaagtt tgttctcttt catcgtttcc
     6541 acccatcatg ccacttgctg cacgactttt accaatagca tctatttcat ctataaaaac
     6601 aatagcagga gcttcttttt ttgcattttc aaataaatct ctcacacgag aagcacctac
     6661 acccacaaac atttctataa aagacgaacc tgaaacacta aaaaacggca catcagcttc
     6721 acctgcaact gcttttgcaa gcaaagtttt tcctgtacct ggaggcccaa caagtaaaag
     6781 cccttttgga attttagctc ccaatttaat atatctttca ggatacttta aaaaatctac
     6841 aatttctttt acttcttctt tagcttcttc aacaccagct acatcgctaa attttacttt
     6901 aggtttttct gaatttacaa gcttcttaga acttcctata cccaatatag aacttcccat
     6961 atttttttgc atacgacttg ccaaaaacat ccaaatacca aagaaaataa atactggcaa
     7021 aacccatgaa aaaagtatat ccgtaaacca atttgtttca gaatacgcac cataagcgat
     7081 atttttacta tctagtaaac tcacaagctc aggatcatta actttttttg ctgtataaac
     7141 agtattgtga gagcttgaaa tcgctttgat tgttgtttgt cctatactaa cttgattgat
     7201 ttgtccactt tcaataagct tttttaactc agaataaggg acatttttat ttacttcatt
     7261 gccattcaat gccccgccaa aagaaccatt gccatcaaaa aatcccttaa aaataattat
     7321 cattacaatt gcaaaaatcg caaaaataaa aatgggattt ttgttaaaaa aattattacc
     7381 ctgcggatta cccttattat tttgggtatt attattcatt acttatcctt ttttattatt
     7441 tttatataca aaactacacc actcattgat ttgcatttca tcaatgagtt ccaaatcttg
     7501 aaatttttct ttaattcttg ttgaatattt atctaaaatt cctgataaaa taagtatagc
     7561 attatcttct aaatggtttt taatatcttt ttctaaaatt aaaatcacat ctgcaatgat
     7621 atttgcaaca attagattat ataaaccatt tgctttatct atagatccac accaagcctt
     7681 gtgaaaatcg acaccattta atcttgcatt ttctaaagaa ctatcaatag ccaactcatc
     7741 agtatcacaa atttcaacat tacaaccaaa ctttgccata ataataccca aaattccact
     7801 accacaacca agatctaaag ctcttaattt acttttagaa aatttttgta aaaattttac
     7861 acaagaatat gtgctttcgt gatgtcctga gccaaaggct aaggctggat taatctttat
     7921 atttatacaa ttcttctttt cttcttgcca agttgtatgg atgtaaacat tatccactaa
     7981 gataggtttt atgccttttt tatattcttg tatccagtcc ttgttttctt tctctacaag
     8041 acttaaatta gaaataattt tatggtttaa attgaaagta gttgtaagtt tttgagcaaa
     8101 tatttcaagt gcccatgaaa actcttctaa actctcatgg gatctaatgt aaacaccatt
     8161 atctttctct tctatggctt ctatacctaa atcaaaagca aaatcaagaa ataaattttt
     8221 ataccgctct tctacgataa agaacaattc ataatatttt ttttgcattt agaattttaa
     8281 aaatcagcct ttactcagct gcaccttctc cacttcctgt tcctaaaaca tcttcaagtt
     8341 tttcctttaa aacttgtgga gtaaaaggtt ttacaatata gttatttacg ccagctttta
     8401 aagcagtaat cacttcagct tttccgccct cagttgtaac catgatgata ggcatatctt
     8461 catatttttt ctctgctctt acttttttta ccaactccaa gccattcatt tctggcatat
     8521 tccaatctgt aattaaaact tttacatctt catttttagt taataaatcc caagcttcaa
     8581 cgccatgctc agcttctaaa acatcatcgt gtccaagtct tgttagggta tttttaataa
     8641 tccttctcat agtagaactg tcatcaacaa ctaacaattt cacaatttcg tcctttcaaa
     8701 gtttttatag ttttatttta ccctttttag ccttattaat caagctaaaa aattttaaaa
     8761 aacagcatta tatcatcttt tacttaaatt tttactcaaa tattattatt tttatactta
     8821 accgtaaata aatatacact taaacctaaa agaagcaagc tcactccacc gataagataa
     8881 atcgcataaa tcatctgaga aagatcacca atagcaagtt taaataccaa catcaaagct
     8941 tctatagcta aagcaatgat aatagaaccc aaaaatctca ccatagtttt ttgaattcca
     9001 ccttcttctt tttttgtcct tcctaatact tcttgttcga tcaaagtttt tgccaaatca
     9061 aaaatagcta aagccaaagt tatagcgatg gtactttcaa acatatgttc tatacctata
     9121 gcttgattat caaaaagact aaaaaaacct ttttgaaata aaaaacaagt aatcacaaat
     9181 aaaaccagtg cgaagcaaaa atataccgaa cgactaaatt gagtaaaaac aaattcaaat
     9241 tttcctgctt gaataatctt taaaatatct tcaagtttta tatcaataca aacaacaaaa
     9301 agcaagttat ttttatcatc gtaaattggc atagaagctg tcacgcaaag ctcattattt
     9361 aaaaccgaag gataaggatc gctcaaaaca catcgtctta attttacagc tctataaaaa
     9421 taagaacgag tacttctatc ctcaccctgt cctatttcat gagccttatt taaggaaatc
     9481 gcattttcta tttgcatgcc tgaaatatct aaaatataca aagcatcaaa aacaacaact
     9541 tcatgagcta ttttatccaa agctgtttta atcgtttcaa ggtgaatgtc aggaagttta
     9601 ttgggcagat ttcttgttaa aatataactc atataagccc tagcacgata gcgattatct
     9661 tcaaatcttt gtatatcttt tatatacatt atacgccttc tttattgtgt ttaaattcag
     9721 gtacaatctt taataaagcc tctgaaatat cttcacatat ttgtaaattt tctatctctt
     9781 tattaagcca atcaagatca accttctcat tctttgctac aaaaatactc tcatattgcg
     9841 ttttagcatc attttcatca atcaaaagct cttcataaag cttctcacct tttcttaaac
     9901 ctgtgatttt aatttctaaa tcattgcgat tagaaagtaa aagcattttt ttagctaaat
     9961 ctatgatttt cacaggccta cccatatcca aaacaaaaag ctctcctcct tttgcgatag
    10021 ctccagcctg taaaacaagt tgcactgcct cagccacaag cataaaataa cgcactatat
    10081 cagggtgcgt taaagttaaa ggctcattat tggcaatttg tgctttaaat ttcggtatca
    10141 cactaccact agaacctaaa acattaccaa aacgcacaca agcaacttca aaattttcat
    10201 cactcatact taaagtataa agctcgcaaa ctcttttagt acagcccata atatttgttg
    10261 gtcgcactgc tttatctgta cttatcatca caaatttagc tactttattt tctttagcac
    10321 tgtcgcataa aattttggtt cctaaaatat tattgattac tgctgaatgt ggattttgtt
    10381 cgcaaagagg cacatgttta taagcggctg catgtaaaat aagctcgggt ttataagttt
    10441 ttaatacctc atctaaacgt tgcttatcta aaatactcag taaaatagga gtaatttttt
    10501 ctttatataa atttaaatca tcattgatct tataaagatt atactcacta tgatcaacca
    10561 taataagatg cttagcacca aatttaatac attgcttaca aagttcactg cctatagttc
    10621 cacctgctcc acttaccaaa actaccttgt cttttaaaaa agccgccaca gcactatcat
    10681 ctaaatcttt tggttttcta gcaagcaagt cttctatact gatatctctt gcttcgtttc
    10741 ttgtaaaaga aaatattttt acatcgcaaa taccataagc tacaagttct tcaaaaagtt
    10801 ttttaagctc ttcttgttca agtcttaaag caataatggc agtttttacc ccttgttcta
    10861 cataagattt tattttttct ttttcttcta caataaattt atcacaataa gtccctataa
    10921 gctcttttct cgcatcaact acgcctacag gaaaaagccc taaagaacct tcttttgcac
    10981 cttttaacaa atgcaaagcc ttagaagttg cccctagtac aatacaagga gtttcttctt
    11041 ctttcattct agaaggttta aaatccacaa gcattctttt gctaattctt aaagtaccta
    11101 taaacatata agaaagaaca aaatctatca caatagcact tcttggaaaa ggattaaaaa
    11161 aatcactaaa aaaataaaaa ataagaaaaa aacaaaactc agctaaaagc aaagcgataa
    11221 aaatctttct tgcttcattg agagaaaaaa atctccaagc tactttataa attctaaaaa
    11281 caaacaaaaa tgaaagtttt aaaacaagca aaataatagc agaaaccatc ataccatgat
    11341 aaaaaatact cggaatatct ccactaaatc tcaaagaaaa agccagataa acgctaagta
    11401 aaattaaaac aatatctgaa gttaaaaaaa atgctaatct tttgctttta taaaaaatca
    11461 ttttaagcct ttatgctctt taagatcagt tttgaaattt cataaacatc atctttactc
    11521 atcgccgtgc cacttggcaa acaaattcct ttttggaaaa ataactcact attgccatta
    11581 agataagcct tagctccttt aaatacttct tgagcgtgca tagctttcca taatggtctt
    11641 gtttctattt gttcattttt caaatcttct atgagttttg aaatttttgg atgcaaagta
    11701 atattttttt gactgatatt tatatctttt tgacaagaat taagttcatt tttatcaaaa
    11761 tcaatcaaag ctgtacttaa ccagcgattg cttcttgaat tttctaattc atctaaaaag
    11821 ctaaaacact ctcctaaaaa ttctttatac cactcataaa tttctctttt tttaagcact
    11881 ctttgttcta aaacctccat ttgtgctacg ccaatagctc ctaaaacatt gcttaaacgg
    11941 taattataac cataatctaa atgttcataa tgcaaacaat tttccctagc ttgagtgcta
    12001 taaaatcttg ctttttcaat cttttcttta ttttttccta taagcatacc tccacctgaa
    12061 gtggtgataa ttttattgcc attataagaa taagctccaa attctccaaa agttcctaaa
    12121 gctttattct tataaaaact tcctaaagct tcagcagcat cttcgattaa aacaatttca
    12181 ttttctttgc aaatttcaac aatttcatcc attttagccg cattgccata aagatgagtt
    12241 aaaatcaatg cttttggttt tttttcacat tctttaatag caagctttaa taaatctaca
    12301 tcgatattat aagtttcatc acaatctata aatacaggtt ttgctttaag ataacaaata
    12361 ggtgctactg aagcgataaa agtaaaagaa gaagccaaaa caatatcatc ttgttttacc
    12421 cctgccaccc ttaaagctaa atgcaaagcc gctgtggctg aatttaaagc taaggcattt
    12481 tcacttttac tgtaagcctt gacactttgt tcaaagcgat ttacaaattc acccaaaggt
    12541 gctatataat tgcttttgaa aacttcttct atgtatttta attcattacc acccatatgc
    12601 ggaggagaaa gaaaaaatct catgatttat cctttgtgta aaacaaaatt tttataaatt
    12661 gactctattt tacctaaaaa aatttacaaa gaatcaaaca aaaatctttt tataatcatt
    12721 tcatattttt ctttttgcag gtactcccac aaaaacacct ttttcatctt gatttttaac
    12781 taaagttgct ccaccaccta aaatactatc atctgccaaa cttaaattag gcaaaacaca
    12841 agaattaatc cctaaaaaac aatttttacc aatttttacg ttacccgcac atttagctcc
    12901 cacactcaca tgagaaaatt cccctatcac acattcatgc tcaattacgc ttgaagtatt
    12961 taaaatcaca cctttttcta ttttagcttt agcgttaatc actacataag gcatgattaa
    13021 aattcctgca ctttcttcca cgattgcgct aggacttata agtgcacttt tatggataag
    13081 attgacaatt ttaaagccat tttctgaaat tttttgataa atcttttttc gaatttcatt
    13141 gtttcctatg gctataaaaa aatcatattt aggtaaggta ctttcaaatt tcattccttt
    13201 aaaatcatct aaaaaaatac attctttata acccatattt ttagccacat cttcacaaac
    13261 aagcccatga ccactagcac cataaatata aattttttca gttcttgcca ttaaatttct
    13321 ctgttgtaac atggccttct ttgcttaccc cacttcgttt taaaaccttt aaagctgtta
    13381 aaaacatgat ttttaaatca agcaaaaaag aaatattttt cacataatac acatcaagtt
    13441 cgaatttttt ctgccaagaa atagtatttc taccatttac ctgcgcccat cctgttatac
    13501 ctggacgcac tttatgacgc aatttttgct ctttattgta aagaggcaaa tactcaacca
    13561 aaagaggtct aggtccaaca aaactcatat ccccttttaa aacattaaaa agttgcaaaa
    13621 gctcatccaa acttaagctt ctaacgattt ttccaaaagc tttcaaacgc aattcatcgc
    13681 ttaataaccc acccttttca tctctttcat cgctcatggt tttaaattta taaattttaa
    13741 aaattttttc atctaacccg ggacgatttt gggtaaaaat cacacttcct tgagtgattt
    13801 ttaaaagtaa agcagtgatt aaaatcaccg gagaaaaaag cactaaaagc actaaagcta
    13861 aaataaaatc aaaaattctt ttaaaaactt tttcatacat tcttaattac cctatcataa
    13921 agttttaaat aacgctgtgc gattatattt tcatcgtatt gtaaagcatc ttgggcggca
    13981 tttttagcta aatttaatct taatttttca tcttctaata aaagtgaaat tttttcgctt
    14041 aaatctttag cattttttgt ttttgcccaa agtccatcat aagcattaga aatagcctcc
    14101 acacaacctt cacaatcact caccactata gccttaccgc aagcttttgc ctccaaaaca
    14161 cttacaggaa agccttcttt atagcttggc aaaacaaaaa tatcacaatt ttgcaaaagc
    14221 tcgactatat cacttctagc acccaaataa tgcaccgcgc cagagtttaa aaactccaaa
    14281 cttgcacaag aaggattttc atctcttcca ccaactaaaa caaaatttgc tttgtctttt
    14341 agcatagtag cactttcata aaattctttt acacccttat gccataaagc tcttgctatc
    14401 ataagtacaa tgggtttttt atctatgttt aaatttttcc aaaaaagctc ttttttttcc
    14461 gattctacat aaataggaaa aaattttttt aaattgatcc ctacagattt tatcacgcaa
    14521 attttatttt ctttaagtcc taaattccgc ataaactcag cattactttc attgacaaaa
    14581 ataaattggt gtgcaaattt aaaacttaat ttataaagac tattaataac aaaacgcact
    14641 aaatttgcct taaaaccttg atctatataa aaagatccca agccttctac taaggcaaaa
    14701 cgataaggaa tttttgccca ttttgctgct aaaattccaa aagtattgct tttgtgtgcc
    14761 gcactttgaa taaaatcaag atttaaattt ttcaaaacct tagcaagata aaaaaaattc
    14821 tttaaaacca caaaaggatt taaactagct cttgaaaact cataaacaat tacttttaag
    14881 ccaagatctc taagtttttg cgtgtattca tcttgcggca ctataacaaa aacttcgtct
    14941 tttctatctt ttaacgcttt tataataggc attctaaaat gataaatact cgctcctgca
    15001 tgtgataaaa atcctattct cattttcaac ccttaaattt taagtttaaa aactttagca
    15061 tctctagaat taatcaccaa gtcaaataaa ttcttatcat aatttcccaa aaaaaacatt
    15121 tgcacataag cactattaaa catggtttta tccattaaaa taaattgtgc gtaaggaata
    15181 gcactatcct ttaaataaaa aatataaaac tgagccttat catcgattgg agtgattttg
    15241 tattcacctt gtttaataga attaatctct acgatactat ttacagaaac cacattatca
    15301 cctattttaa aacttctaaa atcatcgctt aaaaccactc cgttgctaag ataaatttct
    15361 ccatttttaa catcaagtgg ataagctgtg ctaaaggtaa aaggtttatc caaaactcct
    15421 gtatctaaat taataaaaga aaaactagcc accgtagaaa aaatcaaaga cattctagcg
    15481 ggcatataaa gataaatatc acgagttttt ggtgtatcga ttttaaaatc aggttttgat
    15541 aatgaagcta gaaataaatc cacattgctt tgattataat ctttcatcat ggcttgtaaa
    15601 atgtctgatt ttaaaatatc attttgcgga gcataaaagc ttttttctgt atattctaca
    15661 ctaagtcttg ccatattagc cgcagcttgt tcatctttgc ttaaagcaaa agaagggaaa
    15721 aaattatcct tacctaaatg ctttccacca tctactaaag ttttcacatc gctataataa
    15781 cgcacaggat aaccataatc ccaccaagtt accacataat cttctctatt ggctatattt
    15841 tttaattgat ttaataatga tgcttcattt tgagaaaaaa ctgttggcgc tttatagttg
    15901 taaatatgga taaatactgg agctaaagtc aaaatagttg caaaaacaat acaaacattt
    15961 gaagttaatt ggctatattt tttaaccaat atagccttaa actcgctcaa taaaaaacca
    16021 aatcctaaag ccattacagg tacagaataa atggtaaatc taagcccccc ttttaaggct
    16081 aaaaacccaa gtaccaatat aggtaaagcc ataatcatac ttttatgttt tctcaaaagc
    16141 catacaaaac caaacaaaga aaacaagaaa acaatttcac taccactaat tcttcgcata
    16201 aattcgctaa aatctacatt ttcaacttct tgtatggttt gattaacatt aaaatacata
    16261 aagccctgtg ttaaattcgc actttcatca cttctaaaaa tataaaattt aagctgataa
    16321 agtataggat caaccccacc acttaaaatc aaaaatatca aagttgcact acctaaaatt
    16381 cctataatca taaaatttaa gcgtttttgc tctaaggcga ataaagcaaa aagtattact
    16441 ataatggcac tttgataaaa ccatgctata tttgaaagag taagagaaga caaaatcaca
    16501 gctatataaa aaatcttttc ttttctatga aaaataagtg tataaatt
//
LOCUS       DARGED010000026        16152 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.026, whole genome shotgun sequence.
ACCESSION   DARGED010000026 DARGED010000000
VERSION     DARGED010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.026"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..301
                     /locus_tag="SFZ84_000675"
     CDS             <1..301
                     /locus_tag="SFZ84_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8202818.1"
                     /translation="EHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAES
                     IKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            complement(343..2709)
                     /locus_tag="SFZ84_000676"
     CDS             complement(343..2709)
                     /locus_tag="SFZ84_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG8202819.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDKA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKGVSNWQNLCKSKNQILNQ"
     gene            complement(2731..4119)
                     /locus_tag="SFZ84_000677"
     CDS             complement(2731..4119)
                     /locus_tag="SFZ84_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG8202820.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLTTLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSIAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLIACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVYNIKFSFIQNFILAFC
                     VCVSIFAILLML"
     gene            complement(4109..5596)
                     /locus_tag="SFZ84_000678"
     CDS             complement(4109..5596)
                     /locus_tag="SFZ84_000678"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG8202821.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAANFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGTLFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5598..7388)
                     /gene="nuoL"
                     /locus_tag="SFZ84_000679"
     CDS             complement(5598..7388)
                     /gene="nuoL"
                     /locus_tag="SFZ84_000679"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG8202822.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIFCSLLVALSTF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSIVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYDIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(7390..7686)
                     /gene="nuoK"
                     /locus_tag="SFZ84_000680"
     CDS             complement(7390..7686)
                     /gene="nuoK"
                     /locus_tag="SFZ84_000680"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG8202823.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGIALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7683..8201)
                     /locus_tag="SFZ84_000681"
     CDS             complement(7683..8201)
                     /locus_tag="SFZ84_000681"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG8202824.1"
                     /translation="MIENLAFLFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLTMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     TLTHKELKKEKQ"
     gene            complement(8198..8839)
                     /gene="nuoI"
                     /locus_tag="SFZ84_000682"
     CDS             complement(8198..8839)
                     /gene="nuoI"
                     /locus_tag="SFZ84_000682"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG8202825.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGIEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMQERALENQNTQEQGENK"
     gene            complement(8849..9847)
                     /gene="nuoH"
                     /locus_tag="SFZ84_000683"
     CDS             complement(8849..9847)
                     /gene="nuoH"
                     /locus_tag="SFZ84_000683"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG8202826.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGFIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9840..12302)
                     /locus_tag="SFZ84_000684"
     CDS             complement(9840..12302)
                     /locus_tag="SFZ84_000684"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG8202827.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKSNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(12299..12991)
                     /locus_tag="SFZ84_000685"
     CDS             complement(12299..12991)
                     /locus_tag="SFZ84_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202828.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12988..13215)
                     /locus_tag="SFZ84_000686"
     CDS             complement(12988..13215)
                     /locus_tag="SFZ84_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG8202829.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(13212..14438)
                     /gene="nuoD"
                     /locus_tag="SFZ84_000687"
     CDS             complement(13212..14438)
                     /gene="nuoD"
                     /locus_tag="SFZ84_000687"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG8202830.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14440..15234)
                     /locus_tag="SFZ84_000688"
     CDS             complement(14440..15234)
                     /locus_tag="SFZ84_000688"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG8202831.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(15231..15734)
                     /locus_tag="SFZ84_000689"
     CDS             complement(15231..15734)
                     /locus_tag="SFZ84_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG8202832.1"
                     /translation="MAEHQINYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            complement(15716..16105)
                     /locus_tag="SFZ84_000690"
     CDS             complement(15716..16105)
                     /locus_tag="SFZ84_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG8202833.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         6048 a         3037 c         1952 g         5115 t
ORIGIN      
        1 agaacatggt agaggctttg cagtggtagc tgatgaagtt agaaagttag ctgaaagaac
       61 tcaaaagtct ttatcagaaa ttgaagctaa tactaattta cttgttcaat ctatcaatga
      121 tatggcagaa agtattaaag aacaaactgc aggtatcact caaatcaatg atagcgtagc
      181 tcaaattgat caaactacta aagataatgt tgaaattgct aatgaatcag ctattatttc
      241 tagtacagta agtgatatag ctaataatat cttagaagat gttaagaaga agaggtttta
      301 atcttagata actagctaaa aagctagtta tctctaattt acttattgat ttaaaatttg
      361 atttttactc ttacataaat tctgccaatt tgaaacacct ttgatttcaa gacattgttt
      421 taaactttct ttttcagctt gtatattttg cattctttca taagttaaag cttggatata
      481 taaagctctt gccttatcct catctgaaag ttttaattta agcaaatctg ttaaaacagc
      541 taaactttct tcatttttat tgattttagt caaagcatca agatatataa attctaaatt
      601 aggactaaaa agatttatac ctttaaaatt ttgatagtca atggccttag gtgcgtaagt
      661 taaaatagtt gtttgcatat tatgatcatt agcgtaagaa agtaaagcat cataagcttc
      721 caccatacta aaattcattg gaaaactttc taaaatttgc aaaattttaa tggcttgatt
      781 atagtcattt aaacgcaata aagataaaaa ttgcaaataa taagccttaa aattctcatc
      841 atcacttttt aaaattctag aattagctat gtctttagaa attttaatca cctgaggata
      901 ttgtttattg tcaaaaagaa tagatgcttt ttgaagaccg taaaatatag aatcttcatt
      961 ataattttta tctatataat caagtgcttg ttcaacatta gaagttctga taagacaagc
     1021 taacatttgt tttttattct caattttctg acctatatca taagcactaa aacgcataaa
     1081 aatatttgca gcattgatac aattatcagc ttttatcgca ttttttaaat cattaatggc
     1141 tgctttctct aaaaattgag tagcatttgg aattttttta ctttctataa gatctttata
     1201 agctaaaata gcactaaaat ttccctcttt ataataaagt gcaacatctt catctaaagc
     1261 tttatttgca atattctcat ctttatttgc atattgcttc attaaatctg tataacgctg
     1321 atgcaaaaag cttgcattat tatcacctaa agcaaagaat acctcatcac ttgctttttt
     1381 aatttcatct aaatacttac catctaaata atcatccata tacaaatcaa ggtatttttt
     1441 agcatcacta gatctgttag catgtgataa aaccaaggct aaatctttta aagtttcttc
     1501 ataacttgga tcaagtttgg acattttagc aaaggcatct tcataaatac ttgcacttat
     1561 atcaaattgt cccttttgat taaataattt agcaagttct aaagatcttg gaatatcttt
     1621 tccaaaatat tcaggattgg cttttaaaat ggtattaata tattctatag ctttatttac
     1681 ttgctcattt gaaagcaaat tctttgccaa actcatagct gctcttgcag ctaaatctaa
     1741 attttttgta ttaaaataag tattttcata aatatttaca gctttttctt tttcatttaa
     1801 attataaata tagtctgcat aatcaagttt tgataactga gtaaaataat tattaggttg
     1861 ttcattatcc aaaatcgaca ttgtatactc tacatcagca cgctgagcta aagcgatata
     1921 agttcttaac attatatgta aaacttctga aaaattttta tcacttgtaa aagtacgcgt
     1981 ccaattttta gcatcatcaa tcatcttttc taaaatttgt tgatcacgca tgcttggatc
     2041 ttgagtgtaa agtttatttt gagctcttaa tttataaagt ataaattcac tagtaaaaat
     2101 actgccacga tatctattga tagcattttg tgcatcaatc accacttgat tgtaattagc
     2161 cttatcgtat tcttttttga tgcgtaaata agtattgata tctgcacttt gaggaataac
     2221 aacaggatca gaatttaaat ccaaagctcc aacataaggc aaactctcat gtggaaaatt
     2281 gatattaaaa tcgagtccat catagtcttt aataggtgct agttctggtg taaaaataaa
     2341 agtaaaagcc ttacttttat gcgaacttga tgaactgagt tctttatcta tataaatatt
     2401 ttgagaagtg tcaaacattc ttgcttgtat ttttggcaaa atgatcattt taattttttg
     2461 agcttcttgt ataaatttta aatcaaaagc agaaaaactc tgatctttta atttattatc
     2521 aaccatacct gcaatatcac attcaaaatg aacttttgct tcggtaataa atttttgaca
     2581 tgtaaattct aaatcattac tcgcatgtaa aactgcaaaa gcttgattat tttcgcgacc
     2641 cgtgtttaaa acaagctcaa aagcaaaagc atttaaaaaa cttaataaaa ttaaaaataa
     2701 tattctcata aaataattat agcaaaactc ttataacatt aacaatatag caaaaatgct
     2761 tacacaaaca caaaaagcta aaataaaatt ttgtataaaa ctaaacttaa tattataaac
     2821 cctatcattt ttcataaata aaacatgaat taaaatcttt aaatacgcat aaagcataat
     2881 aacagaagat aaagccacaa aaagcgccaa ataccaatat ccatttaaaa ttgctgtatt
     2941 taaaatcata aatttacccc aaaacactcc aaaaggcggg atacctgcta aagaaagcac
     3001 actaatgctt aaacaaaaag caattaaagg ttttttaacc aaaagcccat ttaaactctc
     3061 ataagaatta ttctcataat tacttaaaat cataaataca gcataatttg caaaagcaaa
     3121 taaagtccaa tatccaaaaa tagcaagcaa aattccatca aaattttgtt cttttaataa
     3181 aggaatgcaa gctatcaaaa ccaaagaaga atgcactaca gaactataag caaacatttt
     3241 tttgatattg ttttgactta aagccgcaaa agcgcctata agcatagaaa aaatcgctag
     3301 aactattatg atatattcaa aacctgtatt atttaaaaaa tcaaacaaac gaataaccac
     3361 aaccaacatg gcaacttttg gcacaactga aataaaagca accaaatttg tatgtgctgc
     3421 ataatacaca tctttaagcc aaaaatgaaa aggtgccaaa gaaagcttga ttgcacaaag
     3481 aacaaaaatc atcactccag cacccaaaag catgggatct ttttgaaact cattttttaa
     3541 cgctaaatta gcagataaat ctaaagttcc tgtttttaaa taaataaaag ctacagccat
     3601 aacaaaaaat ccagctccta cagccgctat actaaagtat tttatcgcac ttgaaatagc
     3661 attatcactt ccacgcattg ctattaaagt ataaagcgct aaagaagaac tttcaagtcc
     3721 tataaaaata agtactaaat ttgagcttga aaccatcaaa agcaaagatg caatcataaa
     3781 taaaaataaa gcataaaatt caccttgatt ttcttctttt tgcattaaaa gatataaaaa
     3841 tgaaaaacac aaaatcacca aagaagcata aaatgaaaca atatcattat ttaaagtagt
     3901 caaaaaagct tttgcttcta aaccttgagc atttgcatta tttaaaatca aaaaagcact
     3961 tacaatcaaa gacaaagaac ttatgccgat ataaaacgat cgatgaaatt tccaaaaacc
     4021 agagcaaagc aaaagaacta ttgcagttgt aattaaaaat aaaaatggat aagataagct
     4081 tatatttaaa agttctaaat ttaaaaaatt atttaacatt tgcctctcct attttagata
     4141 aaaaatctaa agtattttgc tcaacagctc taatattcat tgtttttata agattatcca
     4201 catctttttg tatcggcttt aaaagtatat ttggcataag ccctagtcca aaaatcatta
     4261 ctacaatgca cacaagcgct actatttctc taaaacgtaa agaaaaaccc tctataaagc
     4321 tttgtttttg catgaaaaat atttttctaa atactgcgaa catataaatc gctcctaaaa
     4381 taatcaccaa acctgccaac aaagcgtaaa ataaattaat ctttgctata cctaaaagaa
     4441 ttaaaaactc tcccacaaaa gaaacagtta aaggcaaaga aacgcttgcg agtaaaatta
     4501 acataaagaa aattgaaaat aaaggtgctt ttttggccaa agaatggtaa aaagaaatat
     4561 cataagtatg atatctttgg tataaaagtt caaccattaa aaataaagtt cctgttacaa
     4621 taccgtgtgc aaacatataa aaaactgcac cactaatacc caaagcattt aaagaaaaaa
     4681 ttcccaaaat catcacacca agatgtgaaa tagaactata agcaatcaat tctttaatat
     4741 tttctgctct ataagcaatt aaagcattat aaacgatact tactatacat aaagctacaa
     4801 ttaaaggcat aaaatacaca ctcgcatctg gaaaaagtgg taaacaaaaa agtaaaaatc
     4861 caaaaggagc cattttaaaa actacaagca ttacagaaac aagtataggc gaatttgcat
     4921 aaaccttagg tgcccaagta tgaagtggaa ataaaggagc tttgatagca aaagcgataa
     4981 aaaatgctcc aaaaagtaaa agttgctctg taaaatttgc tgctgaggca ttatttttcc
     5041 aaatttccaa gtcaaaagtg aagatattta aaagctgata atttaaataa gcttgataaa
     5101 tcaatgctac aagcattaaa attgaacccg caaaagcata gataaaaaat ttcacccctg
     5161 ctctaaaatc tttaccataa actcccataa tataaagcaa aggcaaaaga gaaaattccc
     5221 aaaaaacata aaacaacaaa ccatcttttg cgctaaaaag tcccataata gcaaattcta
     5281 aaaagaatat acaagatata agcgcttttt gttctagttt caaaaataaa aagcttaaaa
     5341 atatcatcaa agaacttaaa agcatcaata caagtgcaat actgtctact cctacatgaa
     5401 agctaaaaaa tttcaaaatt ttaaaagaga gattataatc aaagcttacc ccttgtaaaa
     5461 aatccgcaaa aatatccaaa tttaaagcca aaatcataaa acttacaaca acgctaaaaa
     5521 ccttaacgcc tccgcgattt aatagcaaaa ccacaaaagc agaaattaaa ggaaaaaata
     5581 tcaaataatt tagcatttta caccatccat actaaaatca acaaaatcac aaaagctgcc
     5641 accaaaaacc taagcattaa gtttaagctg tttggcataa tcattttttg tgaaatattt
     5701 tgagaataca aagcaatttt ttcaactatt ctatcaaaaa tataaagatc acaatgcttt
     5761 aaaatcgcac ataagctttc atattttgaa acgataaatt gatgataaaa cctaggaata
     5821 aaataatcat tacttaaaag tttatgaatt ttattttctt caatactttc cttaaaccaa
     5881 gaatttttat aagcaaaaat agccaaaatt gcacccaaaa tagctgctac actcgcacaa
     5941 atcattacaa tttgattttg cgcatcaata aaaactaatt ttgtgcttaa atattcaaaa
     6001 aaactatgtt cgaaaaatcc tgcaataata gctaaaacca tcaaaggact catagccaaa
     6061 agtgcgattt tacttgcttc atgtggatgt tcatcatgtc ttgcaggggt aaaaaatacc
     6121 aacattaaaa gtctaaagct ataaaatgct gttaaaaaag ctgcgattaa gagcactaaa
     6181 aaaataccat ggtgaaaaga aatgaaagaa tatcccaaaa tcaaatcttt agagaaaaat
     6241 cctgcaaaag gataaattcc tgctaaagct aaagatccta tacacattaa aatagctgta
     6301 atttttaaag gtttaaaaag tccacccatt tttttaatat ctaatttatc attcatagca
     6361 tgcattacat ttccagcgcc taagaaaagt aaagatttaa aaaaagcatg cgtagctaag
     6421 tgaaataaag ctatatcata agccccaagt cctgcagcca caaacatata tccaagttgc
     6481 gataaggtag agtaagcaat aatgcgtttt aaatccctaa ccaccaaagc catagaggct
     6541 gcaaaaatcg ctacaaaagc tccgagtaag gcaataatat aagaaacttc aggaactaaa
     6601 tcataaagcg tactcgcacg aattaccaaa taaacccccg ctgttaccat ggttgctgca
     6661 tggattaatg cagaaacagg agttggccct gccatagcat cagcaagcca agtgtgaaaa
     6721 ggaaattgtg cagattttcc catagcccct ataaataaac aagttgcgat taagatcaaa
     6781 gcattgtgat ctaggctttg tgccatggaa aaaacttcat catattttaa agttcctgct
     6841 tgcaaataaa gccaaaaaat tcctaaaagc atacccaaat ccgcaatacg attcataata
     6901 aaagcttcat tagccgcaaa agaataagta tcatttttat accaaaaacc tatgagcaac
     6961 caagagcaaa gcccaacgcc ttcccaacct acgaaaagtc ctaaaaaatt atcactcatg
     7021 actaaaaaaa gcatagaaaa gacaaaaagc cccaaataag caaaaaattt attaaaacct
     7081 tcatcatgag ccatataaaa aatactataa aaatgcacac aagtggctac aatacctaca
     7141 atactcatca tagtaagcga aatagcatct atatcaaaac caaaatttac tccagcaaac
     7201 cattcaaaca aactcacatt aaaagcttca ttgcaaaaaa gcaaatacaa agaacaaaaa
     7261 gtactcaaag ctactagaag tgaacaaaat atccctacga attgtttttt ctcactcaaa
     7321 gcaaaacaac ttgcaaacaa aaaagctaca aagggactaa aaagagaaat caaagccaaa
     7381 ttttgcatac taagcctcca cttcttttaa gctttttaat tctaaagtgc cttttcttct
     7441 ataccaaagc acacacaaag ctataccaac agctacttca caagccgcta cacccatgat
     7501 aaaaagcgca aaaacctgtc catttaaatc attgtgcatt ttagaagctg ctactaaagc
     7561 taaattagca ctatttaata aaatttcact cgaaataaaa agcataatga gattttgtct
     7621 ttttaaaatc cctacaagcc ctatgacaaa cattaaaata gcaacgaaaa aatacttttc
     7681 tatcattgtt tttccttttt aagctcttta tgagtaagag tgatagcaca aactaaagcg
     7741 atcaaaagca aaatagctat aaactcaaaa gctaaaagat attttgaaaa aatcgctaaa
     7801 gccagttgtt tattaaaatc aaacaaagca ggatcattta aaggcaaatc cgtgctgata
     7861 ttttggtatt taaaacctat aagcatagtc aaaagtaaaa tcgcacttaa aaccaccaaa
     7921 gtaaaaaaac tttttttagc tttaagttgt tctttaaatt ctttagaagc atcaaaaaac
     7981 atcatcgcaa aactataaag tccaagtaca gctccactat aaacaataat ttgtatcacg
     8041 cctaaaaact ctgcatcaag caaaaaataa aatcccgata aaaacaccat tccacctgct
     8101 aaagccgaaa gagaataaag catattttta cttaaaaccg cgatgccaaa aaagcctaaa
     8161 accactacac taaaaaataa aaaagccaaa ttttctatca tttattttct ccttgctctt
     8221 gtgtgttttg attttctaag gctctttctt gcatcacatc ataataattt ggtgtttttt
     8281 taacccacaa atttgcatcc tttctaagac ttcctgctcc ttcaaattca acttgatttt
     8341 taagcttatc aataggagtt aaaaaatctt gcttatagcc aaaataagac ctttgctcgg
     8401 ctgcattttc atactctatt ccatgtacta tagcaagttc aggacaaacc tcagcacaaa
     8461 aaccacaata aatacaacgc cctaaattaa tactataatt tcctactttt ttacgcccat
     8521 tttcatctaa agaagtttcc attctaatac aattgctaat gcaaattttt tcgcaaagcc
     8581 cacaacctat acatctttca ttttcgcttt ctataaaacg catcaaacga tgaacagcac
     8641 ggtaacgatt gtcaagcttt accttttcaa aaggatattt aatcgtagcg ctattatttc
     8701 tcttaagtaa ttctctcatc atcacaaaaa gccctacaaa aagctctagt ttaacgcttc
     8761 tacgcaaagc ttgtgaaatt ttctcccaag tgctaacagg agtttttctt ttctcatcta
     8821 ctaaataata atttttcata tcaaactcct ataaaagaac tgtcaaagca gtgattaaaa
     8881 ggtttaaaac agctaaaggg attaagatca aatagcacat tttcatcact tgatctggac
     8941 gcaattgcgg aaaagcagct cttgcccaaa aataccaaaa gaaaataaaa cttgatttta
     9001 ctatcatcat aatccaacca ggaataatcc aaaagctatt aaaaccccct aaaaacaaaa
     9061 gagtgaccaa aatagctcca gctatcatag aagtatattc acctatgaaa aacatacccc
     9121 atcttaaacc cgaatactcc gttccataac ccgctacaat ttcagcatca ttttccgtca
     9181 aacaaagcgg agttctatta gtctctataa ataaagcaat tataaaaagc acaaaagcca
     9241 aaggttgttt aaaaataagc caagaaaaaa atccatcgct ttgataattg ttaatatcca
     9301 ccaaagaaaa agaacctaca agcattataa tagcaatcaa agctaaagct cctacgcttt
     9361 cataggaaat aatcgctaca agccctcttg cagcccctaa aatcgaccat ttattattac
     9421 ttgcaagtcc acccaaaaac accgcataaa agcaaagtcc tgaagtaccg atgacaaaaa
     9481 gcaaagctac attgatatct gccactatag gctgaataac ccttccaaat aaagtaaatt
     9541 caggtagcat aggaatagct gctaaagaaa taaaagcaca aatagcagaa atcaaaggtg
     9601 ctatagcaaa aataaatttt tgcgaatttg aagggattat atcttcttta gtaaaaagct
     9661 ttatcatatc agctacaagt tgaataaacc caaaaggccc taccatatca ggccctatgc
     9721 gtctttgaaa ataagctaaa acctttcttt cagcataagt tgcaagacct gctaaactcg
     9781 caaatattgc aatgataata atacatttaa tcaaagtctc taaagcaaaa aaagcaaaat
     9841 cactcatggt ttgctcctaa tttttctaaa ttcgccacaa caaatctttc atcaaaaaag
     9901 cttagcgtgt caagtttttc atcaaaatac ggcaagaaag ctccattttt tatatcctta
     9961 tccacacgca cactaaggct taattcttta tcttttattt taagttttac aagatcttta
    10021 tcttttaaat ttttctcttt agctaaattt tcacttacac ctaaaaaaat cacctcatta
    10081 atcgcactag cacgatttga aaatctacca aattgatagc taggattagc actataaagc
    10141 aaaatttcat cttcttttag gcttaaattt tcaaaatttg gagagatgaa ttctttttta
    10201 gcaacttgtt tgaaacattc taaattaagc tcatatcccc ttttacaatc gcctgcattg
    10261 gtataaaaat tgtctaaatg atcaaaatca atcggagaaa aacctttatt tatagggagt
    10321 ctcttagtat aatttatagt atattcctca tcaaaaccta aagcattagc caaatcattt
    10381 aaaaaatatc ccttaaattc taaagcagcg ttagttggta ccactctttt atcataattt
    10441 aaaaaagttc cttcttgctg atttaaactc gcactagcta aatttgcatg ctcttcataa
    10501 gaaaaactaa aatcaccttt ttcattgtag cctaaagtct tgccttcttg tgtattgtta
    10561 tccaaatcac aaatcatagc cacacctaag gtattagtat gcgtaggatt taaaaagact
    10621 ttaaaaggag tggtattttg gatcaaagca agtaatttag caagtttttt cgcattttta
    10681 tgaaaataaa aatcactccc tataacaaga gtaaaatttg cttttttaag caataaatct
    10741 tctaatttat cttcatctat gcctaaattt ttagcaaaaa cagagcgttg tacttctatg
    10801 ttgcttttca ctttcttagg cacgactttt tttacttctt tttgaatttc attgccttct
    10861 tcatcttttt ctatgacttg ttctacaact tcttcgttga tactttcttc tatttcttta
    10921 ttttcactaa caaaaaactc tgctaaatga gttttgatac cttcatcttg gctaaatttt
    10981 tgaagtaaaa aatataaaat ttgctcttca tcgccacttt tatgaatgtg cgagataaaa
    11041 tttttagaat attttgctat acccatatct tccataggat gaaaataaag ccctgagcct
    11101 ttattcatca ctaaagcatt attgatttta tagctaagcg ttggagcatc atatcttaaa
    11161 agcattccag ctacaaccaa aaaatcactt tttgttatat cttgagtatt agcgctataa
    11221 aactcaccag aattagcgat aaattcttgt aaaaattctt taaatttcaa agcttcttca
    11281 ttgatcaaag aaagattaaa tttctttttt aaattttgta aaatcaaagc ttcttcattg
    11341 gtaataaaac tattaaattt aatgttttta atttcatttt tctcaaaaag ttccacaagt
    11401 tctttaaagg ctttttcatc tttatccgcc tcattttgcg tatcaaaagc aaatcttgca
    11461 gccttattta aacttgcaaa ggcaaaatca ttactcacac gataaatttt ttctttttga
    11521 ttgctaatgc cgctttgctt aatatcataa tacatcaact cacaatcgct tgaatgcgga
    11581 tttgaagcag ggattctttt aagttcccaa atatttgaag tgtattgaaa tttcgaacct
    11641 attaaagctc ctgttgggca tacgcttgta cattctccac aaaatgaaca atcaagcgtg
    11701 tcgccatttg tagggcctat caaacttttt tgaaatttag tccaaatcgc ataagcatct
    11761 tttcccatgc tctctttaaa gctattatcc acactatctc cgccacgagg aacagtcttt
    11821 aaagcacttt ctccgatttt atccttacaa actgtaatac aacgctcaca cactatgcaa
    11881 agtgcgggat cgtaattaat cattccccaa tgtttatgcg gtttatgcgt gtctttaatc
    11941 caatattttt gaacatttac acgactttta tgagtgaaat tttgcaattc acactcgcct
    12001 gatttatcac aaactccaca ttctaaagga tgattgatac aataagcttg catgatctca
    12061 tttctttcat cccaaagatt ttgtaaatca ctttctacaa ccatgccctc ttttgcttta
    12121 gtattgcaag aatatacctt tttaccatca gcttcaacca tacacatacg acaagccaaa
    12181 gtaggactac agcccgaaag atagcaaatc gctgggataa aaatatcatt tcttcttgct
    12241 atatttaaaa tatattcgcc ttcttcaaag gcgcaatcta taccattaat cttaactgtc
    12301 attttgcttc ctttatgcga attggagtaa aatcaaaacc attgttttca taatttaaaa
    12361 aagctatagt gccttgtaaa ttttcatcta aacaaagctt ggttttaaga ctaaaatctt
    12421 tagccaaaat ttcaacttca ctttgatctt tgcattttgc aatttgtaaa aattgctttg
    12481 aacaatgtaa atttttatct tgcaaatttg ctctaaaaag cactaacccg tcataattat
    12541 cgagttcttt tagggtgttt aattttgcct ttttaaaatc gcattcttct tcatcgctat
    12601 ctaaaatctt taatccatat tttacactta ggaaattcaa aaaatatttg atattttcac
    12661 tatctttata agaatggata tttttatcta taattaaata cttagtctct tttaaaaaag
    12721 caagcacttc gcctgcttct tcctctccaa aacaagattc agcacttaaa tatccctcat
    12781 ctaaatcgca aaattgtcct tcatcgctta atttacaaag caaggccaaa acaaaactca
    12841 aacttgcaat ttcgcatttg taaaatttag cttttaagtt tttatcttcc aaacaagaaa
    12901 tattaatact atttacacct attttttcac ataaattttt gtttttaagg cttggcatat
    12961 ctaaaaaaca aagagcatta tcataaatca tactctctcc ttttttataa caatagtcca
    13021 atcgacttga ttaaatttca aagaatttaa aagctcacag ccttgttctt ttacaaaaga
    13081 aaaacttttt tcaacaggag aaaaatcgcc gatttcaaaa agcaccacta aaacctcacc
    13141 ttgttttgct tcttttatga tttgtgctaa atcttcaaaa agctctttgc tttttcttaa
    13201 atctaccctt ctcatcgatc tatctcacct aaaactatat ttacattacc cataatggct
    13261 acaacatcag ctaaataagt acctacaagc atttcttcaa aaaacgcaca atgccaataa
    13321 ctaggcgttc tagcctttaa acgataaggt cttcctgtac catcactatg gataaaaaag
    13381 ccaagctcac cttttggact ttcagtaggc acataaactt cgcctttagg gggttttaaa
    13441 ccttgagtga ttaaaacaaa atgctgcatt aaagaataat tctgcgttaa aatttgttcc
    13501 tttgaagcac ttacatactc aggatgcgta gctaaaattt caggtggagt atctttataa
    13561 agcatggcac attgtctaag gattttcaaa ctttcacgaa attcttgcat ataaacttta
    13621 tatcttgcat aagaatcccc ttgcgtagca taaggcacgc caaattcgac ttcattataa
    13681 agcaaataag gctcttcttt gcgtatatcg tattttatgc cacttcctct tagcatcaca
    13741 cccgtacaac cccagtttaa agcttgttct ttagtaacta cacctacatt ttcagttctt
    13801 aaacgccaaa ttctattatc atctaaaaga tcttcataat cttttaaatc atttggaaat
    13861 ttatcgcaaa atgcaagcat ttcttctaaa taattctcag gtaaatcaag cataacccca
    13921 cctattctca tagaagaatg cgtaagcctt gcaccacaat acttttctat caaatccaaa
    13981 acatactcac gttctctaaa gcagtataaa aacacactca tcgcaccaat atcaagcgca
    14041 tgagtggcaa gccaaagcaa atgtgatgtg atacggttta attctaaaag tatcatgcgt
    14101 atcactgcgg cacggcgtgg aatctctaaa ccacaaagct tttcaaccgc tgcacaataa
    14161 gcataattat tcgctgaagc agcgatataa tccattctat cagtagtagg aataaactct
    14221 tgataaatca tattttcagc cattttttcc ataccacgat gcatataacc tatacaagga
    14281 cgcgctttta caacttgctc tccatcaagt tctaaaataa ggcgtaaatt tccgtgtgct
    14341 gaagggtgtt gagggcctaa gttgataatc atttttgagt cttcttgctc aaaagctata
    14401 ttttcataat aaggttttaa cttgctagga atttgcattt taacgccttt tctctaaaat
    14461 ttttgcttca tcacgtttta ctttttttac aaaagccacg ccttcatctt cttgatattc
    14521 ttgtttaaag gaaatttcct tcttttgacc accttttggc acttcatgat aaagtcttgc
    14581 aaaatttagc gtatctttat catcagcaaa accagaatct ctttgttctt cgcccactac
    14641 ttcgcggtat tctttgccaa aaattttatc aatctcatac catcttgcaa actcatcgcc
    14701 ctttaaagga taagttttca aaagcggatg tccaaaccaa tcatcaggca ttaaaatgcg
    14761 ttttaaattg ggatgattta tgatgaaaat tccaaacata tcataaattt ctctctcact
    14821 ccaatttgct cctttaaaaa tatgagccac gctttgcaaa cgctctttta cgcctacaaa
    14881 agtttttatt ctcactctta atcttttttc taaatttaaa agctgataaa acacttcaaa
    14941 accattttta tctgctacaa aatcaatagc acttgcctct gtaaaactta aataccctaa
    15001 agttttaagc atttgcaagg ttttaacatt gtcttctttt ttaatttcta ttacccaaaa
    15061 atcaagctct acaaaggaat ttaaaatttc tacttgagtt tttaaaactt caaaatcctc
    15121 tttaaaaaca ctttcattaa catcagattt tacagtgtgt ggcgcgtgat aaaatctatc
    15181 tttgtaataa ttttgagttt gagcattttt tttatcgcta tactttctca ttataccaac
    15241 cttttaggtg cgattttacg acttgctttt tctttgcgga tctttttttg caaaatcatc
    15301 aaagcaaact gaaaactttc ggggcgtgga gcacagcctg gcacataaat atctacaggt
    15361 ataattctat ccactccttg aaccgtagaa taagtattaa acataccgcc tgtattggca
    15421 caacttccca tagaaatcac ccatttagga tcaggcattt gatcgtaaag tcttcttgta
    15481 aattcagcat gctttttaca taaagttcct gcaataatca ttacttcact atggcgtggc
    15541 gaagctctaa aaatcgttcc aaatctatca aaatcatatc ttgaaccccc agccgccatc
    15601 atctcaatcg cacaacaggc aagtccataa gataaagccc ataaagaatt actcctaccc
    15661 cattgaacta gtttatcaac actagttaaa actacaggta aaccacttgc ataatttatt
    15721 tgatgctctg ccatgcaaac gctccttttt tataagcata taaaaatcca actcctaaaa
    15781 gtacgataaa aacaaaaact tctaaaagtc caaaccaacc taaatcttta aaaatcaatg
    15841 cccaaggaaa caaaaataca acttctatat ccaaaagtat gaagattaag gcgatgatga
    15901 aaaattgaga gttaatcttg ttagcttgtt taacaggaat aggaccacat tcataaattc
    15961 caagtcctaa ttttttacga ttttttgcgg caaaattatt accgattttt gaagctaaaa
    16021 aaaccagtcc aaaaaaaata acactagcaa gtactagcat taaaaaaata ccaaaataag
    16081 gatgcgaagc atctatatga gacatttatt ctcctttttt aaagcacttt aatcactcca
    16141 caacaaaaat ta
//
LOCUS       DARGED010000027        15099 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.027, whole genome shotgun sequence.
ACCESSION   DARGED010000027 DARGED010000000
VERSION     DARGED010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15099
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.027"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            125..754
                     /locus_tag="SFZ84_000691"
     CDS             125..754
                     /locus_tag="SFZ84_000691"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG8202834.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKNYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            872..2218
                     /locus_tag="SFZ84_000692"
     CDS             872..2218
                     /locus_tag="SFZ84_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG8202835.1"
                     /translation="MGQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            2267..3709
                     /gene="pyk"
                     /locus_tag="SFZ84_000693"
     CDS             2267..3709
                     /gene="pyk"
                     /locus_tag="SFZ84_000693"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG8202836.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVENIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDIANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            3807..4442
                     /locus_tag="SFZ84_000694"
     CDS             3807..4442
                     /locus_tag="SFZ84_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202837.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(4473..6935)
                     /gene="pflB"
                     /locus_tag="SFZ84_000695"
     CDS             complement(4473..6935)
                     /gene="pflB"
                     /locus_tag="SFZ84_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG8202838.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DVGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(6945..8180)
                     /gene="serS"
                     /locus_tag="SFZ84_000696"
     CDS             complement(6945..8180)
                     /gene="serS"
                     /locus_tag="SFZ84_000696"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG8202839.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(8191..9150)
                     /gene="trpS"
                     /locus_tag="SFZ84_000697"
     CDS             complement(8191..9150)
                     /gene="trpS"
                     /locus_tag="SFZ84_000697"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG8202840.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKI
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(9147..9644)
                     /locus_tag="SFZ84_000698"
     CDS             complement(9147..9644)
                     /locus_tag="SFZ84_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG8202841.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(9631..11013)
                     /gene="der"
                     /locus_tag="SFZ84_000699"
     CDS             complement(9631..11013)
                     /gene="der"
                     /locus_tag="SFZ84_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG8202842.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGIKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNILIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            11114..12046
                     /locus_tag="SFZ84_000700"
     CDS             11114..12046
                     /locus_tag="SFZ84_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8202843.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLAAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            12043..12858
                     /gene="kdsA"
                     /locus_tag="SFZ84_000701"
     CDS             12043..12858
                     /gene="kdsA"
                     /locus_tag="SFZ84_000701"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG8202844.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVMFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            12855..13319
                     /locus_tag="SFZ84_000702"
     CDS             12855..13319
                     /locus_tag="SFZ84_000702"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG8202845.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            13319..13717
                     /gene="nusB"
                     /locus_tag="SFZ84_000703"
     CDS             13319..13717
                     /gene="nusB"
                     /locus_tag="SFZ84_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEG8202846.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            13714..14553
                     /gene="pyrF"
                     /locus_tag="SFZ84_000704"
     CDS             13714..14553
                     /gene="pyrF"
                     /locus_tag="SFZ84_000704"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG8202847.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            14550..15099
                     /locus_tag="SFZ84_000705"
                     /pseudo
     CDS             14550..15099
                     /locus_tag="SFZ84_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5301 a         2431 c         2245 g         5122 t
ORIGIN      
        1 aaagatgcct tatttttaga aaatctagca cagcaaatta acataaataa caaatatttt
       61 tttagcatgg cttctctttg ctctaaagca aaaaatcatc tagaaatgaa aggatttaat
      121 atctatgttg ctctgtgata ttgggaattc aaatgctaat ttcctagatg ataacaaata
      181 ttttactctt agtatagatc agtttttaga atttaaaaat gaacaaaaaa ttttttatat
      241 caatgtcaat gaacatctca aagaacattt aaaaaatcaa aaaaatttta tcaatcttga
      301 accttatttt ttatttgata caatttatca aggattagga atcgatcgca tagcagcttg
      361 ttatactatt gaagatgggg ttgttgtaga tgcaggtagt gctattacaa ttgatattat
      421 ttctaattct atacatcttg gtggttttat cttaccaggt attgcaaatt ataaaaaaaa
      481 ttatagccat atttcaccac gattaaaaag tgaatttaac actcaagtta gtcttgatgc
      541 attcccgcaa aaaactatgg atgctttaag ttatggtgtt tttaaaggaa tttacctact
      601 gataaaagat gccgctcaaa ataaaaagct ttatttcact ggtggagatg gacaattttt
      661 agcaaattat ttcgatcacg caatttatga taaactttta atctttcgag gaatgaaaaa
      721 gattataaaa gaaaatccca atttacttta ttaaaaatgt tacaaaaatt ctcattgata
      781 tcaaacctta atgaaattta actttttgta aaacaaattc aattaaactt tatttagaaa
      841 aaagtttatt aaaataaaaa aaggaaaaac aatgggtcaa caagaatttg atgtgcttgt
      901 catcggagct ggaatttcgg gagcagcatt attttacgag cttgcaagat atacaaatat
      961 taaaaatatt gctttgatag aaaaatataa tacagctgca acattaaatt ctaagggaac
     1021 gagtaattct caaaccattc attgtggaga tattgaaacc aattatactt tagaaaaagc
     1081 gcgaaaagta aaaagaacag ctgatatgat agttaaatat ggactcatgc aaaatgcgca
     1141 aaataatttc atgttttctc atcaaaaaat ggctctagct gttggagata tagaatgtga
     1201 ttatatgaaa aaacgctatg aagaatttaa agaactttat ccttatataa aatttttcga
     1261 taaagcaaaa atcaaacaaa ttgaacccaa ggttgtttta ggagaagatt gcaatcaaga
     1321 tagacctgaa aatatctgtg ccatgggtgt tgaaagcggc gaggttttta caactgtaga
     1381 ttttgggaaa atgagtataa atctaataga acaagcccaa aaacaaaata aaaatacttt
     1441 cgttgccttt aatcaagaaa ttattcacat agaaaaaaaa gatgatattt ttatattaaa
     1501 aacctcaaat catcaagaat accacgccaa aagcgtagtt gtcaatgctg gggcgcactc
     1561 tttatattta gcacataaaa tgaacttagg tatggataag tcttgttggc ctgttgcagg
     1621 aagtttttat ttaaccaaac aaaaactttt aaatggcaaa gtttatatgg tgcaaaatcc
     1681 taaacttcca tttgcagccc ttcatggaga tcctgatttg cttgctgata tgaacactcg
     1741 ctttggacct actgcacttg ttattccaaa actagaacgt tatcatggtc taaaatcagt
     1801 tccagaattt tttgaagcac taaaacttga taaaactgtt ttaaaagtaa cttttaatat
     1861 gtttaaagat gcaacaatta gaaattacat cttttataat tatctttttg aactaccttt
     1921 tattgataaa agcttatttg ttaaagatgc caaaaaaata gtcccaagtc ttaaagcaag
     1981 cgatatttat tatgcgaaag gttttggagg cgtaagacca caagttattg ataaaactaa
     2041 aggagaatta atgctaggtg aagcaagcat cacagaaacc cctggtatta ttttcaatat
     2101 gactccaagt cctggggcaa caagttgttt aggaaatgct gaaagagatg caaagcttat
     2161 atgtaattac ctaggaatgg aatttaacga agataaattt tcttcagaat tattgtaatc
     2221 attttgtttc tatttttagc tacaataatt tcaaaaggag tttaccatgc ttaaaaaaac
     2281 aaaaattgta gccacagtag gtccagcaag tgaaaaggaa gaaattctac gccaaatgat
     2341 tatcaatggt gtaaatgttt tccgtttaaa cttttctcat ggaacacatg agtatcataa
     2401 aaaaaactta gataccataa gaagagtagc taaagaattg catactcgta ttggaatttt
     2461 acaagacatt agtggtccta aaattcgtac aggtgaactt aaagaaccat ttgaattaaa
     2521 aaagggtgat agacttgatt tttatcgtga aacaatttta ggggagaaga ttgctcaaaa
     2581 tcattataaa atcagtatta atcaaaaatc tattttagat atgttaaaaa ttgatgaata
     2641 tatttatcta tatgatggat caattcgtgc taaagtagaa aacatagatg atcaaaaaat
     2701 tgaaaccatt atagaaaatg atggtttttt aaactcaaat aaaggtatta attttccgaa
     2761 tactaaaatc aatattgatg ttattacaca aaaagataaa aatgatttac tttggggtat
     2821 aaaaaatgaa gtagattttt tagcaatatc tttcgtacaa aatgcgcacg atattgatga
     2881 agttcgtgaa attttagcac aaaataacgc aaaaatatct atttttgcaa aaattgaaaa
     2941 atttgatgca gtagaaaata ttgatgagat tattaaatct agcgatggta taatggttgc
     3001 aagaggagac ttaggtattg aggtacctta ttataaagtt cctaatatcc aaaaagaaat
     3061 catacaaaaa gcaaacaatg cctctaagcc tgttattact gcgactcaga tgcttttttc
     3121 attagccaaa agcaaaaccg ccacaagagc tgaaatttca gatattgcaa atgctgtttt
     3181 agatggaaca gatgcagtaa tgctaagtga agaaagtgcc gttggtatag atcctgcaaa
     3241 cgctgttgat ataatgtgcc aaactataat agaaacagaa aaacgctatc catataacaa
     3301 atttaatgat tttaatgatt tagacaatac agataaaatc atgcgttctt cagctcatct
     3361 tgcaacagat cttaacgctg atgctatttt ttctttaaca agtagcggaa aatctgctat
     3421 taagattgcg agatatcgtc caaatataga aatcatagca gtagggcatt ctgaaaaaac
     3481 cttaaactct ttaagtatag tttggggagt taatcctgcg atcttggtta acaaaagtaa
     3541 tgaacttaca gaattattaa aagactctgt aagatcaagt gttgaaaaag gttttatgga
     3601 tgaagataaa tgctatcttc taactgcagg ctttccaaca ggagtagaag gtactagcaa
     3661 tcttatccgc attctcaata aagagcaaat tgcttattat ctacaataaa acattaaatt
     3721 cctttgaaaa taaggaattt aatgtcctta taaatttttt aagtcaaaag tcgatataaa
     3781 ttaaagcctc acacaaagga gcaaatatgc aagtgaatac tttttcaaat atcgctagca
     3841 tggcacaaac acaagttagc aataagaagg cagatgatgc taaggaaaac acaaaagaca
     3901 aaaatgttca aagtgctaat tctagcaagg atgtagataa aaataccctt gaaaaattaa
     3961 atgcacttgg tggaaaaggc attacacaaa tttacctagt tcagtttcaa cagcaaacaa
     4021 tgaatgctgt aataggttcg agcaatgccc aaactggact agatagtctt ttaaatggtg
     4081 ccaatttaga tactgcgaaa tctatactta caaatattga ttttgcatcc ttaggctaca
     4141 gtggcaaaaa tccacttgat atgaatacag atgaacttca acaacttgta agtgaagatg
     4201 gtttttttgg agtggaaaat acagccaatc gcatcgcgga ttttgttatt aaaggcggtg
     4261 gcgatgatgt tgaaaaatta aaaaaaggtc ttgaaggtat gaaaaaagga tttgagcaag
     4321 cagaaaaaat gtggggtgga gaacttcctc aaatcagtca agatacaata gatgcggcac
     4381 ttaaaaaagt tagcgatcgc atcgatgaac taggcggaaa aactctagat cttcaagctt
     4441 aactaaaaat gcttagaaat ttctaagcat ttttagttgt tattaatatc aaaagtaaaa
     4501 aattcactct taaaattatt aggtaaagtt ttatactgag atatcgcagc ttcatagttc
     4561 tttacttctt gatacaacat accaagagct gctttactct ctttgttatt tttatctgta
     4621 agtttagaaa gctgcaaaag cgctatagct gaatttggat tatttgcacc tacggctgct
     4681 acggctgcta aaaataaagt tttagtatct ttagctccat aatcatcaat caaagaatta
     4741 taaagcgcat aagcctcctc gtattgctgt gcaaaaatat ccaaataagc taaagtttgt
     4801 aaaataccct catcttttgc tcctgaaaca ttaatcaact ctttaaattt ctgtctttct
     4861 aaatttaaaa gccctgcaat atgcattaaa ttaacataaa attccctagc tatatttggc
     4921 ccaccaaaaa cactacgata atcaagtttt aaatttttaa aatgaatttg agcattttga
     4981 gcatattctt taatatttaa atttgaattt aaagaattaa aatacaaaat atttgccaaa
     5041 atatcttcag gcaactctga acgcaattta gcaattttca catctacttg attattaagg
     5101 ttattatttt tagcaacaat agcttcaaaa atcaaactca aaggcgtatc tttttttgtt
     5161 tcatctaaat aaggaagcat agaaatataa ttattattaa ctaaaaataa catacttttt
     5221 tgcatattag ctttaaaatt agaatcagca gctatattat caagaatttc attgtaaagt
     5281 ttagttgtat caatatcaat taattttgca caaaacatag caaaagcacc tgctaagtaa
     5341 tttttaggat taagatgata tgaacttgaa aaatgcttat aagcaagttc ataattttgc
     5401 atttgggcat aagttaaagc caaattataa tgtaaaatac tatgttctgg ataatccttg
     5461 ataagttttt gaaattcttg gttagcaagg cgtaacttct gatttaatgc atagttaata
     5521 atattggcaa tttttacatt ggtagatgaa agagccttgc ttatattaag ataaattccc
     5581 acatcagtac tatcatcaac gaaatctgta acattagctt ttttaatata taaagcagcc
     5641 tgcttactat caaaaacctg ataaggtgca aaataaaaaa gcaaatcgaa ttgatctttt
     5701 tgttttttta gcaaatcttt tgaaaaagaa ttttgagcaa ctgctatatt aaaaagatcc
     5761 ttatttaaac gaacttgaat tttataagta tctaaaatct tatatctatc tttatcgtta
     5821 tcataagaat tttgcaagcg cgctaacata tcttgataat ttcctgtttt aatatcaacc
     5881 aatgttaaag ccgccaaact ctgattaaaa tctctttcaa ttttcatcgc tgtacttaaa
     5941 gcgactttag ctttagcata ttctcctatt ctagcgtata aaagacctaa agataaacta
     6001 gattcaaaat tgccttgaga atttaattgc tgtatagcct tggaatcaaa gtccattttt
     6061 gcataaattt tagcagacaa atactttgca acatcagaat acggctccac atctgttctt
     6121 tgtaacattt gtaaggcctc agggtaatat cctttgtaat aattaatcaa gcttaaataa
     6181 taatcatata attttgattt tccttctttt ggaagataca cttgagctaa atcaatataa
     6241 tatctaaatt tttccttatc attaagcttt aaagcacaaa cagcagcatt gatagcagct
     6301 acactttgat tttctccatt ggctatagct ttcttgaagc tttcaaaagc ttcttggaat
     6361 ttattctcat tcatttgaga aacgcctaaa ttataattag ataaagattc gttatatacg
     6421 gcaacttgct cataaacttt taaagcctgt tcaacctcac cctttaaata taaagcattt
     6481 gctttttgga tcataccatc aattctttgc atatcattgt atttatatga ttcatcaggc
     6541 ataacaacag gttgttctaa aggcttagaa gctataatat ctggtttaat ttttccttca
     6601 ctaaaagtta aataaaaaag tgtaaaaact aaaatacaaa taatccccaa agataaaccc
     6661 acaagagaca taaacttacg atctttatac caaggcgtag gctcttgact ttcaacttct
     6721 tcaaaagttg atacatcttc aggcgcactt tctcttgtaa atttaaaacc actatcacta
     6781 ttttcttgag gtaattcttc tggcaatgat gcaaattctt catcttctgg agcttgcccc
     6841 tcttgcccct taaatccctc taaactctca tcaagtcttg gttgatttaa gccatcttcg
     6901 ggtttttcta gtattatatc ttcttgttca gccatctata ctctttaaaa atattttttc
     6961 aaaacatcag gaatatgaat ttttccttct ttatcttgat aattttccat aatcgctacc
     7021 aaggttcttc ctactgccaa agatgagcca ttaagagtgt ggacgagttc attttttcct
     7081 tgttcgtttt tatagcgaat tttagcgcgt cttgcttgaa aatcacgaca atttgaaacc
     7141 gagctgatct cacgatattt attttgtcct ggaagccaca cttcaagatc tacagttttt
     7201 gctgcactaa aacccaaatc tccagtgcaa agcatcaaat gtctatgcgc taaacctaaa
     7261 gaactcagca aatcacttgc acactcaagc atttcattaa acacactatc actttgctca
     7321 ggtttagtga tacttacaag ctctactttt tcaaactggt gttgtcttat aatacccctt
     7381 gtatcacgcc ctgcactgcc tgcttctttt ctaaaacaag cactataaca agtcattttt
     7441 atcggtaaag tttcactcgc taaaatttct ccgctgtaaa gattggttac tggaatttca
     7501 gaagttgaga tcaaatacaa atcctcatca tctaccttat acatatcttc tttaaatttt
     7561 ggcaactgac ccgtcccaaa catagtagca ccatttacca aaaaaggtac attaacaaat
     7621 tcaaatccac gacttctatt aaaatctatc atataattta ccaaagcacg gcttaataaa
     7681 gctccttcat ttttaagcac acaaaaacga ctttgtgaaa tttttacccc acgcataaaa
     7741 tcaagccaat ttaaactctc gcctaattca aaatgttctt ttggagtaaa atcaaagcta
     7801 ggtggattta aaactttttt aagctccaca ttttcatttt catcttcacc cacaggcaca
     7861 cattcatcag ggatatttgg gatggcatga gcgatttcct caagctcatt ttctaaagca
     7921 tttactttag cgctttgctc attaattttg cttttatttt cgcttaattt tgcttttaaa
     7981 ctttctttat cttcggctgt agcaagctct ttactgaatt tattttgaaa agcttgaaat
     8041 tcttccaagg ctattttttc tttttttaaa cttgcaaaaa gttcagcaag tttttttaag
     8101 atattttcat caactttttt attttttaac tttttagcca cttcatcaaa attattttgc
     8161 aaatttttta aatctagcat tttctactcc ttaaagtccg attttttcat aaattttttg
     8221 cattttttct tgggcgattt ttcttgcttt tgtcgcacca aaatccaaaa tttctttcaa
     8281 atgcgaaggc ttttctaaaa gctcattata tttttctctt gcttctttaa aataagcatt
     8341 tacaagctcg tttaaatata ttttaaaatg tccataaccc tcaccacctt tttcatagcg
     8401 tatttgtaat tctttttgcc ctgattcatc taaaaaaagc tttgcgattt taaaaatatt
     8461 gcagttttca tgatcttttg gatcttctaa agcggtacta tctgtaacta tggaagaaat
     8521 ttgttttttt aaggtttttt cactgctaaa aatatctata gtattttgat aagatttact
     8581 catttttgct ccatcagtac ccacaaccac agctacttct tcattaactc tcgcttctgg
     8641 aagggtaaaa atttcacccc attcattatt aatttttaaa gcaatatcgc gtgcgatttc
     8701 aacatgctgg atttgatctt ttcctacagg gacaattcgt gtatcaaaaa gtaaaatatc
     8761 tgccgccatt aaaacaggat aagaaaaaag cccatgtgaa gcactaagtc ccttagcaac
     8821 tttatccttg taactatgtg cacgctctaa taaacccata ggagtaaatt gcgataaaat
     8881 ccaataaagc tccataactt ccttaacatc actttgcaac caaaaaacgc ttttttgagg
     8941 atctatacca aggcttaaaa aagccgcagc agcttttaag gaattttgtt taagtttttc
     9001 tccatcttga gaagaagtca tggcatgata attagcaata aacataaaca tttggctttt
     9061 ttcttgtgca tctaccattt gcttaatcgc accaaaataa ttacctatat gcaaatcgcc
     9121 acttggctga aggcctgtta atactctcat tttatcacct ttttaatctc gcttaaaagc
     9181 tcatctatat ttttattttc tatatttaaa ataaaatttg ccttttgttc atacttgctt
     9241 aaacgctcat tatataattt ttttgcttta atttcatcat aaaataaagg tcttttagaa
     9301 atttcatctt tgtctaaacg cttttttaaa tattcaaaat ctgcttttaa ataaatacaa
     9361 aaacctgctt tttctaaatt tgaaacatta acaaaacccc cacctgtagc aatacaagtt
     9421 ttctcacaag aactgaaaaa atcagccatt ttttgctctt gttctctaaa aaaattttcc
     9481 cctttttgtt caaaaatttc actgactttt tgattaaatt tttgttctat taaaaaatca
     9541 ctatctaaaa aaacaagatc taaatcctta gctaaagctc ttgctaaagt gctttttcca
     9601 gaacccataa atcctataaa aacgatattt ttagctttca tcattttctt tactgccctt
     9661 tttacgcgaa gcaatcacta aaggcacacc ttcaaaatta aattcttttc tgatttgatt
     9721 ttgtaaataa cgcttatagc taaaatgcaa ggccttagga cgattcataa taagtgcaat
     9781 ttttggcggt gctaagtcat attgtactgc ataataaatt ttaaccaatt tcccataatc
     9841 atgcggcaaa ggatgtgctc ttgtggcatt ttctatcaag atattaagct tagaagtttg
     9901 gattttttga gtgaaatttt caaaaatttg caaaatttta tcgagtaaaa catgcaccct
     9961 ttttccactt aaagctgata cgctaatcac gggtgcgtaa gctagaaatt taaaacgatc
    10021 aagacgcaat tcttttacag tcttatcaaa atccatctca cttttatccc atttatttaa
    10081 aacaataatc acacccaaat aatgcttagc cacaagccca gcaatgcgtt catcaagctc
    10141 gttaaagccc tcatgcgcat ctaaaaccaa aagtgctatt tgagaatgag ataaaatttt
    10201 ttccgtgcga tttagggcaa agcgttcgag tccttgaatt ttaccccttt ttctaatacc
    10261 tgcagtatca acaaattcta tcactttatc tttatgaact acactttcat taacaggatc
    10321 tatagtagtt cctgcaatag aacttacaac actgcgttct tgtttaacca aagcatttaa
    10381 aagacttgat tttccaacat ttacacgccc tacaataccc actctgatat gattttgatc
    10441 gacttcttta aattgaaatt cttttccttc ttcataatac tctaaaaaat cttctaaatt
    10501 ttcttcttca tcggggatta aaaactcttc atgtaaaaat ttttcaagcc attcataaag
    10561 ttcatctaag cctacattat gggttactga aagattaaag atttccttta taccaaaatt
    10621 tgcaaactcc caagcccttt cttcatcttt tttattatct actttattaa tcactaaggc
    10681 tataggtttt ccaagttttt ttaaagaata aaaaaattgt ctatcctcat catcaggcgc
    10741 taatttccca tcaactaaat aaagtatgat atcgctttct ttggctactt ttaaagtgtt
    10801 ttttttcaca tttttaaaaa gttcatcact ttcatcaagc cctccactat caataagcat
    10861 ggcttttttt gaatgaatat gaatttgcgt tttatttgta tctctagttg tacctgaaat
    10921 atcacttgta atagctattc tttgtcttgc cattctatta aaaaggcttg atttaccaac
    10981 atttggcttg cctataagta tgatgctttg catttttttc ctagaaaatt atatttttaa
    11041 aattatataa aatttggctt aatattaagc aaaaaaagac tagaattaac ccagatttta
    11101 gtcaaggaaa aaaatgctaa aagtaatcaa gcataattta ggaatttatt tcatgatttt
    11161 agcatgtttg gattttgcac ttatgggagc ttgtgcaaaa attcttagca aggaaatgag
    11221 ttctatagaa attatgtttt ttagaaatat cataggaatt tttttcatag tctatctttt
    11281 aaaacgatct aaggcgcata aagaaggggg acatttttgg ctcttggtat ttcgtggagt
    11341 agtaggcacg ctttcactat atatgttttt ctataatgtt tcaaatatta cactaggtgg
    11401 agcttttgct tttcaaaaaa ctgctcctat ttttattact ttaatagctt ttgttgtttt
    11461 taaagaaaat attggtatca aaggctggat aggaatttta atagcatttg gtggagtact
    11521 tttaatcgct cagccttggg ctcataattt aaatcattca ggctttgatt taaaaaattc
    11581 agttataggt atcacgagtg gatttttagc cgctttagct cttacaagtg taagagaact
    11641 tagaaaatct tacactacag aacaaattgc cttttctttt atccttttag gaaccttaat
    11701 gcctttaatt tctatgatca gtgctgaatt ttttgaacca cagcatcttg attctttaca
    11761 tttagatttc attctagcgc cttttgtgat gccaagtctt gcagcttggc ttatcattgc
    11821 cattatggga actttaggca ccatttatca aattcatgtc actaaagctt atggtatcgc
    11881 taaacaagca ggagtggttg ccggagttag ttatcttgat gtagtattta gtatgatagt
    11941 tgggataatt ttgggagata atttaccaag tactatggtt tttttaggta taataggcat
    12001 tatttttggt ggattaattt tagttaagaa caaaggaaaa aaatgaaaaa aatgatactc
    12061 attgctggtc cttgcgtgat agaaagcaaa gatttgattt ttaaagttgc tgaacagtta
    12121 aaaaatttta atgaaaatcc aaatatagaa ttttatttca aatcaagttt tgataaggcc
    12181 aatcgcacaa gtattaattc ttttcgaggt cctggtcttg aagaaggatt aaaaatttta
    12241 caaagcgtaa aagatgaatt tggtatgaaa atcttaaccg atatacacga aagcaatcaa
    12301 gcaaaccctg taagtgaagt agctgatgtc ttgcaaattc ctgctttttt atgtcgtcaa
    12361 accgatttac ttgtagctgc agcaaaaact aaggcaaaag ttaatatcaa aaaaggacaa
    12421 tttttaaacc caagcgatat caaatacagc gttaaaaaag ttctacaaac ccgtggtata
    12481 gaagatgaag gctatgaagc tgctcaaaaa aatggtgttt ttgtagctga aagaggagct
    12541 agctttggct atggaaattt agtagtagat atgcgttctt tagttatcat gcgtgaattt
    12601 gctccagtta tgtttgatgc tacccatagc gtacaaatgc caggggctgc aggtggaagt
    12661 agcggaggga aaagcgaatt tgtagaacct ttagcaagag cggcagcagc cgtaggcata
    12721 gatggctttt tctttgaaac acatattaat ccttgcgagg ctttatgcga tggacccaat
    12781 atgcttaatc ttacacgcct taaaaattgc gttaatacat tactagaaat acaaaatatc
    12841 ataaaggaaa acaaatgaat attattgaag gaaaattaaa tttagactca aatacaaaaa
    12901 ttgctatcat taatgcaaga tttaatcata tcatcacaga tcgccttgta gaaggagcaa
    12961 aagatgcttt tttaagacac ggaggcaaag aggaaaatct aagccttata cttgttcctg
    13021 gtgcttttga acttccgtat gcgttaaaaa aagctataga aagcaaaaaa tttgatgcaa
    13081 tttgttgcgt aggtgcagta attcgtggct caactccgca ttttgactat gtttcagcag
    13141 aaaccaccaa aggcatagcc aatgtgagtt taaatcataa tatccctgta agctttggtg
    13201 ttttaactac agatacaata gaacaagcca tagaaagagc tggaagcaaa gcaggcaata
    13261 aaggctttga agctatgaca actgtaatcg agatgttaaa tttaagcaag gagctttaat
    13321 ggcaacgcgt catcaagttc gccaaagcgt catctccttg ctttatgctt ttgagttaaa
    13381 ttctcaaaac aacgtttttg tagatgaaat tttagatgaa aaaaaaatac gcaatgaaca
    13441 aaaaaatttt actttaaatt tatataatgg aattttagat aatttaaaca atattgatga
    13501 aaccttaaat tcatttctaa atgataatca aattacagct ttaggacatg tagaaagagc
    13561 tatactaaga cttggagctt atgagttact ttttaccgat actcctagcg ccattgtcat
    13621 caatgaggct atagaacttg ctaaagaact tgctaatgac aattctccaa aatttataaa
    13681 tggagtttta gatgccttaa taaaggctaa aaaatgaagc tttgtgtcgc acttgatctt
    13741 tctacaaaag aagaatgctt acaacttgcc aaagaattaa aaaatttaga catatggtta
    13801 aaagtaggtt taagagcata tttaagagat ggttttaaat tcatagaaga acttaaaaaa
    13861 gttgatgatt ttaaaatatt tcttgatctt aaaattcatg atattcccaa cactatggca
    13921 gatgcttgcg aagaagtatc aaaacttggt gttgatatga tcaatatcca cgcaagtgct
    13981 ggaaaaatag ccatacaaga agttatgaca cggcttagca aattttcaaa aagaccttta
    14041 gttttagcag tttctgctct tacgagtttt gatgaagaaa atttctttag tatttataga
    14101 caaaaaattg aagaagctgt aattaatttt tcaaaaatat cctatgaaaa tggacttgat
    14161 ggtatggtat gctctgtttt tgaaagcaaa aaaattaaag agcacacaag ttcaaatttc
    14221 ttaaccctta ctcctggaat tcgtcctttt ggagaaacaa gtgatgatca aaaacgtgtt
    14281 gctaatcttg caatggctag agaaaatttg agtgattata tcgttgtggg aaggcctata
    14341 tataaaaatg aaaatcctag ggctgtatgt gaaaaaattt taaacaaaat acacagaaaa
    14401 aatataagcg aaaacgatat agagcaaaat tatgaagtaa ttcagcaaaa agaatgggat
    14461 atgtgtaatc actttgaaga atggattaaa actcagcctg ataaagaaca tgctttaaaa
    14521 gaattttatg ctaagtgtgg gataaaatat tgaattatca acaattagaa tgcgattact
    14581 ttaatcttta caatcagttt cttagcgtgg attttcaaat ttcattattt gaaaaagatc
    14641 ataaaggttt aattaaagat tttatatttt tttattatca aattttaaag caaaaagact
    14701 tgagctactt gcttgaggta agaaataaaa tttccctgaa agtttataat tatatgcaag
    14761 agcactccac ttctccaaaa gatttaagtc ttatttgtct aagagaaaat ataaacatat
    14821 taaatttttt caaatatttt acaaggctct cgcttatttt gtagccttta gaaaaaaact
    14881 tgatggagaa caaaaaatta aaaatttgat ttcaaatatc aatgactgtt ttggctatca
    14941 tttcttgaat tctgacttta acaatcttca aaattttcaa aaaagcgatt tgttcacctt
    15001 acctgaaaaa catcttaaat attttcactt cgccatgatt catctttgtt tcatggtttt
    15061 aaatccttta aattttaaag actctaatcg gcatcttga
//
LOCUS       DARGED010000028        14944 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.028, whole genome shotgun sequence.
ACCESSION   DARGED010000028 DARGED010000000
VERSION     DARGED010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14944
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.028"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1047)
                     /locus_tag="SFZ84_000706"
     CDS             complement(<1..1047)
                     /locus_tag="SFZ84_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8202848.1"
                     /translation="MPLLSVIIPFGLSKERPYIEERVLQKAKFFQSDENIEFIFVEGY
                     SSKDHELKNFIQANHHIYLKDMDQKAFSQGRCRNLGASYAHSNVLLFLDVDCYISLDN
                     FEKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYDDKFWDILIQEDLFTAKNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYIYHFYHIEPNQNAYMQNKDKNHQLFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGEIIYKNISDFFIAKE
                     LKYELLLDFLQQEKI"
     gene            complement(1047..1994)
                     /locus_tag="SFZ84_000707"
     CDS             complement(1047..1994)
                     /locus_tag="SFZ84_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG8202849.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLATNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKREIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSINPKVVDA
                     DAMASEAEGIMLKHKIKEIIVGKEEKVVGIIQLYAIGNV"
     gene            complement(2005..3663)
                     /locus_tag="SFZ84_000708"
     CDS             complement(2005..3663)
                     /locus_tag="SFZ84_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG8202850.1"
                     /translation="MKKILILFFSCILCFGAVDVSQIISAEDQGSATTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGNVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKRGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(3665..4783)
                     /locus_tag="SFZ84_000709"
     CDS             complement(3665..4783)
                     /locus_tag="SFZ84_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG8202851.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTASEDLNYLKGYIESSDMLKILDEKIKLKNL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLKVEVEGFTPKSAHLIAQA
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(4783..5445)
                     /locus_tag="SFZ84_000710"
     CDS             complement(4783..5445)
                     /locus_tag="SFZ84_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202852.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KV"
     gene            complement(5442..6224)
                     /gene="kpsM"
                     /locus_tag="SFZ84_000711"
     CDS             complement(5442..6224)
                     /gene="kpsM"
                     /locus_tag="SFZ84_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HEG8202853.1"
                     /translation="MLNVIYALFFRELKTRFGKNRYLGYIWVVGEPMSIVLLVTIIGT
                     IVREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFIIILFFAGWFFRLDVFPVHLLGVLFCIFLLIYSAFALGICFA
                     IIWHFVEPLRTLLAYFSIVFYWTSGIIFPTWLTPRPLLDIFYYNPLLHIFELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAVKKE"
     gene            complement(6296..6703)
                     /locus_tag="SFZ84_000712"
     CDS             complement(6296..6703)
                     /locus_tag="SFZ84_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202854.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFLFAK
                     FDKSAKIYALELFWLKFTNNALGLSKKLEFYKK"
     gene            6778..7341
                     /gene="ciaI"
                     /locus_tag="SFZ84_000713"
     CDS             6778..7341
                     /gene="ciaI"
                     /locus_tag="SFZ84_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG8202855.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMFKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            7378..8067
                     /gene="dut"
                     /locus_tag="SFZ84_000714"
     CDS             7378..8067
                     /gene="dut"
                     /locus_tag="SFZ84_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG8202856.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            8069..8782
                     /locus_tag="SFZ84_000715"
     CDS             8069..8782
                     /locus_tag="SFZ84_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG8202857.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(8765..9730)
                     /gene="tilS"
                     /locus_tag="SFZ84_000716"
     CDS             complement(8765..9730)
                     /gene="tilS"
                     /locus_tag="SFZ84_000716"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG8202858.1"
                     /translation="MQIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRQNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(9720..11039)
                     /gene="rimO"
                     /locus_tag="SFZ84_000717"
     CDS             complement(9720..11039)
                     /gene="rimO"
                     /locus_tag="SFZ84_000717"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG8202859.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVIIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVSFKVINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            11113..12210
                     /gene="prfB"
                     /locus_tag="SFZ84_000718"
     CDS             11113..12210
                     /gene="prfB"
                     /locus_tag="SFZ84_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG8202860.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(12368..12573)
                     /locus_tag="SFZ84_000719"
                     /pseudo
     CDS             complement(12368..12573)
                     /locus_tag="SFZ84_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927569.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(12803..13921)
                     /gene="truD"
                     /locus_tag="SFZ84_000720"
     CDS             complement(12803..13921)
                     /gene="truD"
                     /locus_tag="SFZ84_000720"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG8202861.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDVSAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(13890..14711)
                     /locus_tag="SFZ84_000721"
     CDS             complement(13890..14711)
                     /locus_tag="SFZ84_000721"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG8202862.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKYGVKLNIFGKAVKGKYEFRGREHHF"
     gene            14798..>14944
                     /locus_tag="SFZ84_000722"
     CDS             14798..>14944
                     /locus_tag="SFZ84_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202863.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQD
                     DDIYF"
BASE COUNT         5192 a         2625 c         1890 g         5237 t
ORIGIN      
        1 gattttttct tgttgtaaaa aatccaacaa aagttcatat tttaactctt tagctataaa
       61 aaaatcactt atatttttat agataatttc tcccacataa acactaatat ccttaaaatc
      121 ataattttga tctttaaaaa gcattaaaac tttttcacct ttggctttaa aaacttgcaa
      181 aggctttaaa tcgtgttttt tgatgttttt taaatgctta taaaaaagct gatggttctt
      241 atctttattt tgcatataag cgttttgatt gggttctata tgataaaaat gatatatata
      301 aattccataa aaacaagcct cataaccaag caatgaaaac caagatctaa aacctttaaa
      361 gttaaaaaaa ttccaatttc tagcatcata acttaaatta gtaggcattt tttcaaaact
      421 cacacaagct tttaaaattc tagcaaaaag atcaaaatct tcataaccat gtccgataaa
      481 attttcatca tttccgccca atcttaaaaa ctgatgttta tttatcacaa tacttgaagt
      541 agaacttggg gcaaaaaatt ttacccaagt attttttgct gtaaataaat cctcttgtat
      601 caaaatatcc caaaatttat catcgtattg ctttaatttt tcattagctt ctttattaag
      661 atacactacg ggtaaaacta tcaaagcatt gatattttga gaaatatttt taatttgaat
      721 tagttttaaa attttttcaa aattatccaa agaaatataa caatccacat ccaaaaacaa
      781 aagaacattt gaatgcgcat aacttgctcc taaattccta catcttcctt gagaaaaagc
      841 tttttgatcc atatctttaa gataaatatg atggtttgct tggataaaat ttttaagctc
      901 gtgatcttta gatgaatatc cttcaacgaa aataaattct atattctcat cgctttgaaa
      961 aaatttagct ttttgaagaa ctctttcttc tatataagga cgttctttac ttaatccaaa
     1021 aggaataata acagataaaa gaggcattaa acatttccta tggcataaag ctggataata
     1081 cctacaactt tttcttcttt tcctactata atttctttga ttttatgttt taacatgatc
     1141 ccttctgctt cacttgccat agcatcagca tcgactactt taggatttat actcatgatt
     1201 tctttggcct taaaatcaaa ccttggttta tcgcttgctt ttaaagcacg acgcaaatcc
     1261 ccgtcagtga taatacccac taatttttca ttttcaagca ccacacaaag tcctagtttt
     1321 ccactagtca tcacatcaac aagatcgtta aattcggtat caggatgcac tataggaagg
     1381 ttacttgaaa ccataagatc ttttaccttg gttaaaagct tacgtcccaa acttccccct
     1441 ggatgaaaaa gggcaaaatc atcaggcttg aaatttctta ccttcatcaa agcagccgct
     1501 aaagcatccc ccataactaa agttgctgtt gtcgaagaca taggagcaag ctgcaaagga
     1561 caagcttcct tttccacggc tatatttaaa aatatatcgc cttgctttac aagggtagaa
     1621 ttttttttac cacacattac tataagtgga atttcacgct tttttatagc aggaatgatt
     1681 tttaaaattt cttcagtttc tcctgaattt gaaatagcaa ttaaaacatc ttcggaagtt
     1741 aacattccaa gatctccatg caaagcctct cctggatgga taaaaaagct tggtgttcct
     1801 gtgcttgcta aagtagctgc tatcttagcg cctatatgac ctgatttacc cataccacta
     1861 actatgcaac gccctttggt atttaacatc aaatttacag cttgattaaa attttcatct
     1921 aaatttgtag ccaaatccaa aatagcttgc gcttcttttt caaaaacttc tttggctatt
     1981 tcaagagtat tcattattta aaccttaaag attaagcaca acattggttg cgatagcaat
     2041 ttgataaaga atttgagtca acattgaaaa aatttgtaaa ttctcactat ccacttttgg
     2101 caataccaac acagaatcgc ctcgtttcat atctatacca ctatgatatt tttcagcttt
     2161 tccattgctt cgtatcacca aaacttttga agtatccgct ctttctccat aacctcctgc
     2221 aagattgata taatatctta aatctttgcc cttatcatac acaaaagctc caggtaaaga
     2281 aacctcacct tgaactatga tgagattatt cttacttggt acattaatag tatcaccatc
     2341 ttctaaaata accgaattat aagactttgg attatcaatg acaatttgac ccttaggctc
     2401 tacttgctta gctctttgga taaattctaa aatcgttttt gcttgttgag ctcttatagc
     2461 tgcaccttga gctgtaacag aaccactagt taaagctaga gtttcaagct ctttaagctg
     2521 agcattgata agttcttttt gagttctagc tacacttttt ctaaacactt gtaaagcttg
     2581 catgtttgat tgtggattag ctttaattaa tttagaaata tcttctaaag tcgttccttt
     2641 acccacaact aaagttttta aaccattatg ctcgccattt acacttatag ttatattttc
     2701 agaaacatac tcagggtgaa attctacctc atctcccgtt ctaagtaaaa cttttgaaaa
     2761 ttgcatttta ttataagcac tgacatcaag tttatgatct tcaccataac tttttacgat
     2821 agcattagtt acgataggtt tagcacctga tactctagct aagtcagcta aagttttaat
     2881 atcatttgaa agttcaaaac gaaaaggtct ttgcacatca ccgttaacaa aagcgtaatt
     2941 ttgaacattt cctactaaaa taacatctcc acttctaaaa ggaaaaagat ccatttgccc
     3001 ctttagtaaa aaatcatata aatcaatatt ttttatcacg ctgttattac gcaaaatttg
     3061 aatatctcta aaacttccat attctaaatt tataccccct gctttatcaa gatactggat
     3121 cactgaatcc gaactaagtc cttgataaag tcctggagca ttaacgtttc ctgttacaaa
     3181 aacactgaca ttttgataag cattcatatc tgcataaaca aaaacattgc ttttatagat
     3241 tttattaaca cgtgctttta taacacttac aagggcgcta tttttcacac ctagtaaatt
     3301 tacagctcct actttaggga taaaaatatt tccttgagaa tccaccacta aaacttgcga
     3361 aaactcaaca gctccccaaa ttttaagact gatttgatca ccaactgcaa tcttataatc
     3421 tgggttataa actctttgat tgtaattttt aaaatttcca ttaaaaagat gagcgccaaa
     3481 tactaaaatt tgatgaattt ttgtaagatt attttcttta tttgctatat cataatttga
     3541 gcttaaattt tgatctatgc tagttgtagc agaaccttga tcctctgctg aaatgatttg
     3601 tgaaacatcc acagctccaa aacataaaat acaactaaaa aataaaatta atattttttt
     3661 cattttaata cttatgctcc tctattatca ttttaataaa tttaacaatc ccaaaaatca
     3721 aagataatac aataaatgct gttaaaatat cataaattct ttcaggatat tttgcgcttt
     3781 ctggaatatc tggactttgg atgatgacaa gttgttttat ttttcttaat gcttctattc
     3841 tagcactttc ataagctttt aaagctgctt cataagcttt ttgcgcaaaa gtagcttcta
     3901 tagttaaatc ctgaaattta gcagccaaat cgttaagctt ttgagaagaa ttgttagctg
     3961 aaattttaga tttttccctt aaaagctgtt ttttaatcgc ttcaatttct gctttaagtg
     4021 ctactacttc aggtgctgca tcattcatat agctttgtaa agttaaaagt ttagcttctt
     4081 tttgagctaa attagcctca atttgcgcaa ctaaacttgc tttagtttca gcttgtttta
     4141 aaggatcaaa aactccatat ttattttgaa aagcaatcaa atcattttgt gctttttgat
     4201 aacgttcttt gtatttttgc acttcatttt cagcaaaagc catttgctct ctagctgctt
     4261 tatgagagat ttcgttgata aatttttcgc tttcttgcat aatagcttga gcaatcaaat
     4321 gagctgattt aggtgtaaaa ccctctactt caacttttaa aagtttagtg gtttcatccg
     4381 tatgaacctt aactcttgct tggtagtatt taagataaga ttctatcgag cttgaatccc
     4441 aaattttaaa aggtaaatct atatgttgct cttgataaag atttttaagt ttgatttttt
     4501 catccaaaat ctttaacata tcacttgatt ctatataacc ttttagataa tttaaatctt
     4561 cgcttgctgt agaagtacta ctaagcaaag acaagattcc acttgtttga gcactttctc
     4621 cacttgttga tctaacatct aaaatcatcg tgcttacata tcttggtgct gcaatcaatg
     4681 tataataaat cacaacaaaa atcattataa accaaacaat tttaaaagaa tcaaatatac
     4741 ttaaatcttt gattttttct aataaagttt tattttcttc cattaaactt ttccttgata
     4801 tacagctatt ccttcatcta catcatcata aaccgtaatt tgtccatttt tcatataaat
     4861 tattttatca caccattctt taatttcagc tacattatga gataccataa tcacttttga
     4921 tttgcttaat ctttctctat ataatttcac acttttttcc ctaaaagcag gatctccaac
     4981 agctcctgct tcatcaatca aataataatc aaaatcaaag gccatactaa gtccaaaagc
     5041 tatcctagca ctcattcccg aagaataagt cttcataggc tcatcaaaaa atttcccaag
     5101 ttctgcaaaa tcttccacaa attttacttt ttcttggagt tcttttcctt tataaccata
     5161 tactctagct acaaatttag cattatctct agctgttaaa gaaccttgaa aagccccatt
     5221 taaacccaat ggccaagata attttttatt agtaattatc ttaccactat caggaagttc
     5281 tgccccgctt aaaagacgca taagagtaga tttacccgct ccattatacc ccatcaaacc
     5341 tatgctacaa ttttcaggaa actcaaaagt aaaattctta aaaacataat gtcttccacc
     5401 actaaataaa ggataagatt ttgttagatt aattaacttt atcattcttt ttttaccgcc
     5461 gttaaagctt gtctattata gtaatagata aaaagcccta taaataaaac aagtaaaatc
     5521 caaaatatag cataaaaata actatattca tcttgcaaag gataattttc aaaaaaatta
     5581 aatcttaaaa gttcaaaaat atgaagcaaa ggattataat aaaatatatc aagcaaagga
     5641 cgaggagtta gccaagtagg aaatataatt cccgaagtcc aataaaacac tatgctaaaa
     5701 taagctagca aagttcttaa aggttccaca aaatgccaaa taatagcaaa acaaattccc
     5761 aaagcaaaag ctgaatatat aagcaaaaaa atacaaaaca aaactccaag caaatgaaca
     5821 ggaaatacat caagtctaaa aaaccatccc gcaaaaaaaa gtatgataat aaaaattaca
     5881 aaataaatac aaaactcaag taaagttcta gcaataaata catgtatagg ctttacaggt
     5941 ttataggcaa aaagagctaa atttgcctga gttccattca taagctgggt aactatactt
     6001 ctaaacataa aaaaaggcat aatgcctgaa atcaaaaaca taaaaataga aattccctca
     6061 ggcataactt gatgatgata ttctctaaca atagtgccta tgatagttac taaaagtaca
     6121 atactcatag gctccccaac tacccatata tatcctaaat accgattttt accaaatcta
     6181 gtttttaact ctctaaaaaa taaagcataa attacattta acatttattt ttatacctaa
     6241 caattttaca taaactataa tcataactca tttttttaaa caaaatcata aaaatttatt
     6301 ttttataaaa ttcaagcttt ttactaagtc ctaaagcatt gttagtaaat ttaagccaaa
     6361 aaagctctaa agcataaatt tttgcacttt tatcaaattt agcaaagaga aacttagaaa
     6421 aataaatttt catttgctcc ttgcttgcca ttttaaactc ggccttagct tgcacacctt
     6481 ttaaaaaagc tattttactt tctttggcta tattaagtgc tatacttgaa ttttcactgg
     6541 ctaatcttat atgcttagta tcttcatgcg aagcgataat aaaagctaaa ttcttctcat
     6601 caaaagcata aaaagcacta gctgtataaa cacctttttc atcaatcata gcccaagata
     6661 aaagctgctc attttttata aattctaaaa ttctttcatc catattgtaa aaattatact
     6721 aaaatatttt taaaaataac cgatttttaa tttaaactat aaatataagg ggaagaaatg
     6781 caaattgatg ctagcaaaaa ccaaagtttt tcgatggatt atacaacaaa aagtggcaaa
     6841 catttagcct tatctatgta tgacaatcaa agcgtgagtt atgcaaataa tgaagaaggt
     6901 aaaactctta atcttaagcg tcagtatggc tttagcttta cttttgaagg ctctaagctc
     6961 acacaaaatg atcttgatga gattaaaaat gctatgaaag aagttgaacc tatgttcaaa
     7021 gactttttag caaattctaa agtcggagag ttaaagccaa aagaaattat agaatcagct
     7081 atgcaaatgg caaatgttct accaacacca aatgatgaaa accatcaaaa tgctattatg
     7141 aataatttta caaataaact cagtgattta ctaaaacaaa atcaaacaga tgataaagat
     7201 atcaatgctt ccatgcttga agatagcaaa aaacttcttg atgaagtttt agaacaaatg
     7261 aaaaaacaac ttgaaaaaca gcaagaaaaa gccaaggaaa atcaagataa gacagatgat
     7321 agtttaaatc tttacgctta aatcatataa tattaaaaat tatcaaggag tttttaaatg
     7381 acaaatatcg aaattttaga aaatatgctc aaactccaac aaaaactcaa cgatgaaaca
     7441 aacggcttaa attgggaaaa tggctacacc aaagaaggaa aactgatcag ttggagacgc
     7501 tgtatttata tggaatgtgc agaacttata gactcttttg catggaaaca ttggaaaaac
     7561 atttcaaatc cgacaaattg ggaaaatgtg cgtatagaga ttgtcgatat ttggcatttt
     7621 attttaagtc ttttacttga agagtatcgc gataaaaaca ataaagattt caaagctata
     7681 gccacagaag ttaatgctgt aagcgtgttt caagattttt gcaaagaaga agaataccct
     7741 aatgagggtg atatttatgg cattttaaat gatatagagc ttattatcca taaatgcagt
     7801 ggttttggat ttaatcttgg agaattactt tcaacctatt ttactctagc tattaaatgt
     7861 gggctaaatc ttgaaattct ttataagacc tacataggta aaaatgtttt aaatattttt
     7921 agacaaaaca atggttacaa agatggtagc tataaaaaaa cttggaatgg caaagaagac
     7981 aatgaagttt tagctcaaat tttagaacaa gagcttgatt ttgatactat ttataaaaaa
     8041 ctagaagaat gctacaaaaa ggcataattt ggatatttta aaacttgcaa tcaaagattt
     8101 tttaagtctt aaatttttaa aatttgcctt aattcctttg atttttagcc ttatactgat
     8161 gcttttttta ggagtacttg gcttttcggc cttgcttgat tattttaatt ctttatttag
     8221 cgttggagaa gattcgtttt gggcgtggtt ttatgctctt cattttgtac aaattttaat
     8281 caccatcata agttttttat tttcaggttt tattgttgtt tttgcttcgg tttttttagc
     8341 cctttttatc acttcttttc ttactccttt tatcgctaaa gaaatcaacc aaaaatatta
     8401 ccattatgat aatacaaacg aagtttcaac cttaaaaact atctttgaaa tttttaaaat
     8461 atttataaaa tttataggga ttttattgct ttgcaccttg gctttatttt taccttttat
     8521 aaatattttt gtatattatc ttgcttttta ttatctcttt cacaaacttt taatgattga
     8581 tgttacaagc acgattttag acaaagaaag ttttaaaaat tttcattctg atttttcgcc
     8641 tttagagttt aaatttagca ctctttgttt ttatctactc tcatcagtac cacttttagg
     8701 actttttttg caagtatttt ttgtgatttt tctcacacat ttaagctatc aaagaatttt
     8761 aaaactaaaa gctaaggctt gaaatatcga ttttgtgatt gtataaataa gctcttaaaa
     8821 gtcttggaat tttagctatt ctacactctt ctttgaaatt tttaggtaat ttttgacaag
     8881 tttcatactc aaaaacaata gcttgttcgt ttttatatgc aagtgctatt ttaccgccta
     8941 aaacacaatc gccctttaaa agctcttttc tttgtgccgt gcttaaaagc aaacctttca
     9001 ttttcaccgc tctagcgatc aagctttcat ttttagggca aataagaagt ccttgaattt
     9061 ctttgatatt ttcaaaatca taaagttttt tcctatcttc atcaagataa gaaaaacttc
     9121 tttttaaacc ctgatgaaat ttactcacaa aggcattaga gaaatttttt cttatataat
     9181 ttctaaaata tttttcattt tcattacttt catcatggaa ataaaaaata tctttttctt
     9241 ttaaaaaaga tgaaatttca tctttactta taaagagtaa agggcgtaaa agtgtataat
     9301 tttggcgttt ttcacactct tgcataccta aaatttcagc caaacctgct cctcgtgaaa
     9361 gttgcatcaa aaaccattca aattgatcgt ttaaatgatg ggctaagata agatgatcat
     9421 aatcttgctc aagacaaatt ttttcaaaaa aatcatagcg aaaatctctg gctttttttt
     9481 caaaattact ttgaaattta ggagcgtgtt ttatgaaaat ttttttatga aattttaaag
     9541 caagttcttt ggcttttaac tcttctaaat cactattttt tcttgttttg taatttatca
     9601 tcacaagatc aaagtcgatc ttttcttgca ttaaaagata aaaaagtgca ctagaatcac
     9661 ttccataaga aaaagcgagt aaatttttac ccttttttaa aagggctaaa atttcatctt
     9721 taatttgcat ctacttttct taaagcctta gcaaggagct ttttatcaag gttttgtaaa
     9781 atttcacatt cataaatttg ccccatttct aaatttccac attcgctttc attgataaga
     9841 atttccccat caatctctct atcccatctt aaatctttag ctgcgatgaa aaactctccc
     9901 tcactacttt ctcctgtgca aactactaaa cgcttttgcc ctacttcttt ttcaaaactt
     9961 ttttctatca cttcattaac aattttttct atgattttaa gccttttatt gatcacttta
    10021 aaagacactt gctccatatc aaaagcggct gtatcttctt ccttagaata cgcaaaaaca
    10081 ctcactctat caaaaccaaa gtctttaaca aactcacaaa gctcttcaaa atctgcctca
    10141 ctttcacctg gatgccctac gataaagccc gtgcgtaaaa agctatttgg cgcacttttc
    10201 attaaattta gcatttcttt aagtcttgtg ctatttgccc cacgcttcat gattttaagc
    10261 atattatcac ttatgtgctg taaaggcata tcaaaataat ttacaaaaat ttcagaagct
    10321 ataatgcgtt tgatcaaagc ttcactcgca ctcgtaggat aaagatataa aattctagcc
    10381 gctcttatgc ctttgatttt ttccacctca tcgattaagc gtataagccc atctttttca
    10441 cccttatcaa acaaataaga actcgtatct tgtgcaataa aagaaaagtc cttataacct
    10501 ctagctacca aatctttaag ctcagctata atgctactta tctcgcgaga ttttaacttg
    10561 cctttaaaac ttgggatggc acaaaaagag catttttgat tacaaccttc ggcgattttt
    10621 ataaaagcat gggaatttga acctgtgata atacgtttgg aattttcact ctgcaaataa
    10681 gtcgaatttg aaaataaatt tgttttttta agtatcattt catcgattct ttcataatca
    10741 cccacacctg tgaaaagatc aacctcagga agttctttca taagttcttc gcggtaacgc
    10801 tgcatcaaac aacccgtaac caccaaaaga gaatcttttt ttctttgttc gtgcaaatcc
    10861 aaaatcgcat taatactttc tttttttgca ctatcgataa aaccacaagt atttacgatt
    10921 ataacatcag ctttgcttgg ttcatcgcaa agttcataag cactaaggcg ccctagcatg
    10981 atctcactat cgactaaatt tttattacaa cctaaagaca taagataaag ttttgacatt
    11041 tttttcctat attaaagttt tcttttgata taatttttga ctttaaaaat ataattatag
    11101 caaagaaatt ttatggataa ttacgaattt agcgaacttt taaaaacttt aaaaaacaaa
    11161 gtcggcaaca tagcctccat catcaagcct gaaaatatcc aaacaaggct taaagaaatc
    11221 gaagagcttg aaaattctcc ttctttttgg agtgatgtta aacaagcagg aatcataggt
    11281 aaagaaaaaa ctaaaatcac caatctactt aaaaactatg aaaatgcttt taatgctcta
    11341 aatgacgcaa gcgaactttt cgatctggcc aatagcgaaa acgatacaga aacacttgaa
    11401 gctttattta atgacgcacc aaaacttgaa gataccatca caagtcttga aatttccatg
    11461 cttttaagcg gggaaaatga tggtaaaaat gccattgttt ccattcaccc aggtgcaggt
    11521 ggaacggaaa gtaatgactg ggcaagcata ctttatagaa tgtatttaag attttgtgaa
    11581 agagaaggtt ttaaagtcga aactttagac tttcaagaag gcgaagaagc aggacttaaa
    11641 gatgtgagct ttttagttaa aggagaaaat gcttatggtt atttaaaagc tgaaaatggt
    11701 atccatcgtt tggtaagaac ttctcctttt gatagtgcag gacgccgtca tacaagcttt
    11761 tcaagtgtta tggtaagccc tgaacttgat gatgatatag aaattgaaat cgaagaaaaa
    11821 gacataagaa tagattatta cagagcaagc ggtgcaggcg gacaacatgt caataaaaca
    11881 gaatcagctg tgagaatcac acattttcca accggcatag tcgtacaatg ccaaaatgac
    11941 agaagtcagc acaaaaacaa agccaccgct tttaaaatgc taaaatctcg cctttatgaa
    12001 cttgaactca tgaaacaaca agatagtgct aatactggag aaaaaagcga gataggttgg
    12061 gggcatcaaa tccgttctta tgtgcttttc ccttatcagc aagtcaaaga caatcgcagc
    12121 ggagaagctt tttctcaagt ggataatatc cttgatgggg atatcaaaaa aatgatagaa
    12181 ggcgttttaa ttgccttaaa agcggagtaa cagcttaaaa ataagtaatt tctgcaaaat
    12241 gtcggtataa aaagaattag aaagatagcg ggattttccc gcttgtttta ttatcttgca
    12301 taaaacctaa gagcatcatt cacagaacaa taaactcttt tcttaaaatc tttatcgcaa
    12361 taaacactca caactttata gtctttttat cgtttggatt taataagaaa acatagtttg
    12421 agtatggagt ttatctattt ctaaatcacg cttcatttct ttaattttgc cttctggatt
    12481 gttaatatca ctaattgttc tgactgaagt ataatcataa agtttatgat ttggatattt
    12541 tttcataatc tcttgattac ctaaatcaaa catagcttga tcgttgccat tgttttttta
    12601 ctcgactaaa tcgccatcgc cacaacctat aatcaaagtc atagctccta aagccaaagc
    12661 acttgttaaa atctttttca ttatttttgc tcctagtttt aaaattaaat taatataact
    12721 atacctaaat ttaaaattta aatatcattt ttgcaataaa ttctaaagta aaaatcacgt
    12781 aaaaatttaa ctcataatta tttcactcaa acaaattttt atgcaaaatt tcttctaaaa
    12841 ctacagtagc ataagagcct ttttgcaaga aaaactctat acaaaaatga gctttttctt
    12901 catcataacg ccattttaac tcttctaaat atccccacat aaagcgtctt gaaccttgca
    12961 ttttagcctt aaactccaaa gtatctttaa aaatttcatt ttctaaattt aaggccaaac
    13021 cttctcctgt ttcataagcc ttagcaccga ttaaaagccc catggcgctt acatctcttg
    13081 ccttaaaacg cccaagctca gcacttaaat cctcgcataa aaaacacttt ccaaaaggat
    13141 aatgccctaa aacctcacct tttaaaagct taaaaaattg ttcttgtttt ttaagttcct
    13201 tagcttcttc tttagaaatt ttataaattt ggatcaattc tttttcgcta aaatcatttg
    13261 caaaatgtga taactccact cttttactca aatagcgatt aaaaagctca ctttgaaaag
    13321 ctgaaattaa aaactctttc atttttacat ttttcatttt tttgccacgc aaaatttcaa
    13381 gcccttcttt ataattatcc ccaaattttc caaaacgctg ataaccaaaa taattcgtaa
    13441 aaccttgctt atccaaattc atcaaagctt gttctagttt taaagcatcg cttggtaaaa
    13501 ctttttttaa gcgtatgaaa aaagtatttc cttttaaatg ccctattctt agcttgtttt
    13561 catggataaa aatttctaaa attttaagtt taggatgaga aaaatttgac aaaaaactct
    13621 caaatttttt aggcatagaa aggtattgaa aggttgatcc ttgcttatct ttaagccctg
    13681 cataaccaaa atctcttatt ttaaccccgc ttgtttcact taaaattttt aaagcttcat
    13741 ttgtggttaa atctttttta ttgatatgca aaataagatg ttcaccctta ccgctaaatt
    13801 catacaaagg cctttcacgc actacaaaat catcgctatt tttactaaaa tacgcattaa
    13861 taggactgtg ttttaaacta tacaaaggct taaaaatggt gttctcttcc tctaaattca
    13921 tattttcctt tcactgcttt tccaaagata tttaatttca cgccgtattt tttggctatt
    13981 gtttttatat tttgacgctc tttttcatca aaagcaaaca aaatttcata ttcttctccg
    14041 ctataaagcg tataatcatc aagtttttta aaccaagaaa taccgcattt atttaaggct
    14101 agaagtcttg ataaatcctt gcttaaacca tctgaaatat ccatagcaca agaaattaaa
    14161 ggtgcgattt cataaaaaaa actagctctt aattttggct ttataaatac atggtttggt
    14221 tttaaagtgc ccccattttg taaaatttca agccctttta aacttcgtcc taattttccc
    14281 gtataagcaa gtaaatgccc cttttttaaa ccttttctaa aaacagcttt atcgttaatc
    14341 tttgaaatga tagtaagact aatgtctatt ttatcattgc ttatagtatc accgcctatg
    14401 atttttatat taaatttcct agctgttttt aaaaaacctt tttgcaaggc tttgatctca
    14461 ttttcgctta aattttttgg taaagcaagt cctaaaagtg cgtattttgg tacagcattc
    14521 attgaaatag catctgagat attaacaagc attgcttttg tagcaatttg ctctaagcta
    14581 aaccactctc ttttaaaatg cacattttca aaaaacaaat ccttactaaa acaccaatca
    14641 tcaataatag ctccatcatc gccatttttt tcatttaaaa aagctttgat aataaaatct
    14701 tctttgttca taatgcgtga ttttataaaa tttcctttta aattctagtg aattttagaa
    14761 taattttata taatataaaa atatttaagg aaaaaccatg aaaaaattag aattaagaat
    14821 ttttagattt gataaaacca aggattatga ggcttattat aaaccttata tttatgataa
    14881 ttatgaaaat tttgcaagtt tttatgattt gcttttgcaa gttcaagatg atgatattta
    14941 tttt
//
LOCUS       DARGED010000029        14545 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.029, whole genome shotgun sequence.
ACCESSION   DARGED010000029 DARGED010000000
VERSION     DARGED010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14545
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.029"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..352
                     /locus_tag="SFZ84_000723"
     CDS             <1..352
                     /locus_tag="SFZ84_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase S8"
                     /protein_id="HEG8202864.1"
                     /translation="SPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEK
                     RIYGRTLENKASFVDFPITFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHN
                     AYELHLMSSVGKRF"
     gene            408..1799
                     /gene="fumC"
                     /locus_tag="SFZ84_000724"
     CDS             408..1799
                     /gene="fumC"
                     /locus_tag="SFZ84_000724"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG8202865.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDSIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPYIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(1829..2872)
                     /locus_tag="SFZ84_000725"
     CDS             complement(1829..2872)
                     /locus_tag="SFZ84_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG8202866.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(2876..3883)
                     /gene="ruvB"
                     /locus_tag="SFZ84_000726"
     CDS             complement(2876..3883)
                     /gene="ruvB"
                     /locus_tag="SFZ84_000726"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG8202867.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            3974..4384
                     /locus_tag="SFZ84_000727"
     CDS             3974..4384
                     /locus_tag="SFZ84_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG8202868.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            4385..4743
                     /gene="ssrA"
                     /locus_tag="SFZ84_000728"
     tmRNA           4385..4743
                     /gene="ssrA"
                     /locus_tag="SFZ84_000728"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            4950..7227
                     /locus_tag="SFZ84_000729"
                     /pseudo
     CDS             4950..7227
                     /locus_tag="SFZ84_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(7370..9454)
                     /locus_tag="SFZ84_000730"
     CDS             complement(7370..9454)
                     /locus_tag="SFZ84_000730"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG8202869.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            9642..10157
                     /gene="nrfH"
                     /locus_tag="SFZ84_000731"
     CDS             9642..10157
                     /gene="nrfH"
                     /locus_tag="SFZ84_000731"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG8202870.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            10172..12004
                     /locus_tag="SFZ84_000732"
     CDS             10172..12004
                     /locus_tag="SFZ84_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG8202871.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            12140..12694
                     /locus_tag="SFZ84_000733"
     CDS             12140..12694
                     /locus_tag="SFZ84_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202872.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEFLKTNGLKVPSNTDIIKSKDKGITIGGTHYSANITQK
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            12758..12847
                     /locus_tag="SFZ84_000734"
     tRNA            12758..12847
                     /locus_tag="SFZ84_000734"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12792..12794,aa:Ser,seq:gct)
     gene            complement(12920..13912)
                     /gene="ceuB"
                     /locus_tag="SFZ84_000735"
     CDS             complement(12920..13912)
                     /gene="ceuB"
                     /locus_tag="SFZ84_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEG8202873.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAIDALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVIVGNK
                     ERAQGILDNVLVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(13925..>14545)
                     /locus_tag="SFZ84_000736"
     CDS             complement(13925..>14545)
                     /locus_tag="SFZ84_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8202874.1"
                     /translation="LASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLR
                     LKVEELVAFGRFPHSQGRLNTNDKIKINEALEYMELNNLRNEFLDTLSGGQKQRVFIA
                     MIIAQDTEFIMFDEPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDE
                     IIALKDGKLLKQGSKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
BASE COUNT         4954 a         2129 c         2501 g         4961 t
ORIGIN      
        1 aagtcctttt gctaaaaatt atgaaagttt aaaacatcat agcataaatg caaatttagg
       61 ttttaatctt gctaaaaata tagagcaaga tgattatcaa gcttcttttt ctacttttgt
      121 aatttttgaa aaaagaattt atggaagaac tttagaaaat aaggctagtt ttgttgattt
      181 tcctattact tttattcaaa aatataaatt aaaagataat attttaagtc aaggttttaa
      241 ttcagaattt ttatataaaa acaatgtatt ttggcagttt atgttaatga atagattttc
      301 tcataatgcc tatgaattgc atttaatgag ttcagtagga aaacgttttt gaaagtattt
      361 atttttttag cttataataa ataaaatttt aatcaaagga aaaaattatg gaatacagag
      421 ttgaacatga taccatgggt gaagttaagg tcccaaatga caaatattgg ggagctcaaa
      481 ctgaaagaag ttttgaaaat ttcaaaatcg gttgcgagaa aatgccaaag gttttaatct
      541 atgcttttgc aaatcttaaa aaatctttag ctttggtcaa taacaaactt ggcaaacttg
      601 atgatgctaa gaaaaatgct atagttcaag cttgcgatga gattatcgca ggtaaatttg
      661 atgataattt tccacttgcg atttggcaaa caggttcagg cacacaaagc aatatgaata
      721 tgaatgaagt tattgcaaat cgtgccactg aaatcatggg cggggatttt cgcaaagaaa
      781 agcttgtaca tccaaatgat catgttaata tgagtcaaag ttcaaatgat acttttccaa
      841 cagctatgag tatcgttgcg gttgagcaag tagagaaaaa gcttatccct gcgcttgatg
      901 agcttattgc aacttttgaa aaaaaagtaa aagaatttga tagtattatc aagataggac
      961 gcacgcattt acaagatgct actccactta ctctagcaca agaatttagt ggatatcttt
     1021 ctatgctttt gcattcaaaa gagcaaatca tcgcttcttt accaacttta agagaacttg
     1081 ccataggagg aaccgcagta ggaacagggc ttaatgcgca tccagaatta agccaaaaag
     1141 taagtgaaga gctaactcaa cttataggta cgaaatttgt ttcaagtcca aataaatttc
     1201 atgctttaac aagtcatgat gcgatcaatt ttactcatgg agctatgaag ggtttggctg
     1261 caaatttaat gaaaattgca aatgatataa gatggttagc ttcaggccca agatgcggtc
     1321 ttggtgagct tatcatccct gaaaatgagc caggaagttc gattatgcca ggtaaggtaa
     1381 atcctaccca gtgtgaagct gttactatgg ttgctgtaca agtgatggga aatgatgcag
     1441 ctatcggatt tgcagcaagt caaggaaatt ttgaacttaa tgtgtttaag cctgtgatta
     1501 tttataattt cttgcaaagt cttgatttgt tagctgattc tatgcattca ttcaatatcc
     1561 attgtgctgt aggcatagaa ccaaatcgtg caaaaatcga tcataatctt cataattctt
     1621 taatgctagt taccgctcta aacccataca taggttatga aaacgctgct aaagtagcca
     1681 aaaatgccca taaaaaaggt atttctttaa aagaaagcgc aatggagctt ggtttggtta
     1741 gcgaagaaga tttcaataaa tttgttgatc ctactaaaat gataggccca aaagcctaga
     1801 acataaaact tgcctttttt aaggcaagtt aaattaaatt cttatctttt aaaatcacat
     1861 acattcttaa agttgataca aaaaaagtta aaatcgcagg acctagtata ataccccaaa
     1921 aaccaaaggt tgaaattcct gctatcatgg ccaagaaaat taaaagttcg ttgattttag
     1981 tgggagtttt tacaagtttt ttgttgatcc atttgatgat taaaggtttg attaaagtat
     2041 ctgctataaa agaaattaca attacagaat aaataaaaat aacaagagct gagttaagat
     2101 tgtttgaggc aaattcataa agacttacag gcacataaat taaagctcct cctatagcag
     2161 gtatgagaga acttacagca aaaattactc ccattaaaat tccatcataa ccataaaata
     2221 ttgtgattaa accaaaaagt gcaccttgaa atattgctac aattaccata gagtaaagca
     2281 caacagccat aacattaccc acttcgctta aaacatcatc gagttctttt ttatcaatag
     2341 gaatgatgga tttaagatag ataacaagtt ctgttccata tagatttgca aagaaataaa
     2401 acacacaaat taaaaccata tctataagaa atttagctcc tgattttgta aaacttgaag
     2461 cataacttag aatttgttta gaaatactat ttaaatctat agaagctaaa aattctttaa
     2521 ttttaggttc taaaaaatta aagctttcag gcaaggtgaa ttgatagttt ttgacataat
     2581 caagtgtttg tgtaactaaa ttaatatcaa aattctttaa agctttggca agttctatca
     2641 tagcataaac aaaaggtgca aagaaaagca aaaccataca agctgttgta agaatggaag
     2701 ctaaaaattt atgtccttta gtaagattta aaaattttgc attgatgttt gaggtagcta
     2761 ccgccattaa actagctatg ataattacaa gtaaaaaacc tttaaaaagg taaagtaaaa
     2821 gaaataaaat aactaaaata aagcttataa gaaagaattt tccattttgc aaaatttact
     2881 cctcaaataa agttttttca tagtttagtt ttaaagcact ataacttttt gcacttgcta
     2941 tacgcccttt tgcagtgcgt tctatatagc cattagctag taaataaggc tcgattacat
     3001 cttctatggt attttcatct tcacttaaag ccgcagcaat acttgcaagt ccgataggtt
     3061 tttgtttggc agcggttaaa agttcaagat atcttaaatc catcgcatca aaaccaagct
     3121 cattaactcc taaagaattt aaggcctcat tagctctttt ttctgtgata atctcttcat
     3181 cattaacatc ggcaaaatct ctaactcttt ttaaaagcct tagagctatt ctaggagttg
     3241 aacgacttct tttagcgatc tcaagtgcgg ctttttcttc gcaagtttta ttaagtttta
     3301 aagctgcttt ttgcaagatt agggcaagtt cgctatcttt gtaaaattct aatctaaatt
     3361 gcataccaaa acgatcacgt aaaggattgc taagcatacc tgcacgcgtt gtagccccta
     3421 taagagtaaa ttttggtaaa tcgattttta tggtttgagc agctggacca ctacctatga
     3481 taatatcaag gcggtaatcc tccattgcag ggtaaagcac ttcttcgata gcaggactta
     3541 agcgatgaat ttcatcgata aaaagtatat ctccttcgct aagattggtt aaaatagcgg
     3601 ctaaatctcc gcttttttct atcataggag cggcggttgt tttgatattt gcacccattt
     3661 cataggagat gatattagct agtgttgttt ttccaagtcc tgcaggacca ctaaaaagta
     3721 tatgatctaa acattcattg cgttttttgg ctgcagctat aaagatattt aaattttttt
     3781 taatgctttc ttgacctata taaccatcaa aatttgaagg acgcaacgaa gtttcgtaag
     3841 tttcatcaaa ggagtatttt tctatttcta ctattctatc catatctttg cttatatttt
     3901 ggaaaaatta aaataagatt ttagctaaaa tttgctagaa tttatattaa actttaatga
     3961 ttatggttta aaaatgggaa ttttaacaaa attagaatta gattatgaaa ttgacgatat
     4021 agaaaaattt ttacaatttt ttagaaccat gtgcgatagg tttgaacctt taatcatcaa
     4081 gcttggaagc gatagcgtgc gttataaaga agccataaaa gagcttgaaa ctttagcaca
     4141 caataccgct tgggcagcaa gacgcttaaa tcttgaagaa gtgactgatt tttgtgtatt
     4201 ttgtgaagag atgatggcgc aagcaaatcg ctttaatggg cctgctagtg atgaatttac
     4261 ggattggatg cttttgatga gtgatcagtt tgaaaaatat tgtcgttcat atgaaaatga
     4321 tgattctgtt ttagcggttt ttaatccttt aattgttaat gttccaaata ttatttctaa
     4381 ataagggagc gacttggctt cgacaggagt aagtctgctt agatggcatg tcgctttggg
     4441 caaagcgtaa aaagcccaaa taaaattaaa cgcaaacaac gttaaattcg ctcctgctta
     4501 cgctaaagct gcgtaagttc agttgagcct gaaatttaag tcatactatc tagcttaatt
     4561 ttcggtcatc tttgatagtg tagccttgcg tttgacaagc gttgaggtga aataaagtct
     4621 tagccttgct tttgagtttt ggaagatgag cgaagtaggg tgaagtagtc atctttgcta
     4681 agcatgtaga ggtctttgtg ggattatttt tggacagggg ttcgattccc ctcgcttcca
     4741 ccatcacgct aattttaagt aaatcataag tttatttcaa atttttagaa ttttttatat
     4801 gaagttaaga tcgatttatt acccttaaaa ctttgatata ttaggtttta taatttttca
     4861 ttaaaaattt atagttttat ttttaagctt atttttaggg ggggggggta taattttcct
     4921 tcagtttaaa tttattgaag gagaaactta tgaagaaaaa tgcttcgagc aagatattgc
     4981 taagcttagg tgtagcaact ttgctttatt caggtgcttt tgcgcaagaa atcaatctta
     5041 cagagtcttc agatatagga aattattttg aagaaaatgg taaggatatc aatctcaaaa
     5101 atcctgataa ttacaaaggg caagatttaa gtatcaaaat gagtgtttgg gatttaccaa
     5161 acgatgatta tgatagcgct gattatcgat ttaacattgg tatcggcaaa aacaatactt
     5221 taagctttaa acacaataat agcgaacatc ctgcttatgt aacaaatcta aacgctactg
     5281 ctaaagaggt taaaacaaca gatatagttt tacaagcttt tgcaccttcg gtgattaatg
     5341 gagatttaac tatgactagt tcattagatg aagccattac cgaggatgaa aaaaggctcg
     5401 ggtataattc tttataatgg aacagttgaa ggaaaaagtg ctaatggtag tttaactata
     5461 aatggaaatt ttactgccga taaaactctt tttgctactt atggaaattt tgttaaggta
     5521 aatggagctg caaatcttac aaattcaaat tttggactta tgaaacgctc ttatacagac
     5581 ttagaagcaa ataatgtagt aatagttcaa gctaaagatt ttaacaaaga tatcttagaa
     5641 gaaaaatcaa ataataacgc gggtgcatta cttttaaaat tcgcaagtga ttatatctca
     5701 acagatgttc aaggcaaaga tcctttggaa gcaggaacta taatagatat tagcgatgaa
     5761 gataaatacg gcgatggaga aaaaggctta gtagattata aacttagcgt tcaaaactgc
     5821 ggtggcaata aatgcttagt gatcaatgga ggtgctactg cagcggctaa agataagcta
     5881 gttcaacttc aagtagatat agatactatc gataaattgc ttgaaaatga atttgattcc
     5941 gatcaagatg aagaatgggc aaaagccaaa gaagctcttg aaaaacaaaa aactgaactt
     6001 caaacaatgt tagaagaagc tgagaaaaac ggcggtaaaa tcgatgatga aaaatacatt
     6061 gatttagtaa ataaaaattc aaattgaaat cttaactcta atgataaagc ttctatccta
     6121 gcacttcgtt ctatcacaga acaattagga agtataggag cagatttagc aagtagagaa
     6181 ggtgtaaaac tagctttaga tatcaaaaaa gatacagaca atacaggtaa atctgtatct
     6241 aatctaaatt cagcttctag tgcagtaaat accactatga atatttctaa tgatgtttct
     6301 ataggttctc gtgtagcaat gctaaacaat ccttttggaa cttatgcttc taaaatgaat
     6361 ggccttaaat ttgctgcttt agatagcgat atgagaccaa gctatgtaaa tgaatatacc
     6421 aatagtgttt gggctaatgc ttttggtggt gctaacatta tcgatggaga tagtggtgca
     6481 atgtatggtg ctactatagg tgtagataaa caagctaatg atgatgtttt atggggtgtt
     6541 tattttactt atgcaaatgc taaaatcaaa gacaataatc tagaacaaaa aagtgataac
     6601 ttccaattag gtatgcattc tactatcaat atagctccac aatgggaact taatcttaaa
     6661 gcttatgctc aagtttctcc aactaaacaa gacaatgttc aaatagatgg tgcatataac
     6721 tcagattata caagtaaatt cttaggactt agtgctaatg caggtcgtgt gtttgacttt
     6781 agtgataata ctttatttat taaacctttt gcgggagtaa attattattt tagttatact
     6841 ccatctcata cagaaaatgg tgctattgct aaagatattg attctatgaa aaacaattct
     6901 gtaagtattg aagtgggtgc tgaatttaga aaatatatga atgaaaactc ttatattttt
     6961 gtaactccaa aaatagaaca atttgttatc aatagtagtg atgattacac agctaaccta
     7021 gctgtaaata atgctttctt tactagtatt gaagctaaca acaagaaaaa aacatacgga
     7081 caaattatcg tagggggtaa tgtagatttt acaaatcaac tcagtatgaa tcttggcttt
     7141 ggtgctaaac aaatactagc aggtaaagta gataataaaa atgaaactta cttaagtggt
     7201 caagtaggac ttaagtataa attttaatct taaaaatcat ttctaaatct ttttatagtt
     7261 tagaaataat tgtttatttc tatgggaaat ctcctagggc tttatcttaa agcccttttt
     7321 tataacaaac aagtaaataa gtctttagag taaaaaaccc taaaaacttt tagttttctt
     7381 tgaaaagttt ggaagctaag tgcgttgcac gactttgatc tgtatctttt ttaagtgttt
     7441 tataaatttt acttacatat tcttctaagg tttgttgaga atctatgatt ttttcagaag
     7501 aaggaatttt ttcatattct ccattatttt taagcttata agctaaaaca ttatcactaa
     7561 gttgcaagcg taaaaattga gctaatttag ctttgcttct ttcatcatat ataggagtca
     7621 taagttctaa acggcgttct aaatttcttg gcatccaatc tgcactcgat ataaaataat
     7681 ttggctcact atgtttaaaa taaaatactc tagcatgttc taagtatttt cctatgatgc
     7741 ttctaacgcg tatgtttttg ctgtattctt catcaggttt taagcaacaa attccgcgta
     7801 tgataagatc gatttgcact ccttccatac ttgcttcata aagcgcttgt atgatatcac
     7861 tatccacaag agaattcatt ttagctacaa tcacaccttc atttttcttg cttgtttcaa
     7921 tgcgtatcat ttctaaaact ttttctttga tttgatttgg gctcattgaa agagtttgaa
     7981 ggcgacgatt tttactaaag cccgataaga tgtggaaaaa gcttgtcgta tctcttgcaa
     8041 attctgcttt gcttgtaaaa taactcacat cagtatagat tttagcactg cttgcattat
     8101 aatttcctgt gcttaaatgc atataaaatt taagtttatc tccttgtttg cgtatgactt
     8161 gagaaacctt agcgtggact ttaaaacctg taatgccata aataacatga gctccggcat
     8221 tttctaaagc tttcgcccaa tgaagattat tttcttcatc aaagcgtgct tttaattcta
     8281 ccatcacagt tacttgtttt ccatcacttg cagcatcaat taaagcttga actatattgg
     8341 aatttttttc gactctataa agtgtcattc ttatggaaat tacttcagga tctttgcttg
     8401 cttctttgat aaatttataa actggatcaa aactttcaaa aggttgtatg atgagtatat
     8461 cttctttttc tacagcgtca aaaatagata aattctcatc aaaaggtggt aaagttttag
     8521 gcgtgtaaag tgggcttaaa agatgcgtaa aggttttatt tcctgcgatt tgccaaaggc
     8581 tagggagatt gagtaaaata gaatattcat aaacatcttt atgaaaaatt ttcatgtgag
     8641 tattaagaaa ttctacgatt tgctcatctg catctttttg aatttgcaat cttacaaaag
     8701 ctccttttct gcgaagtttt aagccttgtt ctaaaatcat cataaaatca tcagcttctt
     8761 cctcttctat taccatatct gcatttctag tcactctaaa tgctgctgaa gctaagagtt
     8821 tatagcctgg aaaaatttct tctgcgtgtt gatggactat actttctata ggaacataaa
     8881 tatttgcact tacttcataa aaacgaggta aaactcttgg aattctaatc attccaaatt
     8941 ttacaagttc aggatgcgct ttatcgcaaa ttttaaccgc tagtgaaaaa gataagttgt
     9001 ttaaatgcgg aaaagggtga gtagcatcaa cagctattgg aacaataaca ggaaaaatat
     9061 tggagaaaaa atactcatca catttttgtt ttaaattttc atctaaattc tcataatgtt
     9121 ttatgaaaag attttctttt tctagttcac ttgtgatttc attaaaataa cgctccaaaa
     9181 gttctttttc ttggtgtaag tatttgcgta tggcttttaa ttgttgtaac ggggtcattt
     9241 catcgctact gcttgcatta actccagctg aaaaaagttg ttttaagcct gcgacgcgta
     9301 tcatataaaa ttcatctaaa ttagtgcaat atatagctat aaattttaat ttttctaaca
     9361 agggtaaatt tttagaacat tggtctaaaa cacgagaatt aaagcgaagc caagaaagtt
     9421 cgcgattgat aaacatatca ggacttgttt gcattaattt ttcctttttt agttgtattt
     9481 tatcatttat tttgaaatta ttgaataaaa gttttaaatt ttttaggtta attaagagta
     9541 aatatatctt taaaattata ttaaattcat ctatgttaga atcacaaaat ttatttctgg
     9601 gaaattctgt gacattgttg tttcattgaa gattttaaga aatgataatt ttaaggagga
     9661 aaattttgaa gaaaacttcg aatcttttta ctatttttct tgttttgctt tttgttttct
     9721 ttgcggttgg gttttatact ttttataacg ctaagggcac atcttattta agcaatgcaa
     9781 gtgaatcttg taataactgc catattatga atgaagttta taacgaatac atggcaggac
     9841 cacattctca aaaagtcaaa ggcgaaccaa gagcaacttg tgtggattgt catttgccac
     9901 ataattttgt agctaagtgg atagctaaag cgcaaagtgg tttagggcat gcttatgctt
     9961 ttacttttaa acttgatgag ttgcctacaa atttgagtgc gaccgaaaaa agcagaaaaa
    10021 tggtgcaaga aaactgcata cgctgtcatg cagattttgc tcaaacggct atcaatgcta
    10081 caacaaatcc acatgcagac aagtcattaa attgtgcttc ttgtcataaa gatgttggac
    10141 ataaacacgg aatttaataa ggagaagatg aatgaaaaaa aatattttac gcttaggtat
    10201 tgtcgttttg gttttactta tagcgggagt tttatggcta aataatgata tcaatcaaaa
    10261 aaaagaagat gaagcaaata aaaatgccat tgcagcaaat gctgattttt ctttgcttag
    10321 tgatgatgat ccaaattttg aaaaatgggg taaggttttt ccagagcaac taaaaatgta
    10381 tttaacggtt gaaaaagaag agcctaaggc tactgaattt ggtggtaatt tagcttattc
    10441 aaaattgatt cgctttcccc aattaaccat actttgggca ggatatcctt ttagccttga
    10501 tttcaatgaa gaaagagggc atttttgggt tcaagtagat caaatgaaaa cagcaagaaa
    10561 taacaaagat tttcttaatg cccatggact tgctgctttt aaaggtcaac ccgcagcttg
    10621 tatgaattgt catagtggat ggactccatg gcttataaaa aatgttgcta aaggagattt
    10681 tactgctttt aactctacaa attattggac tatgattaaa aatatcccag ctgttgatgg
    10741 tatagtagaa aattcacctg aacatgcagg cccacatggt ggtaaaagaa tgggtgtaac
    10801 ttgtgcagat tgtcacaatc caaatgatat gagtttaaga cttactcgtc cagcagctat
    10861 taatgcttta gtttctagag gatatgaaaa agatccagtg caaggtgtaa aagctacaag
    10921 agaagaaatg agaactttag tttgctctca atgccatgtt gaatactatt ttaaaccaac
    10981 aggggaaaaa gtaaaagtaa tgggtgaaac tattgtagat gatagttcta aaaaatggtg
    11041 gaatggaact cagaaaaatt atgatgagta tgaattttgg agagatggta ataaagctaa
    11101 agagattgaa accgatggta tagttttaac ttttccttgg agtgagtgga aaaaagggca
    11161 accatttaga attgaaatgt tagatgatta ttatgataaa gttcgtggag tatttggagc
    11221 tgattttact cataaattaa caggggcaca aattattaaa attcaacacc cagaaagtga
    11281 actttatagt ggcggtgtgc atgctgcaaa tggagtaagt tgcgtggatt gtcatatgcc
    11341 ttatgttaga gaaggggcta aaaaggttac tcaacacaat atcacctctc ctttaagaga
    11401 tattaactct gcttgcaagt cttgtcataa acaaagcgaa gattatttaa aagctcaagt
    11461 gcttgacata caaaatagcg ttgcgcatga tcaaagaacg gcagagtatg caattgttag
    11521 tttgattatg gatactaaaa aactacgtga tgaactaggc aatatggaaa aattccaaag
    11581 cgatggaaaa gctgatgcga aaaaaattag cgaagagcta aaagaagttt tagaacttca
    11641 tcgtaaagct caaatgagag cagattttgt taatgctgaa aactcaactg gttttcataa
    11701 tcctcgcgaa gcttcaagaa tgttattgca agctgttgat atggcaagaa tgggacaaac
    11761 taaacttgta gaaattgcag cggcaaatgg aattaaagat tttaaaactt caaatttagg
    11821 ttttgaagat attcaaaaat ttaatccagg agagctttat tataaagtag atgttaataa
    11881 tcataaagct ggagagcgtt actatgcaga tgaaaaagat gttaatggca atcctccaaa
    11941 agaactttta gagcatgata aagagcttgc tccttataat tatcaagtga ttgataaaaa
    12001 ataattctta agccctataa tcatagggct ttttcttttc tttgttttaa aaaatataaa
    12061 ctttttattt aaaattcact tttgcttcac tttgttttgt caaaatatca caaattttga
    12121 taatcaaaaa ggagttaaaa tgatcaataa aaataaattg tttagacagg ttcatatcta
    12181 tcttagtttg ttctttttgc cttgtgcttt gctttttgct ttaacgggta tagcgtatat
    12241 ttttggtatt aatcaagatg tgggcttaaa agttgagcag tatcaattgt caaaagttat
    12301 agaaagtggt aaagaaagag aagctttaat agagttttta aaaacaaatg gtttaaaagt
    12361 accatctaat acagatatca ttaaaagtaa agataaaggt ataacaatag gtggaactca
    12421 ttatagtgct aatataactc aaaaatctac taatgaatac aatattacct taaaaacaag
    12481 atctttactt ggcgatatga ttatgcttca taaagataag ggtgcttggt atttttctgt
    12541 gcttagtgta ggctttggta ttactttatt tatgctttat atttcagggc ttatgattac
    12601 tttgtttgca aataaaaaag atagaagtaa gcaatttgca gttcttggag taggggttgt
    12661 tgtaactttg cttttggctt atcttagcct ttgatttttc ctagcttttt aagctaggta
    12721 ttatttattt ttttgtataa ttacacttta ctttattgga cagatgggtg agtggctgaa
    12781 accacacccc tgctaagggt gcagatctta acgggtctcg agggttcaaa tccctctctg
    12841 tccgccacta aaaatttctt gaaaatccca agtattttat taagtatcga agcaagagac
    12901 tagcccttgc gaagttatat tattttacag cgtttttgat ttctaaaatc atagttttta
    12961 aagactctag tccatttcca cttgctaaat accagtattc tggatcaaga tagatgattt
    13021 ttttgttttg tgctgctttg gttttagcga caagcacatt atcgagtatg ccttgagcgc
    13081 gttctttgtt gcctacgatg acatttctat caacaacaaa aatataatca ggattttttt
    13141 ctaatataaa ttcagagttg atactttttc cgtgtgtgcc tacttttata ttctcatcta
    13201 ctgcattaat ccctaaaaca tcgtgaataa tcccaaagcg agattgagga ccaaaggctg
    13261 aaattttgtt agaatttgta agaatgataa gagctttttt atcttcatca actatacttt
    13321 tggctttttc aatttcattt ttaatatctg aaattttttc taaagcttct ttttctaaac
    13381 cataaagttt tgcaacgctt aagacattgt tttcaaaaga gcttaaaaaa tttgcattat
    13441 caagacctac aaataaagtt ggagctattt cttttaactt atcataaaat ttactttggc
    13501 gtccagaaat gatgataaga tcaggtttta aagcatcaat ggcttcaaaa tcaacttgtt
    13561 gtactccacc tacactaggt ttgtttttaa attgttgtag gtattttggt aaatttttag
    13621 caggaacgcc aacgacttta tcatttaatt ttaaagcatc aaaagtatct aaaattccaa
    13681 gatctaagat cactacctta gaaggatttt tagggatttt attttctcct agactatcct
    13741 tcactaaaaa actatcaccc tcatcgctca tactaatagg caaaactttc accgtagcag
    13801 tgttggtttt tgttgtagaa cttgcgttgt tttcatttga gtttgaatta caagctgtta
    13861 agattagact taaaaaaaat gcaaaaaatg caaaaactaa agattttttc atattttctc
    13921 ctttttaaaa ataaatacaa attttcttac cattaatttg acttacgggt atatccatat
    13981 cataaatttg ttttaaattt tcttgattga tgatttcatc ttttgagcct tgttttaaaa
    14041 gcttcccatc ttttaaggct atgatttcat cagaataaat cgaagcaaaa ttaatatcat
    14101 gtaatacaac agctatactt ttgttaaagt ctttgactaa atttttcatt agttgcatga
    14161 tttgtacgct atgcttcata tcaagattgt tcaaaggttc atcaaacatt ataaattcag
    14221 tatcctgagc gatgatcatg gctataaaaa ctctttgctt ttgtcccccg cttaatgtat
    14281 ctaaaaattc atttcttaag ttgttaagtt ccatgtattc taaagcttca ttgattttga
    14341 ttttatcgtt tgtattaagt cttccttgag aatgcggaaa acgcccaaaa gcgactaatt
    14401 cttcaacttt taatcttaaa ttgatattgt tttgttgttt gagaatggaa attttttgtg
    14461 ctaagatttg ctctttataa ttttttaaat tcattccatc gatataaatt tctccactac
    14521 taggttttat caaacgactt gctag
//
LOCUS       DARGED010000030        14292 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.030, whole genome shotgun sequence.
ACCESSION   DARGED010000030 DARGED010000000
VERSION     DARGED010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14292
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.030"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..460)
                     /locus_tag="SFZ84_000737"
     CDS             complement(<1..460)
                     /locus_tag="SFZ84_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG8202875.1"
                     /translation="MNKKLLSIIASTTLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGY"
     gene            complement(598..981)
                     /gene="queF"
                     /locus_tag="SFZ84_000738"
     CDS             complement(598..981)
                     /gene="queF"
                     /locus_tag="SFZ84_000738"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG8202876.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            1141..1740
                     /locus_tag="SFZ84_000739"
     CDS             1141..1740
                     /locus_tag="SFZ84_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEG8202877.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELIPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(1745..2626)
                     /gene="metA"
                     /locus_tag="SFZ84_000740"
     CDS             complement(1745..2626)
                     /gene="metA"
                     /locus_tag="SFZ84_000740"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEG8202878.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(2710..3981)
                     /locus_tag="SFZ84_000741"
     CDS             complement(2710..3981)
                     /locus_tag="SFZ84_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEG8202879.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANVEGGAFGIPVASGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKISQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGSALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNFHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(4407..6977)
                     /gene="flgE"
                     /locus_tag="SFZ84_000742"
     CDS             complement(4407..6977)
                     /gene="flgE"
                     /locus_tag="SFZ84_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8202880.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAQSTEVAIKANLNSGLNIGTAKTPIYGLDSVHGYNKKDGTAKNENDTGITQ
                     FYTTSKNSIEVTEKGVDAGSLFNANGTGLNLRDGQGIWVSYADAKFSTAGEGAQANQG
                     NNGVFDPNQKVLQDRVIFWGHEQKPTTLDITLNGVHIQNNSIKSLDEAIAYINTFTAP
                     TDTRDGTGVKAVKKADGSGIDFINDNADGTTDNMKNIDLQVNPQNSAGELVRVRVTNT
                     NPPDFDWQNTQLRPAGNPIVNNAGSAWIAGTAAQNQNRIQIVTAHKYIYSSTPVELDP
                     MYNPDGGPVFNPANQNTAGTAENNYMNAIQGSLLNTTPRTFRTTEDLRELLQRDARYG
                     VDYDGSGGFEITGEDVNEGVKVTVGATGEFIISNPNEIPARPGVTPPGGQDNRKPHNI
                     SFNVTAYTDTQGKISKNDAFTTIFKGFDGVLTVGNSNRQSEQLFLSAFSAGLEIYDSL
                     GSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSL
                     SNYTPKTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLK
                     PDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVG
                     EAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ
                     "
     gene            complement(7170..7652)
                     /gene="ruvC"
                     /locus_tag="SFZ84_000743"
     CDS             complement(7170..7652)
                     /gene="ruvC"
                     /locus_tag="SFZ84_000743"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG8202881.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            7748..9070
                     /gene="dnaA"
                     /locus_tag="SFZ84_000744"
     CDS             7748..9070
                     /gene="dnaA"
                     /locus_tag="SFZ84_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG8202882.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPNDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQS"
     gene            9230..10297
                     /locus_tag="SFZ84_000745"
     CDS             9230..10297
                     /locus_tag="SFZ84_000745"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG8202883.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKTNNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTEVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            10326..12635
                     /gene="gyrB"
                     /locus_tag="SFZ84_000746"
     CDS             10326..12635
                     /gene="gyrB"
                     /locus_tag="SFZ84_000746"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG8202884.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKANNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(12661..13002)
                     /locus_tag="SFZ84_000747"
     CDS             complement(12661..13002)
                     /locus_tag="SFZ84_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG8202885.1"
                     /translation="MKKTILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(13005..14243)
                     /locus_tag="SFZ84_000748"
     CDS             complement(13005..14243)
                     /locus_tag="SFZ84_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG8202886.1"
                     /translation="MKQNNQKEDRRDFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         4961 a         2366 c         2184 g         4781 t
ORIGIN      
        1 aataaccgtc aaaattttgc gacaaagata aaaagcttgt ttttaaggta agatctgttc
       61 ttgcatatcc tccatacaca cctaaaacag ctctggtttt ttcaaaaagc ttaggagtaa
      121 aatcataacc tgttaaaaat ttatgtgtag taaaatcacc ttcgatttga attttaggag
      181 ttttgataaa atcactaaat tcatcagaat aattataacc agcataaatt ctatgatttt
      241 catttagacg atatccaagt tttagaccaa acgatggtat attacctgaa atatctccat
      301 taaaattttg ctttgtattc ttatgtttta actcactttt tacttgagca tgcatccaag
      361 ctgcatcagc acctataaaa aaaccagaat tctcatctgc taaagccaaa tttgaaaaca
      421 aagtagtact tgcgataatg cttaataatt ttttattcat aacctaactc cttataataa
      481 aattcgatct aaaaaattta gatcttttta tattatatat tcttcaaaga ttaaataaga
      541 atttttgata aaatacttaa tctttgcata aaaatatgtt aatattttac tcaaatatta
      601 ttttggcact accatatcgc tacgacattc tatcaccgta tgtacatttc cacgcgggtt
      661 aaaatccccc acaactttaa tccattttgg ttttaattta tcttttaaag tattgtaaat
      721 ttcattgata cttgcttcat gtgaaacatt tctatacata aaagtattga tataaagttt
      781 tatcgcctta agctcaacca caaatttatc aggcatatac tcaagataaa tcgtcgcaaa
      841 gtcaggataa cccgaacgcg gacaacaaca cataaattca ggtaaagtga ttttaatgat
      901 ataatcattt ttagcatcat ttggccaaat ttccatattt tctacatcaa attctttaat
      961 ttctttttca ccataacgca tgagctttcc ttattgaaaa tttttagaaa attatataaa
     1021 aaattacttt tagagcaatt gaaaaataaa catttttagc aaattgcata aaaaagacaa
     1081 atattatatt aaataaagct ttttatacta gaataaggca aatctttcaa aaggaaaaaa
     1141 atgagaaaat caattgcaat tataggcggt agcatcgcag gacttagcgc ggctttattt
     1201 ttcgcttcag ctaaaaatga agaacttgac tttgatatca ctgtttttga tgagggtaaa
     1261 gcagatttaa aagcagcagc aatttacaat gttccttttt tcccaaaagg tgcaaaagca
     1321 gatgaaattt acactcacat aaaagcacaa attgcttcta tgctcgaagt aaaatacatc
     1381 gattcaaaag tagtaagcat aagcggagaa aaaggagatt ttactgttaa tgatgagcaa
     1441 ggcttgggta taaaagcaga ttatatcatc gtagcaacag gggcaaacaa aagcgatatc
     1501 aaagaacttg aagattttgt aataccgcat gagcttatac caaaaccaaa caaattttgc
     1561 ttcaaacatc acgggagaca gattatcaaa gaaggaattt acgcagcagg acttgcttca
     1621 ggtgttacga ctatggtagc ttgcgcgatg ggaagtgcca atgaagcagc ttgcgcgatt
     1681 ttaagcgata tcaaaggtgc agtaagcgta tatcacgata cacctactac aagagtttaa
     1741 atcatcaaag cacaaaaggt gtgctttgat acacatcata attgagccaa tttgcaaaaa
     1801 tggtatttgc atttgaacgc caattgtatt ttatattgcc ctttttatca taataatttt
     1861 tagctttttg tatgaaatta tctcttacat attcttgatg taaagtctct ttaaaatatt
     1921 ccaaatgccc taaaataaaa atattctttt catctcttaa taaagccgaa ccgatttttt
     1981 tatttctaag caaaattttt aatttccctt gtttttgtag tgctaaaatt tgctcttcat
     2041 ccatgctaga atgtcttgaa tgaggcatta aaaccttttc atctaaattt gttaaaagca
     2101 gatcaggcga aactttatca tgcttataga ctccaaaaat tttcttatct aaagagattt
     2161 tatccacacc ataaaagtat tttaaagcag ccatggcacc ccaacaaata tacatagaac
     2221 ttgttacatt ttgctttaaa aaatcaaaaa tttctagcaa ttcttcccag taagcaacct
     2281 tttcaaaatc catttgttcc acaggagctc ctgtaacgat agcaccgtca aatttatgtt
     2341 ttttaacctc ttcaagaccc ttgtaaaatt tttccaaatg agtaaaagga gtatttttac
     2401 ccacatagct agtcgtggct aaaagtgtga tatttacttg caaaggagaa tttgcaagta
     2461 agcttagaat ttgattttct gtttcaattt tttttggcat aagattgaca atcaaaattt
     2521 cttgcggcct gatatcttga tgctttgctc tccttaatcc catgataaaa gcatgctctt
     2581 ttaaaagctc ataagcgggt atattttctg gaataatcag tggcattttt tctcctttat
     2641 ttaataaacc ttatttatga taaagcatgg tggaattttt atctcattcc actcaatgca
     2701 aacacacttt taactttcta tagcttgttt taaatccgct atcaaatcat cgctattttc
     2761 aagtcctatg cttaagcgta tagtagcttt cgtaatgcct gctttttgga gttcttcttc
     2821 gcttagttgc gaatgagtag tagaagcagg atggatgatc aaagacttgc tatcacccaa
     2881 atttgcagca agtaagaaaa gttgagtttt atcacaaatt cttctagcat gctcataatc
     2941 tttagcttca aagcttaaaa gcccgctagc aaaattttta tcaaaatatt ttttaaataa
     3001 attatgataa gcattacttg ctaaagtagg ataatttacg cccttgatat caggatgaaa
     3061 atttaaaaaa ttcgcaactt tttcagcatt ttgactgtgt ttttctatac gcactgccaa
     3121 ggtttcaagt ccttgtaaaa gtaaccaagc attttgaggt gctaagctag ctcctagatc
     3181 tctaagccaa gtgatgatga ctctaatact aaaaatcggc aaatcaagtg tatttaaatt
     3241 cagtccatga taacttggat caggagtgtt aaaagcttta tatctatcgt tatttttaag
     3301 caagtcgttt aaatcttttc tttctataag tgctccaccc aaagcactgc cttgaccgct
     3361 tacatattta cttaaactat gcacgattac atccacgcca tgtttaaaag gttggagtaa
     3421 gaaaggagta gcaacggtat tatcacaaat gctaacgatt ttatgttttt ttgctatttg
     3481 gcttattttt tctatatcag ctatggcaat ttgaggattt gaaagacttt cgaaaaaaat
     3541 cgcttttgtg ttttgatcta taactttttc caagctatct aaatcatcga tatcaaattc
     3601 cctagcttct atgccaaaat ttttaagtgt gtgagaaatt aaagtttgag tcccaccata
     3661 aattttgttc gaatacgcga cattatctcc cgaacttgct aaattgataa gagcataaaa
     3721 acaagctgcc ataccgctag caacaggaat tccaaaagcc cctccttcga cattagcaag
     3781 tctttgtcct aaaacatcgc ttgtaggatt gctaagtctt gagtaaatat tgccaagttc
     3841 ttgaagatta aaccttgctg cagcttgatc caaattttca aaattatacg cagtgttttg
     3901 atatataggc acactaatac ttctttgagt atcaaaatta taagctccgt gtaatgctaa
     3961 agtttcttta ttgaaattca ttttttatcc ttattgtgtc aatgaaaaaa tgttaaaaag
     4021 ctttttatcg gctttaaact aggctatttg aaaatgtaaa tttatagaat atgagtatat
     4081 acgagtagat taagcgtgcc aagcacgcat acagaaagaa gaaagcatta agttaaaact
     4141 aatataagac attttttctc ctttctaaaa aattattgat tattctatct ttaaaaaata
     4201 aaattaaaat taaattttaa aaaatttata tcacattgct taaaatttta ttgcaactca
     4261 ccccctagca agagtgagtt agcaataaat tgaaggcagt tcaagcctaa gcctagtatt
     4321 acaagactac caagataggc ttgtaaagca aggcttgctc ccttaaggga gcaaaaaaca
     4381 atattttata gaatactaag cttaaattat tgtttaagct ggattagagt ttgaagcatt
     4441 tgatcactcg ttgaaatggt ttttgaattt gcttgataac ctctttgaat gataataagc
     4501 tctgttaaag aacgacttaa atccacattt gacatttcaa gagctgaggt tttcatttca
     4561 ccacgacctc ctgttcctgc ttcacctact acgatattac cactatttgc agtgacttta
     4621 aaaagatttc caccaatttc ctcaagacct gagttatttg ccactgaagc cattgctatt
     4681 tttgctacag caaaggtttt gccattagta aattcaccta agatattacc tttgtcatcc
     4741 acacggatag catcaggttt taagttacct gaagtataac catcagttgc ctgtcctgtt
     4801 agagttgaag cagaatttga gcttacaagg ccgtcattgc ttccacttgt tccaaaagaa
     4861 agtttgattt gttgatttgg tgcggcacca ttgtttggtg agaaatttat agtttttggt
     4921 gtatagtttg ataaagaacc atcgttgtta aatcttgctg ttcctacgat gatattgttt
     4981 ggtccttcac ctgtagtgtt aatctctgca ggttctggta cacggatgat catttgccat
     5041 tcattacccc catcttgagt ggtgctttgc ttaacaaact gcacttctaa agtatgtttt
     5101 gaacctaagg aatcataaat ttcaagtcca gctgaaaaag cacttaagaa aagttgttcg
     5161 ctttggcgat tagaatttcc cacggttaaa actccatcaa aacctttaaa aatagttgta
     5221 aaagcatcat ttttactaat tttaccttga gtatcagtat aagctgttac attaaagctt
     5281 atattatgag gttttctatt atcttgtcca cctggaggtg ttacacctgg cctagctgga
     5341 atttcatttg gatttgatat tataaattcg cctgttgcac ccactgtaac ttttactcct
     5401 tcatttacat cttcacctgt aatttcaaat ccgccacttc catcataatc caccccatat
     5461 ctagcatctc tttgtaaaag ttctcttaaa tcctctgtgg ttctaaaagt tcttggagtt
     5521 gtatttaaca aagaaccttg aatggcattc atataattat tttcagcagt accagcagta
     5581 ttttgatttg caggattaaa aacaggtcca ccatctggat tatacatagg atctaattca
     5641 actggagttg aactataaat atatttatgt gctgttacta tttgtattct attttgattt
     5701 tgagcagcag ttcctgctat ccaagcacta ccagcattat ttactatagg attacctgca
     5761 ggtctaagtt gagtattttg ccaatcaaaa tcaggaggat tggtgttagt aactcttact
     5821 cttactaatt ctccagctga attttgagga tttacttgta aatctatatt tttcatgtta
     5881 tctgtagtgc catcagcatt atcattgata aaatcaatcc cactaccatc tgcttttttt
     5941 accgctttta ctcctgttcc atcccttgta tccgttggtg cagtaaaggt attgatataa
     6001 gctatagctt catctaaact ttttatagaa ttattctgta tatgaactcc atttaaagta
     6061 atatccaaag ttgtaggttt ttgctcatgt ccccaaaata taactctatc ttgcagaact
     6121 ttttgattag gatcaaaaac accattatta ccttgatttg cttgagctcc ttctccagct
     6181 gtactaaact tagcatctgc ataagatacc caaatccctt gtccatctct aagatttaat
     6241 cctgtgccat tagcattaaa aagtgatccc gcatccacac ccttttccgt cacttctata
     6301 gaatttttgg aagtcgtgta aaactgagtg attcctgtat cattttcatt ttttgctgtt
     6361 ccatcttttt tgttatatcc atgaacagaa tcaagtccat atataggagt tttagctgtt
     6421 cctatattta aaccactatt taaattcgct ttgatggcta cttctgtgga ttgcgctgca
     6481 gggatatgca tacctggatc gataaaaata ttttgcggag ttcttgagct atctatactt
     6541 tgagtatccc agttgatatt ccacccttgg acaacaaaac ctgcattatt aacaaaattt
     6601 ccataagcat cgagtttaaa atccccgctc cttgtaagat agtttgtaag accaccatca
     6661 tcactcacca taaaaaaacc atcaccattt atagcaacat cagtgttttt atctgtggtt
     6721 tgaactgaac cttgagaatg aattctagtt gtagaactta ctgaaacgcc aagaccgatt
     6781 tgaagtggat tagatccgcc tcttccatca gttggagctg tagcgatttt cacagtttgg
     6841 ctaaacatag tcccaaaatc tgcacgggag tatttaaaac cagtggtatt aacatttgaa
     6901 atgttattac cttcaacatc catcgcaact tgatgtgctt gtagtccgct tacgccagac
     6961 caaagtgatc tcatcatctt aaatccttta taaaatattg ctttaaaaaa tttaacgctt
     7021 tggctttaaa aaacttttgc gtttatgtga agtttacaag caagttctgt tccaactttt
     7081 gaaatttttt aaaaatttat agaaaaaatt taaaggtatt ttgggagttt atgaagcttt
     7141 gggcttttgt gtaataaaaa ttaccaaaat cacaccctaa ctcttaaatt tgctgcatgg
     7201 gttaaagcta ctgcaatagc atctgtgata tccaaaggct taatatcttt actcagtcct
     7261 aaaagccttt ttaccataaa agcaacttgt tctttagttg ctttggcttt tcctgtaacg
     7321 gcttttttta cttgtaaggg agtgtattct gcaaagtctc catgaatttg aagaattttt
     7381 aaagataggg ctccgcgaaa ttgtgcgagt tttaaaacgg tttttggatt gtaagcaaaa
     7441 aagatatctt ctatagccac ctcatcaaaa gaatgatttt taaaaatcaa gtccaaaccc
     7501 tcgcaaagct ctgtgatttg atactgtaag gtacttggtt ttatctttat aagtcctgct
     7561 tctatgagaa tgttttttcc tttgtcagct tctatgatag cataaccaca atttctcgaa
     7621 cctggatcta tacctaaaat tttcaaattc ataccttttg aaaaataaaa tacaaaagcg
     7681 gattttaacc tttttttata aaatttaaga taaaatttat acattatgca aaatttaaag
     7741 agagattatg aatccaagcc aaatacttga aaatttaaaa aaagaattaa gcgaaaacga
     7801 atacgaaaac tatctatcaa atttaaaatt caacgaaaaa caaagcaaag cagatctttt
     7861 ggtttttaac gctccaaatg aactcatggc taaattcata caaacaaaat acggtaaaaa
     7921 aatcgcacat ttttatgaag tgcaaagtgg aaataaagcc atcataaata tacaagcaca
     7981 aagtgctaaa caaagtaaca aaagcacaaa aatcgacata gctcatataa aagcacaaag
     8041 cacaatttta aatccttctt ttacttttga aagttttgtt gtgggggatt ctaacaaata
     8101 cgcttatgga gcatgtaaag ctataacaca taaagacaag cttggaaaac tttataatcc
     8161 tatctttgtt tatgggccta caggacttgg aaaaacacat ttacttcaag cagttggaaa
     8221 tgcaagctta gaaatgggaa aaaaagttat ttacgctacc agtgaaaatt ttatcaatga
     8281 ttttacttca aatttaaaaa atggctcttt agataaattt catgaaaaat atagaaactg
     8341 cgatgtttta cttatagatg atgtgcagtt tttaggaaaa accgataaaa ttcaagaaga
     8401 atttttcttt atatttaatg aaatcaaaaa taacgatgga caaatcatca tgacttcaga
     8461 caatccaccc aacatgctaa aaggtataac cgaacgctta aaaagtcgtt ttgcacatgg
     8521 gatcatagct gatataactc cacctcaact agatacaaaa atagccatca taagaaaaaa
     8581 atgtgaattt aacgatatca atctttctaa tgatattata aactatatcg ctacttcttt
     8641 aggggataat ataagagaaa tcgaaggtat catcataagt ttaaatgctt atgcaaccat
     8701 actaggacaa gaaatcacac tcgaacttgc caaaagtgtg atgaaagatc atatcaaaga
     8761 aaagaaagaa aatatcacta tagatgacat tttatctttg gtatgtaaag aatttaacat
     8821 caaaccaaac gatgtgaaat ccaataaaaa aactcaaaat atagtcacag caagacgcat
     8881 tgtgatttac ctagctaggg cacttacggc tttgactatg ccacaacttg cgaattattt
     8941 tgaaatgaaa gatcatacag ctatttcaca taatgttaaa aaaatcacag aaatgataga
     9001 aaatgatgct tctttaaaag caaaaatcga agaacttaaa aacaaaattc ttgttaaaag
     9061 tcaaagttaa gtgaaaggat gtgaaaaata aattctagag tgtgaaaaaa agaaattaag
     9121 caaagtatga taaaatacaa atttgattat tttgctttga aaaatttcac aatttcaaca
     9181 agcttattat tacaacgaat ttaaaattaa aataaaccaa ggagaaaaaa tgaagttaag
     9241 tatcaataaa aatactttag aatctgcagt gattttatgt aatgcttatg tagaaaaaaa
     9301 agactcaagc accattactt ctcatctttt ttttcatgct gatgaagata aacttcttat
     9361 tagagctagt gattatgaaa taggtatcaa ctataagata aaaaaaatcc gcgtagaatc
     9421 aagtggtttt gctactgcaa atgcaaaaag tattgcagat gttattaaaa gcttaaacaa
     9481 tgaagaagtt gttttagaaa ccattgataa ttttttattt ataagacaaa aaagcacaaa
     9541 atacaaactt cctatgttta atcatgaaga ttttccaaat tttccaaata cagaaggaaa
     9601 aaaccaattt gacattgatt caagtgactt aagtcgttct cttaaaaaga tattaccaag
     9661 tattgataca aacaacccaa aatactcctt aaatggtgca tttttagata taaaaacaga
     9721 taaaattaac ttcgtaggaa ctgatacaaa acgccttgca atctatactt tagaaaaaac
     9781 aaataatcaa gaatttagtt ttagtatccc taaaaaagct attatggaaa tgcaaaaact
     9841 tttctatgaa aaaatagaaa ttttttatga tcaaaatatg cttatcgcta aaaatgaaaa
     9901 ttttgaattc tttacaaaac ttatcaatga taaatttcca gattatgaaa aagttatacc
     9961 aaaaactttc aaacaagaac tcagtttttc aactgaagat tttatagata gtcttaaaaa
    10021 aatcagcgtt gtaactgaaa aaatgaaact tcattttaac aaagataaaa tcatctttga
    10081 aggtataagt ttagacaata tggaagcaaa aacagaactt gaaattcaaa cagaagtaag
    10141 tgaagaattt aatcttacta taaaaatcaa atatttactt gatttcttaa cttctataga
    10201 agaagaaaaa ttcactttaa gtgtaaatga acctaattca gcatttatag tcaaatccca
    10261 aggactatca atgattatca tgcctatgat tttgtaataa aacaagtaaa agataaagga
    10321 aaaatatgca agaaaattac ggtgcgagta atattaaagt cctaaaaggc ctagaagctg
    10381 ttagaaaacg cccaggtatg tatataggag acacaaacat aggcggactt catcatatga
    10441 tttatgaagt tgtggataat tctatcgatg aagctatggc aggacattgt gatactatag
    10501 atgtagaaat cactactgaa ggaagctgta tagttagtga taatggtcgt ggtattcctg
    10561 ttgatatgca cccaactgaa aatatgccaa ctttaactgt tgttttaact gtcctacatg
    10621 caggaggaaa attcgataaa gatacttata aagtttcagg tggtttgcac ggtgttgggg
    10681 tttcagttgt aaatgcactc tctaaaaaac ttgtagctac agttgaaaga aatggagaaa
    10741 tttatcgtca agaattttca gaaggtaaag ttatcagtga atttggtgtg ataggaaaaa
    10801 gtaaaaaaac aggaacaact atagaatttt ggcctgatga tcaaattttt gaagtgactg
    10861 aatttgatta tgaaattttg gctaaaagat ttcgtgaact tgcatactta aatccaaaaa
    10921 tcactataaa ttttaaagat aaccgcgtag gcaaacatga aagttttcac tttgaaggtg
    10981 gaatttctca gtttgttaca gacttaaata aaaaagaagc tttaactaaa gcaattttct
    11041 ttagcgtaga tgaagaagat gtgaatgttg aagtagcttt gctttacaat gatacttata
    11101 gtgaaaattt actctctttt gtaaataata tcaaaactcc agatggtgga acacacgaag
    11161 ctggttttag aatgggttta actcgtgtga taagtaacta tatagaagca aatgcaagtg
    11221 ctagagaaaa ggataataaa atcacgggtg atgatgtgcg tgaaggtttg atcgctattg
    11281 tgagtgtaaa ggtgcctgaa ccacaatttg aaggacaaac caaaggaaaa cttggttcaa
    11341 cttatgtgcg tcctatagtt tcaaaagcaa gttttgaata tttgactaaa tattttgaag
    11401 aaaatcctat cgaagctaaa gctataatga acaaagcctt aatggcagct agaggaagag
    11461 aagcagcgaa aaaagctaga gaattaacgc gtaaaaaaga aagtttaagc gtaggaactt
    11521 taccagggaa attagctgat tgtcaaagta aagatccaag tgaaagtgaa atttatcttg
    11581 tggaagggga ttctgcagga ggttctgcaa aacaaggtag agaaagatct ttccaagcta
    11641 tactgccttt gcgtggtaaa attttaaatg ttgaaaaagc aagactagat aaaattttaa
    11701 aatctgagca aattcaaaat atgattaccg cttttggctg tggtataggt gaagattttg
    11761 atctttcaaa acttagatat cataaaatca tcatcatgac agatgcggat gttgatggat
    11821 cacatataca aaccttgctt ttaactttct tcttccgttt tatgaatgaa cttgtagcaa
    11881 atggacatat ttatctagca caaccacctt tatatcttta taaaaaagct aaaaagcaaa
    11941 tttatttaaa agatgaaaaa gctttgagcg aatacctgat agaaacagga atagaaggtt
    12001 taaactatga aggtatagga atgaatgatt taaaagatta tttaaaaatc gttgcagctt
    12061 atcgtgcgat tttaaaagat cttgaaaagc gttttaacgt gatttctgtg atacgctata
    12121 tgatagaaaa ttcaaattta gttaaagcaa ataatgaaga attatttagt gtaatcaaac
    12181 aatttttaga aacacaagga cacaatatct taaatcatta tatcaatgaa aatgaaattc
    12241 gagctttcgt tcaaactcaa aatggcttag aagaacttgt gatcaatgaa gaacttttca
    12301 ctcatccact atatgaagaa gcaagttata tttttgataa gattaaagat agaggcttgg
    12361 aatttgataa agatatttta gaagttcttg aagatgttga aaccaatgct aaaaaaggtg
    12421 ctactataca acgctataaa ggtttagggg aaatgaatcc tgagcaactt tgggaaacca
    12481 caatggatcc aagcgtaaga agacttttaa aaatcactat tgaagatgca caaagtgcaa
    12541 atgatacctt taatctcttt atgggtgatg aggttgaacc aagacgcgat tatatccaag
    12601 cacacgctaa agatgtaaag catttggatg tgtaaattta tcattgaaga aatgatttct
    12661 tcaatgagtt ttgttttgta agagtatagc tagaggaatt cttcttcttg tatcgtattt
    12721 ttctccataa tatttttcaa gataatttaa aattttttct tcatcttcag gttctatttc
    12781 ccaaagtcct tcactatctt gcatccatct tatagctgct aaccaagctt ttctacttgc
    12841 atgcatattg gtaatgagat tggatccatg acaagctaaa caatttgctt ccactaaagg
    12901 tgaatcagga tcgataatca atcctgtatc agggttaatt tcaagatttt gagcccaact
    12961 tgcacttaaa aacaatgcta agatcaatat agtttttttc atacttaaac tccataaaca
    13021 ttaactctat ggcatgcatt attgatatat cctcctggat tccactgtgc taaaaccata
    13081 ggttgactgt taccttgact atcgatagct cttgcccaaa tttcataata tccttttgtt
    13141 ggtattgata tttgagcact ccatttttgc catgctaatc tatttaatgg tttttctacc
    13201 tttgctttag tccatgttac gccataatca ttgcttacat aaacttcact aacttcaagt
    13261 tctccagccc aagctttacc tctaacttca aattttttat ttgcttttat ttcagaacca
    13321 tttttgatat tagtaattac agatcttata ggcattgatt ctatgatttt catctcgcct
    13381 ttatagttaa aatctcctgg ttttaccgga tttacaggaa ctttataaga accttccatt
    13441 ttttcaccat cgtgaatttt atttcttact gaaattttat aaagccattt accgcttgta
    13501 cttgcagggt aaccaccaca aacaagtcta agtggatagc cattgactaa aggaatatct
    13561 ttgccttcat aagcccaagc tattagagtt tcatcttgta aagctttaga aataggaact
    13621 cctctactaa taggtgaagt ttcttcacca tttaattttg tatctatgcc ataatatccg
    13681 atataaaccg catcattttt gatgccacaa tcttttaaaa tatcttttaa acgcactcct
    13741 gtccatctac cgcaagctac tgcaccataa ccccattgag ttccttttgt gctaggtata
    13801 acttcggatc taccatttcc accgcattca actgttaagg cataagtata ggttttaaat
    13861 ttctttttta aatcttctat ggtgtaagat tttttattga taatgctttc tccatcgatt
    13921 tctaaagtcc aacctttatg aagtctttct tttatcgttt ctaggcttgg tggtaagcca
    13981 ttatttctaa caaagaaatt ttcaggttta gtaaaatcag aatcaagagc ataaatttca
    14041 gtttctgctg ttaatggttt ttcaccatga tagataagat cttttttacc ttctatttta
    14101 aaatcaggca attcttttgc caaagcctta cttcctaaaa aattctcaaa agaaaaattt
    14161 gacaatacgc tgataccaag caaaccaaat cctatatttt ttaagaaatc tctgcgatct
    14221 tctttttgat tgttttgttt cattgaaata tccttatatt tttatgattt ttttatttta
    14281 ttataaattt ta
//
LOCUS       DARGED010000031        14130 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.031, whole genome shotgun sequence.
ACCESSION   DARGED010000031 DARGED010000000
VERSION     DARGED010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14130
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.031"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..466)
                     /locus_tag="SFZ84_000749"
     CDS             complement(<1..466)
                     /locus_tag="SFZ84_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202887.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKEN
                     INDFNNTALQNELKQIYSNTQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKF"
     gene            610..894
                     /gene="gatC"
                     /locus_tag="SFZ84_000750"
     CDS             610..894
                     /gene="gatC"
                     /locus_tag="SFZ84_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG8202888.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVAKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            961..1524
                     /locus_tag="SFZ84_000751"
     CDS             961..1524
                     /locus_tag="SFZ84_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG8202889.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSAFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            1526..1999
                     /locus_tag="SFZ84_000752"
     CDS             1526..1999
                     /locus_tag="SFZ84_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG8202890.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            2000..3505
                     /gene="lysS"
                     /locus_tag="SFZ84_000753"
     CDS             2000..3505
                     /gene="lysS"
                     /locus_tag="SFZ84_000753"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG8202891.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            3502..4746
                     /locus_tag="SFZ84_000754"
     CDS             3502..4746
                     /locus_tag="SFZ84_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG8202892.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNNEKLQ
                     KNIKQELKKLASNFIIYERAMF"
     gene            4743..5288
                     /locus_tag="SFZ84_000755"
     CDS             4743..5288
                     /locus_tag="SFZ84_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG8202893.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            5302..6138
                     /locus_tag="SFZ84_000756"
     CDS             5302..6138
                     /locus_tag="SFZ84_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG8202894.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTASSSNNNDSTNFAMPDQEVPAEPTAATSENTAPQASAPKQEVKQTVKPKEE
                     AKKQIAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            6135..6923
                     /locus_tag="SFZ84_000757"
     CDS             6135..6923
                     /locus_tag="SFZ84_000757"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG8202895.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRGKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6998..7897)
                     /locus_tag="SFZ84_000758"
     CDS             complement(6998..7897)
                     /locus_tag="SFZ84_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HEG8202896.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7987..8802
                     /locus_tag="SFZ84_000759"
     CDS             7987..8802
                     /locus_tag="SFZ84_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG8202897.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKANPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8871..9653
                     /locus_tag="SFZ84_000760"
     CDS             8871..9653
                     /locus_tag="SFZ84_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG8202898.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9637..11628
                     /locus_tag="SFZ84_000761"
     CDS             9637..11628
                     /locus_tag="SFZ84_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG8202899.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKYNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11621..12346
                     /locus_tag="SFZ84_000762"
     CDS             11621..12346
                     /locus_tag="SFZ84_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG8202900.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            12374..>14130
                     /locus_tag="SFZ84_000763"
     CDS             12374..>14130
                     /locus_tag="SFZ84_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8202901.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNFFKSGFISKQDLLKALKILEKISK
                     NTEMLDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLDFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNFIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLK"
BASE COUNT         4966 a         1657 c         2681 g         4826 t
ORIGIN      
        1 aaaatttgta agcttctaat aatttatcat aattttttaa aaatatcgat ttatccccta
       61 aagataatgc gataatattt ttaagtaaag tgtttgtttg agtattactg taaatttgtt
      121 ttagttcatt ttggagagct gtattattaa aatcattaat attttctttt agtaaaaaga
      181 tagcgtaaag attggtattt ttatttttaa gttgttctaa aagattttta ttgctaggat
      241 cttgtattag attggcataa atttcatttg cttcttttgt tttataatcg tttatttttg
      301 agattataaa atttccagca aaccaagcaa ctaaaattat cacaacagca gatatataaa
      361 atttatactt gcgtataaat ctctctcctt tgataaaatt ttctataaat tgttcttctg
      421 tgttaagttc atttttaaca gcttttaaat tatcttttag tcccaaaatt tatccttgaa
      481 aaaatatttt tatttttgta tagaaaaatt atgatattgt atcatataaa ttgcaaaata
      541 tcctaaacaa tttaaagctt tttatgatat aattttcaaa attttaactt ttttattaag
      601 gtttaagaaa tgcaaataga tgagaaatta ttaagcaagc ttgaaaaatt aagtgcttta
      661 caaataacaa aaaacagaaa tgaaaccatt gcacagttaa gtgaaattgt gaattttgtt
      721 gcaaaattaa acgaacttga tttagattcc caagagatta ctgtgagtac tataaaaggt
      781 ggagctcctt tgaggattga tgaaataaga aatagcaatg ttattgatga ggttttagat
      841 tgtgctccaa aaaaacaaga acattttttt gttgttccta aaatcataga atgattaact
      901 tagcatttag tgcttatttg tagaataaat ttaaaacaaa aaaatcagag agtgattgaa
      961 atgaattttt attggtttga tgcttttatt ttaggattta ccttgctttt agggcttaag
     1021 ggtattatca atggtttgat aaaagaaatt tttggacttt tgggtattat tggtggtgtt
     1081 tttattgctt caaaatatgc aactcaagca gctgaattta tacaaagtgc tttttataag
     1141 atagaaaatc aaagcttagc tggatttgct ggatttttgg ccatattaat tattttttgg
     1201 atagtttgtt tattggtggg taattttctt tctaagttga ttaaattaag tggcctaggt
     1261 tttttagatc gtattggtgg ctttatattt ggtggagcaa aaatcttttt aatttttgca
     1321 attttggttt tttgtgtagc aagaatcgat tttttaaatg ataaattaga taattttgct
     1381 aaaaatagct atactttaaa tttacttaaa gaaacgggat cttttattat gaatcaacct
     1441 ttaacagaaa atagtctaga tcatgctaat gaaaagttgc aagatattgt aagtgattta
     1501 aacaatactc aaaaagggga gtgatatgct gatagaaaat gtggaatatg atgttttact
     1561 tgagagattt aaaaaaatat taagacaagg cggacttaaa tatactaagc aaagagaagt
     1621 gcttttaaaa actctttatc acagtgatac tcattacaca cccgaaagtt tatatatgga
     1681 aatcaaacaa gctgaacctg atttaaatgt aggaattgca actgtttatc gtactttaaa
     1741 tttgcttgaa gaagcagaaa tggtaacttc catttctttt ggttcggcag gtaaaaaata
     1801 cgagcttgcc aataaacctc accatgatca tatgatatgt aaaaattgcg gaaaaattat
     1861 agaatttgaa aatcctatta tagaaagaca gcaagccttg attgcaaaag aacatggttt
     1921 taaacttaca gggcatttga tgcagcttta tggtgtttgt ggtgattgta ataatcaaaa
     1981 agcaaaggta aaaatataaa tgtttgataa tattttagag cagcaaagaa tagaaaaagc
     2041 taaagagtta aaaaatttag ggattaatcc ttatcctcat tttttagaaa aggaaatgtc
     2101 tttaaagact tttaaggata aattttctta tattttagag caagttgaaa aaagagatga
     2161 aagtgtcaat gctgttgttg caggacgttt gaaacttttg cgtatagctg ggaaatcaat
     2221 ttttgcaaac attgaagatg aggatacaaa tttacaaatt tattttagta aagatagcgt
     2281 aggcgaagag ctttatacga ttttaaaaaa gaatttagag gtgggtgata ttgttttggt
     2341 taaaggtttt ccttttgtaa ctaaaacagg tgaatttagt ttgcatgcaa gcgaagtaaa
     2401 actcgctaca aaagctattg ttcctttacc tgaaaaatat catggattaa cagatattga
     2461 gcaaagatat cgtaaacgtt atgttgatat gataatgaat gtcgaagtta gaaaagattt
     2521 tttagtgcgt tctaaagtgg tgagtttaat ccgtcatttt tttgaaaata aaggcttttt
     2581 agaagtagaa actcctatga tgcatccgat tgcaggtgga gcaaacgcta agccttttgt
     2641 aacttttcat aattctttag gcgtagaaag atttttaaga attgctccag aactttatct
     2701 taaaagactt atagtaggtg gttttgaggc ggtttttgaa atcaatcgtt gttttagaaa
     2761 cgaaggtatg gatttaactc ataatcccga atttacaact atagaatttt attgggccta
     2821 tcataattat aaagatttaa tggatttaac cgaagaactt tttgctttac ttttggataa
     2881 acttaattta ggaaaaacaa tagaatttga tggaaaaatg ataaattttt ctaaaccttt
     2941 tgaaagaata acctataaag acgcactttg taagtatggt ggtttagata gggatttaat
     3001 cgaagataag gaaaaaattc ttactaaatt aaaagcagat ggttttgaag cgaatgaaaa
     3061 gcttgaactt ggacatttgc aagctgaact ttttgacaat tatgtggaag aaaaattgat
     3121 caatcctact tttgtgattg attttcctat ttccataagt cctttatcaa gacgtagcga
     3181 tgaggattct cagattgctg agagatttga gttgtttatt tgcggaagag aattggcaaa
     3241 tggttttaat gagcttaatg atcctcttga tcaatatgag agatttttaa aacaaattga
     3301 agctaaaaat gcaggcgatg aagaggcttg cgaaatggat gaagattttg taaatgcttt
     3361 gggttatgga atgcctccaa cggcagggca gggtataggc atagatagac ttgttatgct
     3421 tttgacaaat aaaaaatcta ttcgagatgt gatattgttt cctgcaatgc gtccattaaa
     3481 atcagaacta aaggagaaag aatgagttta gaaatgtttg ataaagaaat ttttgattta
     3541 acaaacaaag agttagagcg tcaatgcgaa ggtcttgaaa tgatagcgag tgaaaatttc
     3601 actttacctg aagtaatgga agttatggga agtatcttga cgaacaaata cgcagaaggt
     3661 tatccaggta aaagatatta tggtggttgt gaatttgttg atgagattga aactctagct
     3721 attgaaagat gtaaaaaact ttttaattgt aaatttgcta atgttcagcc taattcaggt
     3781 tctcaagcta atcaaggtgt ttatgcggct ttgattaatc caggtgataa aattttagga
     3841 atggatttaa gtcatggtgg acatttaact catggtgcaa aagtaagttc ttcgggtaaa
     3901 atgtacgaaa gttgttttta cggcgtagaa cttgatggaa gaattgatta tgaaaaagta
     3961 agagaaattg ctaaaaaaga aaagccaaaa ttaatagttt gtggagctag tgcttatgca
     4021 agagtgattg attttgctaa atttagagaa atcgctgatg aagtaggcgc ctatcttttt
     4081 gctgatatag cacatattgc aggtcttgtt gtagcaggcg aacatccaag tccttttcca
     4141 cacgctcatg tagtaagttc aactacgcat aaaactttgc gtggcccaag aggtggtatt
     4201 attatgacaa atgatgaaga gcttgctaaa aaaattaatt ctgccatttt tccaggtatt
     4261 caaggtggtc ctttgatgca tgtaattgct gcaaaagcag taggatttaa atttaatctt
     4321 agcgatgagt ggaaagttta tgcaaaacaa gtaagaacca atgctcaagt tttagctaat
     4381 gttttaatgg atagaaaatt taaacttgtt agcgatggaa cggataatca ccttgtttta
     4441 atgagttttt tagatcgtga gtttagcgga aaagatgcag atttagctct tggaaatgca
     4501 ggtattactg caaataaaaa taccgttcca ggagagatta gaagtccttt tatcacaagt
     4561 ggattaagac ttggaactcc agcccttact gccagaggtt ttaaagaaaa agaaatggaa
     4621 attgtgtcaa attatattgc agatatttta gatgatgtta ataatgaaaa attacaaaag
     4681 aatattaaac aagaattaaa aaaacttgca agtaatttta ttatttatga aagggctatg
     4741 ttttgatttc accaatggat atgtcgctaa ttaaaataat tggcgatcat tattatataa
     4801 gacgcgataa aattgtaaat aaaattacac atagaggtcg cttatttttt gataaatttg
     4861 aaagagttga tgctccttta aatttaaatg tcatgagaga acacgctgct aaaaaaattg
     4921 ttgtcgctca tgatttaata acaaaagata ataaagtaga aaatattgtc tttgattata
     4981 atggttttaa tgctgaaaga ttttatcacc gtgcacaact tattttaaga gaagaaggtt
     5041 ttataaattt cacagcctat aagactaaaa ctccaggaca tttacatctt tatattcaca
     5101 aaggacacac ggcgttaaac gaaggttatt ctttagcgtc taaactttca atgatgtttg
     5161 caagtaaaat gccagtagaa tggaaggtgt ttcctagtat ggatgtacct agggaattta
     5221 atattttaat attgccttat gaggtttatc aaaaagaacg aggaagttct tggtctaagc
     5281 atatgtaaga aaggacaaat tatggaaaat caaaaaaatg aatttgatga tattatttta
     5341 gaaaaaagta ataaaagtga aaaagtaaaa aaaattcttt tacgagttat tgctttagtt
     5401 attttgtttt tagctatcat gatagttatg aagcttatta atggtagtgg tgatgaaaat
     5461 acgcaaaatc aaagtgtatt gccaagtgaa cctatagcaa ctcaagacaa taacaatgat
     5521 acttcttttg aaagtatgcc aattacagat aatacttcag cagaagatca atttgaggca
     5581 ttaagaaaac aatttcaaga tgaacaaaat acaactcaaa atacaacagc ctctagttca
     5641 aataacaatg atagtacaaa ttttgctatg cctgatcaag aagttccagc agaaccaaca
     5701 gcagctactt cggaaaatac cgctccgcaa gcaagtgctc ccaaacaaga agtaaaacaa
     5761 actgtaaaac ctaaagaaga agcaaaaaaa caaatagctg taaaaaaaga aaaagaaagt
     5821 gcaaaacaaa cccctaaaaa agaacaaaat gcaaatgatt tatttaaaaa tgttgatgct
     5881 aaacctgtac atccaagtgg tttagcatcg ggtatttatg tgcaaatttt ctcagtaagt
     5941 aatttggatc aaaaatcaaa agaacttgct tctgtaaagc aaaaaggtta tgattataaa
     6001 ctttataaaa ctacagttgg aggtaaagaa attaccaagg ttttaatagg gccatttgaa
     6061 aaggcagata ttgcagcaga acttgctaaa atccgtaagg atattgcaaa agatgctttt
     6121 tcttttactt taaaatgaaa tttttagcag ttataggcga tcctatttct cactctaaat
     6181 cgcctagaat gcataataat gctattaaag ccttagggct tgatagcatt tatacacgct
     6241 atcatttaag aaatgctaac tgtttaagag aagatttttt taaattagga cttagtggag
     6301 ctaatattac tttgcctttt aaggaaaaag ctttagatat tgctgatgtg aaggatgatt
     6361 ttgctagaaa tattggctct gcaaatactt tatgcttaaa agaagataaa atttacgctt
     6421 ataatactga tgctttaggt tttttagaag ctattaagga ttttgataat ataaaaaaag
     6481 ctttgatttt gggtgctgga ggtacagctt tggcgcttgc ttatgcatta aaacaaaaag
     6541 gcgtagaagt gtatatagct aatcgtggta aagaaagatt taaagatttt ttagcttatc
     6601 caacttatct ttataaaaac ttgcaagatt ttgactttga tttggttata aattcaactt
     6661 ctgctggatt aaaagatgaa aatttacctt gtgatagaga gcttttagat agaattttac
     6721 ctaaagctaa atttgctttt gaggtaattt atggcagaga aacacctttt tatagattat
     6781 gtaaagagta tcatttaaaa attaaagatg gacttgatat gcttttatgg caaggagttt
     6841 ttgcttttga actttttttt gaaatacaag ataaaagaga gatgataaaa aatgcaatgc
     6901 aacaggcatt gattttaaag tagaatgata gttatttttc ttgtataaga aaatcttatt
     6961 ttttgtgtga gaaagtttaa ttttcccaca agttttatca ttcaaatatt tctaccccat
     7021 cttgattttt actttgatta ttttgatttg ttgaagatgg atttgtagga atattttgtg
     7081 taggcgtgtt ttcaattgta ttattttgat tagaatttgt ttgaggtaag ctttcttcaa
     7141 aggtagcatc gccatcaaaa ctattaaaac cactgtttgt attaggtata gttttgccta
     7201 tgtctgttgc ttttggtaga ttgttataaa gtgtatttaa tgtattttta taaaaagcta
     7261 aaaaactttt atcaatttca aaagcaggtt gctctaaacc tttattgagt tgagttggta
     7321 cggtagagat agtagtttta aacatattaa ccccatcatc atttttaata ggatagttaa
     7381 gcgcaactaa agaatctagt ttagtgctac ttgaaagatt ggttgaattt tgtggattgt
     7441 gtgcatctat aaaatctatt ttacctttaa aatttatacc taaattggat tttacataat
     7501 ctccactcat aaaattgctt gttttttgtg catttttttc ttccgtataa atactgattg
     7561 aacttttaag agtgtagtct ggattagtag taactatttt atagcctttt agttgagcga
     7621 tggttttgat ctgctcttct aaattttgtt ttaaaagatc aatttctttt tctatgcgaa
     7681 ttttaagcac tgaattttca aaataatcag aataattgtt attttgttct atattaatag
     7741 gctcaagagc aatgcttact ccagaatcaa taggttcaac ctttgttgga acttggggtt
     7801 taaaatttgg catagaaaca ttgacaaaat tactgcttgt acccccacaa gctgctaaaa
     7861 ttaacatact actagcaagt aaaatatatt ttttcatttt ttacctttat ttaatgtgtt
     7921 tgtgttaatt atagcaggtt aaagtttttt tgttatattt ttataaaaga aaattaggaa
     7981 agatatatgg aattttggca gcatatttat tcaaatttta atgttatagc ttttagcatc
     8041 tttggtttaa aggtgcattg gtatggcatt atgtatgtta tagctttgct tttggctttg
     8101 cttttggcta aattttttgt aagaaaattt caactagaca ttaatgaaaa acatttggat
     8161 agttatttta tatgggttga aataggggtt attttaggtg caaggcttgg atatattttg
     8221 atttatgatg caaatactat gtattatatt actcatcctt ggcaaatttt taatccttat
     8281 attaatggtg aatttgtagg tattcgaggt atgagttatc atggagcaat tataggattt
     8341 ttgatagcta ctttattgtt ttgtaaaaaa tataaagcaa atccttggat ttttcttgat
     8401 ttggttgctt taagtgttcc attggcttat gtttttggtc gtataggaaa ttttttaaat
     8461 caagagcttt ttggtcgcat tacaaatgtg ccttggggaa tttatgttga tggagtattg
     8521 cgccatccat cgcaacttta tgaagcattt ttagaaggta ttgttgtttt tattatagtt
     8581 tatttagcaa gatttaagca aagttttcaa ggggaattga ttcttgtgta tgctggtgct
     8641 tattcattgg caagatttat atgtgaattt tatcgcgagc ctgattttgg tataggtttt
     8701 gttttatggg gtatgagtat ggggcaaatt ttaagtttta taatgtttat aacagctttg
     8761 ttagtttata tttgtataaa gtttaaaaaa gtaaatattt aatctatctt aaagactttt
     8821 gtaatataat gaaatggatt tttttaattt ctttttacaa aggagtaaag atgcgtgagc
     8881 ttatcgaagg ttatttgggt aagagcattg agggcaaaaa aagtaaaatg cctgcgaaat
     8941 tagactttat ccaaagcgcc tcagggcttt ttttaggtct ttttatgtgg gtgcatatgc
     9001 tttttgtttc tacaatttta gtcagtgagg atttttttaa ttctgtggta cattttttag
     9061 aattaaaatt tgtttacgat aatcctgtta tgagttatct tacttcattt ttagccgcct
     9121 gtgttttagt ggtttttttc gttcatgctt tacttgcaat gagaaaattt cctattaatt
     9181 accgtcagta tcaaatacta agaacacaca gtaaaaaaat gaatcacagc gatacttcgt
     9241 tatggtgggt tcaagctttt acaggtttta ttatgttttt cttaggttct gctcatctta
     9301 tttttattgt aaccaatgca gataaaatca gcggcgatat gtcaggagat agggttgtaa
     9361 gtcattttat gtggcttttt tatgctgttc ttttagtctg tgttgaactt catggaagta
     9421 tagggcttta tagactttgt gttaaatggg gttggtttga aggaaaaaat gtaaaagaaa
     9481 gtcgcaaaaa gcttaaaact gctaaatgga taatcagtat tttcttccta gttttaggtg
     9541 tgttaagtct tgcagcattt ataaaaatag gttatgaaaa ctaccaaaat caaacccaaa
     9601 ctactgcgat gataaaaaac tacaatggag caaattatga atatacaata tagtgatgct
     9661 ttagtaatag gtggaggatt agcaggtctt agagcggcta ttgaagtagc aaagagtggc
     9721 caaagtgtaa cacttttaag tatttgtcca gtgaagcgtt ctcactctgc agcggtgcaa
     9781 ggaggtatgc aggcaagttt agcaaatggg gcaaaaggtg agggtgataa tgaagatctt
     9841 cacttcgcag atacagtaaa aggaagtgat tggggctgtg atcaagaagt agcaagaatg
     9901 tttgctcaaa ctgcgccaaa agcagtgcgt gagcttgcgg cttggggtgt gccttggact
     9961 agagttacta aaggtccaag aactgttgta atcaatgcac aaaaaactgt gattgaagaa
    10021 aaagaagaag cgcacgggct tattaatgct agagattttg gtggaactaa aaaatggaga
    10081 acttgctata tcgcagatgc aacagggcat tgtatgcttt atggtgtagc aaatgaagct
    10141 attaaacatc aagtaaaaat tattgataga atggaagcag taagaattat ccatgatggt
    10201 aaaaaatgct taggtgtgat tgctagagat ttaaccaatg gacaactcat tgcttatatc
    10261 gcaagaggaa ctatgatagc aacagggggc tatggtagaa tttataaaca aactacaaat
    10321 gcggtaattt gtgaaggaac aggtgctgct atcgctcttg aaacgggact ttgtagactt
    10381 tcaaatatgg aagcagtgca atttcaccca actcctattg taccaagcgg tattttgctt
    10441 actgagggct gtcgtggtga tggtggaatt ttacgtgacg tggatggata tcgttttatg
    10501 cctgattatg aaccagagaa aaaagaactt gcaagccgtg atgtggtaag tcgtagaatg
    10561 atggagcata ttcgcaaagg taaaggtgta aaaagtcctt atggggatca tttatggctt
    10621 gatatttcta tattgggtcg tgctcatgtg gaaaaaaatc tccgcgatgt acaagatatt
    10681 tgcaaaactt tcaatggtat tgatccagca gatgaaggtc caaaaggttg ggcgccagtt
    10741 cttccaatgc agcattattc tatgggtgga attagaacta aaccaacagg tgaaagtcaa
    10801 tggttaaacg gactttttgc ttgtggagaa gcagcttgct gggatatgca cggatttaat
    10861 cgtttaggtg gaaattcatg tgctgaaact gttgtagcag gtatgatagt gggagattat
    10921 tttgcagatt attgtaaaaa taatggtgaa gtaattgaca caaatgtagt aaaagacttc
    10981 ttaactaaag agtatcaata tttaaaatct ttagtagata aagaaggtaa atataatgtt
    11041 tttgaaatta aaaatagaat gaaagaaatt atgtgggata aggtggccat ctttagaaca
    11101 ggtgaaggtt tgaaagaagc agtagatgaa cttgaaaaac tttataaaga ttctcaagat
    11161 gttaaagtac attgtaaaga acttgattgt gcaaatccag agcttgaaga agcgtataga
    11221 gtgccaagaa tgttaaaaat agcactttgc gtagcttatg gagcgctttt aagaacagaa
    11281 agtcgtgggg cgcattatag ggaagattat ccaaaaagag atgatttaaa ttggatgaaa
    11341 agaaccaata ctttttgggt agaaggcgaa accttaccac gcatagaata tgaagagctt
    11401 gatattatga aaatggaaat tccaccagca ttccgtggat atggagctaa aggaaatatt
    11461 atagaaaatc ctttaagtga aaaacgccaa gctgaagtgg atgcaatacg tgaaaaaatg
    11521 gaagctgaag gcaaaggtcg ttatgaaatt caaaacgctt taatgcctta tgaattacaa
    11581 gctaaatata aagcaccaaa ccaaagaata ggagttgatt atgagtagaa aattgacaat
    11641 aaaggcattt aaatataatc ctttaagcaa aatttctaaa ccacattttg tgacttatga
    11701 gcttgaagaa actcctttta tgacggtttt tgtatgtttg actttgatcc gtgaaaaaat
    11761 ggatgcggat ctgagttttg actttgtttg tcgtgcaggg atttgcggat cttgtgcaat
    11821 gatgattaat ggagtgccaa aacttgcttg taaaacttta actaaagatt atcctgatgg
    11881 agtgatagag cttatgccta tgcctgcatt tagacatatt aaagatttaa gcgtgaatac
    11941 aggagagtgg tttgaagaca tgtgtaaacg cgttgaaagc tgggtgcata acgaaaaaga
    12001 aactgatatt tctaaacttg aagaacgtat tgagccggag gttgcggatg aaacttttga
    12061 acttgatcgt tgtatagagt gtggaatttg tgtagcttct tgtgcaacta aacttatgcg
    12121 tccaaatttc atagctgcta caggactttt aagaacagct agatatttac aagatccgca
    12181 tgaccataga agtgtggaag atttttatga attagtgggc gatgatgatg gtgtttttgg
    12241 ttgtatgtca ttgcttgctt gcgaagataa ttgtcctaaa gaattacctt tacaaagtaa
    12301 aatcgcttac atgagaagac aacttgtcgc tcaaagaaat aaataaatct ttcccctttt
    12361 taaggggaag attatgaaag aattattcca aaaaatttgg caaaatgaac ttcaattttt
    12421 aaattttgat gctaaatttc aagataaaag caaacttgat acggccgagt gtgcgattat
    12481 tttaagtgtc aataaagaca attatgaaag atattttctc ttaaaagaat ttcaagagct
    12541 ttgcaaaaaa attgatttaa gagtggatat ttttagtata caaaatgctc aaatttgtat
    12601 tttaaatttt tttaaatcag gttttatttc aaagcaagat ttgcttaagg ctctaaaaat
    12661 tttagaaaaa atttcaaaaa ataccgaaat gcttgatttt atttcacaag aaaaagttca
    12721 aagtatagat caaaaagctt tatttcaaaa tgattttaaa gaattaaaca ccattaattt
    12781 agagcttcaa aagctaagtt ttgatgaaaa tttaaaatca agacttcaaa aaactttgga
    12841 aaaatttcaa aatttagagt ttaatatagc catcactggc gtgatgaatg caggaaaatc
    12901 aagtctttta aatgctcttt taaaagaaga ttttttaggg gtttcaaaca tacctgaaac
    12961 agctaattta acagtattaa gctatggtaa gagtgaagaa gcaaagatat atttttggga
    13021 taaaaaagaa tggcaaaata tacttgaaag ttcgcacttt aatgcagatt taaaagaatt
    13081 tattgacaag ctggataaga gtgtaaatat agaggatttt atcaaggata aacctttaat
    13141 acaaaatatc gcactttgtg aacttaaaaa tttcagttca gctaaaaata aaatttcagc
    13201 tttaattaaa aaaatagaaa ttaaaagtca tttagatttt ttaaaaaata atatttccat
    13261 agttgatact ccagggcttg atgatgttgt agtccaaaga gaaattgtta caaatgagta
    13321 tcttagagaa agtgattttt taattcattt aatgaatgct tctcaaagct taactcaaaa
    13381 agatgcagac tttttggtgc attgtctttt aaattcaagg ctgagtaagt ttttaattgt
    13441 tttaactaaa gcggatttgt taagcaaaaa ggatttagaa gaagtcattg tttataccaa
    13501 agaaagctta aaatcaagac ttgtggattt agatgaaaat ttggtggaaa agattgattt
    13561 tttatgtgtg agtgctaaaa tggcaagtga tttttataag ggtttagcac ctaaggaaag
    13621 tttgcaaaaa agtggtatgc aagaatttga aaactatctt tttaacgagc tttatgcagg
    13681 agaaaaaagc aagattgcct taagagctta caaaaaagaa ttacatttgg aacttaaaaa
    13741 tattctaagc aaatatgaaa tgcaaaatcg tcttattaag gagaataaac aaggtgtaag
    13801 tgaagaaaat caaaagcttt tacttgaact tcaaaagcaa aatatcttat taaaagaagc
    13861 acaagatgaa atttcaaatt tcattgtaaa acttaaaaat atagataatg gtatagataa
    13921 tcttgtttta cttttggcta aaaaattaaa agaacgcttg atagatgagt ttaaatattt
    13981 aaaaaataat gcacaaaagc ttaatctttc tcgtatttta aatatagttg atattactac
    14041 aaaagatggg attaatgata ttttaagaga aattaaattt gaaaatatta aaaaaatcga
    14101 ggagcttaaa acaaatttgt ctttaaaata
//
LOCUS       DARGED010000032        13965 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.032, whole genome shotgun sequence.
ACCESSION   DARGED010000032 DARGED010000000
VERSION     DARGED010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13965
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.032"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..241)
                     /locus_tag="SFZ84_000764"
     CDS             complement(<1..241)
                     /locus_tag="SFZ84_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG8202902.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQ"
     gene            complement(252..851)
                     /locus_tag="SFZ84_000765"
     CDS             complement(252..851)
                     /locus_tag="SFZ84_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8202903.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAEEDEDNEHPQFYIYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            999..1664
                     /gene="dccR"
                     /locus_tag="SFZ84_000766"
     CDS             999..1664
                     /gene="dccR"
                     /locus_tag="SFZ84_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG8202904.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKALRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            1657..2847
                     /gene="dccS"
                     /locus_tag="SFZ84_000767"
     CDS             1657..2847
                     /gene="dccS"
                     /locus_tag="SFZ84_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG8202905.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISILNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(2890..4527)
                     /gene="groL"
                     /locus_tag="SFZ84_000768"
     CDS             complement(2890..4527)
                     /gene="groL"
                     /locus_tag="SFZ84_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG8202906.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(4549..4809)
                     /gene="groES"
                     /locus_tag="SFZ84_000769"
     CDS             complement(4549..4809)
                     /gene="groES"
                     /locus_tag="SFZ84_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG8202907.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            4971..7511
                     /locus_tag="SFZ84_000770"
     CDS             4971..7511
                     /locus_tag="SFZ84_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202908.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLQGALSPFKLGFDLDYLISLKQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGRGYLLGSNVLLNVRMYNYSPIALNLDAKNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKHNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITDDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKNTGNKVDKAVNKLLNKIF"
     gene            7520..8131
                     /locus_tag="SFZ84_000771"
     CDS             7520..8131
                     /locus_tag="SFZ84_000771"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG8202909.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLTAKHRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGILEKI
                     QKDENGVDFHITLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            8095..8775
                     /locus_tag="SFZ84_000772"
     CDS             8095..8775
                     /locus_tag="SFZ84_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEG8202910.1"
                     /translation="MGRSGKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNTALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDNKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            8777..8980
                     /locus_tag="SFZ84_000773"
     CDS             8777..8980
                     /locus_tag="SFZ84_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202911.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEISEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(8977..10137)
                     /locus_tag="SFZ84_000774"
     CDS             complement(8977..10137)
                     /locus_tag="SFZ84_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8202912.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDRQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQIVKEALASNQPNPPKEEDFENYIEF"
     gene            10259..10984
                     /locus_tag="SFZ84_000775"
     CDS             10259..10984
                     /locus_tag="SFZ84_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG8202913.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            10987..12369
                     /locus_tag="SFZ84_000776"
     CDS             10987..12369
                     /locus_tag="SFZ84_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8202914.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            12373..13179
                     /locus_tag="SFZ84_000777"
     CDS             12373..13179
                     /locus_tag="SFZ84_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG8202915.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(13123..>13965)
                     /locus_tag="SFZ84_000778"
     CDS             complement(13123..>13965)
                     /locus_tag="SFZ84_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG8202916.1"
                     /translation="TNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGL
                     LFSLIFFILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMA
                     FWVFYLLCKNIKIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFAN
                     KFNNLINIILLNIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLIN
                     YGDLLNFILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFI
                     MIVI"
BASE COUNT         4825 a         1888 c         2264 g         4988 t
ORIGIN      
        1 tttgtttaag atttttgaca attttatcta tttttttact tgccttttga taatccccat
       61 ctttaagttc ttctagggca ttaacagcaa aagaaaaatc ttcaacttca ttaagataag
      121 cctctatggc ttcttttact atggttgatt ttggtttaga aagattttta cttaaattat
      181 ccaaacgctc cttaagctct aaaggcattc taaaagaata agtttttaca ttgcgtttca
      241 ttttatcctc cttaagaata ttttttgtaa aattttatag cttgtttaca agttttacaa
      301 gtaaatttat gaccttgtaa ttctattttt tgatgaatgc tataaggaac atcgtgaatt
      361 ttaccaggac aattacaggt ataaatataa aattgtggat gctcattatc ttcatcttct
      421 tctgcttcaa agctaacatc gccaccatca tctgtagaca aagaagaact tctccatttt
      481 tcaactttca tgtcttcata tagtatgtgt tctaaaagcc actttttagc cactatataa
      541 agtttttctt taagatcatt ggttgatttg atatctttga ttaaattaat catggtttgg
      601 atgatttctt tatgtatttt tcgatgttct tctaaatttg gatagcctat tagctgcatg
      661 tatttttctt catcattaaa gtgatctttc atataattaa aaaattcagc caaaagttct
      721 ttgacttcat ttttacttac agatctatct gatacaactt caacttttgc agcaagttta
      781 aaaagctttt tatgctgctc atcaatttta gcattgtgca cactatagct gttatcccat
      841 tttggaagca ttttaactcc ttaaggaaaa atttatttgt atgaaaggat tatagataaa
      901 aataaattaa ataaaaatga aattttatta aataattgat aagaattttg atacaatgat
      961 atatatttaa gagatttgaa gttagaaaga tttaaattat ggctgctaaa attttacttt
     1021 tagaagatga tttgagcttg agtgagatca ttgaagagtt tttaaacgat gagggatatg
     1081 aagtattttt atgcgataat gcgcaagaag ctttagatat ggcttatgaa agatattttg
     1141 atctttggat tttagatgta aaagttcctt taggagatgg attttcatta cttaaagcat
     1201 taagaaaaag cggaaagcaa actccagcaa ttttcatgac ttctttaaac acaacaaatg
     1261 atttaaaaca aggctttgac gcaggttgtg atgattatat aaaaaaacct tttgaacttg
     1321 ccgagttatc tatcagggtt aaagctttgc ttaaaagagc tttttcacat aaaaatgaag
     1381 attttgaaga tttaggagat ggatttagat ttgaatttac tacacaaatt ctttaccata
     1441 ataataaagc cttgacttta ccgagtaaag aaattaagct tttgtcttta ttacttaaaa
     1501 ataaaaacaa ctttttaagt acagagagaa tttttgaaga actctgggat tatgatgagg
     1561 agcctagtga gctaagttta agggcttatg tgaaaaattt acgtaaaatt ttaggaaaag
     1621 aaaaaattat aaatcaaaga ggcaggggat attgctatgg ctaaaaaagt cattaggcaa
     1681 attttattaa tctacctaac aactacaggt atttttttaa ctattttttt tgcattatgg
     1741 tatcaaaaat tatatgaaga attagttgtt ttaaagggtg ccactttgag agaaaatcat
     1801 agaaacattg ttataagcat cttaaattct cgttttaccc ctatagatat aagtgcaaaa
     1861 aatattgctc aaagcacagc actaaaattt gctatatttg atgctaaaaa gattgttttt
     1921 agtaatatag attttgattt aagaaaggca aagatagagc ttaaaggtag aggtatttgt
     1981 gataataagg tttttttcct tgctcctatg agtgcagatc attatttttt aagacatgct
     2041 agcaatgaag aagtaaatac taacgatggt ttgcaaattt taatacaggg tgaagatgtt
     2101 ggcaaagatc ttttttggat tagaacgaaa gtttttagtt ttgctattat ggctttttgc
     2161 atattgggtt taatatctta tattttagta aaaattgctc taaagccttt ggaggataaa
     2221 atcagcatac taaatcgttt tattaaagat tcaactcatg aactcaatac cccattaagt
     2281 gttattttga tgagtataga acaacttgag catcaaaatt taggagataa tactaaattt
     2341 acaaggatta agcttgctgc aaaaagtttg tctcaagtgt actctgatct tgttttttat
     2401 aatttcccta ataccttaga aacagaaaaa caaaaatttg atttaagaat actacttgaa
     2461 gaaagattgg aatattttaa agtatttttt gagcaaaaaa aaattacact aaagcttgat
     2521 ttaaatcaag caaatatttt tgctcctaaa agtcaaattt ctaaattgat tgataatctt
     2581 ataagcaatg ctattaaata caataaaaaa ggtggagtaa tttctataat tttaaaagcc
     2641 aattttttaa gtattgcgga tacaggttgt ggaatttcaa agtcaaattt aaatcatatt
     2701 tttgatagat atacaagatt taataccgat caaggaggat ttggtatagg gctttctttg
     2761 gtaaaaaaag tttgtgatga taatgatatt aagattattt gcgaatctgt agaaaatcaa
     2821 gggagtgttt ttaaattaaa ttggtaatca gcaaggaaaa tccttgctga taagaggtta
     2881 gagtagatat tacatcattc cgcccatgcc acccattcct cccataccgc tcatatctgg
     2941 catagtaggt ttatcttctt taatttcact aattgttgct tctgtggtta aaagcatact
     3001 agctacagaa actgcattga gtaaagctac tctttctact ttaacaggat cgataattcc
     3061 actttcaagc atattaacat attcaccttt tgcagcatca aatcctgtgt tttcatcttt
     3121 agcattttct acgctattta caaccacacc tgcatcaaat cctgcatttt cagcaatttg
     3181 tcttaaaggt gctcttaaag ctctttcaac gatagctgcg ccaattgctt catcaccctg
     3241 taaatcaagt ttgattttag cttttgcttt gataagcgct gcaccaccac cgattactat
     3301 accttcttca actgctgctt tagtagcgct taaagcatcg tcaacgcgat cttttttctc
     3361 tttcatttca gtttcagttg ctgcacctac tttaataact gcaacaccac cacttaattt
     3421 tgcaagtctt tcttgtaatt tttctctgtc ataatctgaa gttgtttcag caatttgtgc
     3481 tttgatttga ttgactctcg catcaatatt tgctttttcg cctgcaccat ttactatggt
     3541 tgtattgtct ttatcgatga ttacactaga agcttgtcca agatcttgta tagtcgcact
     3601 ttcaagagtt cttccaagtt cttcagaaat cacttctcca cctgttaaaa tcgctatatc
     3661 ttcaagcata gcttttcttc tatcgccaaa acctggagct ttcactgctg aaatattaag
     3721 aacaccgcga agtttattta caaccaaagt tgcaagcgct tcaccttcaa tatcttcagc
     3781 gataattaaa agtggtttgc ctgttttttg aatttgttct aaaaccggta ataaatcttt
     3841 taaatttgta atttttttat caaaaagcag gatataaggg cttgaaagct ctactgtcat
     3901 tttttctgca ttagtgataa aataagggct taaataacct ctgtcaaatt gcataccttc
     3961 aactacattt aattcatcat tgattgattt tgcctcttca acagtgataa caccatcttt
     4021 gcccactttt tccatagcat cagcgattaa atttccgatt ttttcatcag agttggctga
     4081 aattgtagca acttgtgcaa tttctttttt atcttttact tcgcgagaaa gttttttaag
     4141 ttctgctact atagcttcgc aagctttatc cataccgcgt tttacttcga taggatttgc
     4201 acctgctgtg atatttctta aaccttcttt gaaaattgca tgagctaaaa ccgttgcagt
     4261 agttgttcca tcgcctgctt gatcagctgt tttactcgct acttctctta cgagtgaagc
     4321 acccatattt tcaagactat ctttaagctc tacttcttta gcaacactta cgccatcttt
     4381 agtaatgctt ggagcaccaa agcttttttg gattaaaaca ttgcgtcctc ttggccccat
     4441 agttactttt accgcgtcat taagtttttt aacgccctca taaagtttat ttcttgcttc
     4501 atctgaaaaa ataatttctt ttgccatttt ttatccttat tttataaatt attttaaaat
     4561 tcctaagata tcatctaaat ttaaaactaa atattcatta ttatcaagtt taatttctgt
     4621 tccaccgtat ttagcaaaca cgattttatc accatttgca atatcagtga tttctttact
     4681 tactgctact acttcaccca ttaaaggctt ttctttagca ttatctggta taattatgcc
     4741 tgaggctgtt gttttagttt cttctacgcg tttgactaga acacgctttc ctaaaggttg
     4801 aaaattcatt tttgtccatc cttaaaaata ttgattttag cactctttta tttagagtga
     4861 taatatcata ctataaaaaa tgaattttgt caatacttta aattaaaata tttataaaag
     4921 tttagtttta tagactaaag ttattttata aaataaacta aaggataaaa atgaaaaaga
     4981 ttttttatgg agttatagct tttgttgttg tgcttttgat tgctatttat accatacttt
     5041 tcacaagttt tggtaataat atagtggcaa atatagcgca aaaaaagatc aaagaaagtg
     5101 cgggattaga tgtaaatatc acgcatttta atttacgttt ttcaagcctt gaattgcaag
     5161 caaatatcgc aaatatggca gattttaatc ttcagggagc tttgagtcct tttaagcttg
     5221 gatttgatct tgactatctt atttctttaa agcaaaatta tgctaaaaat ttaggtttaa
     5281 atttaaatca aaacctttct tttggcggta aaattcaagg caaggcaagt gattttactt
     5341 tagatggaag gggttactta ctaggttcaa atgtactttt aaatgtgaga atgtataatt
     5401 acagccctat cgctttaaat ttagatgcaa aaaatcttaa gatagaagaa atacttcatc
     5461 ttttatctta tcctagttat gctaaaggtt ttttaaatgc tcaggcaaaa atttcagcac
     5521 agaatttaaa acctgatgga aatattatca taaaacttga tacaagctat ataaactacg
     5581 aggcgataaa aaaagatttt tctttagact tgcctttaaa ttctaatcct aaagcagaaa
     5641 ttttagccaa tgttaaagaa gataagattt atgctgtaag taaaatttac aatgattatc
     5701 ttaacttaca aacccaaaaa actctttatg atatgagtaa gaatatttta agtactgatt
     5761 ttaatttaaa tattccttct cttgcaaagc ttgaaaaact tacaaaaact agattaaatg
     5821 gtagtttggg cgtgataggc gaaacaagtg ttgtaaataa tgccttatca agtttaaatg
     5881 ctcaagttat cggacttggt ggagaggtaa aggcaagttt gaaacataat aaaatttttg
     5941 cagatattaa tgaagcaagt ttggaaaaat tattagctct tgcaggatat ggagccttag
     6001 tttctggaaa tttaaatgct aaacttttaa atgcggattt ggatttttct aatttcgatc
     6061 ttgaggcaaa aataaacaat gcaaagatta acaccaatga gcttaaaaaa attgctaaaa
     6121 tagaacttcc aaatacaatt tttagtcttg atgctaaagc aaatgcaaaa aatagtaata
     6181 tttcttacaa tgctttactt gcttcaaatt tacttaatat caaaaaactt caaggaactt
     6241 ataatttaaa aaatagtgag ttaaatacag atttaaatgc ttttattgat gatttgtctc
     6301 agtttagtgc tatagcggga caaaaattac aaggtaaggc agatcttaat gcaaaagctc
     6361 atattatagg tactcaaata caaaatttaa atgcaaatgc aaatttggca gatggcgtaa
     6421 tcaaagctga ttcaaatggt aaaaaacttg atttgaacat tgataaactt gatttatcta
     6481 aactttttgt tatagcaggt atgccaaatt atgccagtgg ggttgttaat gcaaaagtta
     6541 atttagataa tatcgatttt aacaacctta atggtaaagc aaatttagag gctaaaggca
     6601 ttttaaatgc tgcaacttta agtaaaattt taaataaaaa ttttccaaac aatacaagtt
     6661 atgatttaaa taccaaaatt aattttaaaa acaatatcgc tcaatttgat tctgttttaa
     6721 attcatcttt agctgatctt acaaaactac aaggaagttt tgatataagt aagatgcttt
     6781 taaattcgga ttttaattta aagataaatg atttttcaaa actaggcttt ttgttagata
     6841 gaaaacttaa aggtaaggca gaatttaatg gaaaggtagg ttttgataag agtttaaatt
     6901 ttgttgtaaa tagtccaaat ttatttgaag gaaaacttca aagcacattt aaagataacc
     6961 ttttgcttgc tgatttaaac ggagtggatt taagtagtct agctcagggt ttggatttta
     7021 tggatattta tcaaggtaag gcggacatga aggcaaatta caatctttta agcgaagaag
     7081 gcgaggttaa tttggatatg aaagagggta aattaaaacc aaatcttatt accaatgctt
     7141 taaaaatttt aacattaaaa gatattacag atgatgttta tcgtactgct aatgctaaag
     7201 ctttgattaa aaaagaaaat atcaagcttg atcttaatat gcaagcagat cgttcttata
     7261 ttttagtaca atcaggagct ttaaattcta aaagtggagc tttaaatttg ccttttgata
     7321 ttaaactcga tagagctaat tttaaaggaa gtattacagg aactacagaa aatcctaaag
     7381 taaatttaaa tgcaggaagt gttttaaatt ctattaaaaa tgtagtaggt ggcggcgtga
     7441 gtgatggtgc taaaaataca ggcaataaag tggataaagc ggtaaataaa ttattaaata
     7501 agattttcta aggtaaaaaa tgtttaatgg actcataaga gaaattgcca aagttcaatc
     7561 ttatcaaaac aatactttaa gtttaacagc taagcatcgt ccaaatcttg gcgatagtat
     7621 agctgtaaat ggagcttgtt tgagtgtgac aaaactttat gagggaggtt ttgaagtgga
     7681 actttctcgc gaaagtcgca ctcatatagc tatagagaat ttaaaagata aagttcatat
     7741 agaacctgct ttaagatatg gcgatagaat cgatggacat cttatgcaag ggcatattga
     7801 ttttattggt atacttgaaa agattcaaaa ggatgaaaat ggagtggatt ttcatataac
     7861 tttacctaaa gaagctatga aatttatggc agaaaaagga agtatagctg ttgatggggt
     7921 aagccttact atcaatgaaa ttttaaaaaa tggtattagg cttactatta ttcctattac
     7981 ttttaaagaa acgcttttta aggactatca agtaggtaga aaaataaata tagaaagcga
     8041 tttgcttgct cgttatattt atgcacaatt gcaaggtaaa aacaaaggat tatcatggga
     8101 agaagtggaa agaatttctt atctttatta gaaaatgata aagtcggtat tttttgtgct
     8161 tttgataagg attataatgt ttttagggct aaaattcata atgagaattt attttctcat
     8221 ttaggtttta aagatattga aaaatgtgtt tttatggatc aaattcactc tcataaagtt
     8281 atcatttatg atgaaaattt aaaaaatctc agttgtgatg gacttataag taaagaaaaa
     8341 aatactgctc tttgtgtctt aagtgcggat tgtctgcctt tgatcttata tcatgaaagt
     8401 ggcattatag cagctttgca ttcaggtaga aaaggaagct ttgaaaatat cctaaaagaa
     8461 tgcgttgatc aaattactat gcaaaattca catttagata agaataaatt tcatcttttt
     8521 attttacctg gaatttgtgc taaaaattat gaaatagatg gagaaatttt agaatttgct
     8581 aaaaaagaat ttaaagaatt tgttcaagat aataaacttg atttaaaagc cttggtaaaa
     8641 tttcaagctc aaaatttagg cattgaaaat attaaagatt gtggaatttg tagttttgat
     8701 gatgagagtt ttttttctta tcgtcgcgat aaaacgccta agcgttttgt gagcgtggtt
     8761 tatttaaagg attaaaatgt atgaaagaaa agatttaaga gtgttaaaaa tcattcaaaa
     8821 agctagagaa tttggcgatg gggatttgtt aaatgaagct ttggtgaaac aattaattga
     8881 tgcagatttt tgtgaaatta gtgaaaaaga aaaagaagag cttgcaactc ttctaaattc
     8941 tttaatcaat gcaaaagata aagcgttgtt gagtaattaa aattctatat agttttcaaa
     9001 atcttcttct tttgggggat taggttgatt cgaggctagg gcttctttaa caatctgctc
     9061 gtatccagct atgatatgtt taaaattctc ttttgctttt ccactaagtt ctgatttggc
     9121 gatttttaca acagatgcag gatttatagc tttattattt aaatatactc caaaatgcaa
     9181 atgaggccct gtgctcatac ctgttgaacc aacatatgca attacttgtc cttgatttac
     9241 cttttgtccg tttttaattt ttgcaaaacg actaagatga gcatataaag tcatataacc
     9301 tgagtcatgc ttgatttgaa ttacatttcc ataaccacct tttgtgccta taaaggttac
     9361 tactcctttg ccagcacttt tcacaggagt tccagtaggt gcagcatagt ctataccaag
     9421 atgggcacga tagcgtttta atataggatg atatcttgct gttgtaaaag gagaagaaat
     9481 tctagtgtaa ttcacaggtt ttgtaagtaa aaaagattct aattctttgc catcacgatc
     9541 atagaatata tcattataag aaaagacttc tctagcgctt ttattgattt ctaccattgc
     9601 catttttata tttatatcac cccaaagttt acccatgcgt cttttttgtt cataatatag
     9661 ggttacttca tcaccttttt ggatattgcg aaaatttata cttcctcgaa aagcacgaac
     9721 catagcacga gctaaagtac tgctaccact ttcttcatag acatcttgat aagcagagct
     9781 tttaatggtt aaatgtaaaa ttctatcttc tttttgataa gatacaggag taaaagcaag
     9841 agtgtattgt ctatctttat ctttatagat atgaatttgt aaatcatcac taattggaat
     9901 taaaacttgt tctatgttgt tgttttcatc ttttaaaact tgatatttta ttttataggc
     9961 tatatcagaa gcaagttctt gatcttctct atcaagtcca taataaagcg acataggtat
    10021 ggaatttctt tgtaagaatt taagcaaggt atctccatta tcccaagtta gctcttcaac
    10081 acttaaagct gcaaaacttt gaacaacaaa aataaataaa agcaataatt ttttcatgag
    10141 ataaccttaa tttttaaaag aattttgaaa tttgaaagct atattttact ttatttttct
    10201 tacaattgct taacaaaaaa ggattataat tctataaatt tttatttaag gagcaaattt
    10261 gtttaaaact atagtgtgtt ttttagcttt aaaccttagc ctctttgcgg ttggatttga
    10321 tttaaaacct ataaaaagtg aacttgtaaa agttgatgat atttatggtt atattaaaga
    10381 tagtgatgat ataaaacttt attcaagtgg cgtagtagtg caacatttta gcaattcgca
    10441 aagtatcatc gctagagcaa gtgttataga taaaaaaaat ggtttggcaa aattagaatt
    10501 tagtgttttt tcagctctta agcaagatgc tttgccttta ccaaatgttt tacctaaagt
    10561 aggtgatgag gttgttttaa attttcttta tgatagagga ttggtaattg ctcctgatga
    10621 acaaacttat aatgaacttg ttagagaatt tccgcagata tattttaccc atattgatat
    10681 ttttggagca caattaatta gaacggctac tctttctcct aagcgttcag atcttaggca
    10741 attttgtgat gataatgcgg ttggtatttt ggttgtagct ttggaaaatc aagcagaagt
    10801 tgtggattgt caagatttta ataagcttta tgaagtgcct ataagcaaac caattagcgt
    10861 tcaggttcct ttttattctc gtataggtgg atataaaagt aatttttttg attttaactc
    10921 tcaagaaata ggaaattatt atagatatta tgatgctttg attaatcttc ctaaggtgca
    10981 ataaacatga aaaaagaatt tgaacaatat tttaaacgat ttttaggaga agaaaacgct
    11041 tattttgatg aaattcacaa aagagcttat agctatgatg cgacaaaaaa acattattta
    11101 cccgatgggg ttctttttcc aagaaatgaa gaagatattg ctcaaatttt aaaattttgc
    11161 aatgaaaata atatcatagt catacctcga ggctcaggat ctggttttac aggaggagct
    11221 ttagctgtta atggcggggt ggtgcttgct tttgaaaagc atatgaataa aattttagaa
    11281 attgatcttg aaaatttagt ggctgttgtg caacctgggg ttattaatat acatttacaa
    11341 aaagaagtgg ctaaatatgg acttttttac ccacctgacc ctgctagcat ggagtattca
    11401 agcttagggg gtaatgtaag cgaaaatgct gggggaatga gagctgcaaa atatggcatt
    11461 acaaaagatt atgtgatggc tttaagggct gttttgccta gcggagaaat cattcgtgca
    11521 gggaaacgca ctattaaaga tgtagcaggt tataatttgg caggaatttt aatcgctagt
    11581 gaaggttctt tggcagtttt aagtgagctt actttaaaat taataccttt gcctaaattt
    11641 aaaaaaactg cttttgctat ttttccaagt gtaaaaagtg ctatgaatgc ggtttacaaa
    11701 agtcttgcta gcggtgtaag tcctgtatct atggaatttt tagacaatct tagcattaga
    11761 gcggttgaga gcaaatttaa taaaggtttg cctatagaag ctggagctat tttgattgct
    11821 gatgtggatg gtaatgttaa agaggctatt gatgaggatt taagaaattt agaatattat
    11881 tttttagaag ctggcgctag cgaatttaaa atagcaaaag atgaacaaga aaccgcagat
    11941 atttggtttg ctagaagaaa ttgttctcaa agcattgcca tgtatggaac tttaaaactt
    12001 aatgaagata ttacagttcc gcgttctaaa ctacctactt tgcttgaagg tatagatgag
    12061 atttctaaaa aatatggttt taaaattcct tgttttggac atacagggga tggaaatgtg
    12121 catactaatg ttatggttcc tgataaaaat gataaagagc aggtgaaaaa aggctatgaa
    12181 gctgtggaag agatttttaa attaacagtg aaacttggag gaactttaag cggagagcat
    12241 ggtatcggac tctctaaggc accttttatg aatttagctt tttctgaagc cgaaatgaat
    12301 ttaatgagaa atattaaaaa agcttttgat ccaaataata tactaaatcc ttttaaaatg
    12361 ggactttaga aggtgaaaaa tttttttact attttactaa atttgcgtga taaggaaatt
    12421 ttaaattatg cagcagcgct tagtttttat actgtattat ctttaatacc tattttattt
    12481 gtatgttttt ctgtttttac gcaaatttcc agttttaaag cttattatga aaaagcaaag
    12541 caagtaattt ttgctttttt aataccaacg caacaagatg ttgttgctac ctacatcgat
    12601 acttttttaa aaaatagtgt aaatttgggt attgtaggtc ttattgctat ggcatttact
    12661 tctttagctt ttttttcagg ctatgatttt gtaatcaatc gcattactaa aaatgaacct
    12721 aaaggacttt ggcaaagtat tagttcttat tggactcttt taactcttgt tcctttgggg
    12781 cttgggctta gtttttatat ttcaggtttt atccaacaaa ctttagatga ttataaaata
    12841 gggtttaatt tttttgaaat tttacccttt gtaattattt ggggtttatt ttttatatct
    12901 tattcaagtt ctgttcataa gggaactctt aaaagtttag ctttagtatc ttttggagcg
    12961 ggtactattt ggtatatagg aaaaaattta tttgtatatt acgtggtata taataaaaca
    13021 tacgctagcg tttatggatc tttttctact attttattct tttttatttg gatttatatt
    13081 tcttggatta tttatctttt tgggcttaaa ctctattatt ttctaaatca caatcataat
    13141 gaagggaata aaattcgcaa aaatacaaag aaaagctaga tatttaaatc gcacagagat
    13201 taaagaagca ataagataac ttataaaaat ccaaaatggg atatggatat tagttccata
    13261 aattttaaat ttaaaaaatt catctaagat aaaattgagc aaatctccat agtttataag
    13321 atgcaaaaat aatactaaag gataaaatat tacaaaaatt ccactcaaaa taatacctaa
    13381 aatttgttgg tagcttataa gtggaaaaaa ataaagcaca ggtaaaacca tagcaaaaaa
    13441 agtccaaata ttaagcaaaa taatatttat aagattatta aatttatttg caaaatgatg
    13501 catatataaa aaaatataaa aaacacctaa aatagaaaat aaaaatccaa tactaaataa
    13561 aagtctaggg taaagagaaa tgcacaataa aatactacaa aaaagcgtaa cgaaattaat
    13621 gatttttata tttttacaca atagataaaa aacccaaaaa gccataatca aggagcgcac
    13681 aaaagaaggg acaaatccta ttaaacaagc ataagctaaa agtagtgcaa aaattaaaat
    13741 acttaaatct aaacgtaaat ttctataagg aaaatatctt ttttggaaaa aactataaat
    13801 tggagctaaa ataaagaaaa ttaaactaaa aagtaagcct atgtgataac cgctaattgc
    13861 tataaggtgt gctataccgt agtaatttac atcgtttcta agctctaaag atatgggcag
    13921 tgcaaaaaat aaagcaccat aaaattcttt aatcttttca tttgt
//
LOCUS       DARGED010000033        13636 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.033, whole genome shotgun sequence.
ACCESSION   DARGED010000033 DARGED010000000
VERSION     DARGED010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13636
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.033"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(3..410)
                     /locus_tag="SFZ84_000779"
     CDS             complement(3..410)
                     /locus_tag="SFZ84_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202917.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(410..835)
                     /locus_tag="SFZ84_000780"
     CDS             complement(410..835)
                     /locus_tag="SFZ84_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8202918.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(835..1416)
                     /locus_tag="SFZ84_000781"
     CDS             complement(835..1416)
                     /locus_tag="SFZ84_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG8202919.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(1413..2156)
                     /locus_tag="SFZ84_000782"
     CDS             complement(1413..2156)
                     /locus_tag="SFZ84_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG8202920.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(2159..3121)
                     /gene="moaA"
                     /locus_tag="SFZ84_000783"
     CDS             complement(2159..3121)
                     /gene="moaA"
                     /locus_tag="SFZ84_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG8202921.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(3134..3649)
                     /locus_tag="SFZ84_000784"
     CDS             complement(3134..3649)
                     /locus_tag="SFZ84_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202922.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(3646..4143)
                     /locus_tag="SFZ84_000785"
     CDS             complement(3646..4143)
                     /locus_tag="SFZ84_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202923.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVVESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(4134..5018)
                     /locus_tag="SFZ84_000786"
     CDS             complement(4134..5018)
                     /locus_tag="SFZ84_000786"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG8202924.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLVNDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            5089..5958
                     /gene="miaA"
                     /locus_tag="SFZ84_000787"
     CDS             5089..5958
                     /gene="miaA"
                     /locus_tag="SFZ84_000787"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG8202925.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(5944..6507)
                     /locus_tag="SFZ84_000788"
     CDS             complement(5944..6507)
                     /locus_tag="SFZ84_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEG8202926.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
     gene            6655..6729
                     /locus_tag="SFZ84_000789"
     tRNA            6655..6729
                     /locus_tag="SFZ84_000789"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6688..6690,aa:Glu,seq:ttc)
     gene            complement(6865..7047)
                     /locus_tag="SFZ84_000790"
     CDS             complement(6865..7047)
                     /locus_tag="SFZ84_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202927.1"
                     /translation="MKKVVLISALLGAFAANVFAADTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPTQ"
     gene            7315..7977
                     /gene="sodB"
                     /locus_tag="SFZ84_000791"
     CDS             7315..7977
                     /gene="sodB"
                     /locus_tag="SFZ84_000791"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG8202928.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNEGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            8046..8736
                     /locus_tag="SFZ84_000792"
                     /pseudo
     CDS             8046..8736
                     /locus_tag="SFZ84_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(8749..9954)
                     /locus_tag="SFZ84_000793"
     CDS             complement(8749..9954)
                     /locus_tag="SFZ84_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG8202929.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTRAQILLNVALPYQDLSLMDACIKAGVD
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(9990..10898)
                     /locus_tag="SFZ84_000794"
     CDS             complement(9990..10898)
                     /locus_tag="SFZ84_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202930.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            complement(10882..12498)
                     /locus_tag="SFZ84_000795"
     CDS             complement(10882..12498)
                     /locus_tag="SFZ84_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8202931.1"
                     /translation="MYKTLQYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     TLFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALVTALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKIFHMSLLGNSLFVLIFAYIIRFLASAIYSLEGGYNKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            complement(12498..13502)
                     /locus_tag="SFZ84_000796"
     CDS             complement(12498..13502)
                     /locus_tag="SFZ84_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8202932.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            complement(13499..13630)
                     /locus_tag="SFZ84_000797"
     CDS             complement(13499..13630)
                     /locus_tag="SFZ84_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8202933.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
BASE COUNT         4926 a         2117 c         1749 g         4844 t
ORIGIN      
        1 ttttatagat atctttctat taaaaaaggc aaaaacaata aaaaaatttc aaaaggtaaa
       61 atcaaacaac taatccatct aaaagtggca tattttctaa atcttcttgc ttttttaaaa
      121 caaacaaagt gaaaaattgc taaggcaaaa attaagatcc aagaaaaaat cattacccag
      181 atattgacat tcatttgaaa ttgtttcatt gctgataaca aacaacctgt aaaaataatc
      241 aaagctaaaa ataaataata aattggtaaa aataatcgta ttctgcgaat aaaaatgaat
      301 tcggttttaa aatttccttg tgttagtata agataaaaaa gcattaaaaa accgctcgca
      361 taaagactat aaagatgtaa agctaaaaag aattcgtaac tttgatccat tattttcctt
      421 tgtttataaa atcagctaaa ttttgaattt gttcatcact taaaaaacta tggtttttat
      481 cttttatcgt ttttattttt tgtataaaaa ttttattgct caaggtttta atggccgtgc
      541 tgtttttagg ttttaattcc cctttttctc catgacaagt ggcgcatttt tgtttatata
      601 aagagttgat aatactagga ttgacttcat gttcatcatc tgaactttgt gcttcatcat
      661 ctacaggtaa aggcaggttg gagtcactta attctgtttt ttcatcgttt tgttctattt
      721 ggactacttc ttgatctgta ttttgagtct tggaaatatt tttttcatca ttagaacagg
      781 cagataaaac taataaaaaa aaacttaagg caattaaaat tttagctttt tgcattaaat
      841 ctcctttgga tttataaaaa tttcttcatt ttttaatttg ttataaaaat ctatatcatt
      901 ccattctgct ttaatgccat tggaaaattc tatgtcttga agtgaaattt ttggcattag
      961 ctcactatag gcatcttctc taaaaccttg tgcataacct gttcttgttt catgaacaat
     1021 gatgctttgt aaagtcactc cttgttctcc atttaccatt tttgtttgtt ttaataaagc
     1081 atctataagt atgaaaaata cacgacaaaa attttcagca cttacattaa caggcaggca
     1141 aatccaacga cttgaatatt ttttcatttc ttctaaatat tttgcgtcat catatttaaa
     1201 aagagtgata gcatgatcaa aactatcaat aatttggcgt atataggttt ttaaaagtcc
     1261 aaaatcatag accattccag cattatctaa atatttgctt tcaagtaaaa cttcaacttt
     1321 gtaagaatgt ccatgaatgc tacttttgca acgcttagaa gaacaaaatc taacaatgtg
     1381 tgcgttttca aattcaaata attttcttat aatcatacac cctctttatc gttccaaaga
     1441 cgaatatgaa ttctatcaga ataattataa ccattcttaa tacaaaattc agcaattttt
     1501 tgagcatttt ttttaaggtt ttgctcattt tcacccatag gcatacaaaa aatttgattc
     1561 ggagcttctt ttagaatttc attgatttct aaaaatgaat tatcaagggt attggcatct
     1621 aaaacaaatt tataaaaact atcttttgcg taatttttaa atgcttttaa agctttaaaa
     1681 tttaatcgtt tatctttttt tatcccacta ttttggagtt taacgcttaa agcaaaaata
     1741 cattctttgt aaaaaggata tctatcaaaa tcaatttcta tgcttccatt gctttcaaag
     1801 tgtatttcga atttattttt taataacatt tggataaatt ctataaattc aggattttca
     1861 taatggatta atggctctcc acctgtgata acaactatag gatcaaagtc tttttttaat
     1921 tttatcactc tttttaaaag ttcattagca tttaaagttt cataactttc tttaaaatct
     1981 tttgtgaaaa cagctcttat cgtgtcacat ccaatgagag ttttatcgtt ttttgatatt
     2041 tttacattaa aacctaaaca gttgaaattg caaccagcaa aacgcataaa aatagctaat
     2101 tttccattat atttgccttc tccttgaatg cttaagaaac tttcaacaag ttgcaaaatt
     2161 aacctccagt ttgataaaaa gcacgagatg aggtttcatt atcaacaaca ctccatttat
     2221 ttttttctgg tttatttctt aatacttctt gtaatatttc tacagcggct ttaatatcac
     2281 cttttcgaac cgcttctttt atgcttaatg cttcatcaaa ataaaggcaa ggtattaaca
     2341 agccttcagc acttaagcgt atgcgattgc aagaatcgca aaattcatgg ctatgaggat
     2401 ctataattcc aaattcataa tcatctgcct tgtaaatact cacaggtgct ttttcatctt
     2461 tttttataag ttgaatttga tatttttgac tcaaaatttg tataatttca tctcttttta
     2521 atccttgtaa tttaccataa gcatgagtat tttccataaa ttctataaag cgaatttgag
     2581 ctttttttga ttttgcaaat tccaaaagag atatcagttc atcatcgttt aaatttttaa
     2641 gagctacagt attaagtttt actttcaaat ctagatttaa agcttcatca attccagata
     2701 aaacactatc taatacatct ttttgcgcaa gagtttttgc ttttttgtga tctagggtat
     2761 caagtgaaat attaagtcgt ttaagtccag cattttttag gtctttagca aagtctttta
     2821 gtaaaaatcc atttgtagtt atagcaaggt caatatcgct tttataatcg ctaatcattt
     2881 ttataaaaat acttaaatct tttcttaata aaggttctcc acctgttata cggatttttt
     2941 caattccttc gtctatagct gctttaacaa ataaaaaaag ttcttcgaag cttaataaat
     3001 tttcttttgg ctgataatcg aaaggaattt ttggcatgca ataaaggcag cgaaagttac
     3061 atctttgtgt aactgaaatt ctaagataat ttatctttct accgaattga tctataagca
     3121 tttattttcc attctatttt attaatttct taaattttaa gacaagttct acatttccag
     3181 tgccaatgcg taaatcttta gcgatttgtt ctatgctttt tccttctttg aaaagatttt
     3241 ctattttttg ttcttctgta tcgtaatttg gtgtaagttt agccatgctt tgtgcttttt
     3301 gttccaaatt taaaagacga ttttgttgtt cattttgaaa atcttctatg atatgttcca
     3361 tagtttttag tgttcttaaa acaggagtga tttttgaact gatttgttta tcaagttcaa
     3421 tcataatttc ttcttttaaa agagaggttt tatagtcttc atcctcttcg ctatcatctt
     3481 taactcctaa ttctttacga aaataatgaa gttctttggt aatatcttct atcacatttt
     3541 gaagttttgc tatttttgca ttattttctc tttctttgat attcatatag gctagcattg
     3601 caattaaaag cacaattata aaaactaaat aaagtacatc atcactcatt cttggccttt
     3661 cttatttctt atcatatttc tttgaatttc aacaacaaaa gcatcaaaag ccattttgtc
     3721 ttcaggctta attttgataa tttttgccaa tgtttgactt tgagctttga taaaaatagc
     3781 tattttttga ttatttaaat caaatcttaa ataatattct ttatcttctt ctaaaatagt
     3841 atccaaaaaa tttagatatt caaaattcaa agattctact accccttttt gcttaagtgg
     3901 tataagttct ttatttttat ctaaagaatt ttcaagcctt aaaatatctt cttttagact
     3961 taaaagaaga tcaaaaataa ttttttcacc ctcgtcaaaa tcaatgcgta aagcaagttt
     4021 tttccatttt aaaatttgag aaattgctcc aagttttagg tattctccaa gaaaacggtt
     4081 attttctatt tcacaacatt ctaaatgagc ttcaaatcct gctttaaaaa gtgctaattc
     4141 cataataaat caatccaaat aaaaataaaa aagataatac ttaaataacc atttagagta
     4201 aaaaatgctc tatcaatatg agcaaaattc ttgtgaacaa ttttatgttc caaggctaaa
     4261 ataataccgc ttataattac cccaataagt gctatttttc caagtgctac accccaaact
     4321 tcccacacaa aaagaagcca aaataatacc gctaaaatat ggcaaaaagc tgatataaat
     4381 aaagtagcct ttgaaccaaa tttagcagga atagagtgaa gtcctatttt tttatcatac
     4441 tccatatctt gtaaagaata aagcagatca aacccagctg tccaaaaagt tacacctaaa
     4501 cataaaataa cgctataaat gtgaatttca cccataatta taacacttcc tgcaataggc
     4561 gcaagtccta aacaaaatcc taaaactaaa tgtgctaaag aactaaagcg cttaaaagct
     4621 gaataaatag ccaataccaa aagcacagga aaagacaaat aaaaggccaa ggtattaata
     4681 aaataagaac atgatataaa aataagtgca ttaataatga taaaaatcca tacgcttttt
     4741 ctacctattt ttccactgac attagggcga tttgcacaac gaggattatc cttatctata
     4801 tcttcatcca ttaaacgatt tgtagccatg gcaaaatttc ttgcacttac cgcacaaata
     4861 atgcctaaaa tcaacgcctt aaaaccaaac caagcagtgt catttacaag ttttgatgct
     4921 acaatcatag aggaaaataa aaaaggcaaa gcaaaaatag aatgcttaaa tactacaagt
     4981 tctaaaatat ctttaaattt tatccagaat gtgttcattt ttctacttta aaatattttt
     5041 tgctatgatt ttactaaaat ttttataaat tttaggataa atattaaaat gttttttgaa
     5101 atagcattaa taggaacaac tgcgagtgga aaaacataca tagccaatac tttagcaaga
     5161 gaatttaatg ctgttgtttt aagtcttgat agtctttgtg tttataaaga gattaatata
     5221 gcaagtgcca agccttcaca agatgatctt gcgagtataa aatactttgg ggtaaattta
     5281 ttgagcgtga atgaacattt taatgttgag ttattcataa gagaatatca aaaagcaaaa
     5341 gaatttgctt tagctagaaa tttacctcta attatagtag gtggaactgg attttattta
     5401 aaaactatga tagatggttt aagtgaaaaa accttagagt caaagagttc tttaaataac
     5461 gatgaaattt atgctctttt attaaatatt gatccaaact ataaaataga aaaaaatgat
     5521 acttatagat taaaaaaatg gctgggtatt tatgaacaaa caagagaaat tcctagtgaa
     5581 tttttaaaaa gaacacaaaa aactggggtg cttaaagata tagaaattta tgagcttgcg
     5641 tgggataaag aaattttaaa aaaacgtatt aaaactagaa caaaagaaat gcttgataat
     5701 ggacttttag atgaagcaaa aattcttttt tctaaatttg atcataaact taaagcatta
     5761 aattctatag gtttgaaaga gtgtaaagaa tatttagatg gagaaatttc ctttaaagag
     5821 cttgaaaatt taatcacgat acatactaca caacttgcca aaagacaaag aacttttaat
     5881 aaaaaatttc aaagtaaagc cttggaattt gataaagctt tagctacttt aagaatgaaa
     5941 ttttcaatcg aaaaataaat gttctattag aatttttact cctagtataa ttaaaaccaa
     6001 tccgcctaaa agttcagctt tatttttaag ataaattcca aatttattcc ctatttttag
     6061 agcaatgata cataaaatga aggtgataat acctattaaa aatatagcta ataataaatt
     6121 tacatttaaa aatgcaaaac tcacaccaac tgctagtgca tcgatactcg tagcaattgc
     6181 taaagctagc atggttttaa agccaaattg attggcatta ctatcgcaat tttcattttc
     6241 caatgactct ttgatcattt ttaatcctat taaagaaagt aaaataaaag ctatccaatg
     6301 atcaatactc gcaataaaag atgcaaaagt tatgcctata aaataaccaa tagttggcat
     6361 caaagcttga aatccaccaa aataaattcc aacaataaga taatgtttta aatgtagttt
     6421 tttaacacta aaacctttac atagtgatac agcaaaagca tccattccta aagcacagga
     6481 taaaaaaata agactataaa aatccataat aaatcctaaa attttataaa aaattgaaga
     6541 tgaaattata attaaacaaa gataaaaatc acataatttt gatatattta attaaatttt
     6601 aagaaataaa tatatataat tcaatttcat ttttattttt tactccttaa aagtggccca
     6661 ttcgtctagc ggttaggaca tcgccctttc acggcggtaa cacgagttcg agtctcgtat
     6721 gggtcaccac tttttaattt ttcttttaaa ataacaattt tttcattttt tctattgaaa
     6781 tttaataaat attaataatt tattttgtag aatacgaata gcttttgata taagtctatt
     6841 atagacttat atcaaggctg ggcattattg agttggtgtt tgctcttttg tttttttgtg
     6901 agttttagct tcatgttttt tatcagcttt agcttttgaa tgatgagctt ttgtatgtgt
     6961 ttgatttaca tcgcttggag tatcagctgc aaaaacatta gctgcgaaag cacctagtaa
     7021 tgctgagatt agtacaactt ttttcatatt ttcctcctta tgaataattt ttagttgcaa
     7081 attaattgta attattaaaa atcaacaaat agatattttt tgtaaaaata tttcaaaaaa
     7141 atataatttt ttatatatat ttaaattatt attaaaatat attataaatg tatcttattt
     7201 tatttaggtt aaataaatag aaattttacc cactaagctt ttaagatatt tttactcttt
     7261 ttaatattat tatggtaata ttttcaatat caaactaaaa ataaaggaga aattatgttt
     7321 gaattaagaa aattacctta tgataccaat gcttttggtg attttttgag tgctgaaact
     7381 tttagctatc atcatggaaa acatcacaat acttatgtta caaatctaaa taatcttatt
     7441 aaagatactg aatttgcagg taaagatctt gtaagtatta tcaaaacttc aaatgagggt
     7501 gtatttaata acgcagctca agtttataat catgattttt attttgattg cattaagcca
     7561 agtacaggct gtggctgtgg cggttcatgt caaagtatag atgctaattt acaagcggca
     7621 ctagaaaaag aatttggatc tttagaaaat ttcaaagctg aattcatcaa aggtgctaca
     7681 ggagtttttg gttcaggatg gttttggtta gtttataata ctaaaaatca aaaactagaa
     7741 tttgtaggta cttcaaacgc agctacacca attactgaag ataaagttcc tttacttgtt
     7801 gtagatgttt gggaacatgc ttattatgta gatcatcgta atgcacgccc tgcttattta
     7861 gaaaaattct atgctcatat taactgggaa tttgttgcaa aagcttacga atgggcttta
     7921 aaagaaggca tgggatcagt tagcttttat gcaaatgaac ttcaccctgt aaaataactt
     7981 taatcctttt tgtgctagaa tggattttga cattaagtca acattctaca caaaaagggg
     8041 caaaaatgga taattcttta tctgcatata ctcaaaaata tgacaaagaa ggttatggac
     8101 ttcaatatcc tgatggtcat gttataagat tttacgagag aatcttaaaa tacaaactaa
     8161 gcaaaacaag tggaaaatta cttgattttg gttgtggaaa tggagtgcat tctaagtatt
     8221 ttaaaaatat aaccgggggg gggtatagag ccttatggca ttgatatagt tcctagttta
     8281 aaaaaagttt gggaaaaaga tccttgctta gattctaaaa attttcacat catatctcct
     8341 aattctagct ttaaaaaact cttcaataca aaaatggatt ttatatttgc aaatcaaagc
     8401 ttatattatc ttacaaaaca agcttttaaa gaagctgtgc aagaatttta tgaactatgc
     8461 aatgaaggag ctattatatt tgcaaccatg atgagcgata aaggctatag tatgtatgaa
     8521 agaggaaaac ttatggataa tagcttgcgt gaagtaaaag gatgtccaag tggtagattg
     8581 agtggttctt catatatacg ctttgctaaa gacatagaag aattaaaaga agattttaaa
     8641 ccttttaaac ctttattttg gggagattat gaattaatta atctgtataa ttttgaaggc
     8701 agtgtggagc actttattta tataggacaa aagtaagtgc tctagcactt actctcctaa
     8761 gcttggagtc atttcgataa tcttccaagg aagtccttga gaattcagct cttccataaa
     8821 aggcttagcg tcaaattctt ccatattaaa cacgcctttt ccttgccaaa ttcctttagc
     8881 gattaatttc gtacctatca tagcaggaac acctgtagta tagctcacag cttgcgcgcc
     8941 agtttctttg taacattctt catgattgca aacattataa atataaactt gtttgtcttt
     9001 tccatctttt ttaccacgaa tcacacaacc tatattggta taacctttag tgcgtggtcc
     9061 taaacttgca ggatcaggaa gcaaggtttt taaaaattct ataggaatga tttctttacc
     9121 ttggtgtatc acaggtttaa tccctagcat tccaacattt tcaagacatt tcatgtgagt
     9181 taaataactt tgtccaaaag tcataaaaaa gcgtattctt tttaaacctt tgatattttt
     9241 taccaagctt tcaagttctt catgataaag caaatagcta tctttcactc ctacttctgg
     9301 ataatcccac tccattttta tttccatagg ctgcgtttct atccacttgc cattttccca
     9361 ataacgccct ttagcagaaa cctcacgcag attgatttca gggttaaaat tcgtcgcaaa
     9421 agcatagcca tgatcacctg cattgcaatc taaaatatct atataagaaa tttcatcaaa
     9481 taaattttgc tgtgcataag cacaaaaaac attagttaca ccaggatcaa atccacttcc
     9541 taaaagtcct aaaattcctg cttgtttaaa cttatcattt ctcgcccatt gctctttgta
     9601 ttcaaattta gctaaatcag gatgttcata atttgccgta tctatataat caacccctgc
     9661 ttttatacaa gcatccatta aactcaaatc ttgataaggc aaagcaacat tgagtaaaat
     9721 ttgcgctctt gttttcttga taagttctac aaccgcattg ctatcatcag catcaatttg
     9781 cgctgtttca atttgaaccc ctaaacgctc tttgataaaa gtagcgattt catcacattt
     9841 gctttttgtt ctactagcta aagtgatttt gctaaaagta tcagaattca ttgcgcattt
     9901 tacagtagcc acacgactta ctccacctgc gcctatgatt aaaagatttt tcatgaaatt
     9961 tgtccttaaa agatttttag gaattttaac taaaaattga taatatcaaa atttattttt
    10021 tcttctaagt tataatttga gcttaataac ataaaaaatt ctatattttt atatcttaac
    10081 ttaagtctat aaaaagcccc taaaaattct ttttgtaaaa ttttagcctc aaagcgattt
    10141 cctattttaa gttctgcata accaaaaata taattttttg aagctatcca agcaaaaaat
    10201 tcatcttcta aatcaagttt ttcttctatg atatttaaat caggtaaaat ttgcgcactt
    10261 ttaaaatcgg gcttaaaata aagctcttta ggatttgcat gagctaaaat ttttcctttt
    10321 tctaaaaaag cgatttgatc agacatacaa taagcatctt caatatcatg agttaccata
    10381 atagccgtaa tgccttgatt ttctatcatt tttttcaatt ctcttcttaa atcctgtttt
    10441 aaattttgat ccaaattaga aaaaggttca tctaaaagca aaagctgaca tcctcttgct
    10501 atagctctag caaaagccac tctttgcgct tgccctcctg aaatttcatc gattttttta
    10561 tatcttaaat cttcaatttc aaaagtttta agcaaatgat ttaaaatttg atttttatct
    10621 tttttatcgt aaagtgcaaa aagtatgttt ttctcaacat ttaaatgagg aaataaagca
    10681 taattttgaa acatcaaagc cacttcacct ttgcaagaaa acaaatcata agaactagct
    10741 tgttcaagct tagcaataat ccttaaaagc gtgctttttc cacttccact acctcctaaa
    10801 atgcttaaaa attctccttc tttgacatga agattgatat tttctaaagc ttgtattttt
    10861 tcaaaatttt tagataaatt tttaatttct aacatcatct ttccttgtga ttttatccat
    10921 ccaaacaaca accattaaag aaagaaaaac gataaacaag gaaggcaaag ctgcatcata
    10981 aattctttca tcacttgcaa accaaaaagc tttaacactt aaagtttcaa agccaaaagg
    11041 cgctaaaatt ctacttaaag gaagttcttt aatcgtatca ataaaaacaa taataaaagc
    11101 caaaaataaa aaatgtttca ttaaaggtgt gtgaatttta aaaaataaaa taaaataact
    11161 cgctcttaaa tttaaacttg cctcatcaat atttagatga attttattat atcctccttc
    11221 taaagaataa attgcactcg ctaaaaaacg aattatataa gcaaaaataa gaacaaataa
    11281 agaatttccc aataaactca tgtgaaaaat tttatccaaa aatacaaaaa gcactataat
    11341 gctaatccct aaagcagcag caggtataga ataacccaaa gaacttattt ttaaaataaa
    11401 taaattaaaa aaatgatttt taactatcct agaactaaac atcaaaaaat aagctaaaaa
    11461 agtggtaatt aaagcagtga ctaaagctaa gattatagtt tgaaaactga taatataaaa
    11521 ttgtgattca aaaagcttat gatcttttaa cccccaataa actagccaaa taaaaggtaa
    11581 aataaaacct acaaaagcaa tcataaaaca ataaatacag gatagaattt gtttaatagg
    11641 atttaatttt ctttttttga taaaaagagt taaattttga ttaaaactat aatgatgttt
    11701 atttttataa taataatcca catacataat caaaaataca aaaagcatta aaatacccga
    11761 taaaacacta gaagaataag aatcattcaa atcataccag agtttaaaaa ttccagccga
    11821 aaaagtatcc actcccaaat aagcacttgc gccataatca cttaaagttt ccattaaaac
    11881 caataaagct ccagaaaaaa tggcaggcct tgcgctcaaa agtgccacgc gtgtaaaaat
    11941 tctaaattca gaatatttca tgattttagc tacttcataa gcctctttgg cttcactttt
    12001 aaaagctgtt ttagcaaata aataaatata aggatataaa gaaatagcca aaacaaaaat
    12061 aacaccataa tgattgaaaa aatccatcct aaagccaaaa ttttcatgaa aaaatccttg
    12121 aaaatccata attccaacat aaacaaaggc taaaatataa gcaggtatgg ccaagggtaa
    12181 aatgagtaat ttttctaaaa ttttacagaa ataaaaatca taatttgcga tcaaataagc
    12241 agaacttaca cccaaaatca agcttaaaca caatactccc acgctaatta taaaagtatc
    12301 tttgatgaat tttaaaaata aataatcaaa aaaatgactc aaattttctt taatagatga
    12361 aaattgggtt aaattacttg tattaaaatt ttgaaataaa atataaaaaa gttcagcaaa
    12421 aataccaaaa ataggcaaag caagaaaaag ggcaagtaaa attgccccga gtttatagta
    12481 ttgtagggtt ttatacatta tctaaaaccg acttcatcgt aaattttaac agcttcttta
    12541 atattttctg ctatcttact cacagggatt tgatcttctt tgaaagttcc aaaatctttt
    12601 acagtttggc ttaattctac atcatttctt ataggaaatt cataattact atcagtaaga
    12661 attttttgaa tttcaggact taacataaat tccataaatt ttttagccgc atcttgattt
    12721 ttacttgatt ttgtcatagc aataccgcta atgttaatat gcgttcctct attgtcttga
    12781 ttaggaaaaa taatacccaa agaattcccc acttctacat cttttggatt tttagaattc
    12841 tttaaaagcc ctatataata agtattcata actgcaaatt tagcttcgcc tgcaaatact
    12901 tgtctagctt gatctctatc cccacccttt ggatttgtcg caagattttc aagcacacct
    12961 ttagcccatg ctttagcctc tttatttccg tcattagcta taatagatgc taaaagagtt
    13021 ttactataag gagctgtagc acttctcata acaatttctc ctttaaattc agcttttgct
    13081 aaatcttcat aatttttcat tttgctaata tcgatatttg cgtttttgtt gtaagcaata
    13141 attcttgctc tttttgtaat cgcaaaccat tctttatcct tatctcttaa atgagcaggt
    13201 ataaattctt ctaaatattt tgatgaaaca ggggataaaa gtcctaaatt tttagcttct
    13261 gtaagatttg aaatatcagc tgtgatgaaa atatcagcag gagaattact tccttcaaga
    13321 gaaagtcttt taataagttc tgaagcttta gcttgagtat gattgacctt aatacctgtt
    13381 ttttcttcga atttttttat gatttcaaaa tcagcattat aatgtcttgc tgagtaaata
    13441 ttaagctcac tagcacctaa aaatgaaaca gccgttaaaa acataaagaa gatttttttc
    13501 atattttatc ctttaattga gaattatact cggttttatt aagatcttta aaatcggtat
    13561 gagaatgttc agagcaagca aaagcaaagc caacgcatag taaaaataaa attatttttt
    13621 tcatagacat taattc
//
LOCUS       DARGED010000034        13615 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.034, whole genome shotgun sequence.
ACCESSION   DARGED010000034 DARGED010000000
VERSION     DARGED010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.034"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            94..1344
                     /locus_tag="SFZ84_000798"
     CDS             94..1344
                     /locus_tag="SFZ84_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEG8202934.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1359..2723
                     /locus_tag="SFZ84_000799"
     CDS             1359..2723
                     /locus_tag="SFZ84_000799"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG8202935.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEICAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2731..3252)
                     /locus_tag="SFZ84_000800"
     CDS             complement(2731..3252)
                     /locus_tag="SFZ84_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202936.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNFGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLLFLMICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3233..4213)
                     /gene="ribD"
                     /locus_tag="SFZ84_000801"
     CDS             complement(3233..4213)
                     /gene="ribD"
                     /locus_tag="SFZ84_000801"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG8202937.1"
                     /translation="MKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHE
                     KAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSH
                     QGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDILKEEGKKLLK
                     PFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDC
                     PILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKFLMYEGGEN
                     FLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIYEL"
     gene            complement(4445..4532)
                     /locus_tag="SFZ84_000802"
     tRNA            complement(4445..4532)
                     /locus_tag="SFZ84_000802"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4496..4498),aa:Ser,seq:tga)
     gene            complement(4554..4627)
                     /locus_tag="SFZ84_000803"
     tRNA            complement(4554..4627)
                     /locus_tag="SFZ84_000803"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4593..4595),aa:Cys,seq:gca)
     gene            complement(4646..4734)
                     /locus_tag="SFZ84_000804"
     tRNA            complement(4646..4734)
                     /locus_tag="SFZ84_000804"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4698..4700),aa:Leu,seq:taa)
     gene            complement(4744..4818)
                     /locus_tag="SFZ84_000805"
     tRNA            complement(4744..4818)
                     /locus_tag="SFZ84_000805"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4784..4786),aa:Gly,seq:gcc)
     gene            complement(4890..5642)
                     /locus_tag="SFZ84_000806"
     CDS             complement(4890..5642)
                     /locus_tag="SFZ84_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202938.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNANIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            5715..6734
                     /gene="mutY"
                     /locus_tag="SFZ84_000807"
     CDS             5715..6734
                     /gene="mutY"
                     /locus_tag="SFZ84_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG8202939.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHNYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6720..7979)
                     /locus_tag="SFZ84_000808"
     CDS             complement(6720..7979)
                     /locus_tag="SFZ84_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8202940.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFAIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8145..9002
                     /locus_tag="SFZ84_000809"
     CDS             8145..9002
                     /locus_tag="SFZ84_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG8202941.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLGNYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDKPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADIHLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLSD"
     gene            complement(8999..9805)
                     /locus_tag="SFZ84_000810"
     CDS             complement(8999..9805)
                     /locus_tag="SFZ84_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8202942.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFAQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGMDVKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9802..10578)
                     /locus_tag="SFZ84_000811"
     CDS             complement(9802..10578)
                     /locus_tag="SFZ84_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202943.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLKLKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10578..11564)
                     /locus_tag="SFZ84_000812"
     CDS             complement(10578..11564)
                     /locus_tag="SFZ84_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8202944.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11539..>13615)
                     /locus_tag="SFZ84_000813"
     CDS             complement(11539..>13615)
                     /locus_tag="SFZ84_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8202945.1"
                     /translation="LITNLNAQESNKAINLQKVVVSATGFEQDADSNLRNVISIEGKD
                     LQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIAVKVMIDGRAINVLDNS
                     HGVTPLNSINLDNVERIEIIPGGGSVLYGNGTRGGVINIITKKQKSDAFAINLKSSAY
                     DHGRLGGNLGINGVKQINENLAFSFDIQSFNLDGYQEGYNEKGYFINTKTYIDINDNS
                     DLTLGYNYFKSKNTSSGYLTKAQAQSNPTQKGKSDNITQINRPEISLDYHYYFDDIWE
                     FNLEAFWQNQKINYLKDEISMKGTTAYQNGSGFEDTLTGISLKNKLNYANNSYFIFGY
                     EFANHDAKRKSLVYYSVPGVINYHRMTTLMDMDKQSHSIFALDSHEFNDIFSISGGAR
                     YEFSTYNTNRSYRNEMSMNGKPSSSNPMITDQTTLFDTDKNTNNFAFEITPNFKYSDT
                     GKLYIKYERGFVSPSPAQFVNKDKNSQKYYSANLNPEIFDTFELGIDDFWWDFYGFNL
                     TLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLSQNFLDDDLILRESLT
                     YLDAKISKGVNDGMRIPYVSKIKATAGIEYAWNKNFSNFIDLTYFSRAKDGGIIDENT
                     GKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTYQDSINDQYLVGNGRN
                     YYVEFKYAF"
BASE COUNT         4575 a         2051 c         2167 g         4822 t
ORIGIN      
        1 tacataagat ttaaaatatt tttttaaaaa ataattattt ataaatattt tgctaaaata
       61 aaagagatgt aatcttaaat ttaaggaaga ataatgaata ctcctaaatg gactagtcac
      121 gatacaaggt gggttttatc tctttttgga acagctattg gagccggcgt acttttgttg
      181 cctattagtg ctgggcttgg tggattgata cctttgttag ttatacttgt tttagctttt
      241 cctatgactt acttagctca tagaaattta tgtcgctttg tgctttcaag ttctaatcca
      301 aaagatgata ttacttttgt tgcagaaagt tattttggca agggcggtgg atttttaatt
      361 acacttttgt atttttttgc tattttgcct attttattgg tttatagtgc taatcttaca
      421 acaactttgc ttgagttctt aatcaatcag ttcaatttca atgcagatct tactcatgct
      481 gctcgttggt gggtgagttt tttgattgtt ggagttttgg ttttgatttc tattcttggt
      541 gaaaatgttg taacaaaagc aatgagtttt cttgtttttc cttttattat atttttattt
      601 attttttcat tgcttttaat tccacaatgg aatttatcgt tatttgcaaa tgttgatttt
      661 tccgtaattt caacaagtaa tttttgggtt actttatggc ttgttattcc tgtgatggta
      721 tttagtttta atcactctcc tatcatttct tcacttgctt gttattgtaa aaaagaatat
      781 ggtggttatg ctgaacctcg cgctagaaaa attatttctt tggcaattat tcttatggtt
      841 tttgttgtaa tgttttttgt tttttcttgt gctttaacct ttacaccaga agattttgca
      901 tcagcaaaag atcaaaatat caatattctt acttttatag caaataaatt tcctgaagtt
      961 tctttgctag cttatgttgg acctattgtt gcacttgtgg ctattagcaa aagtttctta
     1021 gggcattatc ttggttctca agaaggctta aatggtattt tatataaagc aagtaatggt
     1081 agaattcaag gtaaattcgc tcaaacttta acagcgatca ttacctttgc tatcgcgtgg
     1141 cttgttgcgt ataaaaatcc aagtgttata ggaattatcg aggctattgg tggtcctgtt
     1201 ttggctattt tgcttttctt aatgccgctt tattgtattt atcgttttga tattttggca
     1261 aggtttcgta ataaattttt agatcttttt gttttggtaa tggggatagt tgcaatttct
     1321 gctgcaattc atgatctttt ataaattaag gataaaaaat gagtaattta agcattttta
     1381 aaataggtgt tggcccttct tcttctcata ctttagggcc tatgcttgct ggaaatttat
     1441 tttgtaaaaa agttgctaaa aagcttgatg aaattgatag agttgaggtt actctttatg
     1501 gttctttgtc gttaacaggc aaaggacact tgagtgataa ggctgtgatt tgggggttaa
     1561 atggcttaga agctaaaaat ttaagtgcgg caatacaaga tgaagtaaat aaaaatgcta
     1621 ttgaaaatgc tcaaattgat ttttgtggcg agaaaaaact tagttttaat tatgaaaaag
     1681 atttgatatt ttctaaagat tttttacctt tacatgagaa tggtatgaaa attaaagctt
     1741 atgattgtaa aggtgggtta gttgatgagg aaacttatta ttctgtaggt ggaggctttg
     1801 ttttaacagc tgcggaatta gaaaaaaaag gtaaaaattc taaccaaaat aaaaagaaaa
     1861 aactagatat agagcttaat aacgctaaag aagctttaga gctttgcgat aaaagagatt
     1921 gggatttggc agagctttct tatcgttatg aattgcaatt tcacactaaa gaggaaattt
     1981 gtgcttattg tcttgaaatt tgggaagtga tgcaagaagt gtattataat ggtacgcacc
     2041 cgaatgaaga ttatttgcct ggaaaacttc atttaaagcg tagagctaaa ggacttaaag
     2101 aaagagtagc gatgacagct gatcctatgg gtattatcga ttttatttct ttatatgcta
     2161 ttgcgattgc tgaagaaaat gctagcggag caaaagtcgt aaccgcacca acaaatggag
     2221 catgtgctgt tatccctgct gttatgcttt atcttaaaaa tcatactata ggttttagtg
     2281 atgaaaaggc tatagagttt ttattaacag caatgcttat aggttctttt tataagaaaa
     2341 atgcaagtat tagcggagca gaagcaggtt gtcaagcaga aattggtagt gctagttcta
     2401 tggcagctgc ggctatggca acagttttag gagctaatgc ttttaaagca tgtaatgctg
     2461 ctgaaatggc aatggaacat catctaggtc taacttgcga tccagttgca ggacttgtgc
     2521 aaattccttg catagaaaga aatgcctttg gagccattaa ggccataagt gctgctagaa
     2581 tggcaatgac acgcaaatcc actcctatgg taagccttga tgaggttata gaaaccatgt
     2641 atgaaacagg aaaagatatg aattataaat ataaagaaac ttctttaggt ggtcttgcta
     2701 caaatttaaa aacagtatgc taaagtgttt ttacacttta gtgtattttt tcattctttg
     2761 acttaaaaat tctttcattt cttctttgga aaaactttta agaatgcgaa tttgcttaaa
     2821 aagcaagcca agattgatta ctcccatcac taaaagcaat aagcaaatca ttaaaaaaag
     2881 aagatctatg gctccaaatt cattaatcat agccaaactt gcaaaaaata cactcgctaa
     2941 taacaaaaaa aataaaagca atatttgttt taattttgcc tcattaaaat tatcgcaatt
     3001 ttgagtgaaa tttctaaaaa gtatgatctt tttaccgaaa tttgaaacta aaatttcatc
     3061 attttcctta aataagcctt cttttaaact ttgataaaaa aagatttcat tatttaaatt
     3121 taaagcatct ttgtagcttg ataaggtgta gtctttgtaa aaaaaggatt ttaattcatt
     3181 tttcttttct attttaaata atcttaaatc atttctcgca taaaaaaatc cactaaagtt
     3241 cataaatgcc ataagtatca ctccctaaaa aattcctata aagtggcttg aaatttaaag
     3301 gtattgtaac atttttttca tcatttaaac ttgaactttg gaaaatcaaa aacatatcta
     3361 tttcatcttt aaaggttttg agaaaatttt ctccaccctc atacattaaa aatttagctt
     3421 cacttggaat ttgggtataa atttggcggt ttggaacttt aaataaaggg atatttttat
     3481 caaaattatc tatattttga cggcttaaga tacaaagatt aggcgctttt gctttgcaaa
     3541 gcctagcatc taatataggg caatcttttc ttatggtttc tccaccgact acaagcaaat
     3601 caatcaccgc tctaatttca tgtgcataag tgcgacttag ctcattgctt acgattttgc
     3661 caaaaggcga gccattcata gaaagggcta atttaaaaag tttaaattgc cctttttgcc
     3721 attttaaaaa aggttttaaa agtttttttc cttcttcttt aagtatgtca aattcaacct
     3781 ctatgccttg tttttttaaa aattcagccc caccacttgc gattttattt ccatctttaa
     3841 cgctgatgaa aattttttta aaacctagct cgctaaagag ttttgcacaa ggaggcgttt
     3901 ttccttgatg agagcaaggc tcaagtgtga caaaagctat gctatcttta aatacacctt
     3961 gatggttttt gcaaataaac tcatgcaagg cgtttgcttc tttgggcaat gaaatttcag
     4021 gtcttaagct tttaaaagca tgagctatgg cattaagttc cgcatgagct aatccagctt
     4081 tttcatgagc ttttatggct aaaatttttt catttttatc taagattaca cagcctacag
     4141 ccggatttgg ataggttaaa aactgatatt tccaagcctc atttaaagct aaattcatat
     4201 aaaattcttt catttgccta ccttatattt taaaatttga catattttta aaattttata
     4261 tttttgtttt aagataacaa attctaaatt ttccatttgt atttcttatt tttaattata
     4321 ttagccatag tttttttaag ttttttagga tataacgaaa atagtaagat tgaagtatta
     4381 tttttcattt gtagtatcct ttaaattagg aatgatataa gcttgataaa ctagaaagtt
     4441 ttggtggccg ggagaaaggg attcgaaccc ctggaggtgt gaccctcaac ggttttcaag
     4501 accgccgctt tcgaccactc agccatctcc cgataaagta aagttttgcc ttttggaggc
     4561 gacatccgga ttcgaaccgg agatcaaggc tttgcaggcc catgccttac cgcttggcta
     4621 tgtcgccctg ataatgttga aaaagtggtg cccgaggccg gacttgaacc ggcacggaag
     4681 aaaaattccg agggatttta agtcccttgt gtctaccaat tccaccaccc gggcgggtga
     4741 ttatggagcg ggaaacgaga ttcgaactcg cgaccccaac cttggcaagg ttgtgctcta
     4801 cccctgagct attcccgcat aaatttctga aagaattgaa gataaaagta tagcaaaata
     4861 aacttaaaag gagtttattt tgccttaagt tatttgcaaa taaataaagc tttcgcgctt
     4921 aaaatttgtt ctttttcgct gataattgga gatgaaagtt ctatattgtc agattttgca
     4981 tttaacattc taggtgcgat attggcattt gtatttactt gtaaattttt caatacacaa
     5041 gttttattaa gatctaaaga gtaagttttt tcatattcgt atgatgtttt taaaagctct
     5101 ttgtagagat tttctttgtt gttgtttagt gtatcttttg aaaattttgt ttgtatggct
     5161 ggtgttgaaa cgctgatgaa attattttta gctatgatag aattgatgtc atttaaaagc
     5221 ttgttaaaat ctgcaagttg gttttcttta aattcacatt ctaaattcgc atcaaatctt
     5281 tgaccttttg gagtttgtat accatcttta taggaaaaat taggctctaa agaaaaactt
     5341 cctccgctac aaaaattttc tttttttgag cgttctaaaa tttgattgaa agtatttgtg
     5401 atttcggctt tttcactatt gtctaatgta atttttgaac ttaaattttc atttgcccaa
     5461 aaattaatat ttgcatataa aatatcgggt tttagcgtat tgcttacttc tatatttctt
     5521 gaaaaatata aatcatgatt agagtctttt ttgcctaaaa attctacatt aaaaactact
     5581 cctgcaacaa aaagtaataa acataaaaaa cctacaccta aacctttaaa aaaagctaac
     5641 atggatatcc ttaataattt aatttgagct aattttagca aaaaatttta aaattttttg
     5701 ttatactctc atttatgcaa aaaaaagagc ttgaaaaact acaagaaaat ttacttcttt
     5761 ggtatgaaaa aaatggacgc aaaactttgc cttggcgtaa tttacaaagt caaaattgtg
     5821 atgaaagttt aaagcatatt gatagagctt atggggttta tatcagcgaa attatgcttc
     5881 agcaaactca agttaaatca gttttagaaa ggttttattt cccctttttg caaaaatttc
     5941 ctactttaga aagtttggct aatgctaatg aagacgagct tttaaaggct tggcaaggac
     6001 ttggttatta cactcgtgct agaaatttaa aaaaggcagc tttagaatgc gtggataagt
     6061 ttggggctaa attacctaaa gaagttgagg atctaaaaaa attaagcggt ataggagctt
     6121 atacagcagg cgctatagct tgttttggct acgatcaaaa ggtttctttt gttgatggca
     6181 atatacgccg tgtgctttct cgtctttttg ctttagaaaa tcctagcatg aaagaacttg
     6241 aaaaaagagc taaagagctt ttaaatttaa atcatgcctt tgatcacaac caagctttgc
     6301 ttgatatagg ggctttggtt tgtgtgggta aaaatgcaaa gtgtgggatt tgtcctttgt
     6361 atgatttttg tcaaggcaaa tttcatacag agctttatcc aagagctaaa aaaatacttt
     6421 atgagagttt aaatttaaat ctttttttgt ttgaatttaa taaaaaattt gcgatacaga
     6481 aaagccaaga taagctttat aagggtatgt ataattttcc tttttttaaa gaaggagagt
     6541 ataaactttc taaagatatg ggttttgtag gggagtttaa gcacaactat actaagtata
     6601 aacttaatat caaggtttat catcaaattt taaacaatga aaataaaaat tatgaattta
     6661 aaaccttaaa agagttagaa agtaccgcac tttcggcact ttctttaaaa gcgttaaaat
     6721 taattaagct ctgatttttt aggcaaacat aaagtagcta taagcatgat gattgtaaaa
     6781 atagctatat atataaaaaa gccattttct atacctgcat ttttaaattg taaagcaacc
     6841 caaggagcag atcctccaaa aacagcattt gaaatagcat aacccaaacc tgtccctaaa
     6901 gctcttacat gttcaggaaa aagttttgct ttaaaaatcc cagcaactga agtataaaaa
     6961 cttaaaataa caaacaataa taccaccaac ataaatgtca aagaaggatt attttgtgcg
     7021 ttattggcta taagtgaaaa aataggataa attcctacca atgccaaaat acaaaataca
     7081 attaaagatc gtttgtgacc tattttatct cctatatatc caaaaagagg ttgaatgatc
     7141 attagtataa ataaagcacc taagaaaaga ttattaacaa gcattttatc catacctgta
     7201 ttttccataa aagttttagt ataagttgta atagtataaa aagctaaaga acctccagag
     7261 gtaaccccaa gtaccattaa aaaaggtttc caagatttgc ataatgcctt taaagtacca
     7321 cgatcttcat gctggtgaag ttttgtagca ctttcattca tcatttttct tacaaaaagc
     7381 gagcctagtg ctaaaattcc gcctattgca aaaagtattc tccaagcata atctttcata
     7441 tcatcaatgc taaaaaataa aaacattata ctaatgcttg caacggccaa aagttgacca
     7501 cctattaggg ttacatactg aaaagatgag taaaaaccgc gttttccttc cgtagcaagt
     7561 tctgaaagat aagtagctgc tatgccatac tccccgccta cactaagacc ttgaataagt
     7621 cttgctatta aaagcaagat aatagcaaga tcgcccactg tatctttgct tggtaaggct
     7681 gctatcataa aagagcccaa agccattaaa accactgata taaccataga tttcttacga
     7741 cctactttat cagccaaaga accaaaaagc caagaaccta taggacgcat aaaaaatcct
     7801 gctgcaaaaa ctccaaaggc attgatttgc tggataacag gattatctga agttgaaaaa
     7861 gtatgagcaa aataagttgc tgtaaaagca tagatataaa agtcaaacca ctctactaaa
     7921 tttccgctac ttgcagcaat aatagagcga atttttttcg tgcgagtaag ctcttgcata
     7981 aacccttcct taattttaga tttttattta agtatagtgt gatttttgtt taatatattt
     8041 aaaaataaag aagagaaata aaaaagataa aaatatcgat aaaaatgtta catattttaa
     8101 taaatttcat aaattttggt aaaatgttta ctctaggaaa tataatgaaa tttaaaaaaa
     8161 tatatataga attaagtgat atttgtggtt taaaatgcga tttttgtcct tctcgaaaag
     8221 gaattcgcgg ggtaatgagt gaagaaaaat ttcaaaactt agcttatgaa atttctaata
     8281 aagctgagct ttttaccttt catcttttgg gcgatccttt gcttttacct aatttgggaa
     8341 attatctaaa aatcgcaaaa gatgaagcta tgaaacttga aatcactaca agtggctttt
     8401 atctaaattc taaaaatcaa gctttattgt tagggtatga gaatatccat caaatcaata
     8461 tttctttaat gtctttttta agtcaaagca aaatttcttt agaacagtat tttaagccta
     8521 ttttagaact ttgcaaaaag catttagagc aaaaaagcct ttcttttatc aatctaagac
     8581 tttggaattt agatgctaat tttaaagcac ctaagtcaaa tttaaaaatt tatgagtttt
     8641 tagccaaaga atttgaagct aagatcgatg caaacttaag taaaaatcgc ttacaaagac
     8701 atattttgct tcatcaaaat aaacttttta aatggccaaa tttaaaagat aaaccccttt
     8761 ataaaaaagg aaaatgccat gctttaaaag agcaaattgg gattttaagt gatggaagtt
     8821 tagtgccttg ctgtttggat actaaggcag atattcactt gggaaatgtt tttgaaaata
     8881 actttgataa gctttttaaa tcaccgcgta taaagatgat gaaaaaagct tttgaagaag
     8941 ataaacgcat agaaaaactt tgtcaaactt gcgaattttt taaagcaaga ttgagtgatt
     9001 aaaaattgtt attttctagc tttgttttaa attcttgaat tctatctatt atcttaggac
     9061 taagacgtaa taatataggt gtatctttgt taaaataaat acttcctgtt ttaactgctt
     9121 tggtattttt caataaagca tttgtatcta aaagattatt tttgacatcc attccaagaa
     9181 tgagtatatc tggattttgt ttcagtatat attctgctga tataacaggt cttgaaattt
     9241 gactttgcgg acttaaattt ttaatcccta taagtcttaa aatatcagct attaaagaat
     9301 tatcattaaa ggccattaaa gggttgctag aataaagata aatcgcactt ttatttaggg
     9361 gtttatcgct taattttttt aaattttgag caaattcttg ttttaaaagc tctgcttctt
     9421 tttctttttt ggtgatttgg cctaaggttg tgatattttt tgttatatct tctaaacgct
     9481 cggcttttaa attgatactt ttgataccaa aatttttaag tccttcttct aaatttaaag
     9541 aataagagct taaaatcacc aaacttggtt ttagtgctac tattttttca agtgaaggat
     9601 ttgaaaaagt gcctacgctt gtaagttttg aggtttgatc tttaggatag atatttgagt
     9661 gttgtaaagt ggcaatgcct acgatttgat cttcagcctt aagcataaaa agggtttcta
     9721 tgcttgcagg atcaagcact acaaggcgtt cttttgcatt tagtgtgatt aaaaacaaac
     9781 tcataataat taaaattttt ttcatttttt ctcctttaaa gctaaaatat aaggtttaga
     9841 atttttataa ataatctcgc agtttaaatc ataaatttct tttaaaattt cttgagtaaa
     9901 aagctcttta ctcgttccaa aatactttat ctccccttct tttaaaaaaa ggattttatc
     9961 gcagaacata gaagctaaat ttaaatcatg caagatagca acaacggcta tatttttttc
    10021 tttaactagt ttttcgcaaa ggcttaaaag ctctatagca tagtttaaat caagggctga
    10081 agtgggttca tctaaaaaaa gaatttttgg ctttttaagt aaagctcttg ctaaaagcat
    10141 tctttgaaat tcacctccgc ttaaagaaag tatgcttctt tctagaaaat tttcaagtct
    10201 taaatcctta gcaaattctt taatttctaa aatatcttct ttagaataag aactaaaagc
    10261 atgttttaaa ttcgcatatt tgctcattaa aagcacatcg atgactttta aaggggtgtt
    10321 taattctgat ttttgaggca caaagccaca aattttggca aattctttaa gagaaaaatc
    10381 cttgatattt gtgttaaaaa gacttatctc tcctttattt ggacttaaat ttttaagtat
    10441 aagttttaaa agagtgcttt tacctgagcc atttggccct aaaattccta taaaagcctg
    10501 atttttaagt tttaaatgaa tgttttttag taaatctttt tggtgataag caaagcttaa
    10561 atcatgtatt tttagcatta taaaaatctc ctagcactta aagccaagta taaaaaaata
    10621 ggagctccaa aaaatgcagt taaaattcca atcggaattt gcacaggagc taaaagagtt
    10681 cttgctaaag tatcacaaat aagtaaaaat aatcctccaa atgctgtaca taaagggata
    10741 actaaggcat tattataatt tttaagcaaa agtcttatag tatgaggaat gatgagtcca
    10801 acaaagccta taagtccgct aaaagcaacc gcaaaagata cagccaagga tgagacaatg
    10861 agtaaattta tctttaattt ttgagcattt acccctagat ttctagcttc atcatctccg
    10921 cttaaaagta tgtttaattc gtttttatga gcgtaaaaat aaaacaaaca aaaaattaaa
    10981 ggcaagatta aaattcccac acgaaaccaa gaagcattgc ctatatttcc cataagccaa
    11041 gcgactattt taaaagaatc ttcgcctata agataagtga aaaaagaagt aaaagctcct
    11101 aaaaaagatg aagctgctat gccgataatg agtaaagtcg ctatagaagc tttagaagaa
    11161 attttaaaaa ctcctagggc aaaaaaggca gagcaaacaa aacctaaaat tccataataa
    11221 taatcattca attttaacaa atacgccaaa accgctccaa aggttgccgc agaagctata
    11281 cctatgatat aaggatcggc tataggattt gaaaatacat tttgagtgat agccccacta
    11341 ctagctaaaa gcataccgat taaaatcgcc attataatcc gtggtaagcg tccatctatg
    11401 atgatttgtc ttaaaatttc atcttggcta aagatatatg aaaaaagctc ttttggattt
    11461 aaattctcat ctcctaagca aagtgctgta aaggaagcga ttatataagc taccaaaagc
    11521 cctataatca ctaaaatttt agaatgcgta tttaaattca acatagtagt ttctgccatt
    11581 tccaactagg tattgatcat ttatactgtc ttgataggtg tagtatcttt tatcgaaaag
    11641 attgcgaatt cctgctaaaa tttgtaattt tttataatta tatttcatgc caatatctgt
    11701 taaaaaataa tcccttatcc aagaattttt agacattttt cctgtatttt catctataat
    11761 tccaccatct tttgctctag aaaaataggt taaatcaata aaatttgaga aatttttatt
    11821 ccaagcgtat tcaatcccag ctgtggcttt gatttttgaa acataaggaa ttctcatacc
    11881 gtcattaaca cctttagaaa ttttagcatc aagataagtt agactttctc taaggattaa
    11941 atcatcatct aaaaaatttt gactcaggct taattctact cctaaacggc gagtttgatc
    12001 tatattataa tatttccacc aagatccact agtagaatga gggtttccaa gataagaaat
    12061 ttcatctttg cttagggtgt aaaataaagt tagattaaag ccgtaaaaat cccaccaaaa
    12121 atcatcaata cctagttcaa aggtatcaaa gatctcagga tttaaatttg cagaataata
    12181 cttttgtgaa tttttatcct tattgacaaa ttgtgctgga cttggagaga caaaacctct
    12241 ttcgtatttg atataaagct ttcctgtgtc tgagtattta aaatttggag tgatttcaaa
    12301 agcaaaatta ttggtgtttt tatcggtatc aaaaagggtt gtttggtctg tgatcatagg
    12361 atttgatgat gacggttttc cgttcatact catttcattt ctataagatc tattggtatt
    12421 ataagtgcta aattcatatc ttgctccacc tgaaatacta aaaatatcat taaattcatg
    12481 agaatcaaga gcgaaaatag aatggctttg tttatccata tccattaaag ttgtcatcct
    12541 gtgataattt atgacacctg gaacgctata atacaccaaa ctctttcttt ttgcatcatg
    12601 gtttgcaaat tcataaccaa aaataaaata agaattattt gcataattta gcttgttttt
    12661 taaacttatc cctgtaagtg tgtcttcaaa gccacttcca ttttgataag ctgtagttcc
    12721 cttcatagaa atttcatctt ttagataatt gattttttga ttttgccaaa aagcttctag
    12781 gttaaattcc catatatcat caaaatagta atgataatcc aaagaaattt cagggcgatt
    12841 gatttgtgtg atattatcac tcttaccttt ttgggttgga ttgctttgag cttgtgcttt
    12901 tgttagataa ccactgctag tatttttgct tttaaaataa ttataaccca aagttaaatc
    12961 gctattatca ttgatatcaa tataggtttt tgtgttgata aaataacctt tttcattata
    13021 accttcttga tatccatcaa ggttaaaact ttgtatatca aagctaaaag ctaaattttc
    13081 atttatttgt ttgacgccat tgatacctaa attcccacct aatctaccat gatcataagc
    13141 actgcttttt aaatttatag caaaagcatc tgatttttgt ttttttgtaa tgatattaat
    13201 cacaccccct ctagtaccat ttccataaag cacagaccca cccccaggta tgatttctat
    13261 gcgttctaca ttatctaaat tgatactatt tagcggggtt acaccatggg aattatcaag
    13321 aacattaata gcacgcccat cgatcataac ttttacagct atattggact tatttccttg
    13381 tccacgcata tctatattgc gtccaagtcc aaaatttaca aaactaatgc ccgaaattct
    13441 ttctaaggct tgttctaagg aaacataacc tttattttgc agatctttgc cttcaatgct
    13501 gattacattg cgtaaatttg agtctgcatc ttgttcaaaa cctgttgcac taacaacaac
    13561 tttttgtaga ttgatagctt tatttgattc ttgtgcattt aaattagtta ttagc
//
LOCUS       DARGED010000035        12822 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.035, whole genome shotgun sequence.
ACCESSION   DARGED010000035 DARGED010000000
VERSION     DARGED010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12822
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.035"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(33..482)
                     /locus_tag="SFZ84_000814"
     CDS             complement(33..482)
                     /locus_tag="SFZ84_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202946.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKISKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(498..3743)
                     /gene="ccsA"
                     /locus_tag="SFZ84_000815"
     CDS             complement(498..3743)
                     /gene="ccsA"
                     /locus_tag="SFZ84_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG8202947.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTLGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(3761..4456)
                     /locus_tag="SFZ84_000816"
     CDS             complement(3761..4456)
                     /locus_tag="SFZ84_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202948.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(4443..5213)
                     /locus_tag="SFZ84_000817"
     CDS             complement(4443..5213)
                     /locus_tag="SFZ84_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8202949.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5210..6262)
                     /locus_tag="SFZ84_000818"
     CDS             complement(5210..6262)
                     /locus_tag="SFZ84_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8202950.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGATGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(6262..7158)
                     /locus_tag="SFZ84_000819"
     CDS             complement(6262..7158)
                     /locus_tag="SFZ84_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8202951.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7177..8286)
                     /locus_tag="SFZ84_000820"
     CDS             complement(7177..8286)
                     /locus_tag="SFZ84_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8202952.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8308..9423)
                     /locus_tag="SFZ84_000821"
     CDS             complement(8308..9423)
                     /locus_tag="SFZ84_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8202953.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNSPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(9454..9888)
                     /locus_tag="SFZ84_000822"
     CDS             complement(9454..9888)
                     /locus_tag="SFZ84_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8202954.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(9897..10088)
                     /locus_tag="SFZ84_000823"
     CDS             complement(9897..10088)
                     /locus_tag="SFZ84_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG8202955.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(10141..10647)
                     /locus_tag="SFZ84_000824"
     CDS             complement(10141..10647)
                     /locus_tag="SFZ84_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG8202956.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(10656..11687)
                     /locus_tag="SFZ84_000825"
     CDS             complement(10656..11687)
                     /locus_tag="SFZ84_000825"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG8202957.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGASVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILKKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(11687..>12822)
                     /gene="flgR"
                     /locus_tag="SFZ84_000826"
     CDS             complement(11687..>12822)
                     /gene="flgR"
                     /locus_tag="SFZ84_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG8202958.1"
                     /translation="IDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPF
                     DVDTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDA
                     SVMFFGESGVGKEVFSRYIHTHSKRSNKPFIAINMAAIPANLIESELFGFEKGAFTDA
                     NATKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIIS
                     ATNANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFK
                     EKQLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKN
                     LEKELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
BASE COUNT         4571 a         2441 c         1515 g         4295 t
ORIGIN      
        1 ctataaatca cagtcctctt gagcgcacca tattatttat cttctttaat ttttctttta
       61 gctaatccca tatgctcgta agcatcaatt tcttttttgt aagatccaga aattttctta
      121 agttctttat ttaagtaact tactgtttgt gcacttgcat taatatttgc agccaaagca
      181 gaaacaaatt ctagtttctt ttttgctgct tcatctaatt ctttagaaat ttttgaacca
      241 agtttatgtg tctgcacata aagtttggca agttctttta attcaatatc cgttagttta
      301 acatcggaag cagcaattat cattttatct aagtctgtat caaatttttt agtcttttca
      361 gctacatgct gcttttggct agttttttgc tttttaattg tttttttgcc atcacttgta
      421 ataagataag caatcacgcc taaaaacaat aaaagcgcta aagcagcaca aaaaataacc
      481 aaaaaaatat ggttcattta aagtttgccc acaaaatttc gcttccttct tgcaaaaaaa
      541 gctaaaacca ccatcaatgc aaatccccaa taaacataat taggaatttg agccgcttcg
      601 cctgcagcgt aagaatgaag tcctgttaaa aagtaattta ctccaaaata agtcataata
      661 ataacccaat aagcaaacat actccataaa gcaaacacaa attgattaca atattttgga
      721 atcattctaa gatgcaaaat tgctgcataa accaaaatgc taactaaagc ccaagtttcc
      781 ttagaatccc aactccaata tctcccccaa ctttcatttg cccaaattgc tcctaaaaaa
      841 tttcctacag taagcaaaca aagtccaaaa atcattgcca tttcattaat tcttgtagcc
      901 tctgtaatat ttctcaaaat attaagatta tattttccat ctttcttaag aaaacacatc
      961 aagaacaatg taaagatacc aagtaaggca caaagtccta aaaatccata actagcagta
     1021 ataacagata catgaatact aagccaataa gaattaagca caggaacaag atttgtaatt
     1081 tgcggattca tttcgcttaa atgcgcaacc attaatacaa caccagataa aatagaagtt
     1141 aatgacaagg ctataggact ttttctggag aaaaatatac ccgacaaaga caatgcccaa
     1201 gctatataca ccatactttc ataaccatta ctccatggag catgacctga taaataagca
     1261 cgaagtccaa gacctactgt atgaattaca aaagctaaaa catttaaaac atataccact
     1321 ttaaatataa aagagatttt taaattcggt acgaccattt tagaaaaaac aagaatcaaa
     1381 agtaaaaaac ccgcaattaa atatacagga gcgagtttaa cgaaaatttc agccttatta
     1441 gaaaaaattt ccatttcaac cttggtttta ctaggcatga ctttatatcc tattttttct
     1501 tgatattctt tgataaattt caagccttca tcagctctag tccaattacc atctttaaaa
     1561 gcattttcca cggcactaaa ataattctgt attaaagcca aaacaatatg cccttcatcc
     1621 cccttaagag tagttacagc agaaaaaggt gcaagccaaa cattatttgg attattttga
     1681 acaggaataa atttaaataa ttcaccacta aaaactaaat ttacaacatt agctctttca
     1741 tctagtttta taatttcctt atcaaaaact cctcttgcat ttgggttttt acgatttgca
     1801 ttttcaacat atttttgaag tttatatcgg ttattctcat caaagaaatc tttataagaa
     1861 atatatttag cactaggaat ttctaaaata tttgcaatag catcacgaac tgcttgattt
     1921 tgtggcatta aaataaaagg ttccatttgc catttatcta catcaacgag catggaaagc
     1981 ataacagcgt tagaattttg acccttatag ctatcacttt gatgaatttt ttctaaaatt
     2041 tctcttgata gcgtatcaaa aggcaccatt cttccatctg ctgatttttg aactattaaa
     2101 gtggcaagag ctttagcatg attagtattt accacaggta aggtcgaatt taaatcttga
     2161 gcaaaagtct tttcagaacc aaaagataac aataaaataa aaataatcac acttgtatgt
     2221 tttaaagtgt ctttattaat taatcttgcc aaagttctaa atctagaatg tggatttaaa
     2281 aaattcataa acattccaag acaaagcaga aaataaccta tataagttgg tattttgccc
     2341 ggatctttat ttacagataa aacagtccct ttttcatctt gatcataaga actttgataa
     2401 aatctatagc catcataatc taaaacatta ttcataaaaa ttctataatc aaaattttca
     2461 ttattatttt ttacggtaat ttcacttgca taagaagctg gagacataga acctggataa
     2521 cgatctaata caaaatctct taaataaata tcaaaaggca attgttcata agaaagcgcc
     2581 caagaaataa agaatttttg atctgcaagt tctatcataa taggtttatt atattcaaaa
     2641 atataaaatt ctttactttc atttttatag cttaattcta attttaaagc attagagcca
     2701 gttaattcta agtttttatt ctcattgctt aaggcaaaat ctttaaaatg caataataaa
     2761 gaatttttcc aattttgagg ctcgcccaaa gtagaaatca acatagttct acccacttct
     2821 aaccaagcag atttaaacca taaccaaaaa ctttcatctt gaggtctatt ggaaccttct
     2881 aaagcttctt gcgcatgcaa agaagcagct ttaactacaa aactaatatc attaatttca
     2941 taaagtcttc tttccttagc atttgccttt tctccaattt taaggtctaa attttgtcca
     3001 tctagcatgc ttagaaaatg taagttttca cttgaactta aagttaaatt ttcatcaatt
     3061 tttacaaaag gtgctttgac attatcattc ataaaagcaa agttaacccc ttctatattc
     3121 ttaacttcac ctttttcaaa tttaacatca acaccttgag atcctttttg agaaagcatc
     3181 aaaaccaata aaggatcaga attattattt tctttataag tataatgagc atttaagatt
     3241 aaatctttat attttaatac agcttgatca tcacctaaat taagttttag tttaaaagaa
     3301 ttagcaaaag gcaaatttcc tatataacga tcattaaccg cactatagcg ttctccatct
     3361 tttatagcag aaatacgcaa agaagtctta gaactttcta taagtgaatt ttgagtatgc
     3421 tctctaatag gtaaaatacc ttcaaaacca gcatatcttg tcattgcaga acccactaaa
     3481 ataaataaaa aagaaatatg aaaaatcatt aaaggtaatt ttttaagccc aaacatttta
     3541 taacgaaaca tcccgcatag taaattaata ccaagtaaaa gttgtatata ttcaaaccaa
     3601 aaagtatcat aaaccattgc ccaagccgta ggggttccat aagcactttc aataaaagtt
     3661 gccaaagcac aaaaaagcgc aaaaagcaaa aacaatacaa ccgaaactct taaatcccct
     3721 atgcttttta ttatattttt cattcttttt cctttaaatt ttaaagccct aaatatttct
     3781 ttctaatctc atcatcacct attaaatttt tagcctcgtt ttccattaca atgcgaccat
     3841 tttccaaaac ataagcataa tcacttattt ttaatgcaga ataagcattt tgctctacca
     3901 aaagaatagt tataccctct tcttttaaac gcacaataat atcaaaaact tcacccacaa
     3961 tctttggagc aagtcccaaa gaaggctcat ccaacatcaa aagttttggt tcactcatta
     4021 aagcccttga aatcgcaagc atttgcgctt cccctccact caatgttcca gctaaagcat
     4081 gctttttact tgcaagtctt ggaaaaagtt tatacatttg ctctcttaaa tgctcataat
     4141 tttcagcatt attaaaagca cctattttta aattttcctc tacgcttaaa ttaataaaaa
     4201 cacgccttcc ttcaggaact aaagctatac ctttttgaac taaagtatga gttaaatgcc
     4261 ttttagtatc ataacctaag aaattaacct caccagttct tttaactgag tttaaaagcg
     4321 catttaaagt tgaagtttta cctgctccat ttgaacctat aagagaaaca atatgacctg
     4381 tttccacttt aaaatcaatc cctttaacag cttcaattaa tccataataa acatgcaaat
     4441 ctttaactat tagcatcaaa atcccctaaa tacgcagcaa ttacttcttt atgatttaca
     4501 gcatcgcaaa gtttaccttc aaaaattgtt tttccataat caagtaccaa tacgcgatca
     4561 cacaatttat ttacaaattt catatcatgt tctataagca aaacgctaat tttataatct
     4621 tttcgtaatt taaaaatgag cccagcaagt tcatcactct cagagctatt catcccagcg
     4681 gctggctcat caagcaataa taatcttggt tgagtagcca ttgctcttgc aatctcaact
     4741 tttctttgtt gtccataact caagctagta gccttttcat aggcaaattc tgcaatacca
     4801 agttcttcta atattgcata agccttctct ttaaatactt gttctatttt tccaaaacgc
     4861 cctaaatgca aaaaggcttc aaaaatatta tatttcattt gtttattaaa accaataaga
     4921 acattttcaa gcacattcat gcttgaaaaa agcctaatat tttgaaatgt tctagctatt
     4981 cctaaatgca caatcttatg aggttttaag tgatcaattc tttctcctag aaattcaacc
     5041 gaacctgaac taggtttata gttacctgtt ataatattaa aaagagttgt tttgccagcc
     5101 ccattaggtc caattaaagc aaaaatttca ccctcattga ttttaaaaga agtttcatta
     5161 atagccttaa cactaccaaa actttttgaa atttgtttta attccaaaat cattttttgc
     5221 tccttttaaa acgcttttta atccctctaa tcacatcact caactcataa taacccatta
     5281 tgccttttct tgcaaaaagc attactaaaa tcagaacaat agaaaaaaca accattctaa
     5341 gccctggcgt tgattggata tcaagattta aagaatctat ttttatattt aactcatcta
     5401 aaaatctaag ccactcactt ccaccaataa ccaatatcgc acctataata gcacctgtag
     5461 tagaaccaag tccacctaaa acaataataa tcaaaagctg aaaagtaagt aaaaaatcaa
     5521 attgagttgg agatacggta gtcaacagac aagctaaaag tccgccacct acaccttcta
     5581 aaaatgctga agtgctaaaa gctaaagttt ttatccaaaa agtatttatt cccatagcgc
     5641 ttgcagcatc ttcatcatct cttatagcct tcattgcacg accatattta gaataaacta
     5701 tatttaaaat taaaataacc gctacaatag caataccacc tgtccaatag atcgtggaaa
     5761 attgtggaat atctaccagc cctcttgagc cattagtaat agaaggaaaa ttaatagcag
     5821 ctattttaat aattattcca aagcctaaag ttacaatagc caaataatcc cctctcacgc
     5881 gaaatacagc aaaagccaaa atcagggcaa gtaaagatga acaaattcca gccacaatta
     5941 aagctagaat aaaggaattt gaatggatag ctaaaataaa agaactagga ccatctaaaa
     6001 aaaactgatc attttttgca tcagcactta aaagaactaa agcagccgca taagctccaa
     6061 tcgcaacaaa tccattgggt tctagtgaaa attgtccagt tgcaccatta ataagattgt
     6121 aactcacagc caaaataata aaaatagcaa tttgattaac aatgtttaat ccataatccc
     6181 caaaaatata aggagaaatg aaaataaaaa taattgaagc aattaaaaag attaaatgtg
     6241 aaaccttaat tctaaccatc attaaaacct actcttttca aaatttatac ctaaaattcc
     6301 cgtaggccta aataacaata taaacaccaa aaaaataaaa gcaaatgcat ctttaaagcc
     6361 tgataaatct ggaaaaaaag ccacaacaac aacttcagta aatcctataa taagtccacc
     6421 caaaactgca cctactacag aacctatacc tcctaaaact gcagcagcaa aagcttttaa
     6481 acctattaaa gttcccatag taggttcaac agagtaataa tttgcagccc aaaaaacacc
     6541 cccaactgct gccaaagctg aacctagggc aaaaactata gcaataatac gatttgcatc
     6601 tatacccatt aaatttactg tttgtatatc aaatgccaaa gcacgaatag ctataccata
     6661 tttgctttta tacaaaatcc ataacactgc tattaaaata acaaatgtaa gagcaggaac
     6721 cattaaagaa ccataagttg ttatcactcc accaaaatta acactttcct caaaataact
     6781 tggcggtgta aaagttctag gtgttgaagt aaaaagcata ttaaaaagat tttgcaagaa
     6841 aaaactaata ccgattgctg taatcaacaa tgaaattcta ggagcctgtc ttaaaggttt
     6901 ataagcgatt ctatctgtag ctattccaac acaagcagca aaaatcattg ctaaagacaa
     6961 agctcctaga aaaggaacat ttagattagt catgcaaaaa agagccgcat aagcaccaac
     7021 catcataata tcgccgtgag caaaattaat aagtcttaac acaccataaa ccatcgtata
     7081 gccaacagca ataagagcat acatactgcc caaactaagt ccattaacaa gttgttgtaa
     7141 aaataaagta gaatccataa tctttctatt tttcctttaa ggattgataa tatctttata
     7201 attttgcttc tgatttttaa tttctttaac cactacagaa cgagttgcat ttcctgtttg
     7261 atcaatactg ataacaccag aaacaccttg ataattttta gtttggtgaa ttttttcatt
     7321 gacacactta ctagtaagat tttcaacgca agcattcata gcatttagca ttacaaaata
     7381 cgcatcagca cccatagccg aaaaatttgg aacttctttt gttcctttag ctttttcata
     7441 aacactgata aattctttgc ttaattttgt agttggatta ttagcatcaa aactatctgt
     7501 gaaaatataa ccctcgcttg catctccagc taaactaata aaagtttgat cagcaactcc
     7561 atctgcagaa cccataggaa tatttaaacc tgcgagtttt gattgtcttg caaataaaga
     7621 agcttcgcta taataaagcg gtaaaaaaat aaattctgga tttaaacttt taacttgagc
     7681 tacaatagct ctaaaatctt tatcacctga attaactctt aaaattctaa gaatttgacc
     7741 accattagac ttgtactgtt tttcaaaagc ttttgctaaa cctaaggaat agtcagtgct
     7801 ttgatctact acaataacag cacttttgta attaagtttt gaaaaaacat attttgctaa
     7861 agatgaacct tgaaaactgt ccataaaaca tactcgagaa gaatatattt ttttatcaag
     7921 caatctatca ccagttgcag caggagcgat caatggaatt ttattatctt ctgctacgcg
     7981 cataacttgc aatgtattag cagtaaccat ttcccctata aggcctataa ctttatcttg
     8041 agaaactaaa cgatttgctc cactcgaaga ttctaattta tcacctttag tatcaataat
     8101 agcaagagaa accttatctc cattacttaa agctgattgc attgaatttg caagtttaat
     8161 cccttctagt gcgctttgtc catatgctgc agtagctccg ctaagcggta aaacaactcc
     8221 tattttgact tccgcagcac ttaaacttaa acttagaata cttgctaaaa ttaaactttt
     8281 tttcattctc tacctttatt ttagtaatta tggatttata attgttttat aattttgttt
     8341 ttgattttga atttctttaa tcacaacaga acgaatggca ttaccgcttt catctatgct
     8401 aatcacacca ccaacagctt gaaaatcttt agtttgatga attttgctat taatacattc
     8461 gctgctaaga ttatcaacgc aagcattcat agcatttaac attacaaaat acgcatcagc
     8521 ccccatagcc gaaaatgctg gaagttcttt tgttccttta actttctcat aagctgcaac
     8581 aaaatctttt cctaattgtg tagatggact gttataatca aaactatcag tgaaaattac
     8641 tccattaaca gcacttccgc caagatctat aaaagtttga ttgttaacac catctcctgc
     8701 tgctaaaagt ttatcaaaac caatttgtct tgcttgtctc gcaattaaag cagcttcagg
     8761 atgataaata ggcatataaa caaaatcagg atttaaactc ttaagttgag aaaccacagc
     8821 tctaaaatct ttatctcctg aattaataac aagttttttt ataattttcc caccattatt
     8881 cttaaaagaa ttttcaaaag ctcttgccaa acctaaagaa taaacattgc tttgatctat
     8941 gatgataaca gcatttttaa gtcctaaatc cttagataca taagtagcaa atttatctcc
     9001 ttgaaaacta tctttaaaac aaactctact tgcatatttc tttttatcta gcaatttatc
     9061 tccagatgcc actggagcta ttaggggaat ttttttctct tctgctatag aaatagcttg
     9121 aatggtattt ggagttgtag cttcaccaat aatcccaagg actttatctg ttgctattaa
     9181 acgattaact ccatttgaag tttcaagctt atctcctttt gtatctattg tgataagttt
     9241 aataacatct ccatttgaaa gttttggctg tagcttatta gccagttcaa ttccgttaaa
     9301 aacatcttgc ccataagctg ccacagttcc agttaaaggt aaaactactc ctatattaat
     9361 atccttagca tataagcaat ttaccatagt taaaacactt aaagttaaag ttagtttttt
     9421 catagtattc cttttaatta tagtttttac attttatttt agaaatatat tatgttttgt
     9481 tttttgcgca ggttcttctt caagaagatc ttttacttgc aaatcaagcg caaaatttcc
     9541 acctttaata taagcaataa tattatctat atcctcgtgg cttaaatttc tagcataaaa
     9601 agccatttga gaagctgttg tagaactgct actatcaaga gtataaccta tcaaagctcc
     9661 tttaatatcc tcaggagaca tatcttttaa aattctagat cctataacac tcttttcagc
     9721 attatctcca tggcaagtat tgcatttatt ttgaaaatac aaagccttcg ctttttccat
     9781 atcatattgc ttatttgcat caaaggtata agtaaaaaat gatttcaagt taataccaaa
     9841 aagcgcaaca acaaatattg aactaataaa caaccagcgt gcaatcatga ttttccttat
     9901 tttattgtaa tttctgtttg tgttttattt tgatatctat gtgttttttt gttgtatttt
     9961 ttttcttttt taatatcata gcgataacga acagtccctg aaacttctat atctttaaag
    10021 acttcatcta acggagctgc aaaaacaaaa tgatttaaaa tcataccaat taaaaatatt
    10081 tttttcattt ttattcttta aacacaaaaa aacgattata tcaaaaaaag ataatccttg
    10141 ttaatgacca cctttgtgta aaaaataaag tcctacacaa agagctaaaa tcgatccagc
    10201 aagaaaagcc atatccacag gagtagcaaa tttcatctgt aaaacccttt gaaagaaatt
    10261 taccactaag accataatga taacttttgc aagcttgtct tttaattgat ctaagctatg
    10321 cacctctaaa accttgcttt gttttgtttg tttaaattct tctatttcgc tgataaaaag
    10381 ctcataaact ccaaaagaaa aaataaacaa aactaaagcc ataagataaa gatcaacagc
    10441 tcctataatt aaagccacca catcctcatg caaatcgaca ttagaacctg catcaaaaaa
    10501 ataattataa gtataaaata taacttttaa aacatcataa cttgcaataa aaaacaatac
    10561 aaaagctcca attaaaccaa aaattacggg taaaattgta acaatacgac ttctaacaag
    10621 taaagattca aatattttct ctaacatttt tttccttatt tattttttaa ttctaaccat
    10681 ttttgcgcaa tacgcacagc atttgttgca gcacctacac gaatttgatc cgccacacac
    10741 caaagatgga gtattttttt atcatacaca tcagcacgaa ttcttcctac ataagtttca
    10801 ttagtatcgc tagtcattaa aggcataggg tattttttat ttttaggatc atctatgaca
    10861 ataacacttg gtgctttttt taaaatttct ttagcttttt ttacatctat ttctttttca
    10921 aaatgcatag taatggcttc gctatgactt cttaaaacag gcactctaac acaagttgcc
    10981 gaaacttcta aatttttatg taaaattttt tgagtttcat tgaccatttt aagttcttct
    11041 ttagtgtaat cattatccat aaaaacatca atttgtggaa taagattaag tgccaaagta
    11101 taaggaaaag tttgaggttc aaattcatca agtttaaaag caaaaaaact ttgcatagct
    11161 tcaaccaatt cttgcattcc ttcttttcct gctccacttg cagcctgata ggtacttaca
    11221 tcaacacgct ttaaattaaa tgcatcattt aaaggtttta aaacttgcac catttgtata
    11281 gtagaacaat ttggattagc aataatccct gtttttttcc aatctttaat atcctcagga
    11341 ttgcattcag gaaccaccaa aggaacatct ttttccattc taaaatgact tgtattatca
    11401 ataacaacag caccagattc tactgcaaat ttagcatatt tttcactcac acttgcacct
    11461 gcgctaaaaa aagcaatatc aataggattt tctttaaata cattttcggt aagttctttg
    11521 actttataag ctttgccttt aaattctact tcactaccta cactttttgc acttgctaaa
    11581 ggtaaaatac tttccactgg gaaatcaagt tcatctaaaa catttaaaag ctcttcccca
    11641 accgcaccag tagcacccac aatggctatt ttttgttttt ttgacattac ttatccttta
    11701 tttgatattt tttaattttt tcatttaaaa tttttatatc catacctaaa atttgagaag
    11761 cttgatcctt gtcataatct acacttaaaa gaacttcaca aatcaattct ttttctaaat
    11821 tctttacatc tttttttata cttctagctt ctaagaacaa atcttcactt gaaatttcat
    11881 cattttcact taaaatacaa gctctttgta caacggatat taattctcta atattaccag
    11941 gaaaatcata ttcaagtaaa gcatttttag cttcttggct gagctgtttt tccttaaaat
    12001 catattcttt acaagtatct tctaaaacct tttgagctat acctaaaatt tcttctttac
    12061 gctctcttaa aggcgggata ttaataggaa cagtgtttaa acgataatat aaatctgaac
    12121 gaaattcgcc attttttatt ttttcatcta aatttgcatt agttgcactg ataattctta
    12181 catctatttt gatgcttttt gtacttccaa gtcgtgtgat ttctttttct tgcaaagctc
    12241 ttaaaagttt agcttgaatt tcataaggca tttcgccaat ttcatctaaa aacaaagtgc
    12301 cctcattagc catttcaaaa agccctattt tagttgcatt agcatcagta aaagcacctt
    12361 tttcaaaacc aaaaagctca ctttcaatca aatttgcagg aatggctgcc atattaatag
    12421 caataaaagg cttattagag cgtttagaat gggtgtgaat ataacgagaa aatacctctt
    12481 ttcctactcc actttctcca aaaaacatta cagaggcatc agttttagcc gctttttgac
    12541 ttaaatttaa tgttttttct aaattaggag aagttgaaaa aaaatcttta ttttcttctt
    12601 ttttttcatt ttttttgctt tttttatcgg ctgttttttc tcttatgatt ttagcacgct
    12661 taatagcctc gactaaagta tcaacatcaa aaggcttggt taaaaaatct tttactccca
    12721 aacgaaccgc ttctatagca cggcttaaag tagcatttcc tgtcataata ataaaatcat
    12781 atttattttc acaggcttta acaaattcta tgccatcaat tc
//
LOCUS       DARGED010000036        12821 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.036, whole genome shotgun sequence.
ACCESSION   DARGED010000036 DARGED010000000
VERSION     DARGED010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12821
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.036"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(43..978)
                     /locus_tag="SFZ84_000827"
     CDS             complement(43..978)
                     /locus_tag="SFZ84_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG8202959.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGFEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDKNK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            1049..2281
                     /locus_tag="SFZ84_000828"
     CDS             1049..2281
                     /locus_tag="SFZ84_000828"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG8202960.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            2278..3363
                     /locus_tag="SFZ84_000829"
     CDS             2278..3363
                     /locus_tag="SFZ84_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG8202961.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(3360..4145)
                     /locus_tag="SFZ84_000830"
     CDS             complement(3360..4145)
                     /locus_tag="SFZ84_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8202962.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFDK
                     GILVQPSFLGVDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKINEQAVKFAKKIYEILKEHFPLSNFVFGSD
                     WPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(4156..5448)
                     /locus_tag="SFZ84_000831"
     CDS             complement(4156..5448)
                     /locus_tag="SFZ84_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG8202963.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVILKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(5567..6571)
                     /locus_tag="SFZ84_000832"
     CDS             complement(5567..6571)
                     /locus_tag="SFZ84_000832"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG8202964.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(6581..7534)
                     /locus_tag="SFZ84_000833"
     CDS             complement(6581..7534)
                     /locus_tag="SFZ84_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG8202965.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPHLSFFENKNATLMALIIGIIISSIVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(7521..8213)
                     /locus_tag="SFZ84_000834"
     CDS             complement(7521..8213)
                     /locus_tag="SFZ84_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG8202966.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(8374..8943)
                     /gene="efp"
                     /locus_tag="SFZ84_000835"
     CDS             complement(8374..8943)
                     /gene="efp"
                     /locus_tag="SFZ84_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG8202967.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            9057..9377
                     /gene="rnpB"
                     /locus_tag="SFZ84_000836"
     ncRNA           9057..9377
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SFZ84_000836"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(9375..9650)
                     /locus_tag="SFZ84_000837"
     CDS             complement(9375..9650)
                     /locus_tag="SFZ84_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202968.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(9631..10017)
                     /gene="fliS"
                     /locus_tag="SFZ84_000838"
     CDS             complement(9631..10017)
                     /gene="fliS"
                     /locus_tag="SFZ84_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG8202969.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(10029..11957)
                     /gene="fliD"
                     /locus_tag="SFZ84_000839"
     CDS             complement(10029..11957)
                     /gene="fliD"
                     /locus_tag="SFZ84_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG8202970.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSQGLANDGGFVNAKLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYKSDSEA
                     EKIFKSLGWELDTTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(11960..12325)
                     /gene="flaG"
                     /locus_tag="SFZ84_000840"
     CDS             complement(11960..12325)
                     /gene="flaG"
                     /locus_tag="SFZ84_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG8202971.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(12482..>12821)
                     /locus_tag="SFZ84_000841"
     CDS             complement(12482..>12821)
                     /locus_tag="SFZ84_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG8202972.1"
                     /translation="ILLDKKEKIEQSFDKLLEFKKHFRILVFLDAENKLENSYMLVWR
                     VVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRAWPKQTDCTKSVIEDLILRNILENN
                     PDLFNKFEIF"
BASE COUNT         4425 a         2279 c         1689 g         4428 t
ORIGIN      
        1 ctagattaaa ctaaaataaa aatttagccc aaaggctaaa ttttaaagca cagaaagaat
       61 tttcacagcg tcatttaacc ctgtaactat acttgctcca tttttagtag caatatctcc
      121 tgctacaaag atgcctttaa cattgctttg tttgttttta tccattaaag gcacgccttt
      181 atcatcaaca ttaatcccac atttttgtaa aaaatcaagt ggagtagaac caccaatagc
      241 ataaatgatt ctatcataaa tatcgcttgt accatcggta aaatttactt tagctttgcc
      301 attatcatct tctacttcat taatgtcaat tcctaatttt aactctacct tacccgaatt
      361 tccagcttcg tgaatatctt taagatttat atcatttaat cttgtaaatt cttttttacg
      421 ataacaaagg ctaacttgat ttgaatttgc caaatccaca gcgtattctg ctgctgaatt
      481 tccgccacct acaacaagaa ttttttcatt tcccaaaact gaattggcat taaaattaat
      541 gatttttgtt aaagtcatag gaagtttgta atcaggttta ttaggtttac ccattctacc
      601 tatagcaaca ataatgtttt tacactcata aacaccttta gctgtactta ctaaaaaaac
      661 tccattttca tttttaacgc tctcaacttc aaaaccaaat tcaacttcta tattgtgctc
      721 ttttaaagcg ttttgaaaag tttctatagt gctttctttg gtgccatctt caaaaggaac
      781 atgtccgtga ttggttcctt cgcatccctt ataagcttta tctactcttt tgccatcctt
      841 ataaaattgc attaaagttt gacaaatgtt atttgatttt tctagtatca aaacttcttt
      901 gtttttaagc ttggcttcaa ctgcacagcc tatccctgtt ggacctgcac ctactacaat
      961 taaatctatt tttttcattt atatttacct ttcaattcta aatttttttg tataatttat
     1021 caagtttttt gtaaataaag gattaaaaat gcgaaatttg cttgaaaata ttaagaaaaa
     1081 ttctcaaaaa ctacttaact taacgcccaa agataaagaa aaaattattc taaaattagc
     1141 tcaaatttta agagaaaatt tcaaaattat cctagaagca aataaaaaag atatggcaaa
     1201 tttcacaaaa agcggagcaa tgaaagatag gcttttgtta gatgaaaaac gtattttagc
     1261 tctttgcgaa ggcctagaaa aaatcgctta catcgaagat cctataggca aaatttctaa
     1321 aggctggaaa aattatgcgg gtttaaacat acaaaaaata agcattcctt taggactcat
     1381 ttgtgttatt tacgaagcaa ggcctagtct tagcgctgaa atcgcagctt taatgataaa
     1441 aagttccaat gcttgtgtat ttaaaggcgg aagtgaagca aaatttacaa atgaggctat
     1501 atttactctt gttaataaag tacttaagga atttgatttg caagattgtt ttgctatgtt
     1561 tacccaaaga gatgaaatct tgcaaattct agcctttgat gatttaatcg atgtgatcat
     1621 acctcgcgga agttcaaata tgatacaaga aattgcaaac aataccaaaa ttcctctcat
     1681 taagcaaaat aaaggcttgt gtcatgcttt tgtagatcaa agtgctaact tagatatggc
     1741 tttaaaaata atccttaatg caaagtgtca aagagtaagt gtttgtaacg ctttagaaac
     1801 gcttttaatc catgaaaaaa ttgctaaaaa ttttataagt cttttaatac ctgaatttga
     1861 aaaatttaag gtaaaaattc acgcccatga aaatgctttg gcttatttta acaactcaaa
     1921 tttagaaatt tttaaagcaa atgaaaatac ctttgataca gaatggcttg attttgcttt
     1981 aagtgtaaaa ttagtaaaag attgcgatga agctatagag catatcaata aacacagctc
     2041 cttgcattct gaaaccatta tctcaaatga tgcttcaaat atcgctaaat ttcaacgcct
     2101 tataaactca tcttgtattt atgctaatgc ttcaacgcgt tttagcgatg gaggagaatt
     2161 tggctttggt ggagaagttg gaatttcaac cagcaaattg catgcaagag gtcctatggg
     2221 gattgaagat atttgcactt ataaatatat aatcaatggg gaaggacaaa ttcgagagtg
     2281 aataaaatag aaatactaaa gcaacacttt aaagaaattg ctaaattaaa ttcaagcgaa
     2341 caagtttggc aaatgccttt ttttgcggct ttaggcgtag gtatagtttt agggcttagt
     2401 gtattttttg gaaaattaaa ctatggactc attgccatga taggagcttt gtctttttta
     2461 tatgttccaa acactccttt atatcataga atggctgttg tgatgtgctg ttcttttggc
     2521 atagtttcta gttttttctt aggaatttta actcattttt tgcctgcaat ttttgccttc
     2581 atccctatag gaattatggc catgggaagt tctattttaa ttagatacta taacattggt
     2641 gcacctggat attttttctt tgtattttct tgtgttttag gagcctattc tccttttgaa
     2701 gctaaggatt ttatcttttt agtaggtctt gtttttcttg gagcaatggt agctaattta
     2761 atggctttgt tatattctat cgttgtgatt tatggattta aaaatgcttt acctagcgaa
     2821 attccaccta gagaatacat aggttttgat gcagtttttg tggattcttt gatcatgggt
     2881 tcttttgtgg ctttttctat atttatagga acttttttag aacttgaaag aagttattgg
     2941 atagccattt cttgtacagc tattatgcaa ggtgtaactt taaattctat atggattaaa
     3001 caaattcaac gcatcatagg aacggcctta ggagtatgtt ttgcatggtg gcttttatct
     3061 aaacaatttc acgatataga gcttatttta cttatgatgt ctttgttttt tataggacaa
     3121 tttttagtca atcgaaacta tgctttagct atgattttct ttactcctta tgctacttat
     3181 ctttcggaag cagctaattt tatgagtgaa aatgcagata aattaatact cgctcgttta
     3241 attgatgttg taataggaag cattttaggg cttttaggtg gttttgtgat ttacaaacct
     3301 tatctaagag tgcattttga acgcattgca aaatacatct ttaggataaa acaaaaagct
     3361 taaaagccaa ataaagcaca agcattatcc cctaaaattt gctcttgttc ttttttagat
     3421 acgacaactt cattaaaagc tactagagcc gatgaaaaat taacatttga ttcaaaattt
     3481 gtatgtggcc aatcgcttcc aaaaacaaaa ttgctaagtg gaaaatgttc ttttaaaatt
     3541 tcatatattt tctttgcaaa ttttacagct tgttcattta tttttgctct ataaaaaccg
     3601 ctaattttaa aaaatattct agagtttttt aagcaaatta aatcctctaa atttgttaag
     3661 tttgcattag ctcttgctaa atgatcgata acaatattac aaccataagg aattaaattt
     3721 tcaacaatat caacaagatt attatctaaa tctctttgaa tttctatttg cattttaagc
     3781 ttacttaaat tttcaaaaaa ttgagtccaa accatacttt taaaatttgg caattctttg
     3841 ccaattaaat ttaatctaac tccacaagct tttctttctt ttagtttttt aagctcatca
     3901 aatttaatat tttcatcaac cacaactata gcttttatat tttcatcttt ttcgatactc
     3961 tgaagtaaaa attcattatc aacacctaaa aaacttggct gaactaaaat ccctttatca
     4021 aaatcataat gatctaaatt tgccttataa tctttaaaac tagcgtcata atcaggttta
     4081 tatcttgcat ttgcaaccgt atttaacttt ttcaaaaata tatgtgcatg agtatcaatc
     4141 ttcattaaat tatccttata aaataaaact cattataata gtggctaaaa tcgccgctat
     4201 aaatcctata ggcacagctt taataagtaa atctttaaat aatttttcct tatatttgtc
     4261 aggacaagat cctaaaatta gacttcctcc agaagaaaaa ggagaaatag cagaagcttg
     4321 agcccctaca acaatacaag aaaaaagcaa tgcctcgctt aatccactgc ttgcagcaat
     4381 gcttggaact ataggaaaaa gcgctggagt aaccacaccc aaagtacttg aaaaaagcga
     4441 cataaaagct gcaatagcac acattattaa cggaataaaa atcacattga tctcattttc
     4501 tacaagatct gaaaataatt ttataacccc tgcttcaact gctatgctaa ttaacatccc
     4561 tactccacaa atcattatca aggttcccca aggaattaaa gcaacaactt gtttctcatc
     4621 agctaatttt aaaaataaag caatggcaac aaaaatcatg gctatcatgg ctatatctat
     4681 ttttttatta aaataactaa ttgtctcatt atgtggaaaa ataatattta gcacaggaaa
     4741 gattaaaaca acaacaatca tcataaacat gagaattaaa gtagtttttt gtttataatc
     4801 aaatggatca ggttttaaaa taacactaat ttttatatta tttttaaaag cattaaacac
     4861 aaaaaaagat aataccacaa taggcaagat tatagtaaaa gcaaaaataa tactagaatt
     4921 tacaaaagct tcatttgctt caatgcctga attttccatc aatcctcgaa aaataatccc
     4981 gctttgagaa gtcataaaat ttgctcctcc caaagcacca taatttatag ccatagctcc
     5041 agcaattttg cttaaaccga ttttatcgca aagtaaaaaa gtaagtggtg ccataaaagc
     5101 taaaactgta taaaaacctg ctcctaaagc agctataata gcactaacca caaaaataac
     5161 aaaaggaagc aaataaggat gattagcaaa acgatacatc aaatgtccag ctaatttttc
     5221 aagagttcca tttacggttg caaaattata aaacaatgag acagcaaaaa taacaaaaaa
     5281 tatagaaata ggccaaaaag ctatgatttt tttaggagct aaatccataa aaaaagctcc
     5341 tataatataa gcaaaaatca tagcaaaaat tccaacatta tgtctagtaa tatagcccaa
     5401 aataatagcc actataatac tagagatgat taaaaaaacc attatcatcc tttaaaatat
     5461 tatagagctt ataatatcaa aaaatatatt tttcaaagca taaaaacaaa atctaaattt
     5521 aaaaaatatc tatttagcaa caaatttact catcttatga aattttttat aaaatatcca
     5581 catccagagc aagcaaagca aagcttccta gccaatgcga cccaagataa tcatcttcta
     5641 tatgagctat agctttatca aaatgctctg tagcattgtt tcttaaaaga atttttaaat
     5701 tttcatcgca aaaatttgaa agtattttaa aacaccaagc acggcttaaa tttaacccat
     5761 ctaaatgtgc tattttacca tcgctcctat cactcacact cacaggggta aataaagttg
     5821 caggctcttt tgcttctaaa tttggcaaat atgctttaaa aaattttaca aaatcatttt
     5881 tatgtaaaac agcacttaaa agcaccgctt ccatcaaaac aggagataaa aactcatctc
     5941 cacaaggctc taaagcttgc atatttttat catttaaaaa ccacttttta gcactttgga
     6001 tgatgcaata ctccaattct tgatcttttt taaatcttgc atattctaaa gcaaaataca
     6061 aagcaaaaga gctattaaaa tgggttccaa ctcgtatagg ataatccatc ttaggtaaaa
     6121 actccttaaa ttctttaaca aagaaatcag ctatgccttc taaattttta gcccaaattt
     6181 cagctttgtc attttcttta gcaagtaaat ttatctccaa agtcagtttt aaaaaccatc
     6241 cccatccata aggtctttca aaacctttgt gtgcagggtt ttgaagatat ttaagctctc
     6301 cttctgcttt ttctttgcta aattgagaat ctagagcttt gatgatttca tcctttggag
     6361 caaaatgaga aaaatctttt aaaattttca ccaaaagcca gtgagaatgc acgctagaat
     6421 gccaatcata agaaccataa aatataggat acataagttt tggcggttta atatcattga
     6481 tatcattaaa agaatgtgtg attttatttg gcaattctct aaaaatattt tctagtgcaa
     6541 taaagctaaa ttgttttata aatttttcca ttatttctcc ttaaaatcta aaagctaaaa
     6601 aatacattaa aaagatatta gctacaagca aaacaagtcc tgacataaac tgggctttaa
     6661 ttacgccatt tttatcatcc aaatttaaaa gtgccgcagg aactatatta aaatttgcag
     6721 ccataggcgt cattaaagtt ccgcaaaatc cactaagcat tccaatcgca cctataatag
     6781 caggatttgc atgcatttgt atgattaaaa tcggcaaagc aatagcagca gtaatcacag
     6841 gaaaagctgc aaaagcattg cccattacta tagtaaaaag cgccatagcg atacaataca
     6901 cagctactgc aataaaagca ttatccaaac taatataact agataaaagt ttagatactt
     6961 gatcgcccat tcctgtagaa acaaaaacta ccccaagtgt agccaaaatt tgcggtaaaa
     7021 gcgccgccca actaatgtga tccatagtat gtgctgcatc tttaacagct cttttaggag
     7081 aagccttaaa cataaaacaa gcaactattg aagaaataat tatacctata atcaaagcca
     7141 tcaatgtagc atttttattt tcaaaaaaac tcaaatgggg aaataaaaaa gtcccaataa
     7201 gtgtaatcaa aggaaccatt aaagcaggaa taaaaagttt atttttataa atatttgcat
     7261 gttttatctc gtattctttt tcttctttgc taacttcgat ctttgctggt tttaataaat
     7321 taaaccctgc tataagtgct agtaaaatca ctatacaacc catcacaaaa tgaggcaaaa
     7381 ctcctgctag taaaaaagta aaactataac ttatccaaaa taccccgccg cttattcttg
     7441 attttatatc tttagcttga ttagaaaaac ttaaaattcc aaaaactaaa aataaaattc
     7501 ctacaatata ataaagtaaa tcaagactta tcatcactca accctttata agttttttcc
     7561 aatcttttat caaataaata aagtctagag caatggataa ttaaagccaa aattccagtt
     7621 ggtatagccc aaactgataa atgcaatggc tcaacaataa taccattgct ctcataaaaa
     7681 gctttaataa ataaaataga atgcacggct ataaaaatat cctctccaaa aaatacagca
     7741 acattatccg ttcccgcaga aaaagctttg attttttgac tatctttatg tgttaagttt
     7801 ttaaatttaa gcttagctgc agcttctgcc ataggggcta ttaaaggtct tatcatctgc
     7861 gcatgtccgc ctaaagataa aagccctaaa gctgcagtaa cttgtctaaa aacaaaataa
     7921 cacattaaaa ttcgtcctgt actggcaact tttattttgg atattaaatt tttagcctgc
     7981 tctcttaagc ctttgcgttc caaaacagca agtaaaggta aaataagcca aattatagca
     8041 acatagcgat tatctacaaa agattttcct atatcactaa caaccttaac aaaatcaaaa
     8101 cctgaaacaa gtccagcata aattccaact gaagttacca ctaaaaaggg gttaatcttt
     8161 aaagcaaaac ctaaaacaat caaaggtata gaagcaagaa gtaaccattc catcaaccat
     8221 ctccacaata tgaattagaa atattataga aattttaaat tgaagaaaag tttaaaaaaa
     8281 tatttttaag aatggaatga gaaattaagt aacaaaataa attttatata aatttaaaaa
     8341 aagccttgga atagtccaaa agcttttttt gtattatttg ttcgctcttt ctatatactc
     8401 accacgcaca gtatcaacgc gtataacttc accttctaac acatgaaaag gaatttgcac
     8461 tactgcgcct gtttccaatg tagccggttt tttatttgat ccttgagtat cacccttaaa
     8521 atttggagct gtttcgatga ttttgagttc aacaacttgt ggaacttcta cgccgatagc
     8581 tttaccatta tggaaaagca catctaccat cataccatca agcatccatt ttttcgcctc
     8641 acctacatca tcatcactaa tagctacttg ttcatatgtt tgcgtatcca taaattggca
     8701 attttcacca tcatcataaa gatactgcat agttttatct tctaaatttg gagcttcaca
     8761 tttatcacct gcatggaaag ttttttcaag tactttacca tcaataaaag atttgatttt
     8821 aatacgcaca aaagcaggac ctttgcctgg ttttacatgc tgatactcga ctattttaaa
     8881 aggaattcca tcgatttcta ttttaagtcc cttttttaaa tcacccattg aataagatgc
     8941 cataaatttc ctttgttaaa aaataaaaaa caattttatc aaattttgat tgatatcaca
     9001 ataaaattat tttatttgat gaaaaaataa gtaaaattac gttaaaatcc aaatttaaag
     9061 catagtaaat gctcgcttct ttttaggaga ggaaagtccg agctgctaaa gacaaacatt
     9121 ccatctaaca gatggctagg gtaacctaag ggatagtgca acagaaagaa aactaccacg
     9181 caagtggaaa aggtgaaacg gcggggtaaa agcccaccag cgattttggt aacaatttcg
     9241 gctatgtaaa cccaatgtgc agcaagaagg gatggttagc gtctttgttt taacccttcg
     9301 cttgattttg tttgcaaaaa caaaactaga taaatgagca ttcaagacag aactcggctt
     9361 atcgctatgc ttttttaaga tttaaaatat gtcaacgctt tttgaaattt ttgaatttca
     9421 acagcttttg tttttttctt ttgttcaatc agtataacag cttcttgcaa aagagcttga
     9481 acttgataga atacatcatt tgcattttct tttaaaaaat cttctgaagg cgattctttg
     9541 gctaaatttt taataaaagc tttcatatca agttcatcaa gtaaattttc aagtttattg
     9601 acatcttctt ggattaatgc aagtttaaaa tcactgagcc actgtttcat tgttatgcac
     9661 ttctctccaa gcttctagca aacctttggt tacatttata acttcattga ttctatcttc
     9721 gttattttct aaatttgcca aagataaaag ttgaatttct cttgtataaa gcccgcttaa
     9781 ataatgtgcc acttctccgc ctttttcata gtttaaagta ttaataagct ctataaaaat
     9841 agccgtggtt ctttttacaa aatacactct ttgttctata tcttcatttc ttatggccac
     9901 tttagctctt gcacaaaaac gcaaaattcc ctcataaagc atttcaataa gtttttgcgg
     9961 ggactctatc cccacttgat tttgagaata agcattatag gctaaattat tttgcatctt
    10021 ttttatcctt aattattaga attgtttgcc gcattaatca tattagtcac agtatttagc
    10081 tgttgattga gtttatttaa aatactctca tattgcaacc attgattcgc cattgtatca
    10141 tatcttgtat caatcatagc ctgagtcgag tctttagagg tatttaatga tttaatatca
    10201 tttgtcaaac tctcatcata ttttgtaatt gaaccatctt ttccagtcat ctcttgcaac
    10261 gtggctttta attttgaaaa aataccttta ccttctatag gcttagaggt tatatttacg
    10321 tcagacaaac ctaattcctt gagaatgtta gcatctcctt tgattgaaaa atccgagcta
    10381 ccatctccac taaaattcaa cctaaaccct gtaacattgt tttgattata ggattcaacc
    10441 ttaactttta agccttcaat acctttactg tttatatgat tagctaaatt ttgaagcaat
    10501 tcttcctctg ttttccctgt taatttaaaa ttagtaccat cagaattttt agataaatca
    10561 tatgtttgat tattaaaaac tatagtaaaa tctcctggtt taaattctaa accattagta
    10621 ttacctccat tggaattaag atatttactt aaacttcctg tcttaattac ctctcctgtg
    10681 tgattaatgt cttcgtattt agtaatattt gaaaaaaaac tttcagtaga gtctggatct
    10741 tctttaactt tttgttcaaa tttagaagaa tcaaaactca aagtgcctgc atcatttaaa
    10801 cttaagccaa aatcctgcat agaaagcata accttagtgt ttactttatt accatttgca
    10861 tcttcagtag ttccatcaac aacttgagaa tcaaacaaat cagcaagaat gcttgagcgt
    10921 attgaattta cttcactgat gccttgtaaa gttccttttg ttccagtttc actattatag
    10981 tcagttgcag cattaagatt ggttactaaa tcattataag catccaccaa atcttgcatg
    11041 gcttttgtca caccttcaaa atcttgctgt acatcaaaat taatttcacc tgttttattt
    11101 aaagttaaag tcattcctac accaagatcg gtaacagtat tacttgatct aaacatctta
    11161 ataccatcaa gtgtgaattc tgcattttgc gcagtttgga tatgcaaaga agcatcctta
    11221 ataccataac cttttttatc cttagctgga tcaatagaac tcgttgtatc taattcccat
    11281 ccaagacttt tgaatatttt ttctgcctct gaatcacttt tatactgacc ctgcgcatct
    11341 ttttttcctg catagaaact tatcgcactg tcttcgcctg tttctttact ggttaaagtt
    11401 aagcggtaag gagtaccttt ctctcctgtg tttacaatct tagcgacaat ctctcctcca
    11461 ctagcttcat taattttatc agctaaatct ctataggttg tgtttttatc taccgtaaca
    11521 gtatattctt tgccatttga aaaaaaagta agatcggcag ttccatttaa ttttgcatta
    11581 acaaaaccac catcatttgc caatccttga ctttgatata catctttttg tgcaagttga
    11641 gtaacattga tattcatgct ttgtaaagca acacccgaat taaccgtaag acttgctgga
    11701 ggattatcgc taatacttcc tacaactttt cttttcgcaa aaaccgtagc atcggctaat
    11761 gatgaaacag ccgtctgaaa acttagtaat ttagttttga tttctgttaa atctttttgt
    11821 ttggttgtat tttcttcaat ttttttagta taaggatcaa tacgagcttt ttgctctgct
    11881 tcttttaatt tatctatagt atcttgagtt aaaaccccag aaccaaatcc taaactagat
    11941 agactaccaa atgccatttt taactctcct tatcaaatat cattcctatc acatccctaa
    12001 aatactcagc taatctcata gcttcttcac taggaatttg acggatttcc cttccagtgc
    12061 ttttttcagt cacgctaata tacatagaac cgattttatc actataacca aaacgaacat
    12121 tggtatctag agaatccatt tgctcattta acttttttgt aatatcagcc aacttttcac
    12181 tcacacctcg ttgctgtcca tcatcgcctt cttgaccttg acttctatcg gtttgaatgt
    12241 ttaaactagc ctgtgtctca cttgttcttt ggctaatgtt tgccaaagct gtatccattt
    12301 gcccatttgc cttcgatatt tccattttaa aatccttttt aaaatttcct attgctagtt
    12361 aaaagcttat atcgacaaat ttataaattt atgaacacct ataaagaaaa ttttattttt
    12421 caataataaa aaaataataa gcaaaaactg tgccaaaatt ttaaaataaa tctcaattat
    12481 cttaaaaaat ttcaaattta ttaaaaagat ctggattatt ttctaaaata ttacgcaaga
    12541 tcaaatcttc tatcacgctt ttagtgcaat ctgtttgctt aggccaagct cttaaataac
    12601 cctcagcttc acctttagca cttgcatcta ctccaagtct ttcttctttg ataaaaatat
    12661 ctcttttagc atctatatta tttaccacac gccaaacaag catataagaa ttttcaagct
    12721 tattttcagc atctaaaaac actaaaatcc taaaatgttt tttaaattct aaaagtttgt
    12781 caaaactttg ttcgattttt tcttttttat caagcaaaat a
//
LOCUS       DARGED010000037        12574 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.037, whole genome shotgun sequence.
ACCESSION   DARGED010000037 DARGED010000000
VERSION     DARGED010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12574
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.037"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..460
                     /locus_tag="SFZ84_000842"
                     /pseudo
     CDS             1..460
                     /locus_tag="SFZ84_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            390..2310
                     /locus_tag="SFZ84_000843"
                     /pseudo
     CDS             390..2310
                     /locus_tag="SFZ84_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2332..3765
                     /locus_tag="SFZ84_000844"
     CDS             2332..3765
                     /locus_tag="SFZ84_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEG8202973.1"
                     /translation="MSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGNTVT
                     ITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNNIFL
                     VNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIINLGK
                     INADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEVIIQQS
                     ITSFEENGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKFRTA
                     FDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFGVVQ
                     NSYIRNLNIQGLKIASTGYDAYVGGIVGQNIANSYTGFENVTVNDLVINTAVNTKVGG
                     IIGWGNGSGGNNTINFTNVAINNISIVAKEGSYVGGIGRQIDGGNFNNVVVNDIEKLI
                     TSGNDSKTGGFTGKVGNLKINNAYLFL"
     gene            3921..4956
                     /locus_tag="SFZ84_000845"
                     /pseudo
     CDS             3921..4956
                     /locus_tag="SFZ84_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4966..6482
                     /locus_tag="SFZ84_000846"
                     /pseudo
     CDS             4966..6482
                     /locus_tag="SFZ84_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            6501..6644
                     /locus_tag="SFZ84_000847"
     CDS             6501..6644
                     /locus_tag="SFZ84_000847"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202974.1"
                     /translation="MDAMGIQILYTRSANFYVKMDAARAVHRFKHDGEHRARVYASLE
                     KYF"
     gene            7152..8664
                     /locus_tag="SFZ84_000848"
     rRNA            7152..8664
                     /locus_tag="SFZ84_000848"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            8767..8842
                     /locus_tag="SFZ84_000849"
     tRNA            8767..8842
                     /locus_tag="SFZ84_000849"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8800..8802,aa:Ala,seq:tgc)
     gene            8851..8927
                     /locus_tag="SFZ84_000850"
     tRNA            8851..8927
                     /locus_tag="SFZ84_000850"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8885..8887,aa:Ile,seq:gat)
     gene            9462..12368
                     /locus_tag="SFZ84_000851"
     rRNA            9462..12368
                     /locus_tag="SFZ84_000851"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         4413 a         1858 c         2610 g         3693 t
ORIGIN      
        1 atgatttata ataaccctaa atctggaaat aaaaatttat ccaagcttga aattttaact
       61 ccggatactt taaaagaaga gatcacacca gcttttagca ctttagaaac cgtattttca
      121 gatactcaag ctgttcctag ttattttatg ccttttattg taacagctta tgctcaaaat
      181 acaaatgcaa caaataataa acttatatta taaaatggag aattgtcttc tgtgtatttt
      241 tgcaaaccaa gcatagggga ttgtggagta cctaataatt ctcaaaaagg cgatcgtttt
      301 aagtatttaa ttactgcggc gtttactgac aggcgggggg gggaaattta acaatcaaac
      361 cattttaaaa gaaaactcct atattaataa tgggtgtaga aaatatctac accttgccct
      421 taaatggagc tccttatatt tcaggatctg tagcttttga tggtgaagct aaagacaata
      481 aattaatctt agagtcaaat acaaaaattg accttcataa ttcccagtat ttttcagatg
      541 aagaaggtaa ggatatttat gatgaaagaa ttactcgttt aatgggagct tttggcataa
      601 attctaattt acaaaacaat aaagttctta tcgattcagc caatatcgtc cttcatgggc
      661 cagatggtga gtatacagct cgttcgacct ttgaaatttt aggtacttta gctgatgtaa
      721 ataatcttaa aaaatacaat gtaagtaaaa attccgtaat aattaaaaat ttaaatttag
      781 atttaatggt aaattcgcaa aataaaataa ctttttatga tgctgtttta tttggagaaa
      841 tttatggcgg aagaacatta cagggtaatg cagagaaaaa ttctatagaa gtttatcatt
      901 ttaactcatt agatcatctt gataaaaaca ttaaaacaca tgcatcgtta aacctctatg
      961 gtgtgtattc taatgatggt gaagctaatg gaaataaaat tgtatttcgc cttaaaaaac
     1021 ctttaaaaat cagtgataat ttttatggaa aaaattatca caatctttac ggaggttttg
     1081 ctacggaggg tgcgaatttt aatgttattg atatacaaaa tgatttaacc tatgaaaaag
     1141 ttccacaaaa ttattttgat aaatttaccg tatatgtggc aagaacttta agtggaaaag
     1201 caaataataa caccttaagt ataaaagatt ctgttatttc attgccttta tatgctttta
     1261 ttacaagtga aattacgcta gatggtatag actatatcgc tgatgaatca aacaataatg
     1321 aagtaaattt tgaaaatatt aaatcatcta aaaatttaag tttgatgatc aatgctaaaa
     1381 atgtttcaaa taataaaata aattataatc tcattcagag tctaatcgaa gcgagttctt
     1441 taggaaaggg tttaaaaatt attttaaaag cagctcaaaa tgcaaataac aaccttataa
     1501 agcttaaaga ttgttcttct ggaaagttcg tgcatcataa aagcagataa agaaagtgct
     1561 tttaataaaa tcatcatcaa caacacagtt tttagtactg cctcagataa aagacaaggt
     1621 tatgcggagt tgatagctgg agtgtctgca aattctcatg ataatatcat ggagcttgtt
     1681 aatttaaata tagatgagta taaaaatcaa gatgctatat ttttagctct atctggaact
     1741 tcggatattt caaattttaa atcttataac aatactttat atttaggtgg agagttaaat
     1801 ttctttaaag atgtaaatat cgatttgctt tctggttctg tttttcatga agtaaataaa
     1861 aaaggcaaaa taatcactca aattctaccg catcaagaag atttttctaa aaataatcgt
     1921 ttgattatag atactcaaga tgtcaaatca gaagtggtaa ataactttga aaattttact
     1981 tttattttat caaataaaat aaaaaatcct atcttgacta tagaaaaact tataaatctt
     2041 ccttcaaatg gaagtatgga aattcttact aaaaataaac caacaaaagg aaaatatatt
     2101 ctcatacaaa gtgatgttgg aatttatgat ggtgacaata gattgttaaa tcaacaagaa
     2161 ttagaaaatt tgttagaaaa aatgaaaaat aataaaaata aatttaatta caacaagata
     2221 gaaaagttgg ctaaaagtac attgaaaaat gtaaatttta gctttgaagt ttcagatgat
     2281 gcaaaaataa tttatatcaa catactttaa aggagagtaa catgaaaaaa gatgagtaaa
     2341 catatagttt tatcatttgc ggtgagttct ttgctctttt ctcaagctta tgctttgcca
     2401 caaggaggta aattcactca tggtacaagt gggactatcc atacctctgg caatactgta
     2461 acgattacag gaaaaggaca aaatcatgtt atccaatggg gtggcggttt taatatagga
     2521 caaaatgaaa gtgtaaattt taacggcaaa aatcaaaact acctaaacat tgcttatcaa
     2581 aaagatgctt ctaagataga cggagcttta aatagaggga ataacaatat ctttttagtt
     2641 aatcctatgg gagttttgat tggcaaaaca ggaactatta ctgcgggaaa atttgtagct
     2701 agcacaacag ctttaagcga tgataatgtc aaaacttttt tagagaaagg agctagtttc
     2761 tctccggcat ttgatgtaag caaacaagga aatattataa atcttggaaa gatcaatgca
     2821 gataatattg ttttaatagg aaataaggtt gaaatcaata aaggaaaaat tactttggat
     2881 gtattaaaac ttgaaggtaa taaagtttat gttgatgctg gagtggtaaa agatacaaaa
     2941 aatatcgtag ccaaagcaga gcaagaagtt atcattcaac aaagcataac aagttttgaa
     3001 gaaaatggag ctttattggg taattctagt agtaaattta gttttgatga tagtagtaaa
     3061 gttaaaaact ggactaaata tggaagtatt gcggatgcaa cagaatggaa taaatttgct
     3121 gatttttgga atgtaaataa agaaaaattt agaacagctt ttgatcattt tcgtttgatt
     3181 gatgatattg attttagtgg cgtgaaaaca tacatagtag gtgataatac aagcaatgct
     3241 tttgctaaat ctttcgatgg ttctggttat gctttaaaaa atgttaatat taattcatca
     3301 aatcaatatg tgggaatttt tggagttgtt caaaatagct atataagaaa ccttaatatt
     3361 caaggattga aaattgcttc aactggttat gatgcttatg ttggaggtat agtagggcaa
     3421 aatattgcaa acagttatac gggttttgaa aatgtgactg ttaatgatct cgttattaat
     3481 acagctgtaa atactaaagt tggcggaata ataggctggg gaaatggtag tggagggaat
     3541 aacactatca attttacaaa tgttgctatt aataatataa gtatagtagc aaaagaaggt
     3601 tcttatgtgg gtggcatagg cagacaaatt gatggtggta attttaataa tgttgtggtt
     3661 aatgacatag aaaaacttat aacttctggg aatgatagta aaacaggagg atttactgga
     3721 aaagttggaa atttaaagat taataatgct tacttatttt tataaaaatg gagcaatttt
     3781 gagcgctgga aactataaaa cacaagctgg aaaagttatt ggtgatcctg gattagtgta
     3841 aataataatt ttagtaatat ttatgtttat cataatttag aaaatggtta cattgatgaa
     3901 ggacagaatt ttttaagtct gtgcaatata ataatgaagt aacagaaaaa aaagattttg
     3961 atagtgctgt aagaaagaaa tttaacgata taaaatatct tgataataat tcttatgctt
     4021 ttgctgattc ttttaccaag gtaacagatg ctgtgaaatt atccaaagac gactttgatc
     4081 caaaattact tcaaagaatt ttagatgatt tgatgaatgg aaaatacact tatgattttg
     4141 ataccaaaac ttggacttac acagatagta agggtgtggt aggaaaagat gaggctagtg
     4201 aaatcactca aagtttaaat ttcttaaatg cgtttaaaga tacgggagta gaacaagaat
     4261 ttttaaagtt atggcaaggt tcgcaagaac aaagttataa aaattatacc aatctttatg
     4321 aaaaatggac gcaaaagaaa actgctatgg ataaaatcaa aaccggcaaa ggttgtttcg
     4381 ctagttttaa agaagaatta caaaaatacc aagaagcctt agctcaactt gacaaagaaa
     4441 acaaaaacta tgaaaaaatc aaagaatcag gcttagttag cgatgaaacg cttagagtta
     4501 tgtatgcaaa acttttagaa caaaaagaag ctcttgaaaa gcagtttgcg gatcttagtg
     4561 gaaatgaagg atttcactat aagcttgaaa atgagattct aaattctcaa ggttttgcta
     4621 taaatggaag cgatgtagat ggtaaagtgt acactggaaa atataatttt gaaggaaaat
     4681 tagcctcatt gccagaaaaa tcaaatatat ctatctatga gccagataaa caaaaaaaag
     4741 agggaggggg tgaagatcca gacaaacctt ctgtattgcc gcctgaaatt cctgaaaagg
     4801 ttgtagaagc tcctataaaa attcaaacta aagtagacac aaaaaaaaga tgatgatcaa
     4861 gtggacatag gaaaaacaga tgctagaagt agtggtttgc gttgtattgt aagtgataat
     4921 tttaagacaa tgaacatttg tgtaaatgca aaataggaaa taaaaatgag aaatttaatc
     4981 ttattgcaag tattttcaca tgctgaagag ctaaataata ataaaataag agagcttata
     5041 gaaagctctt ctgaagcaaa tggaccacaa aataaaaatt aaaaaataca ttaaaaaatc
     5101 aaaaaagccc tgtaaatttt aaagagcaaa atactacaaa tattgcaaat ttacaaactg
     5161 atcaaaatga agctaaggtt tttgtaagag agtatgtttt gcatatcgat aataaagatt
     5221 tgacatttaa aaaattaaga attagcgaaa aagaaattca agatgcaata gctgaatatc
     5281 gcaaccaaga attaagctta caaaatttaa aagatataac aaacattata gcttattatt
     5341 gtcaattaag tagccatcct tcggcaactg cttatatacc accgcaagat ttaagttcta
     5401 acaaagtgca aattaacata gcttttggaa cttttaggaa aagtaatcat taaaaacaac
     5461 tcaggtgtca gagattatgc tttagagagt aaattgaaca aaaatcttaa agggaaagtt
     5521 atcacaacta aaaatgtgga aaatgaaatt tataaaatca atgaaatata cggaatccaa
     5581 accaatgcta atttacaatc aggtgatggt tgtggagaaa gcgatgttat tatagaagta
     5641 aacaaaggcg agatagtgta actttaactt tatattctaa caactatggg actaaagaaa
     5701 caggtcgttt tagagcagga atgagtcaaa gtttaaacaa tatagcaaga taaggggata
     5761 acttaaattt ttatcttcaa gatagtgatg aaaatcaaac agattatggg attaattata
     5821 gtacttttat agggaattta aaaattactc catttgcaac tcaaggacat tatattcctg
     5881 gcagaattta tagaaatctt agtttttata gggactctat gaatgttgga gtaaattttt
     5941 cttatcctgt gtttttatat actgagtatt ctttatatct tgtttcgggt tttactcata
     6001 aaaagattaa agattattat cttgatggtt tagtaagcaa tgaaaaagcg agaaatagtg
     6061 taaatttggg catagaaaga acttatagag gtttggagaa taatgtccta agttatactt
     6121 taaattttat atatggtaat gttgaaaatg atggtgattt ttctggattt aatggagtaa
     6181 atttaggaaa ttttggaaaa atgaatttaa atttaagcaa caaatatcaa ttctaagaac
     6241 gcttaactca catttttcaa cttaattatc aaaaagttat cagcgatgct gttttagata
     6301 gtagtgaatc cgtatcttta ggtagacctt gtggtatatg tgtttgttta gaaggtgagg
     6361 gaagtgcgga taatgttgtt tctggcgcct tgggaataag atttcaaaca cctttagaag
     6421 ggctttactc gactcctttt tatgatatag ggtattcttg gtatgaaaat aaagaatatt
     6481 aaagtgaaaa tcattatctt atggatgcaa tgggtataca aatactctat acaagaagtg
     6541 ctaattttta tgtaaaaatg gatgctgcaa gagctgttca tcggtttaaa cacgatggag
     6601 aacatcgagc aagagtttat gcaagcctag aaaaatactt ttaactttgg ggtgattgga
     6661 aaatttcccc cccccgccat ttttaaaccc accaaatact taatataaat acttacacaa
     6721 atatttatac tatttaatcc tttgtttaat acacttttaa gtttaattgg ttatactttc
     6781 atttcctttt tttgaaaaaa ggacttaaaa tcttttaaat tataaagttt cactagctta
     6841 gtagatttta taaattaact cttttggttt ttgtcttata aactaaaagc ttttttataa
     6901 atcttgtttt ttaatttaaa aacttttctt ttaaaaatga ttttttgttt tgttctttta
     6961 acttagtatt gttattcaaa tcttattagt caatctttga aatctaaata agtgatcgat
     7021 tgagccagaa agatttaggc ataagtaatt atgtaaaatc tattcaatct aataattaaa
     7081 aagattaaaa gtttttcttt taatctttca taactttttc tttgaagaaa aagattaaac
     7141 tatctataat ttttatggag agtttgatcc tggctcagag tgaacgctgg cggcgtgcct
     7201 aatacatgca agtcgaacga tgaagcttct agcttgctag aagtggatta gtggcgcacg
     7261 ggtgagtaag gtatagttaa tctgccctac acaagaggac aacagttgga aacgactgct
     7321 aatactctat actcctgctt aacacaagtt gagtagggaa agtttttcgg tgtaggatga
     7381 gactatatag tatcagctag ttggtaaggt aatggcttac caaggctatg acgcttaact
     7441 ggtctgagag gatgatcagt cacactggaa ctgagacacg gtccagactc ctacgggagg
     7501 cagcagtagg gaatattgcg caatggggga aaccctgacg cagcaacgcc gcgtggagga
     7561 tgacactttt cggagcgtaa actccttttc ttagggaaga attctgacgg tacctaagga
     7621 ataagcaccg gctaactccg tgccagcagc cgcggtaata cggagggtgc aagcgttact
     7681 cggaatcact gggcgtaaag ggcgcgtagg cggattatca agtctcttgt gaaatctaat
     7741 ggcttaacca ttaaactgct tgggaaactg atagtctaga gtgagggaga ggcagatgga
     7801 attggtggtg taggggtaaa atccgtagat atcaccaaga atacccattg cgaaggcgat
     7861 ctgctggaac tcaactgacg ctaaggcgcg aaagcgtggg gagcaaacag gattagatac
     7921 cctggtagtc cacgccctaa acgatgtaca ctagttgttg gggtgctagt catctcagta
     7981 atgcagctaa cgcattaagt gtaccgcctg gggagtacgg tcgcaagatt aaaactcaaa
     8041 ggaatagacg gggacccgca caagcggtgg agcatgtggt ttaattcgaa gatacgcgaa
     8101 gaaccttacc tgggcttgat atcctaagaa ccttttagag ataagagggt gctagcttgc
     8161 tagaacttag agacaggtgc tgcacggctg tcgtcagctc gtgtcgtgag atgttgggtt
     8221 aagtcccgca acgagcgcaa cccacgtatt tagttgctaa cggttcggcc gagcactcta
     8281 aatagactgc cttcgtaagg aggaggaagg tgtggacgac gtcaagtcat catggccctt
     8341 atgcccaggg cgacacacgt gctacaatgg catatacaat gagacgcaat accgcgaggt
     8401 ggagcaaatc tataaaatat gtcccagttc ggattgttct ctgcaactcg agagcatgaa
     8461 gccggaatcg ctagtaatcg tagatcagcc atgctacggt gaatacgttc ccgggtcttg
     8521 tactcaccgc ccgtcacacc atgggagttg atttcactcg aagccggaat actaaactag
     8581 ttaccgtcca cagtggaatc agcgactggg gtgaagtcgt aacaaggtaa ccgtaggaga
     8641 acctgcggtt ggatcacctc ctttctagag tacaaagtaa taagtctcac aactattact
     8701 tcaatatata aactcaattg attcttgttt agatttcaaa gattgatgat aaagctaatt
     8761 gtttatgggg aattagctca gctgggagag cgcctgcttt gcacgcagga ggtcagcggt
     8821 tcgatcccgc tattctccac catttattaa gggcctatag ctcagctggt tagagtgcac
     8881 ccctgataag ggtgaggtca caagttcaag tcttgttagg cccaccataa aaaagatttg
     8941 aataaagaag ctttaaaatc taaagcaagt atataaaata gattaaatat aaaatataaa
     9001 ctctatactt agatttattt tttatcttta actataaaag aatatacttt aatagatata
     9061 agtagcatat acattatgca tttatattta taatgattat gttaatatat atacttcctt
     9121 taggttttaa acctaaatgt tctttttaat tatcattgtt aagagtcaca agcaagtttt
     9181 aataaaaaca attttacagg acttgttaaa ggataaaacc tatttatctt ttctttagtt
     9241 taacttactt ttagctgtct tctcttctat gaataaagag aatattagat ttaaggatta
     9301 taaattaaag acaagtttca aactcactgc ttagttgaga ctaaatcatt tagttttata
     9361 ttaagtgttt gaatgctttc cgtcttaaga taaagaagtc ttatcataaa aactttaaca
     9421 aggaagtgat gcgttttaga atcaataata aaaggtaaaa aaggtaagct actaagagcg
     9481 aatggtggat gccttgactg gtaaaggcga tgaaggacgt actagactgc gataagctac
     9541 ggggagctgt caagaagctt tgatccgtag atttccgaat ggggcaaccc aatgtataga
     9601 gatatacatt acctatatag gagcgaacga ggggaattga aacatcttag taccctcagg
     9661 aaaagaaatc aatagagatt gcgtcagtag cggcgagcga aagcgcaaga gggcaaaccc
     9721 agtgcttgca ctgggggttg taggactgca atgtgcaaga gctgagttta gcagaacatt
     9781 ctggaaagta tagccataga gggtgatagt cccgtatgcg aaaaacaaag cttagctagc
     9841 agtatcctga gtagggcggg acacgaggaa tcctgtctga atccgggtcg accacgatcc
     9901 aaccctaaat actaatacca gatcgatagt gcacaagtac cgtgagggaa aggtgaaaag
     9961 aactgaggtg atcagagtga aatagaacct gaaaccattt gcttacaatc attcagagcc
    10021 ctatgtagca atacagggtg atggactgcc ttttgcataa tgagcctgcg agttgtggtg
    10081 tctggcaagg ttaagcaaac gcgaagccgt agcgaaagcg agtctgaata gggcgcttag
    10141 tcagatgctg cagacccgaa acgaagtgat ctatccatga gcaagttgaa gctagtgtaa
    10201 gaactagtgg aggactgaac ccataggcgt tgaaaagccc cgggatgact tgtggatagg
    10261 ggtgaaaggc caatcaaact tcgtgatagc tggttctctc cgaaatatat ttaggtatag
    10321 cgttgtgtcg taatataagg gggtagagca ctgaatgggc tagggcatac accaatgtac
    10381 caaaccctat caaactccga ataccttata tgtaatcaca gcagtcaggc ggcgagtgat
    10441 aaaatccgtc gtcaagaggg aaacaaccca gactaccagc taaggtccct aaatcttact
    10501 taagtggaaa acgatgtgaa gttacttaaa caaccaggag gttggcttag aagcagccat
    10561 cctttaaaga aagcgtaata gctcactggt ctagtgattt tgcgcggaaa atataacggg
    10621 gctaaagtaa gtaccgaagc tgtagactta gtttactaag tggtaggaga gcgttctatt
    10681 tgcgtcgaag gtataccggt aaggagtgct ggagcgaata gaagtgagca tgcaggcatg
    10741 agtagcgata attaatgtga gaatcattaa cgccgtaaac ccaaggtttc ctacgcgatg
    10801 ctcgtcatcg tagggttagt cgggtcctaa gtcgagtccg aaaggggtag acgatggcaa
    10861 attggttaat attccaatac caacattagt gtgcgatgga aggacgctta gggctaaggg
    10921 ggctagcgga tggaagtgct agtctaaggt cgtaggaggt tatacaggca aatccgtata
    10981 acaatactcc gagaactgaa aggctttttg aagtcttcgg atggatagaa gaacccctga
    11041 tgccgtcgag ccaagaaaag tttctaagtt tagctaatgt tgcccgtacc gtaaaccgac
    11101 acaggtgggt gggatgagta ttctaaggcg cgtggaagaa ctctctttaa ggaactctgc
    11161 aaaatagcac cgtatcttcg gtataaggtg tggttagctt tgtattagga tttactccga
    11221 aagcaaggaa acttacaaca aagagtccct cccgactgtt taccaaaaac acagcactct
    11281 gctaactcgt aagaggatgt atagggtgtg acgcctgccc ggtgctcgaa ggttaattga
    11341 tggggttagc attagcgaag ctcttgatcg aagcccgagt aaacggcggc cgtaactata
    11401 acggtcctaa ggtagcgaaa ttccttgtcg gttaaatacc gacctgcatg aatggcgtaa
    11461 cgagatggga gctgtctcaa agagggatcc agtgaaattg tagtggaggt gaaaattcct
    11521 cctacccgcg gcaagacgga aagaccccgt ggacctttac tacagcttga cactgctact
    11581 tggataagaa tgtgcaggat aggtgggagg ctttgagtat atgacgccag ttgtatatga
    11641 gccattgttg agataccact ctttcttatt tgggtagcta accagcttga gttatcctca
    11701 agtgggacaa tgtctggtgg gtagtttgac tggggcggtc gcctcccaaa taataacgga
    11761 ggcttacaaa ggttggctca gaacggttgg aaatcgttcg tagagtataa aggtataagc
    11821 cagcttaact gcaagacata caagtcaagc agagacgaaa gtcggtctta gtgatccggt
    11881 ggttctgtgt ggaagggcca tcgctcaaag gataaaaggt accccgggga taacaggctg
    11941 atctccccca agagctcaca tcgacgggga ggtttggcac ctcgatgtcg gctcatcgca
    12001 tcctggggct ggagcaggtc ccaagggtat ggctgttcgc catttaaagc ggtacgcgag
    12061 ctgggttcag aacgtcgtga gacagttcgg tccctatctg ccgtgggcgt aagaagattg
    12121 aagagatttg accctagtac gagaggaccg ggttgaacaa accactggtg tagctgttgt
    12181 tctgccaaga gcatcgcagc gtagctaagt ttggaaagga taaacgctga aagcatctaa
    12241 gcgtgaagcc aactctaaga tgaatcttct ctaagctctc tagaagacta ctagtttgat
    12301 aggctgggtg tgtaatggat gaaagtcctt tagctgacca gtactaatag agcgtttggc
    12361 ttatctttaa taaagcatca cttccttgtt aaggttttta agaagacttt gaatatagat
    12421 aatatttaga gtttaataga aatctttcaa gtagagtttg tattagaact tgctcttaac
    12481 attgtttttt aagtattcta tataaaaact tatcaaggat aaaagataag aaaagaagaa
    12541 agagaataaa gaaaaaagta aaggaataaa agat
//
LOCUS       DARGED010000038        12378 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.038, whole genome shotgun sequence.
ACCESSION   DARGED010000038 DARGED010000000
VERSION     DARGED010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12378
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.038"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..291
                     /locus_tag="SFZ84_000852"
     CDS             <1..291
                     /locus_tag="SFZ84_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEG8202975.1"
                     /translation="DREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDL
                     SEIRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(314..3331)
                     /gene="cmeF"
                     /locus_tag="SFZ84_000853"
     CDS             complement(314..3331)
                     /gene="cmeF"
                     /locus_tag="SFZ84_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG8202976.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKIQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQTAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFQFCFKLDSKLRKIYEREKLN"
     gene            complement(3334..4074)
                     /gene="cmeE"
                     /locus_tag="SFZ84_000854"
     CDS             complement(3334..4074)
                     /gene="cmeE"
                     /locus_tag="SFZ84_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG8202977.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYNNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(4071..5345)
                     /gene="cmeD"
                     /locus_tag="SFZ84_000855"
     CDS             complement(4071..5345)
                     /gene="cmeD"
                     /locus_tag="SFZ84_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG8202978.1"
                     /translation="MFKKYLKSAIFLALYPLAMLASNLHEFITLSQNNESYLIKKMQS
                     EQANLDKEQAFRNYLPSLSLSSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSFLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSSKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            5472..7268
                     /gene="lepA"
                     /locus_tag="SFZ84_000856"
     CDS             5472..7268
                     /gene="lepA"
                     /locus_tag="SFZ84_000856"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG8202979.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            7345..7989
                     /locus_tag="SFZ84_000857"
     CDS             7345..7989
                     /locus_tag="SFZ84_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202980.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            7986..8561
                     /locus_tag="SFZ84_000858"
     CDS             7986..8561
                     /locus_tag="SFZ84_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG8202981.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            8602..11190
                     /gene="gyrA"
                     /locus_tag="SFZ84_000859"
     CDS             8602..11190
                     /gene="gyrA"
                     /locus_tag="SFZ84_000859"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG8202982.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            11259..11774
                     /gene="flgP"
                     /locus_tag="SFZ84_000860"
     CDS             11259..11774
                     /gene="flgP"
                     /locus_tag="SFZ84_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG8202983.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            11750..12199
                     /gene="flgQ"
                     /locus_tag="SFZ84_000861"
     CDS             11750..12199
                     /gene="flgQ"
                     /locus_tag="SFZ84_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG8202984.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            12256..>12378
                     /locus_tag="SFZ84_000862"
     CDS             12256..>12378
                     /locus_tag="SFZ84_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HEG8202985.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKI"
BASE COUNT         4291 a         1691 c         2143 g         4253 t
ORIGIN      
        1 gaccgcgaag agtataaaaa atttcgccaa aatattcaca ataaagaaaa tatgaaatgg
       61 aaatttaatg ctttagctaa gctttttagt aattatttta atactttaga atgcactccg
      121 caaaatgatc ttagtgaaat cagacaaaaa tatttgattt tggtaaaact ttatcatcct
      181 gattttcatc aaggaaaaag tgcaatagaa aaagcttacg caagagagca gtttgaaaaa
      241 atacaaattg cctatgataa cttaaaagca ctttataaga ataatactta aaaaattaaa
      301 ttaatcattt gggttaattt aatttttctc tctcataaat ttttcttaat ttgctatcta
      361 gtttaaaaca aaattgaaaa agtgcaggta ctacgagtaa ggtaagcaaa gtcgaactta
      421 taagtccaaa gataatggct attgccatag gagaattagc ttcatagccc gcaccccttg
      481 aaagagcaag tgggagcata gcaaaaatca tagcaaaagt tgtcatcaat atagccctta
      541 agcgcgattt tccagcgatt aaaagagctt tatcgggatc taaaccttca tggcattttt
      601 tattagctac atctacgagt aaaatagcat ttttccctac cataccaaaa agtaagatga
      661 tggcaataag tacaaaaagt gaaaaattat gccctgtgat aaaaagccct atagaagctc
      721 cgccaaaggc taaaggcatg gttatcatga tgattaaagg cagaataaaa ctttcataaa
      781 gtgcggctaa aacaagataa attaaaacaa aagcaagtgc tactgccata gcaaaacctt
      841 gcacggtttc acctaaaaga ttgataaagc ctgaaaaagc atagctaaga cttggattgt
      901 tatttaaaat tttatccata ttatctagta aaagtttttg caccgctcct aaggaaagat
      961 cattcactcc agctgtgatt ttcacagagc ggtttttatt gtaacgattg atagttttta
     1021 aatctttact gtatataaaa tccaccacgc ttgaaagttc taaatttata ccttggttgt
     1081 ttttaatgct aatgcgcttt aaagcttcta tgtctttttt aaattctgga gcaaaactta
     1141 ggataatatc atcttttgaa ttgcctctat ccatgcttcc tacgctaagt tgcgagaaag
     1201 aataccctaa aaccccagcg atatattgag gattgacatc taaaagtttg gctttttctt
     1261 tgttgatgtg taaggctact tcatcttttg tagcattagc attatcactt atatctacaa
     1321 tgcgtgcatt agtgcctaaa atttcttttg cctgagaagc agcttctttt agagtgttta
     1381 aatcatctcc taagattaaa aattgcacgg gatcatcaat gcctgcaccc tctatctttg
     1441 gaagttctaa aattttgatt tttaaacttt catcttgaaa tttttgacga tataaactta
     1501 ctatggcagt ttgtcttaaa tttctttcgt ctaaattttt aagtttaaca taaattttag
     1561 cctttgtagc atctttggca tcatcatagc ctacaagtaa aaaagcgtat ttgacattgc
     1621 tatcattttt gattttttca agcaaattta aacttttttc tttcatggct tctaaactta
     1681 aatccttttt gctttcaagc aaaacttgaa tttcactatc atcttccata ggtaaaaaat
     1741 caagccctat gcgagtggct aaagcaaaag aaagccctat aaaaacaaga gtggctagga
     1801 taaattttac tttattttgt aaaattttat agagtaaatt ttcatacttt tgctctattt
     1861 tttcaaaaaa agcttctgtt ttttcataaa acttgttttc ttttggattt aaaaatcttg
     1921 ccccaatact aggtattaaa aatacagaaa ccaaaaagct tataactatc ccacttgcaa
     1981 cgcttatgcc taaggcattg aaaaaaagcc ctgatataga gttcatataa gaaataggga
     2041 taaaaacaca aagtaaaact atacttatgc ttaaaacact aaaacctatt tcattgatac
     2101 ctaaaaaagc agcttgtaaa ggcggataag tttttagttt tttagcaata ttttcaatca
     2161 ctactatagc atcatcgata aaaattccta tgcttaaggt taaagctata aaagttaagc
     2221 ggtttaaatc atagcctaaa agatcgataa taaaaaaagt tgaaatgata gaagtaggta
     2281 tagctatgca agcaatgaga gttgcactta aatttcttaa aaataaaaac acgataacaa
     2341 gggttagaaa aatccccaaa accatatcaa aaatcacttg agaaaggtgc ttgtggatat
     2401 ttaagctttt atcataaagc atattaatgc ttatatcttt tggaatttgt ttttctaaaa
     2461 taggcaaggc atttttgaca tttttaatca tttcaagggt gttataattt gtgatttttc
     2521 cgagttctaa aagcacccct tctttacctt cgtataaagc actttgtttt tcatcttcat
     2581 aaaggcttga aatattagca atatcactta aaaatacccc tgtttttatg cgaagattac
     2641 taagttcttc taaatttgtg gcttcaaaat agcctttgat gatatagtta tcttgattgt
     2701 tgttaagttc gcctagggct tgtttaaaat tttgactttt gatgatattt gctacatcaa
     2761 gggcgttaag attgtatttt ctaagttcgt ttggttttaa ttctatgcga atttggggtt
     2821 ctaaaaaccc cttagcttcg attttaccta ctccttcaac tctttgcaaa aaaggtttta
     2881 ttttatcatt gatttcacgc atgagttgta ttttatcttt agaatataaa aaaagcgaaa
     2941 tagcagaacc agaatctgaa ctgatttttt caatttcagg cttagaaggt aggcttaaag
     3001 ttcctatttt atcacgcaca tcattagcag ctacttcaag atttttaccc agtttaaact
     3061 ccactacact cacactaaaa ttatcatacg cagctgaggt tatggtcttt actccatcga
     3121 tttcacttaa agcattttct atttctttag tgacttttga ttctacgaaa tttaaatccc
     3181 catttatctt gcttgtgatt tttataagag gtatggaaac attaggaaat aaatttacac
     3241 tcatgctaaa agcagagatt agcccaaaaa tcataagagc taagaaaaac attagcacgg
     3301 taataggtcg gtttatagct agtttaaaca tttttaatct ttagtgatga ttctaccttc
     3361 accaaaaagc cctggtgtta gatttgtggt ttgcacttca gcataaattt ttcttgtttt
     3421 tacttctata cttggataaa taaggctgat ttttcctttc aattctgtac cattttgatc
     3481 gattttataa aagaaatcat cgcctaatct aactttatct ttatattttt catcaaaact
     3541 taaaatcagt ttgctttgtg gataggaaaa aatttctatt aaaggttgag ctactcctcc
     3601 tactccttcg cccacttgta taaatttgtt tgcgataata gcatcataag gtgcgcgtaa
     3661 ttcttttttt gccatgatat tgttataata agctatattg atttttgctt tgtttaaatt
     3721 taaattagca gcatcaaact tagctttcat atcttcatag ctttgtttgt ctataacatt
     3781 ttctacagct ttgatttttt gcatcctact tttggtattt tcgtattcta caagggcaag
     3841 ctgataagaa ttttgagcat tttgaagagc tattttttca ctttcttgat caagagcaag
     3901 taaaagttct cctttgctga ctttttgtcc aatttctaca ggaatttttt gaaccaaacc
     3961 tatgctttca agggcaagtt tgctttgttt tgatgcttct acattgaaac ttgcgtaaat
     4021 ttcttcgcca aaggcgcaat taaaaacaag aagtaaaaat agaatttttt tcattcttta
     4081 acctttgaat taagatctat acccgcatta aaataataat ttgctttagt aatttcaaat
     4141 tcatttttag caagctctaa atcgctttgt gctttaaatt tagcctctaa agcttgaaga
     4201 tattctacat aagaaacaag tcctgcttgg tattttttat ctacactttc aaaagctaaa
     4261 tttgcagcat ttaagctaag attaagagct aaaatttgtt cttgtaaaac ttttaaactt
     4321 ttgtctaaat aatttaattc ttctttattt tttctctcgc taaatcttgc atttgcattg
     4381 gctatttgaa catttaaacg ctctttttca acttctttag cccttgcatt gaaatcaaaa
     4441 attttccatt ccatacctaa aataaattga ttaccttgag aatatttttc taagaattga
     4501 tccgctaaat ttgcaaaagg agctggaact tttggattat aattgttttt ataaaagtta
     4561 aaattatctt gaatataaaa ttttggaaaa tattcagctt ttgctaaatt tacactttct
     4621 ttagcaagat tgatttgttc tttagctatc attacttcat agttttgact tttttcttgt
     4681 tgcggatttt ctaaaaaagc attcccttgc actttaaaat ctgtatcgct taaaatttta
     4741 atctcttttt gtatattggc aagttttaat tcattttgac tgagctctaa taagcttaaa
     4801 tggtatttag ccttaatgct ttcaagttca tctttagagc taagtcccgc gtcgtaaaat
     4861 ttttgcaatc tttcaaaagt tgattttaaa aaagatactt tttgttgatt ggctagtaaa
     4921 attttttcaa gacttaaggt gttaaaataa agtgtgattg catttagggc aaggtaattt
     4981 ttattttgtt ctttgtctaa aaagcttaat ttttctctgc tttctaaagc tcttaaatta
     5041 gcctctctag cacccccatc aaaaagcaaa aaattaagag aaactttagc aaataaactt
     5101 tcttgtggat cgataatgaa gcgatcttta ttgttggcta cataagctga gcttagacta
     5161 agagagggta ggtaatttct aaaagcttgt tctttgtcta aatttgcttg ttcgctttgc
     5221 attttcttaa tgagatagga ttcattattt tgacttagtg ttataaattc gtgcaaatta
     5281 gaagctaaca ttgctaaggg ataaagagct aaaaatatag ctgattttaa atatttttta
     5341 aacattttga tattttaata tactttatat aaatttcaat tgaagttttt tatataaaat
     5401 aaaatttatt tgttttaaac ataaattttg ttaaaatcct agctttaaaa ttttatattt
     5461 aggatgaaat tttgtcggta aaaaatatta gaaatttttc tattatagct catatagatc
     5521 atggaaaatc tactcttgca gataggatta ttagcgagtg tggtgctatt agcgataggc
     5581 agatgagttc acaagttatg gatactatgg atatagaaaa agagcgtggt atcaccataa
     5641 aagcacaatc agtgcgttta aattataaat ttaataatga aaattttgtt ttaaatctta
     5701 ttgatactcc tggccatgtg gatttttctt atgaagtgag tcgttctttg gcaagttgtg
     5761 aaggggcttt gcttgtagta gatgcttctc aaggtgttga agcacagact atagctaatg
     5821 tttatatagc gcttgaaaat aatcttgaaa tcattcctgt gattaataaa atcgatttac
     5881 ctaatgctga tgttgagaaa gtaaagcatg aaatcgagca tattataggt atagattgca
     5941 aagatgcaat ttgcgtgagt gcaaaaacag gagtgggtat aaaagagctt atagaaacaa
     6001 ttattactaa aatccctgca ccaaaaacag atgatgaagc tcctactaag gctttaattt
     6061 atgattcttg gtttgataat tatttgggtg ctttggcttt ggttaggatt tatgaaggaa
     6121 gtattgctaa aaacgatgaa gttttagtca tgagtacgga taaaaaacat atagttcaag
     6181 atctttttta tccccaccct ttaagtccaa ttaaaactca atctttacaa tcaggcgaag
     6241 taggtgtggt ggttttaggg cttaaaaccg taggtgatgt acaagtaggc gataccatca
     6301 ctttggtaaa aaacaaagct aaagaagcca taggtggttt tgaaaaggct aaagcttttg
     6361 tgtttgcggg actttatcct atagaaacgg ataaatttga agatttaaga gatgctttgg
     6421 ataaattaaa gcttaatgat agttctatta cttatgagcc tgaaacttct ttggccttag
     6481 gctttggttt tagggtagga tttttagggc ttttacatat ggaagttatc aaagaaaggc
     6541 ttgagagaga atttaatctt gatttgattg ctacagctcc aactgtgact tatgaaattt
     6601 atcaaaccga tggagagctt attaaaattc aaaatcctag cgagcttcct cctgttaata
     6661 aaatcgatca tataaaagag ccttatgtta aagctactat cattactcca agtgaatttt
     6721 tagggaattt aatcactctt ttaaatcgca aaagaggagt acaggttaaa atggactata
     6781 tcacacctga gcgtgttttg ctagaatatg atgtgccttt aaatgagatt gtgatggatt
     6841 tttatgataa attaaagtcc ttaacaaaag gttatgcgag ttttgattat gagcctatag
     6901 aatttagagt aggggatttg gtaaaacttg atattaaggt agcgggtgaa aatgttgatg
     6961 cgttaagcat tatcgtgcct aatgaaaaag cgcaaagtaa aggaagagaa cttgttagtg
     7021 ctatgaaaga aatagttcct agacagcttt ttgaagtggc cattcaagca agtattggaa
     7081 ataaaatcat cgcaagagaa actgttaaat ccatgggtaa aaatgtgaca gcaaaatgtt
     7141 atggtgggga tattactaga aaaagaaagc ttttagaaaa gcaaaaagaa ggtaaaaaaa
     7201 gaatgaaagc tataggtaag gtaaatttac ctcaagaggc ttttttgagt gttttaaaga
     7261 tagattgatg ataaatttaa aacttggctt gaaatttgct tgtattttta atacaatttt
     7321 aaaataattt tctaaggaga aaaaatgttt aaaaaatttt tgatttttat agtgcctatt
     7381 ttatttttga gtgcttgtgc aactaaacaa gatacttttg ctcaagttaa tcaaatttct
     7441 aaaaattctc aatgcagttc ttgtgaaagt cctggtggtt ttgaagcaaa gattaaaggg
     7501 cttttataca ttagcgatgt tggaattcaa tgttgtgcca ataaacgcac tttagacact
     7561 ggtattgctt tgaaaaaggt ttatttacat agattttatg atttaaaaga agggcaaaag
     7621 gttttaaatg ctaaagggaa aaagttattt gtcgatgtga attttaatgc ggtattttat
     7681 acttatttaa aacaagaact tgaagctaga ggaatagttg tgcttgacaa taacgatcaa
     7741 aattcacctt atgtgagtaa gattgattta gaatttatat cttatggagc aactcaagat
     7801 gctataggat tacattcaaa actagtagga gttttacaag ttagtgatat aaataaaaat
     7861 aagaaattta caatccgcac caagcaagat gtacaaggtt ttgatgattt aaaagaaaca
     7921 actttttata ctcatttgtt aataaaacaa atggcaaata aagcagctag tttaatctct
     7981 gaactttgag gtgtataaat tgcggagctt ttgctctgct ctgcttttgt gaattatgcg
     8041 agctagagct ttctgaattt tccttaaatg taagaaagct tgataataat ttcaaagtct
     8101 attcttttta taaataccat gaaatacaac acttgcttca ctctaaacat tatttttatg
     8161 gttattttgt ttataaaatg cttgctaaat taagttttgc aaaatttaaa gatttttttg
     8221 atcctagaat gacaattaat gttatagctt tagatgataa ggttgaagat atgctttatt
     8281 cacattctgc tattttagct agatatctta aaacaaaatt tgtaaaacct gtttttaatg
     8341 ttttaaaagc acaaaattct gtgaaatatt ctggaaaaag tttagaattt cgtcaaaaac
     8401 ataaaagaaa ttacaaactc ttaaaaacca ttcacgaacc tgtaatttta gtagatgata
     8461 ttgtaacaac tggttctagc cttttggaag ctaaaaaagt tttagaagaa aataaaattt
     8521 ctgtactttt tgctcttgtt ttagctgatg caaaagttta atatgctata atcaaaactt
     8581 tgaactaata gaaggatttt tatggagaat atttttagca aagattctga tattgaactt
     8641 gtagatatag aaaattctat aaaaagtagt tatttagact attctatgag tgttattata
     8701 ggtcgtgctt tgcctgacgc aagagatggt ttaaagcctg ttcatagaag aattttatat
     8761 gctatgcaaa atgatgaggc aaaaagtaga acagattttg tcaaatcagc ccgtatagtg
     8821 ggtgctgtta taggtcgtta tcacccacat ggagatatag cagtttatga tgctttggtt
     8881 agaatggctc aagatttttc tatgagatat ccaagtatta caggacaagg caactttgga
     8941 tctatagatg gtgatagtgc cgctgcgatg cgttatactg aagcaaaaat gagtaaactt
     9001 tctcatgagc ttttaaaaga tatagataaa gatacggtcg attttgttcc aaattatgat
     9061 ggttcagaaa gcgaacctga tgttttacct tctagggttc caaatttatt attaaatggt
     9121 tcaagtggta tagctgtagg tatggcgaca aacatcccac ctcatagttt aaatgagttg
     9181 atagatggac ttttatattt gcttgataat aaagatgcaa gcctagaaga gattatgcag
     9241 tttatcaaag gtccagattt tccaacaggt ggaataattt atggtaaaaa aggcattata
     9301 gaagcttatc gcacagggcg tggtcgtgtg aaagtgcgag ctaaaactca tattgaaaaa
     9361 aagacaaata aagatgttat tgttatagat gagcttcctt atcaaaccaa taaagctagg
     9421 cttatagagc agattgcaga gcttgttaaa gaaaagcaaa ttgaaggaat atctgaagta
     9481 agagatgaga gtaataaaga aggaatccgc gttgttatag agcttaaacg tgaggctatg
     9541 agtgaaattg ttttaaataa tctatttaaa tctaccacta tggaaagtac ttttggtgtg
     9601 attatgttgg caattcacaa taaagaacct aaaattttct ctttgttaga acttttaaat
     9661 cttttcttaa cccatagaaa aacagttatt attagaagaa cgatttttga acttcaaaag
     9721 gcaagagcaa gagctcatat tttagaaggt cttaaaattg cacttgataa tatagatgaa
     9781 gtgattgctt taattaaaaa tagttctgat aataataccg caagagattc tttggtagct
     9841 aaatttggtc ttagcgagct tcaagccaat gctattttag atatgaaact aggtcgttta
     9901 acaggacttg aaagagaaaa aatcgaaaat gaacttgcag aattaatgaa agaaattgca
     9961 agacttgaag aaattttaaa aagtgaaacc ttgcttgaaa atttaattcg cgatgaatta
    10021 aaagaaatta gaagtaaatt tgatgtgcca cgtattactc aaattgaaga tgattacgat
    10081 gatattgata ttgaagattt gattcctaat gaaaatatgg ttgtaactat cacacatcgt
    10141 ggttatatta agcgtgtgcc tagtaaacaa tatgaaaaac aaaaacgagg tggaaaagga
    10201 aaattagccg ttacgactta tgatgatgat tttatagaaa gtttctttac ggcaaataca
    10261 catgatacgc ttatgtttgt aacagatcgt ggacagcttt attggcttaa agtttataaa
    10321 attcctgaag gctcaagaac ggctaaagga aaagcagtgg taaatcttat caatttacaa
    10381 gctgaagaaa aaatcatggc tattattcca accacggatt ttgatgagag taaatcttta
    10441 tgtttcttta ctaaaaatgg tattgtaaag cgtacaaatt tgagtgaata tcaaaatatc
    10501 agaagtgtag gagttagagc gatcaacttg gatgaaaatg atgagttggt aactgctatt
    10561 attgttcaaa gagatgaaga tgaaattttt gccactggtg gtgaagaaaa tttagaaaat
    10621 caagaaattg aaaatttaga tgatgaaaat cttgaaaatg aagagagtgt aagcacacaa
    10681 ggtaaaatgc tctttgcagt aaccaaaaaa ggtatgtgta tcaaattccc acttgctaaa
    10741 gtacgtgaaa tcggccgtgt aagtcgtggg gtgacggcta ttaagtttaa agagaaaaat
    10801 gacgaattag taggtgcagt tgttatagaa aatgatgagc aagaaatttt aagcataagt
    10861 gcaaaaggta taggaaaacg cacaaatgct ggagaatata gattgcaaag cagaggtggt
    10921 aagggtgtaa tttgtatgaa acttacagaa aaaaccaaag atcttattag cgtagttata
    10981 gtagatgaaa ctatggattt aatggctctt acaagttcag gtaagatgat acgtgttgat
    11041 atgcaaagca ttagaaaagc agggcgtaat acgagtggtg tcattgtagt taatgtggaa
    11101 aatgacgagg tggttagcat cgctaagtgt cctaaagagg aaaatgatga ggatgagtta
    11161 agcgatgaaa actttggttt agatttgtaa taagtttaaa gttggaacgc ttattgcttt
    11221 ttatttttta ctaattacaa tattttgaag gtgtaaaaat gaaaaaaatt tattttatgc
    11281 tagcaatagc aggaattttc gctggttgtg tatcaagtgc aaacagtgca actaaaaatt
    11341 caagtgcaaa tagcactgcc ccatctcaag atgttatcgt gcaaaaagtc gataaagatg
    11401 atgtgcgtga tattatcaga gaagaaaaaa tgttggctcc agatgctagc gaaacggaac
    11461 ttagttttac agcagttggt gaagggattg ctccgatgaa tacagtttct actgctcaag
    11521 ctctagcttt agcaaaaaga gcagcgatta cagatgctta cagacagctt gcaagtaaac
    11581 tttatggtgt gaaagtgaat ggtaaagaca ctgtaaaaga tgcaatgctt agaagttcaa
    11641 ctattactgc gcaagtaaat ggtttgataa aaaatgcaag tattattgat gagaatttta
    11701 atcaagggct ttatagagta aacttagaac ttaaaatcga tgcagacaag tggaaagaat
    11761 tgtttgctta ttaatctttc ttagctttaa gctttttgcc caagatgaat ttattttttg
    11821 ggcagagctt tctagtaaaa atttcattct ctttcatcaa aatcaaaatt tatccttagc
    11881 aatgacgcaa agcgaaaatg ttgaagaaca atgggtatgt gaaatttctt atagtgatca
    11941 agatttaaaa gttttacctc gaacttcttt aggattgatt gatgataata tgccaaaaac
    12001 aattaaattt aattttttaa attctcataa agatgaatta agcgattgct ttataggagc
    12061 tagaatcagt gttaaggata ttgttaatac tgacttatta cgtgctcaaa gtgaaactta
    12121 tgttaaaatt ttacccttgc gttttaccgt agaatttggc gaacaaaatg cgataattta
    12181 ttatcttaaa aaaaagtaaa ttcaaaatta agcgcaaatt ggatactata gtagaaattt
    12241 tttaaaaggc ttaggatgaa tttagtcata gtagaagatg atattaatat gcgcaaatcc
    12301 ttagaaattg cattagcaga gtatgaagaa tttaatatta aatcttataa atctgccact
    12361 gaagctttaa aaaaaata
//
LOCUS       DARGED010000039        11964 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.039, whole genome shotgun sequence.
ACCESSION   DARGED010000039 DARGED010000000
VERSION     DARGED010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.039"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..343)
                     /locus_tag="SFZ84_000863"
     CDS             complement(<1..343)
                     /locus_tag="SFZ84_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8202986.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLE"
     gene            complement(352..843)
                     /locus_tag="SFZ84_000864"
     CDS             complement(352..843)
                     /locus_tag="SFZ84_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG8202987.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(833..1768)
                     /locus_tag="SFZ84_000865"
     CDS             complement(833..1768)
                     /locus_tag="SFZ84_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG8202988.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(1771..2940)
                     /locus_tag="SFZ84_000866"
     CDS             complement(1771..2940)
                     /locus_tag="SFZ84_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG8202989.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(2950..3555)
                     /locus_tag="SFZ84_000867"
     CDS             complement(2950..3555)
                     /locus_tag="SFZ84_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG8202990.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDTLIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(3675..3887)
                     /locus_tag="SFZ84_000868"
     CDS             complement(3675..3887)
                     /locus_tag="SFZ84_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG8202991.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            4047..5423
                     /gene="ccoG"
                     /locus_tag="SFZ84_000869"
     CDS             4047..5423
                     /gene="ccoG"
                     /locus_tag="SFZ84_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG8202992.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            5410..6042
                     /gene="cmeR"
                     /locus_tag="SFZ84_000870"
     CDS             5410..6042
                     /gene="cmeR"
                     /locus_tag="SFZ84_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG8202993.1"
                     /translation="MNSNRIPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINGSKA"
     gene            6136..7239
                     /gene="cmeA"
                     /locus_tag="SFZ84_000871"
     CDS             6136..7239
                     /gene="cmeA"
                     /locus_tag="SFZ84_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG8202994.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            7239..10361
                     /gene="cmeB"
                     /locus_tag="SFZ84_000872"
     CDS             7239..10361
                     /gene="cmeB"
                     /locus_tag="SFZ84_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG8202995.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            10354..11832
                     /gene="cmeC"
                     /locus_tag="SFZ84_000873"
     CDS             10354..11832
                     /gene="cmeC"
                     /locus_tag="SFZ84_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG8202996.1"
                     /translation="MNKIISISTIASFTLLISACSLSPNLNTPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKETYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQNEDTSKNIKEESKNLDISFRE"
BASE COUNT         4144 a         1955 c         1753 g         4112 t
ORIGIN      
        1 tttctaaatt tttaccctgc cataaagcat ttgcctttaa aatatcactt aaaatatcat
       61 cataatatac atttttaaaa aatttttgat taaacacttt tttatcataa cacactgcat
      121 tgatacaaat tttatctttg attttgagtt caaaaaaagc ttgccctagt ttataaactt
      181 ctaaatttaa agcattattt tcttttttta aaaaagctgc gtcattgatt tttatcatag
      241 gagaagcaat caaaaccatc aagctttgac tcgaaaaatt ttgatttttc acactacaag
      301 cacaaagaaa aaaaataaaa cacagagcta aacaatgctt caaatttgac cttatttaag
      361 atttttaaaa ctgatattta actctaaatc aagctctttt acaagcttca tcacagcttg
      421 taaatcatca atttgttttg ctacaacacg aatttcttca ccacgaatcg aagaattaac
      481 tttaagtttg ctatctttga tagctttatt gatttttttg gcattttcac tatcaatagc
      541 atcgtttgct ttcaaattta aacgaaacat tgctccactt tcacgagaaa gctctttaat
      601 agcattagga ttaattcctc ttttgataag tttagaaatc actatatctt ttaaaacatc
      661 aagctttcct tcactagaag aactgagttt aaaaatactc tctttttcgc ttaaatcaat
      721 ctcacactta attcctttta agtcataacg actatcaagt tcttttttag cttgttcaaa
      781 agcatttttt aactcttgtt tatctaaagc tgctgaaata tcaaaactat gttcacttgc
      841 cattttctat ccattctttt aaattattat aaactatatc cattaaagca tttaaagcct
      901 ccttgctcgc ccacgcaaca tgaggagtga taataagatt ttctttattt ttaatgctta
      961 aaagtggatg atttttcatc ataggttcaa tttctaaaac atcaagccct acacgaatat
     1021 ttttttcatc tatgatttta gctaaatcat tttcattgac aatcccacct cttcctacat
     1081 taatcaaaat cgcattatct tttaaaagct ttaattcttc aaaggcgagt aaatttttgg
     1141 ttttttcatt taaaggtgcg tggatactta taatatcgca agtttttaat aaatctttta
     1201 attccaaatg tacaaaatct gcgtttttat tagctccact cgtagaataa taataaattt
     1261 cggctccaaa agcctttgaa atttttgcca cttctttacc tatggttcct aaacctataa
     1321 taccatgttt tttaccactt aaggtgttta aaattctact ataatctgta aaaataggac
     1381 tttcacacca tttaccctct ttgctccatt tgtcataata aagcacttga tttaaaaaag
     1441 caaacataaa cgcaaaagta tgttgcacca cactcatagt agaataccca gcagcatttt
     1501 ttacaataat acctttttct ttagcatact caatatcgat attattaacc cctgtagcag
     1561 tttccaaaat gagttttaaa tttttacaag catcaatcac atctttatca attacaacct
     1621 tgtttgtcat ggcgacatta gcatctttta aacgctctat ggtttgctct ttatttgttg
     1681 tggtataaat ttgcaaagaa ccaaattttt caaaaacact taaatcataa tcccctaaag
     1741 ttgccgcatc taaacaaaca attttcattt ctaatccttt ataatatgtc ctacaaattt
     1801 agaataatta tcaagcacaa gtcctccttt tctaaatcct aagccacacc cttcataagc
     1861 aaagaaaaca cctgcttgat agtattcgtt ttcacatgaa ttaaactcta catattcttg
     1921 ataaatagcc ttattattcc cataaggacc tacattctca tgcaaagttt ttccatcttt
     1981 aattatactg atatttgcac cttctctacc aaaaacaggt tttttaacat agtttttacc
     2041 ttccaaagga gtatcttttg tttctaaaag taatggatga tttggataaa gttcccatag
     2101 aatttttaaa attcccttag attgaaataa aagcgtataa gcaggattta aaataattgc
     2161 tctttgatta cgcatgattt gagttaaaag catagcaagt tcaccctctt ctatggctat
     2221 atcttcccaa ggaataagct taaaccaata ctcataattt tcaccctctt taaaaattcc
     2281 ttcttcacta aattctacct catctacaaa ggaaaaatta gtttgaaaac ctgcttcatt
     2341 ggctatatgt gcaagcaatt ttgtagtgat ttcctcttct ttacttcctg caacacttga
     2401 aaaaagaatt ttccatcctt gataatgctc ttcaaaccct tcaacacttt catcaagggt
     2461 aataagtctt ttaaaattat ccatcaaact ttcataaatg ctgttaaatt gtgcgctttc
     2521 atccattcca ttttgtttta aaagtgccca ttgtaaaatc gcactttcaa aaagagcagt
     2581 aggggtatca gcattaaatt ctataagttt tataggcttg ccatcaagtc cacccgctaa
     2641 atcaaaacgc ccatataaat gccaatgaac ctcattttcc caactcatct taatcgcatc
     2701 aataagatta aaaggaattc caagctcatc aaaacgatca ttattaatca cttcttgcgc
     2761 tgcagcaata aacatatcat aaagctcatt taccgcttca taataagcat tagcttcact
     2821 ttccttaaca caaactaact tattgctaat ataatcactt ccatcttcat ctgtatgcca
     2881 agaaaaacct atattttcta aataatcttt ttgaagtttg tctacttgta ataattgcat
     2941 tatttatcct taagagccaa aagaagaact agaacttgtg gctttagagc ctccaccaaa
     3001 aaaacctgat tttttagcac ttgaagcaga gcttgttgtg cctgctttat taaaactatt
     3061 aacactcctt tgataagcac tttgatttga aaaagcaccg cgttgttggt tggcaaaatt
     3121 ttgattattg aaaagttttg aacctatcca acttcctaaa atagcacctg cagcacttgc
     3181 gagtaaagtt tcccctaaac tcaatccccc actactgatt tgtccattgt ctttagttaa
     3241 atttgaagtt ccattatcaa ttttagctgc ttcttcttta atcaaagtat ccatttcttc
     3301 tttggataaa attctttctg taccattaag atcttttaaa actacccttg tttcatcact
     3361 tggatattga tctttgattt tatactgccc tggagctgtt tcttcgataa ttacaaaagc
     3421 tccttgagca ttagctgctt gatttaaagt atctgcattg tcattattac ttccacaacc
     3481 tgctaaagca cctccagcaa cagctgctaa accacctatc ataccaattt gaatgatttt
     3541 tttgattttt ttcataagtt tatcctaaaa acagaaaatt taaattagaa attttaacaa
     3601 aaaataataa atacttttta atttaatacc aaatgaagtt tgtagatata aaaaagccct
     3661 ttcgggcttt tgggttagag tcttgactcg tagcgtctaa gcatataaag tcttttaagc
     3721 atttttttgc gtgctgaaat tttttgtttt ttgcgaattt cagtcatagg ctcaaaaaat
     3781 cttcttgctc ttacttcagt cacaactaga tttctatcta cttgtttttt gaatttacga
     3841 tacgcttcat caaaagactc gttaggatgc accttgattc ctggcacagt cctcaccacc
     3901 tttctgtgta aatttttgtt gtgaaatata attataaaac acttcttatt aattctaact
     3961 tagaaagcat ttaaaaattg ttttagtttt tatcggttat aatccttaat tacaaagtgc
     4021 taaaaaatta taattaaggt ctaaaaatgc aaggacacat tacaaactat acaaaaaaac
     4081 gatattttgt atatttaatt gcaagtatta tcatattttc cctacctttc ataagaatta
     4141 atgagaatca tttttttctt ttaagttttg atcattctaa attaaaccta ttttttattt
     4201 ctttttcaac acaagaattt tatctcatgc cttttgttct tatatttctt tttttattta
     4261 ttttttttat tacaacttta ggtggaagaa tttggtgtgc ttggagttgt ccacaaacga
     4321 tttttagagt tatatataga gatatcatac aaactaaatt tcttaaaatt cgcaaaaata
     4381 tcaataacaa acaaaaagaa tatgagaggc aatattttaa aaaatttctt ggagtgataa
     4441 ttttttattt tatatcttta gttgctgtta gtaatttact ttggtacttt attcctcctg
     4501 aagatttttt caattatatt caaaatcctg gcgagcatct acttttactt ggaattttat
     4561 tttgtgctag cttacttttt actttggata ttacctattt acaagaaaaa ttttgtgttt
     4621 atgtctgtcc ttatgcaaga atacaatctg taatgttcga tcatgataca atgcaagtga
     4681 tctacgatga aaaacgcggg ggcttgatct atgatggaca caccaaactt cataaaaaac
     4741 cgcctgaggg agaatgcata ggttgcgaag cctgtgttag catctgtcca actcatattg
     4801 acatacgcaa aggaatgcaa cttgaatgta ttaattgtct tgaatgtgcc gatgcttgct
     4861 ctaaggttca aagcaaattt aatcgtccaa gtttgatcaa ttggacaagt gcaaaagcta
     4921 ttgaaacgcg ttctaaggtt cattatttaa gatttagaac gatagcatat tttatagttc
     4981 ttctaattgc tttactggct ttaatcatca tgggaagcaa aaaagaaagc atgcttttaa
     5041 atatcaatcg tagtagtgaa ttatataata tttcaaatgt taaaggtgaa ttagtcattt
     5101 caaatgctta tacctttttg tttcaaaata cagattctaa acctcatgaa tattatttta
     5161 cagcaaattt agaaggaata aatgatggaa ttgaaatcat aagaccaaac aaacctttta
     5221 aattaaaagc aggagaacaa gtcaaaaaaa tagttgttat cagggctaca aaaaatttag
     5281 caaataatga taaaaaagac gtaatctttc ctttacatat aaaagcttac gcaaaggata
     5341 atgaaaaaat ttcggttttt agaaaaagta tatttgtata ccctaaaagc actcttataa
     5401 aggataaaaa tgaactcaaa tagaatacca tcacaaaaag ttttagccag acaagaaaaa
     5461 atcaaagcag tggccttaga gcttttttta acaaaaggat accaagaaac aagtttgagt
     5521 gatattatta aattatctgg aggatcttat tctaatattt atgatggttt taaaagtaaa
     5581 gaagggctat tctttgaaat tttagatgac atatgtaaaa aacactttca tcttatttat
     5641 tccaaaacac aagaaattga aaatggcact ttaaaagaaa ttttaacttc ttttggttta
     5701 gcttttatag aaattttcaa tcaaccagaa gctgtagctt ttggtaaaat tatctattct
     5761 caagtttatg acaaagatag acatcttgcc aattggatag aaaacaatca acaaaatttt
     5821 tcctataaca tacttatgga ttttttcaag caacaaaata attcttatat gaaaaaaaat
     5881 gcagaaaaac ttgctgttct tttttgcact atgttaaaag aaccttatca tcatcttaat
     5941 gttttaatta atgctcgttt aaaaaataaa aaagaacaaa aagaacatgt tgaatttgtt
     6001 gtaaatgttt ttctaaatgg gatcaatgga tccaaagctt aaaagtaatt ttattaacca
     6061 aaattaagat ataattagcc aaaaattttt gtaataaata ttacaatttt taatttaatt
     6121 tttcaaggca aaaccatgaa attatttcaa aaaaatacta ttttagcttt aggtgttgtg
     6181 cttttactca ctgcttgcag caaagaagaa gcaccaaaaa tacaaatgcc gcctcaacct
     6241 gtaacaacca tgagtgctaa atctgaagat ttaccactta gttttactta ccctgctaaa
     6301 cttgtcagtg attatgatgt cattataaaa cctcaagtta gtggcgtaat agaaaataaa
     6361 ctttttaaag ctggagataa agtaaaaaaa ggacaaacat tatttattat agaacaagat
     6421 aaatttaaag ctagtgttga ttcggcttac ggacaagctt tgatggctaa ggcaactttc
     6481 gaaaatgcaa gcaaggattt taatcgttct aaagctcttt ttagtaaaag tgcaatctct
     6541 caaaaggaat acgactcttc tcttgctaca tttaacaatt caaaagctag tctagcaagt
     6601 gctagagcac agcttgcaaa tgcaagaatt gatctagatc ataccgaaat aaaagctcct
     6661 tttgatggta ctataggaga tgctttagtt aatataggag attatgtaag tgcttcaaca
     6721 actgaactag ttagagttac aaatttaaat cctatttacg cagatttctt tatttcagat
     6781 acagataaac taaatttagt ccgcaatact caaagtggaa aatgggattt agacagcatt
     6841 catgcaaatt taaatcttaa tggagaaacc gttcaaggca aactttattt tattgattct
     6901 gttatagatg ctaatagtgg aacagtaaaa gccaaagcta tatttgacaa caacaactca
     6961 acacttttac caggtgcttt tgcaacaatt acttcagaag gttttataca aaaaaatggc
     7021 tttaaagtgc ctcaaatagc tgttaaacaa aatcaaaatg atgtttatgt tcttcttgtt
     7081 aaaaatggaa aagtagaaaa atcttctgta catataagct accaaaacaa tgaatatgcc
     7141 attattgaca aaggattaca aaatggcgat aaaatcattt tagataactt taaaaaaatt
     7201 caagttggta gcgaagttaa agaaattgga gcacaataat gttttctaaa ttttttatcg
     7261 aaagacctgt ttttgcttca gttgttgcaa ttatcatttc tttagctgga gctataggtc
     7321 ttacaaattt acctatagaa caatatcctt ctttaacccc tcctacagtt aaagtaagtg
     7381 caacttacac aggagctgat gcacaaacca ttgcttcaac agttgcaagt cctatcgaag
     7441 atgcaatcaa tggcgcagat aatatgattt acatggattc aacttcaagt tcttcaggaa
     7501 ctatgagttt gactgtttat tttgatatcg gtacagatcc tgatcaagcc accatagatg
     7561 ttaataatag aatttcagcc gcaactgcaa aaatgccaga tgcagttaaa aaacttggag
     7621 taacagttag aaaaacttcc tcaacaacac ttgctgcaat ttctatgtat tcaagtgatg
     7681 gctcaatgag tgcagtagat gtatataact atatcacttt aaatgtttta gatgagttaa
     7741 aaagggttcc aggagttgga gatgcaaacg ctataggaaa tcgtaattat tctttaagaa
     7801 tttggctcaa gcctgattta ttaaataaat ttggaatcac agctactgat gtaatttctg
     7861 cggttaatga ccaaaatgcc caatacgcaa ctggtaaaat tggcgaagaa cctgtaaccc
     7921 aaaaatcccc ttatgtttat tcaatcacta tgcaaggaag actacaaaat cctagtgaat
     7981 ttgaaaacat tattttaaga acaaataatg atggatcatt tttaagactt aaagatgtag
     8041 ctgatgtgga aataggatca caacaataca gctcacaagg acgattaaat ggcaatgatg
     8101 cagttccaat tatgatcaat cttcaatcag gggcaaacgc attgcataca gcagaacttg
     8161 ttcaagccaa aatgcaagaa ctttcaaaaa attttccaaa aggtttaaca tataaaattc
     8221 cttacgatac aacaaaattt gtaatagaat caatcaaaga agttgttaaa acttttgttg
     8281 aagctctaat tttagttatc attgttatgt atatgttctt aaagaatttc cgtgcaacac
     8341 ttattcctat gatagctgta cctgtttcat tgttaggaac ttttgctgga ctttatgttt
     8401 taggttttag tattaacttg cttacgcttt ttgctttaat tttagccata gggatcgttg
     8461 tagatgatgc gattatagtt gtagaaaata ttgataggat tttacatgaa aatgagcaaa
     8521 taagcgtaaa agatgctgct atccaagcga tgcaagaagt tagctctccg gttatttcaa
     8581 ttgttcttgt gctttgtgct gtttttgtac cagtttcttt tatatcaggt tttgttggag
     8641 agattcaaag acaatttgct cttaccttag ctatatctgt aaccatatca ggttttgttg
     8701 ctcttacctt aacaccttct ttatgtgcac tctttttgcg acgcaatgaa ggagagccat
     8761 ttaaatttgt aaagaaattt aatgattttt ttgattggag tacctctgta tttagcgcag
     8821 gagtagcata tatcctaaaa agaaccattc gttttgtttt aattttttgt attatgcttg
     8881 gagcaatttt ttatctctat aaagcagtac caaattcttt agttcctgaa gaagatcaag
     8941 gtttgatgat tagcattatt aatcttcctt cagcttcagc actccataga acaatttcag
     9001 aggttgatca cataagccaa gaagttttaa aaactaatgg agttaaagat gcaatggcta
     9061 tgataggatt tgatcttttt acaagttcac tcaaagaaaa tgccgctgca atgtttatag
     9121 gtttgcaaga ttggaaagat agaaatgtaa gcgctgatca aattatagcc gaacttaata
     9181 aaaaatttgc ttttgatcgc aatgcttcaa gtgtatttat aggcttacct cctatacctg
     9241 gattaagtat cacaggcggt tttgaaatgt atgttcaaaa caaaagcgga aaaagctatg
     9301 atgaaataca aaaagatgta aataaacttg ttgctgtggc caaccaaaga aaagagctat
     9361 caagagtaag aacaaccctt gatacaactt tccctcaata caagcttata attgatagag
     9421 ataaattaaa acactacaat cttaacatgc aagatgtttt taacacgatg aatgcaacta
     9481 taggcactta ttatgttaat gatttttcta tgctaggtaa aaatttccaa gtaaatatcc
     9541 gcgcaaaagg tgattttaga aatacacaag atgcgttaaa aaatattttt gtaagatcaa
     9601 atgatggaaa aatgatacca cttgattctt tcttaacttt acaaagaagt tcagggcctg
     9661 atgatgtaaa acgattcaac cttttcccag cagcacaagt tcaaggtcaa cccgcaccag
     9721 gttatacttc aggtcaagct atagaagcga ttgctcaagt agcaaaagaa actttagggg
     9781 atgattattc catagcttgg agtggatcag cttatcaaga agtttctagt aaaggaacag
     9841 caagttatgc ttttgcttta ggtatgatat ttgtcttttt aattctagct gctcaatatg
     9901 aaagatggct tataccttta gcagtcgtaa cagctgtacc ttttgcggta tttggatcat
     9961 ttttattggt atatttaaga ggatttagca atgatatata ttttcaaaca ggacttttgc
    10021 tcttgattgg actttcagct aaaaatgcta tcttaatcgt agaatttgca atggaagagc
    10081 gctttaaaaa aggtaaagga gtttttgaag cagctgttgc agcagcaaaa cttcgttttc
    10141 gtcctatcat aatgacttct ttggcattta cttttggggt cttaccaatg attttcgcaa
    10201 caggagcagg aagtgcttca agacactctt taggaacagg gcttgttggt ggaatgatcg
    10261 cagcatcaac tttagcgata ttcttcgtgc ctttattttt ctatctttta gaaaatttta
    10321 atgaatggct agataaaaaa agaggtaagg ttcatgaata aaataatttc aattagcact
    10381 atagcaagtt ttactctttt gatttcagct tgctctttaa gtccaaattt aaatactccc
    10441 gaagcaaact atagcattga taataagctt ggagccttat cttgggaaaa agaaaacaat
    10501 agctctatca caaaaaattg gtggaaagac tttgatgatg aaaatttaaa taaagtggtt
    10561 gatttagcac ttaaaaataa taatgattta aaacttgcct tcatacacat ggaacaagct
    10621 gctgctcaat taggtataga ttttagcagt ttgttgccaa aatttgatgg tagtgcaagc
    10681 ggaagtcgtg caaaaacagc tataaatgct ccaagcaatc gaactgggga agtaagttac
    10741 ggtaatgatt ttaaaatggg acttaattta agctatgaaa tcgatctttg gggaaaatat
    10801 cgcgatacat atcgcgcctc aaaatcaggc tttaaagcaa gtgagtatga ttatgaagct
    10861 gcaagacttt ctgttatttc aaatacagtt caaacttatt ttaatcttgt aaatgcttat
    10921 gaaaatgaaa atgctcttaa agaaacctat gaatcggcaa aagaaattta taggattaat
    10981 gatgaaaaat ttcaagttgg tgctgtaggt gaatatgaac ttgctcaagc aagagccaac
    11041 ttagaaagta tggctttgca atataatgaa gcaaagttaa ataaagaaaa ttaccttaaa
    11101 gctttaaaaa ttttaacttc aaatgattta aatgacatac tttacaaaaa tcaaagctat
    11161 caagttttta atcttaaaga atttgacatt ccaactggaa tttcaagtac catcttgctt
    11221 caacgtccag atattggctc ttctttagaa aaattaactc agcaaaatta tcttgttgga
    11281 gtagctcgca cggctttctt acctagcctt tctttaacag gattattggg atttgaaagc
    11341 ggggatttag ataccttggt taaaggaggt tctaagactt ggaatatagg tggaaacttt
    11401 actctgccta tttttcattg gggtgaaatt taccaaaatg taaatttagc caagcttaat
    11461 aaagatgaag cttttgtaaa ttatcaaaat actttgatta ctgcttttgg agaaattcgc
    11521 tatgctttag tagctagaaa aactatacgc ttacaatacg ataatgcaca agcaagcgaa
    11581 caatcttaca aaagaatcta tgaaattgct aaagaacgct atgatatagg agaaatgtct
    11641 ttgcaagatt atttagaggc acgtcaaaat tggcttaatg ctgccgttgc ttttaataat
    11701 actaaatatt cttatgccaa ttccatagta gatgtaatca aagcatttgg tggaggattt
    11761 gagcaaaatg aagacacgag taaaaatata aaagaagaat caaaaaattt agatatatct
    11821 tttagagaat agttcgttct attctctaaa taaattaaaa atctttatct aaatctgtat
    11881 ctgtaatttc ataaaccttg taaatagcag gcaataattt tcttatagca taatcaaaat
    11941 gataaaattg cttatatacc tctt
//
LOCUS       DARGED010000040        11826 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.040, whole genome shotgun sequence.
ACCESSION   DARGED010000040 DARGED010000000
VERSION     DARGED010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.040"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1336
                     /locus_tag="SFZ84_000874"
     CDS             <1..1336
                     /locus_tag="SFZ84_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEG8202997.1"
                     /translation="QNAINKGLDELILMENAGLNLAKLIKKEAKKIRIQRKIRKVKIL
                     FLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYAFKFCKKEPNFKK
                     FHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGFYPCFKADITFCM
                     GALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLKTIDRKINANKGN
                     FGHIYIVANASAGTLAGLGALNFGAGLVSLVAQTSFSPLLMLKEKIENNASAIALGMG
                     LENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKEFIKLYKMCFDEN
                     LDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLGNQALAKGGSGDV
                     LSGMIAAHLGFGFSALEAAKNATLAHGLIAKKYKFNKNSFDALKLIKGLKCL"
     gene            1327..1893
                     /gene="purN"
                     /locus_tag="SFZ84_000875"
     CDS             1327..1893
                     /gene="purN"
                     /locus_tag="SFZ84_000875"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG8202998.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGVNLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDSGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            1965..2684
                     /locus_tag="SFZ84_000876"
     CDS             1965..2684
                     /locus_tag="SFZ84_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG8202999.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEEGQSHFKASNKLWIVVAEIAVVDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            2677..2886
                     /locus_tag="SFZ84_000877"
     CDS             2677..2886
                     /locus_tag="SFZ84_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG8203000.1"
                     /translation="MAKDSNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            2896..4080
                     /locus_tag="SFZ84_000878"
     CDS             2896..4080
                     /locus_tag="SFZ84_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG8203001.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFCIINAYNETLKIYKDLAKQYRYKMYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSSDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDTRKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(4094..5452)
                     /locus_tag="SFZ84_000879"
     CDS             complement(4094..5452)
                     /locus_tag="SFZ84_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG8203002.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(5551..6756)
                     /locus_tag="SFZ84_000880"
     CDS             complement(5551..6756)
                     /locus_tag="SFZ84_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG8203003.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(6802..7548)
                     /locus_tag="SFZ84_000881"
     CDS             complement(6802..7548)
                     /locus_tag="SFZ84_000881"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8203004.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFFLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSEFPIGELKEVSIDQKKSNSQDKNKKQDERISFNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(7550..7960)
                     /locus_tag="SFZ84_000882"
     CDS             complement(7550..7960)
                     /locus_tag="SFZ84_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG8203005.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(7947..8708)
                     /locus_tag="SFZ84_000883"
     CDS             complement(7947..8708)
                     /locus_tag="SFZ84_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8203006.1"
                     /translation="MLKKMFLFYFLLLNLNAEANATDTNLSFDSSKIETKAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(8720..10987)
                     /locus_tag="SFZ84_000884"
     CDS             complement(8720..10987)
                     /locus_tag="SFZ84_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8203007.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINSFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKVPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYVNVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            complement(10984..11793)
                     /locus_tag="SFZ84_000885"
     CDS             complement(10984..11793)
                     /locus_tag="SFZ84_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEG8203008.1"
                     /translation="MLSACAVLQKSSPLQENKDFYILDTHTQKKISFEDMILELLKVD
                     VILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLASTEQNHLDKAFKNKK
                     TIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRSEITSIYNGAQPLKG
                     YVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRRMADVLVHHVNKVLL
                     LAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYVLIYKGKE"
BASE COUNT         4153 a         1851 c         1733 g         4089 t
ORIGIN      
        1 acaaaatgct ataaataaag gcttagatga gcttatttta atggaaaatg cgggattaaa
       61 tttagccaag ctaattaaaa aagaagctaa aaaaattcgc attcaacgca agattagaaa
      121 agtaaaaata ctttttttat taggcggggg taacaacgct tcagatggct tggtggcttt
      181 aagaaattta aaacacgcta aagcttataa aataggcttt aaagaaaata cgctttttaa
      241 aaaacaagag caaattttac aaaattatgc ttttaaattt tgtaaaaaag aacccaattt
      301 taaaaaattt catattatca ttgattgtat tttaggtaca ggttcaaatc gttgtttaga
      361 tgaaaaaaca agtttaatta ttcaaaaagt taatcaaagt aaggctttaa aaatagcttg
      421 tgatatacct acaaatttgg gattttatcc ttgttttaaa gctgatatta cattttgtat
      481 gggagcttta aaggaaattt tacttgaaga ttttgctaag gaatttgtag gaaggattaa
      541 aatagccaat ttaggcatta gatctaagaa attttaccct aattctcaag cttttttgct
      601 tgaaaaaaaa gatttaaaaa ctatagatag aaaaatcaac gccaataaag gaaattttgg
      661 ccatatttat atagttgcca atgcaagtgc tggaacttta gcaggacttg gagccttaaa
      721 ttttggagca ggtcttgttt ctttagtagc acaaacaagt ttctcgcctc ttttgatgtt
      781 aaaagaaaaa attgaaaata atgcaagtgc tattgcttta ggtatggggc ttgaaaattt
      841 ggattttcta aaagatgaaa ttttgcaaaa cactcctttg atcttggatg caaactgctt
      901 tttaagtgaa gctttgcttt ggtatttaaa cagaaaagat gttgttataa cccctcatcc
      961 aaaagaattt ataaaacttt ataaaatgtg ctttgatgag aatttagata tagaaacatt
     1021 gcaaaaaaat cgctttttct atgctagaaa attttcacaa aattatgatt gtgttcttgt
     1081 tttaaaagga gcaaatccta ttattgtgca aaaagaaaaa ttatttgttg taaatttagg
     1141 aaatcaagcc ttagctaaag gtgggagtgg agatgtttta agtggaatga ttgctgcaca
     1201 tttaggtttt ggttttagtg ctttagaagc agcaaaaaat gctactttag ctcatggact
     1261 tattgcaaaa aaatataaat ttaataaaaa tagctttgac gctttaaaac ttatcaaagg
     1321 attaaaatgc ttgtaaaatt agctgtactt tttagtggaa atggaagtaa tttagaaaat
     1381 attttagaaa aacttcataa aaaaaccata ggggaaaata cctatgaagt agtactttgc
     1441 atttgtaata aaaaagatgc ttttggtgta caaagagcaa aaaaatttgg tcttgatact
     1501 gtcattgttg atcataaggc ttataatact cgtgaagaat ttgatacgat tttggtacaa
     1561 aaaatcaaag aaagtggagt aaatcttact gtattagcag gttttatgag aattttaagt
     1621 cctgttttta caaaaaatat taaggcaatt aaccttcatc cttctttatt accccttttt
     1681 aaaggagcac atgcgattaa agaaagttat gaaagtgata tgaaagtggc tggagtcagt
     1741 gtgcattggg tcagtgaaga acttgatagt ggaatgatta tagctcaaaa agcttttgaa
     1801 aaaagaaatt tgagttttga agaatttgaa gaaaaaattc atagtctaga acatgaaatt
     1861 ttacccttaa gtgtgattga aattttttct taaagaatta aaggtatttg ctttaaaact
     1921 ataaaatatc gctttaaaaa attttaaaat tttcaaggaa atttatgttt gaatggatat
     1981 ttagtattga tgcttggatt actttagcta ctttaagtgc tcttgaaatt gtactaggga
     2041 tagataatat cattttttta gctattttag taagcaaact accccctgaa catcgtgata
     2101 aaggacgtat cttaggttta gcttttgcaa tgattacaag aattttactt cttttatctc
     2161 ttttttgggt aatgaaactt gtaacacctt tgtttagtgt attgggcaat gaaatttcag
     2221 gaagagatct agttctttta ctaggtggac ttttcttgat tgtaaagtct attaaagaaa
     2281 ttaaagagca aatttctcat caagaagaag gccaaagtca ttttaaagca agcaataaac
     2341 tttggatagt tgtggccgaa attgctgtgg ttgacatagt gttttcactt gatagtgtta
     2401 ttaccgcagt aggaattgct caagatgtaa ccatcatgat tatcgctgtt attatcgcag
     2461 tagctgtgat gctttttgct tctaaaccta tagcagattt tgttgaaaaa tatccaagca
     2521 ttaaaatttt agccttagct tttttggtgc taataggcgt agttttagtt gctgaaagtt
     2581 ttgatattca tattgataag gcatatattt ataccgctat ggcttttgct ttagtggtgc
     2641 aaattttaaa tattttagat caaagaaagg aaaaaaatgg ctaaagactc taatggaata
     2701 gaacttaaca caggtgatag cgtgagtgta ataaaagatc ttaaggttaa aggtgcaagt
     2761 acaactttaa aacgtggaac tactataaaa aatattaagc tcacttctaa agaaggtgaa
     2821 attgaggcta gagtagataa atttggcgtt attgttttaa aaactgaatt tttaaagaaa
     2881 atctaggcaa agaatgtgcg aatcttactt gttttaagag ggaattatta cgcaggacaa
     2941 gaagaattta tcaaaaataa taaacttcaa aattatacac ttgatttaaa tgctttgcgt
     3001 cttttatcag gaagcgttaa aaatatagtc agtgaatata aaattttaaa tgttaaaaat
     3061 gatgaagatt tgagtaaaat tttactcaaa cttctagaaa tgcgtatgca aaaaggtgag
     3121 ttttgcatca taaacgctta caatgaaaca ttaaaaattt acaaagactt agctaaacaa
     3181 tatcgctata aaatgtatgt tattgttttt gatagctctt taaaacaatg tcaagaaaaa
     3241 aatcttttag aagctaaaaa aaatggatat atcatccctt atgctctttt ggaaaaaact
     3301 caagatttac tcaaaaaaaa tccaaaaaaa tacccaattt tagactcgag cgactggaaa
     3361 aaatgtcttt accaaatgcc aaatttaagc aaatataaaa aaattcatca tataggagat
     3421 ttacaaggtt gttatagtgt tttaaaagaa tacattaaaa caatcaaaga agatgaattt
     3481 tatatatttt tgggagatta tatcaacaga ggtatagaaa atggcaaagt aataaaattt
     3541 cttttaaaaa tttgcgaaaa agaaaacgta tgcttattag aaggaaatca cgaaagacat
     3601 cttataaaat gggctaatgg agaattgtca aattccaaag aatttaatga aaatacttta
     3661 aaggatttta gaaaagaaaa acttactcca agagatacta gaaaactcta tcctcatcta
     3721 aaagaatgtt tatactacaa attccaaaat aaattcatat tttgttcaca tggaggagta
     3781 aattttatac cctccaaacc tgaaaaaata agttttatac caagccatga ctttatttat
     3841 ggtgtaggtg gatatgaaga cagtcaaaaa gtagcaaatc aattttgtaa tttcacctcg
     3901 gacaatcttt atcaaatctt tggacacaga aataaagaaa aacttcctat gaaaatagcc
     3961 aaaagagtat ttttatgcga gggtaaaata gatgatggtg gatatttacg cgtagttaca
     4021 ctagatgaaa aaggttttga gtgtatagaa attaaaaacc aaatttacaa aaagaaataa
     4081 agcctaaaga ggcttattct tcatctttat ttgttttttt aaccacctta acacgctcta
     4141 tagaattccc atccattttt ttaacttcat agtaacaaag ttcatcttca atgcgatctc
     4201 ctaccatagg caagcgtcct aaaagattaa atacataacc gcctatagta acttgttcta
     4261 aatcctcatc atagtttatt acaagcattt cttcaacagt ttctatatcg catcgtcctt
     4321 gaaattcata gatattttca gcaagttttt tatagctgtc ttcttcatgc tcgcttttaa
     4381 tttcgccaat aatttcttcc atgatatctt ccatggttaa aattccagca gttccaccat
     4441 actcatcaac tactaatgca gtatgagagc gttctttatt catcattaca agtacttttg
     4501 aaatgctgat attttcagga accaaaatca aaggtttaac aaaagtatct aaattttgac
     4561 ttttatggtt taattcattt tgtattatat ctcgtatgtg tatcatacct aaaatagtat
     4621 ctttagaacc atcaatataa ggaaagcgag tatgtttatg ctcacaaatg atttgcatat
     4681 tttcttcgta acttttttgt ttatttagac aaatcatatc ttttctagga gtcataatct
     4741 ctttagcaac agtatctgaa aaatcaacag cattgcgtat gatctctgtt tcaaattcat
     4801 ctaaaactcc acctttttga ctctcacttg ctatgatttt aatttcttct tcgctatgag
     4861 ttagctcgct ttctttagca ggttttattc caaaaagttt caaacttata gctgctaaaa
     4921 aatcgaaaat tttaatacaa ggcaaaaaga gcatccaaaa ccaatgaagc ggtctagcta
     4981 taaataaaac cgctttatct gcaactgcaa tagctatact ttttggcaca agttctccta
     5041 aaaccacatg taaaagagta ataatgctaa aagcaataat gaaagctata gtatggataa
     5101 taacagtgct aaaaccaaga ttaataagcg gaatttctag catttttgca atagcaggct
     5161 cacctatcca accaagagct agagaactta aagtaattcc taattgacaa gcactaagat
     5221 atgtatcaag ccttgaagta acctccaaag ctttcttggc accagctttt ttttctttta
     5281 ccatctcttc aagcttggaa cgacgtactt taacaatact aaattcagac aaaacaaaaa
     5341 aaccatttaa aaacactaga gcaagtgcaa caacaaccat aagcatagaa tatcctgcat
     5401 caaaagatgc tgtagaagtt tggtttaaat ccaaaacctg actggggtcc aatgaagctc
     5461 cttaagaaat aaaatattat tgaaccttat tatacacaat taaaagtaaa tttaatattt
     5521 gaattttttc ttgtatttta taagaaaaaa ctaagactta taagaaatat ttttctcaaa
     5581 ttcttttaaa cgcttatata tacttctaag ttgagtgata gttgtccagt ttgtgataaa
     5641 aacactaaaa gagcttcgca cttgatcaaa tgcattatta atctgcatta caataccaag
     5701 tcctatagct ccagcaaaaa gccctggtgc catgattaaa aatggcacta taactatcat
     5761 ttgctcaaat aaaatgagcc aaatattaaa atatccataa tgtaaaaaaa gtcttttata
     5821 gttaaattta agccctgtaa aaagctctat catagtctca tttttagcgt attctttgcg
     5881 attatcctca gcataaacaa gctcttttct aaaagctgct tcagcttttt gattgttata
     5941 ttcaagtcca ggaagcttaa tacctacaaa ccatgacaca accaagcctc ctaaagaaat
     6001 caaaagtgca atataaacaa gcaaaccatc aatgtttttt aaaaaataaa aaaaagaatt
     6061 ttcgcttaaa tttgcaaata aagctttact cacaacatca cttaaactcc ataaaatcgg
     6121 aataaatgct acaagggtca tcaaagcttt tataaaacta agtcctaaac tctctacgat
     6181 tttagaaaaa ttataagtat cttcttgaat tctttgcgaa cttccttcta tattatcatc
     6241 tttatttttc caaaatttta aataagaaaa agtcatagcc tcacgccact taaaagcata
     6301 gacgctagca aaatagatat taattgtagc gattaaaaca taaggaatag caatagccaa
     6361 aaaaactaaa atcaaagcat aaaaatcact tgctgaataa tttggctttt caatcatagc
     6421 cctagagttg aaaaaatatt ctaataaatt ttgataataa tacaatgcgc ctttattgat
     6481 aaaattagct ttttggaaat tttgctcagc tctttgatta gcctcttgga ttaaagtggc
     6541 attattttca agattttctt ctattttttg cgtagaatta gaatccaaaa gttctatttt
     6601 tggcttttgt aaaacattgt aaaaatcact ataccatgaa ttgatcgcaa catttaagct
     6661 tgtttgtata tataagaaaa ataacagtaa aaaaagtccc aaataagccc ataaagccca
     6721 ttttttactt ttaaaaaacg aagagaacat aatcatcacc tttaaaataa aaattctaat
     6781 aaactttttt taatgaaaag tttatttttt acctaaatag tctttaatat tgtaatcaat
     6841 aggcataaca aaactgattt tatcaccatt ttttaacatt tctttaggcg gttttggcaa
     6901 tggagaagct cttttaaata aacttaaagc ttcatcattg agcgctgcat aagggcaaga
     6961 ttttttaagc tctttgctta agacatttcc gctttcatca atgcttacgc gaattcttac
     7021 aacgccttct tgtttttgca ttatcgcttc ttgaggatat tttttaaatt tagtcaaatg
     7081 agccataagc aaagcttgat agcttttaac ttgttctttg gcattgccac ttactatagt
     7141 ttgtgtttta tcttcattac tttgtagcgg agcactgagc gattcatttt taaattttga
     7201 attttcactt gcattagcta tttctttttg agcttggttt tcatcttgct tttcaatctt
     7261 tttttgaact tttaatacag catttttatc ttgagaatta aaacttattc tttcgtcttg
     7321 ttttttgttt ttatcttgag aattactctt tttttgatca atcgaaactt cttttaattc
     7381 cccgatagga aactctgata ccatcataat ggaagtaaat tccgctcctt gtttaaaatc
     7441 aacaccactt gatttttctt gagtataaaa agaaaaaagg aaaaacatta atactaaagt
     7501 atgcaatatc aaacttaaca caaacccaaa aatcacacta gacttcatac taatccatct
     7561 ttttacttga aagagctatt tttccatagc cattctcttt taatttttgc attacttgca
     7621 taatatcttc atactttaca cttttatcga tatgaaaata aataatttct tctttattgc
     7681 ctttggtttt tatatctaaa gcacttgaaa gattttctag gcttaattta tcatcattaa
     7741 tagccaaagt attatcagta tttaaataaa gtatgatggg atttttaagc ttatcctctg
     7801 cttgctgcga actcttgggt aattctattt tgatagaact tgtgataaga ggagtaacag
     7861 ccataaaaac aatcaataat acaagcataa tatctataaa aggagttata ttgatctcac
     7921 ttaactcctc ttctttgtga gccatttcag tttttatcat taaaataact cctatgaaaa
     7981 agtatataga caaaatttgc aagctcatct aaatggtgca taagttttaa attttttctt
     8041 gtaagataat tataaaaaag caccgcaggg atagcagcta tcaagccaaa agctgtagca
     8101 aacaaggctt cagctatacc aggcgcaacg actgccaaag aagcattgcc aagatttgct
     8161 atacctataa atgcattcat aattccccaa actgttccaa aaagccctat aaaaggtgcg
     8221 ctagcaccta tgctcgcaag caaactcaag ccatttttgc ttgctgtgat ttgctttgag
     8281 atggtatttt gcaaacgcaa ttctatacgc tcttttatgt gatcattttt atattcactt
     8341 ttttcaagct catcttgaat ttctaaagat aaaacacctg caaaatcttt tgtctgatct
     8401 aattcattga gattttttaa ttcttttatc ttttgtatag acaagtctag attttttttc
     8461 ataaaataaa attgcataag cttagaaata aaaactgccc atgctaaaat ggaaaataaa
     8521 accaatatat aaataacacc ttttaccacc tcatcagcat tttgataaag actagaaaga
     8581 gaaagctcta ttttaggtgc tttggtttct atcttagaag aatcaaaaga taaatttgta
     8641 tctgttgcat ttgcttctgc atttaaattt aacaataaaa aataaaataa aaacattttt
     8701 tttaacattt gtatattcct taatatttat attcaaaact tactataaaa gtacgaccgc
     8761 gagcagaatt gctaaaaaga tagataggat cacctgctcc attatattga agctgattat
     8821 ctaaggaatt ataagcattt aaggcatcca tgtagttttt atcaaataaa ttttgcacct
     8881 ctgctctcat tgtgaggttt ttaaaccatt ctatattcca atataaatct actataatag
     8941 gaatttttgg taagtcttgt gtggttggtt taggataata aggattgttt ggatccttat
     9001 tccaatcatc tgtatttgga tttacccttt ttgctttgcc tgtgtatttt gctataccac
     9061 caaagcttat tttgtcattt agcctaaagc caagctctac atttacataa tcttttggaa
     9121 gctccatgat tttacttgcc gaaaaagagc caagaagagg tcctgaagtt tgagaaatag
     9181 ttgaacttgt atcttgtctt gaatacatag ctttagcata agcaaaaccc aagtcatagc
     9241 ttaattctaa ctccacaccc ttaaatatgg tatcatcagc tgaatttaag tgcatataaa
     9301 attgcgagct tggaggaact ttacttggat cttcaagata aaattgttca ttataaatat
     9361 aatcttttat ttttgtatga taatacacgg ctttaaaacc aaagcgatca tcatctttta
     9421 aaagtccatg tttaaaagaa ttaaaaccta tttgccaagt attggcttgt tctggtttta
     9481 agaaagaatt gataccattg ccttcgttat ttgagaaaaa catttcttgc acattagggg
     9541 ctctatttgt tctcgcaaaa cttacaaagg gtgtaaaaag ctcgtgtatg gcagctgaaa
     9601 gcatgacaga agcattcagg cgaagtccat ttttatctat atctgtcgcc gcttttggaa
     9661 aacacataaa atttacttca tcgcaagcag gtctgtgtcc tttgatattc caatctaaaa
     9721 gattcacatt ggtatcaagt gtaaagatac cataatttag actattatca agataataag
     9781 taaaaagatt ttgttttcca cgaggctgaa aaggtataga atttactcct tgaattgatg
     9841 tatttaaggt atttttataa tcattaagca aaatatttgc tccaaagcgt gtgtttagat
     9901 taaatccatg ccattcaccc tctaaagtat cacttatatc aaaagtagtg gcagtatttt
     9961 ttgcctttgt gttagctatg gcatcgtttg ccgcaaaagt agattttgat ccataggttt
    10021 gtatgccttg attgtaggca ataagcgtat ttacattaag ccactcatta gggttgtgcc
    10081 aaaaatcaag ttgataattg tcattgtgta tttttctacc ggcaagttcg ttttgatatc
    10141 tacgataaga aaatatagtg tttgtaaaag aatttgggac atattcgagt ttaaaaagtt
    10201 gagagtttgg tttttgggtt aaaaaatctg gatcaaaagg agcgatattg gtatcagcta
    10261 taccatctcc atcagtatca accatactac tacctatctt gccacccccg cctacagtgt
    10321 aattttgagt aattctcttt gcgctataac caaaaagcgc gcccacatat ccattatttt
    10381 caagttcagt ctttccagcc actgcactca tataacttgg tccgattcca ttgcttccat
    10441 aagaaaatcg tcctaaaaat ccaaagatat tgccatcatg tacaatatca tttataccta
    10501 tggtcttaaa atttgctgat cccatcaagg catttgctcc acctactcct tcaaaagttc
    10561 cccttgtaac atcaactccg attaagaaat ttgtatcaat aacagctcca aaagctgaag
    10621 ttcccgtttg tgaatgaaat ctagctggat catctgatgc actaccataa aaagtttgag
    10681 taacaccgtc aatcatggta ttaacacgcc caaaaccact cataccacga atatttactt
    10741 gaactgtacc ttgagcttga tctgtgtttg tgtaggttcc aggtatacta cgcactatag
    10801 aatctatact ttgtgtatct gaacctatac cctctcttgt gcttgttgct ccaggagtta
    10861 caaaaggttt ttcatcgttt ttgatttttg aacctgaaat ttcaagacta tcaaattcta
    10921 attcttcaga aaaagcaaaa ctagcaaaac ataaacctac agcacaaaat aaacttaatt
    10981 ttttcattcc ttccccttat aaatcaaaac ataatcactg tcttttaaat ctatttctcc
    11041 atagcttaaa ttcactacaa ctattttttt actgctttta aaatcttgta tatgtaaagg
    11101 aattcctatt tttttacttg tatgatagct tccagctagc aataaaactt tatttacatg
    11161 atgaaccaat acatcagcca tacgcctgtc tttgaattgt tgaatttcca ccaatttatc
    11221 tagtaattct ttattttctt caggatttag cttatggctt aaggatataa tgtcaaaaag
    11281 ttgttttttt acttcatttg tggttgaaac ataacccttt aagggctgag ccccattata
    11341 aatacttgta atttctgagc gtgaaagatt tgcacctaat atttttgact ttgaataaaa
    11401 aaccacattg acaaattgct cataatcttt ccatttccag accttatccc aatttaatgc
    11461 attagtaagt tcattggctt taatggtttt tttattttta aaagctttat ctaagtgatt
    11521 ttgctctgtg cttgctaaca tttctaaagc tacatcaaag tttatatttt gagaacttaa
    11581 atttccttct aaggcattaa aaatcataac ttgacttatc ttatgtttaa cctcatcgtg
    11641 tttttcgcca agcagtatca catctacttt tagcaattct aaaatcatat cttcaaaaga
    11701 aatctttttt tgagtatgcg tatcaagtat ataaaaatct ttattttctt gaagtggaga
    11761 tgatttttgc aaaacagcac aagcgctcaa cataaagctt ataaatagaa tgcttaaaat
    11821 agtata
//
LOCUS       DARGED010000041        11381 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.041, whole genome shotgun sequence.
ACCESSION   DARGED010000041 DARGED010000000
VERSION     DARGED010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.041"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..550
                     /locus_tag="SFZ84_000886"
     CDS             <1..550
                     /locus_tag="SFZ84_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203009.1"
                     /translation="VFVVYENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREAS
                     FANLNINGQNTNDFVDLDNIVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGG
                     WLSLATAVATAATNKADVRSWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNK
                     NALVIVRSFAPYLPTSVAIMEK"
     gene            560..928
                     /locus_tag="SFZ84_000887"
     CDS             560..928
                     /locus_tag="SFZ84_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG8203010.1"
                     /translation="MKKNILFILMFLLSACVPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKN"
     gene            952..1575
                     /gene="lpoB"
                     /locus_tag="SFZ84_000888"
     CDS             952..1575
                     /gene="lpoB"
                     /locus_tag="SFZ84_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG8203011.1"
                     /translation="MKKTKILGTALIGALLFSGCAQIAYTDGKASQIKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAVGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            1657..2994
                     /locus_tag="SFZ84_000889"
     CDS             1657..2994
                     /locus_tag="SFZ84_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203012.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINIQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKGTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASTSGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNTTKNEAKKSSSIQRSSNVVNSMDDF"
     gene            3004..4206
                     /locus_tag="SFZ84_000890"
     CDS             3004..4206
                     /locus_tag="SFZ84_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203013.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNMQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSFSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGGVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            4365..4673
                     /gene="rplU"
                     /locus_tag="SFZ84_000891"
     CDS             4365..4673
                     /gene="rplU"
                     /locus_tag="SFZ84_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG8203014.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            4684..4938
                     /gene="rpmA"
                     /locus_tag="SFZ84_000892"
     CDS             4684..4938
                     /gene="rpmA"
                     /locus_tag="SFZ84_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG8203015.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            5045..6082
                     /gene="obgE"
                     /locus_tag="SFZ84_000893"
     CDS             5045..6082
                     /gene="obgE"
                     /locus_tag="SFZ84_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG8203016.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNVKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASVGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            6205..6960
                     /gene="proB"
                     /locus_tag="SFZ84_000894"
     CDS             6205..6960
                     /gene="proB"
                     /locus_tag="SFZ84_000894"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG8203017.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            7034..7951
                     /locus_tag="SFZ84_000895"
     CDS             7034..7951
                     /locus_tag="SFZ84_000895"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8203018.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKVILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            7914..8567
                     /locus_tag="SFZ84_000896"
     CDS             7914..8567
                     /locus_tag="SFZ84_000896"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG8203019.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDENFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            8564..9349
                     /locus_tag="SFZ84_000897"
     CDS             8564..9349
                     /locus_tag="SFZ84_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG8203020.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            9355..10191
                     /locus_tag="SFZ84_000898"
     CDS             9355..10191
                     /locus_tag="SFZ84_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG8203021.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            10252..10677
                     /locus_tag="SFZ84_000899"
     CDS             10252..10677
                     /locus_tag="SFZ84_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG8203022.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            10688..11200
                     /locus_tag="SFZ84_000900"
     CDS             10688..11200
                     /locus_tag="SFZ84_000900"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG8203023.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            11203..>11381
                     /locus_tag="SFZ84_000901"
     CDS             11203..>11381
                     /locus_tag="SFZ84_000901"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HEG8203024.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIKS
                     NEIKKERKMEFLDSF"
BASE COUNT         4349 a         1463 c         2030 g         3539 t
ORIGIN      
        1 tgtttttgta gtttatgaaa atggatttgg tgtagttaag gatgaatttg ctttaacctt
       61 accttttata gtggataaaa aaattattag cacaaatatt gctttacaaa ccttaaaaaa
      121 aagggaagct tcttttgcaa atttaaatat aaatggtcaa aatacaaatg attttgtaga
      181 tttagacaat attgtcgcta ctgaatttaa aatcaatatg cctgcaatga ttgctaaagc
      241 cttagctcaa actataatta aaaccacttt aaatgtagct gttgcaaata atgactctac
      301 aggtggatgg ctaagtcttg caacagcagt agcaactgct gcaaccaata aagctgatgt
      361 gcgttcttgg agaggtttac caaaaagtat tgccatagca acaatagaaa atgacggaaa
      421 tttagaaatc aaagatccac aaggcaatat tttgtttcaa aaatcattgg ataaaaataa
      481 aaatgctctt gtgatagtgc gttcttttgc tccgtattta cccacaagtg ttgctatcat
      541 ggaaaaataa ggctaaaaga tgaaaaaaaa tattttattt attttaatgt ttttacttag
      601 tgcttgtgta ccaagttatc aaataaattc aaatcaaaat actgtaattt taggttcaaa
      661 tttaccaaaa agtttagtaa aacaatttca aaagcgtata aatagcaatg gttatttaga
      721 atttgaagtg attttacgca gtacttttgc taaagatgta atttataaag tggattggtt
      781 agataaagat ggttttgtgc taagagatgt tttaaatgag gactatcaag cccttagaat
      841 tccagcagga caagaggtga ttcttcgtaa acttgcatct gatacaagag cgaaggattt
      901 tagattagaa attaaagcaa aaaattaatc tcattttagg aaggataaat catgaaaaaa
      961 acaaaaattt taggaacagc tcttattgga gctttgcttt ttagtggttg tgcgcaaata
     1021 gcttatacag atggaaaggc aagtcagata aaaaaaggcg atgctttaac cttgggtctt
     1081 gatagacaag attttgaaag tgcagctgaa actatgataa atagtatgtt aagcgatcct
     1141 gcttttgcaa atattaaacc aggtacaaga aaggttattg ctattggtag ggttgtgaat
     1201 gataccccgc aaagaatcga tactgaaaaa ctcaccgcaa aaatcacttc tgcattaaga
     1261 aaatcaggta aatttgttct aacttcagca gttgctgtag gcggagcact tgatagcatg
     1321 agtgaagatg taagagaatt aagagataat gatgagttta atcaaaaaac catagcaaaa
     1381 aaagggacat tggtatcgcc tgatttttct cttgcgggta aaattagaca agataatgta
     1441 aaacttagca atggtaaaac tcaagtagaa tactttttct tgttaagact tactgatcta
     1501 acatcaggtt tagtttattg ggaagatgag caaactattg ataaaaccgg ttctagtaaa
     1561 tcagttactt ggtaaaataa aaattaattt atgaataaaa tttttagctc aagtatttag
     1621 cttgggcttt ttttatgatt tttaaaagga tatgaaatga aaaaaatatt atttatcggc
     1681 tctttagtta tggcaagttt actttatgca caaggttccc agcctgtaga aattacacaa
     1741 caagatataa atattcaaaa tgaaatgtct gacgcaagta ctaaggatat taccccaaaa
     1801 tcaattgaag atttttttga agaatttgcg gataatttcg gtatagaata tggtataacc
     1861 aaagatggaa aaacttttta tacaggaaaa ggtactgttg ctgtaaatga tactgatcca
     1921 caatttgcac aagctttaca aaatgcttat caaaaagcaa tgttaaattt acaaagcgaa
     1981 tttataagag atgcttttgg aagaattgct acaagcaaaa ttcaaaatta tgaagcagat
     2041 aattctacta atgctaagga atttgatgaa ttgccaaaag gtgataaggt tgatcaaatt
     2101 ttaaataaac ttacacaatt agctggcgct cagcttgata aggcattaaa agatttaggt
     2161 atagatacaa attctttaag cgaagacaga aaaaagactt tattaaagca agaatttctt
     2221 aataaaacta tgacaaatgc cataggttct atgagtggac ttgttcctgt gcaaactata
     2281 gttacacaaa gaagaggtga gtatgatgta ggtgttattg ctgttatttc caataaaact
     2341 cgccaattag caaaagatat ggcattagca agacagagtg ctattaaggg taaaggcaag
     2401 gcaataagtg agtatctgcc aaaagataca aaaggctttt taaatgaata tggaattcgc
     2461 ttagtttatg atgaaaatgg tgcgcctatt attttaagtt atggaaactg gggttatgta
     2521 gcagatccta gcaatgctaa aaaaacaaat attttagaag atagagccaa agaaacagca
     2581 cttactatgg ctgatgctgc tattatagag tttattaata caaatttaag tcttaaagat
     2641 gaaagaacaa ctggtgatac ttacgaggaa atcatcaaac aaagtattaa tgttaatgat
     2701 agttccactc aagaacaaac tcaaaacata acaaatatta ttgataaagt aaatagtaaa
     2761 ataaaagcaa gcacaagcgg taaaattcgt ggtattcgta ctcttaaaaa atggagctat
     2821 acaagtgaaa atggtattga acacgtagga gctgtgagat tttattctta tgaaaattta
     2881 gccaacacaa atgaggcttt aaattcaaag tcaaatacaa caaaaaatga agctaaaaaa
     2941 tcttctagca tacaaagaag ctctaatgtt gtaaatagca tggatgattt ttaaaggtaa
     3001 aagatgaaaa taattaaaat tcttttttta ggcttatttt taagcctaag tcttaatgct
     3061 aaagttataa ccacaacttc aacaaaatca agcacaggag aaggcacagg cttgactagg
     3121 gaagatgcga taaacaatgc cattatagaa gctataggaa aaatgagtgg agtaagtatc
     3181 aattctctta agaaatctaa cactagcgtt tcaactgata attcaggttc aaatatgcaa
     3241 gataattaca gcgagcaaat ttcaaaagcc accaaaggta gagctgatac ttatgaaatc
     3301 aatagtgttg aacaagatgc aaatggtaaa tatacagcca atgtaacgat ttttaaaacc
     3361 acaacaacaa aaaagtatca agctccaggt ttaagtgcag ataatagaag aagtattact
     3421 gtttttgatt ctactccaga tgctgcaaaa agaggtatag gctcagcttt gcaacaaaaa
     3481 atcatttctg atttattgca aagtcgtaaa tttaatgttt tagaccgtga ttctagtggc
     3541 tattatgaaa tggaaaaagc tttaatcaaa agtggcgacg cagctagcga tgaagtttat
     3601 aaacttaaaa atgtgttagc aacagattat attttattgt tttctatttc aggacttgaa
     3661 ggtaaacaaa aaacaagcaa tttaacagga aaaagcaaaa ctgaaattga agttatcgta
     3721 gattatcgtg tgcttttatt tgctacaaga caaattaaat tttctaatac tttaagcatg
     3781 aaagtcaatc ttaaagacaa tagttttagt gccaatgaaa ccgcactcaa acaaattgca
     3841 aatcgtatag caggagatat tttaaacgca atttatcctt tgaaagttgc aagtgttgaa
     3901 aacaatgaag taatattttc tcaaagctta aatcaaggtg atgtttatga atgttttgct
     3961 cttgggaagg ttataaaaga tacttataca aaagaaaata caggaagagt agaaagcaaa
     4021 acaggaagta ttgaaatcac tcgcacaagc cctaaatttt cttatgcaaa aatcacagaa
     4081 ggtggtgtaa aagtgggcga tatttgcaga cctttaagta atactggtag tggaaatggc
     4141 tacactatag gtcgtgatgc aaattatcaa acccaagaag gcggcggagt aaatctaggc
     4201 ttttaaattt ttagagtttg atttttctca aactctaaac tctttcttaa attcatcaaa
     4261 agttaaagaa aaattttgta aaatcgaaat tttattaaac cactaaagct tttaaatccg
     4321 ttattgcggt gctttatggt actaccaatt tataaggaaa agcaatgtat gctattatca
     4381 aacacagcgg aaagcaatac aaagtaagtg ttggcgatga gctaaaacta gatcactttg
     4441 aagctgaaag caaagcaagt attgaagtaa gcgaagttct tgctatcaat gataaagaat
     4501 taaaggtagg tgcgcctttc gtagcaggtg caaaagttgt tttggaagtg atcaatcacg
     4561 gaaaagataa aaaagttgtg atttacaaaa aaagacgcag aaaagattct aaactcaaac
     4621 gcggttttag aagacaattt actcgcgttg tagtaaaaga tatcaaagct taaggagtaa
     4681 agaatggcac acaagaaagg tcaaggttca actcaaaata accgcgattc tataggtcgt
     4741 cgtttaggtg ttaaaaaatt tggtggcgag tttgttagag ctggaaatat catcatccgc
     4801 caaagaggaa ctgcaactca tgcaggtaac aatgtaggta tgggaaaaga tcatactatc
     4861 tttgctttga ttgatggttt tgtaaaattc gaaagaaaag acaaagatag aaaaaaagtt
     4921 tctgtatatc ctgcataagt ttttaggacg ctttttagcg tcttgaaaac tttaaattta
     4981 taaatttaac ttcttttatt tactcaaatt tagctttata aatttaaagt caaaggcaat
     5041 ttaaatgttt attgatagtg ttaaaattac tttagcttca ggcgatggtg gtaaaggtgc
     5101 tgtaagtttt cgtcgtgaaa aacatgttcc acttggtggc cctgatgggg gagatggtgg
     5161 aaatggtggt gatattattt tcgtatgtga taataatacc cacactcttg taaatttcaa
     5221 aggcaaaaga gaattacgcg cacaaaatgg tgctggtgga atgggacgca ataaaaatgg
     5281 caaaaaaggt gaaaatttag aacttatagt gcctgaagga acgcaagtta tcgatgcaca
     5341 aactaatgaa attttactcg atcttaccaa agaaggacaa agagagcttt ttttaaaagg
     5401 tggaaaaggg ggacttggca acactcattt taaacacgcc accaatcaac gccccgatta
     5461 cgcacaacct ggtataaaag gagaaagtcg cttagtcaga cttgaactta aacttattgc
     5521 cgatgtaggg cttgtgggct ttccaaatgt gggaaaatct actcttataa gcgttgtttc
     5581 aaatgtaaaa cctgaaattg caaattatga atttaccacc cttactccaa aacttggact
     5641 cgtagatgta gatgagtata attcctttgt tatggctgat attccaggga ttatcgaagg
     5701 agcaagtgtg ggtaaaggct taggacttgc ctttttaaag cacatagaaa gaacgagctt
     5761 tttacttttc gtgctagatc ctatgaggca aatgccttta aaagaacaat ttatagtact
     5821 aagaaaagaa cttgaaaaat tttccaatga actttttggg cgtaaatttg gcatcatgat
     5881 ttcaaaaagt gatagtgttc gtttaggaga ggaatttgct gagcaaattg ctttaaacat
     5941 taatgagtta gacaattatc tcaaagaaat aaataatcca caaagctttt taatcaaagt
     6001 ctcaagcctt gaaaaaacag gacttaaaga acttaaattc atgcttttag aagaaattaa
     6061 aactttaaga aataacaaat aaaaatttta acaatctagg aagtgtttta tattaaaaat
     6121 ttcaaacact ccctattttt tcaaaaaata actagtttat atgaaatttt ggctaaaatt
     6181 ataaaaattt ttcaaggaat aagcatgaaa agaatagttg ttaaagtggg ttctcatgtg
     6241 attagcgaag aaaacacttt aagttttgag cgtcttaaaa atttagtcgc atttttagct
     6301 aaactcatgg aaaaatatga agtaatttta gtaacctcgg cggctatttc ggcaggacac
     6361 accaaactag atatcgatag aaaaaacctt attaataaac aagttttagc tgctattgga
     6421 caaccttttt taatcagtgt ttataacgag cttttagcca aatttaacaa actaggcgga
     6481 caaattttac ttacaggcaa ggattttgac tctagaaaag ctaccaaaca cgcaaaaaat
     6541 gctatcgata tgatgataaa tttaggaatt ttgcctatta tcaatgaaaa tgacgctaca
     6601 gctatagaag aaattgtctt tggtgataat gatagtttaa gtgcttatgc tacgcatttt
     6661 tttgatgcgg atttgcttgt gattttaagc gatattgatg gattttacga taaaaatcct
     6721 agtgaattta gtgatgcaaa gcgtttagaa aaaatcactc atattaaaga agaatggcta
     6781 caagcaacca taaaaacagg tagtgagcac ggaacaggtg gtatagtaac caaacttaag
     6841 gcagctaaat ttttacttga acacaataaa aaaatgtttt tagcaagtgg ctttgattta
     6901 agtgtggcaa agacattttt attagaagat aaacaaatag gtggaacttt gtttgagtga
     6961 ttaatttatt aaattctctt ttaaaatcaa ataagctata attaaaactt ttaatttcac
     7021 acaaagcgaa aaaatgaaaa aaattatttt tatgggcact ccatcttacg caacttgtat
     7081 tttaaaagca ctagtagaaa atgaaaattt taaactcgta gcacttttta ctcagcctga
     7141 taaagccgta ggtagaaagc aaattttaac tccaagtgat actaaggctt ttttaagtca
     7201 aaattatcct agtattccta tttttactcc aagttcttta aaagataaaa atattataag
     7261 agagattaag gatttaaatc ctgattttat cgtggttgct gcctatggaa aaattttacc
     7321 taaagtcatt ttggatttag cgccttgtgt gaatttgcat gcttctttac ttccaaaata
     7381 ccgtggtgcc agtccgatcc aaagtgcgat tttaaacaaa gatgaaaaaa gtggagtttg
     7441 caccatgctc atggaagaag ggcttgacac aggtgctata cttgaaagct tagaatgtga
     7501 tataaaagat aaaaattcaa gtgaagtttt tgaactttta gcaaatttgg ccgctaagct
     7561 catcctctct actcttttaa atttcgataa aatcacccct aaaaaacaag aggaaagtct
     7621 agcaacgctt tgtagaaaaa tcaaaaaaga agatgggctt ataaatttgc aaaatgcaag
     7681 agaactttat caaaaatatc tagctttcac cccttggcct ggagttttct tggaaaatgg
     7741 acttaaattc ttagaacttg aacttgtgga tgaattaaaa caaaatgcta agatgggtga
     7801 aattttagaa ttagaaaaag aaagtttttt gcttgcttgc aaacaaggag ttttgcgtat
     7861 taaaaaactt caagaaagtg gaaaaaaagc tcttgatggc aggacttatt taaatggaaa
     7921 aaggcttaaa agtgaagata gtttgtgttg aaagtataga ctcaactcat ctttttttat
     7981 gcgagcaaat acgcaatgga aagattgatg aaaattttgc tatttatgct ttagaacaaa
     8041 caaatggagt tggaagtagg gaaaattctt ggcaaagctc taaaggaaat ttacatcttt
     8101 ctttttgtat taaagaagaa gatttaccaa aagatttacc tttagcttct gtgagtattt
     8161 attttgctta tttacttaaa gaagttttac aagaaaaagg ttctaaaatt tggcttaaat
     8221 ggcctaacga tctatattta gatgataaaa aagctggagg agttataagt gctaaaattt
     8281 caaattttat cataggcggt atgggtttaa atcttaaatt tgcaccccaa aatacagctt
     8341 tatgcgatat agaaatttcg cttaaagatt tagtgagtga gtttttgcaa aaagtagaaa
     8401 aaaaaatttt atggaagaat atttttagca agtatatgtt agaatttgaa aaatcaagaa
     8461 aatttagcgt ccatcatgaa ggtaaagttt tttcacttga aaattctttt ttgtacgaag
     8521 atggttcaat tttactaggc gataaaaggg tgtatagttt aagatgagcg aaattattac
     8581 aatagcaaat caaaaaggtg gagtaggaaa gactacaaca gcagtaaatt tagccgcttc
     8641 tttggctgtg gctgaaaaaa aagtactttt gattgatgtt gatccacaag ctaatgcgac
     8701 tacagggctt ggttttaatc gtaataatta tgagtataat atttaccatg tttttatagg
     8761 aagaaaaaag ctttcagata ttattttaaa aacagaattg ccacaacttc atttagctcc
     8821 ttcaaatata ggtcttgtag gtatagaaca agagcttgct aaaggtgaaa ataatgagaa
     8881 aaaaatgtta cttaaaaatc aaattcaaga agtaattgat gagtatgatt ttattattat
     8941 tgattctcca cctgctcttg gaagtattac tataaatgct tttgcagcaa gtgatagcgt
     9001 aattatccct atacagtgtg aattttatgc gcttgagggt gtagctatgg ttttaaatac
     9061 aattaaaatt atcaaaaaaa ctattaattc taaactcagg gttcgtggat ttttaccgac
     9121 aatgtatagc tctcaaaata atctttctaa agatgttgta gatgatttga aacaaaattt
     9181 taaaaaacaa ctttttacta ttaatggaaa cgaagatgac tttattgtga tccctcgcaa
     9241 tgtaaaactt gcagaaagtc caagttttgg aaagcctata attctttatg atattaaatc
     9301 gccaggttct gttgcttatc aaaatttggc gtattctata ttaggataat tataatgggg
     9361 ttaaataaag ataggggttt aagtagttta atcagtgata tggatactgt ttatagcaaa
     9421 gaattgggtt ttgataaaaa tcaaagcact atgatagaaa ttgatcaaat ttcacccaat
     9481 ccatttcagc caagaaagaa ttttgatcaa gaagctttag atgagcttgc taattctatc
     9541 aaagaatttg gacttattca gcctattatt gtatttaaaa aaaataataa atttatttta
     9601 attgctgggg aacgtcgctt aagagcagtg aaagcattag gaaaaaaaga aattctagct
     9661 tttattgctg atattgatga gaataaactt agagaattgg ctcttattga aaatatacaa
     9721 agagagaatt taaaccctat tgaacttgct aattcttata aggatttgat gcaagttcat
     9781 aagattactc aagagaattt agcagaactt attcataagt ctcgtactca aataacaaat
     9841 actttaagac ttctgaattt agatattaga actcaagagt tgattgcttc tggaaaaatt
     9901 tctcagggtc atgctaaagt tttggttggt ttagatcaaa aagatgaaaa aatgttggtt
     9961 gatagcataa taggtcaaaa acttaatgtt agagatactg aaaaaatagt taaaaaaata
    10021 aaaaataatg aaagcttacc taatcaagaa tttgaagatg aaataaaaaa attaaaacaa
    10081 atactaaatc gctttggatt tgactgcaaa aataaaaata atgattttgt aattcattta
    10141 gaaaatattg ataaaattaa aaaattaatc aaaatgcttg aaaagtttta accaaaatct
    10201 tagctttttt atggtaaaat agtccttcaa aaattctaac caaggagaat tatgtttgaa
    10261 gatatgcatc cttccataat gcttgctact atagctattt ttttggctat gatagttatt
    10321 ttaaatagta tgctgtataa gccgctttta aaatttatgg atgaaagaaa tgattctata
    10381 aaaaatgatg agaataaagt aaaagaaaat tctcaagaag ttttatgtgt gaatgatgaa
    10441 ttagaagtta ttcatattaa cactagagaa gaaattcaaa aaatcaaaca aagtgctata
    10501 gctgctgcta aagaagaggc agagcaaatt cttagaagca agaaagaaga attagaaaga
    10561 aaaatggcca gcttttatgc agatttagct attcaaaaaa aagagttaca agaacattta
    10621 aacatacatt tacctgagct taagcaagct ttgcaaaata acataaagaa aatttaagag
    10681 gagagaaatg agtaagttat tatttattat atttttgcta cctttgtatg cttttggtgc
    10741 atcaaacggt agtggagaat atgatattat tccaaggact attaattttc taatttttgt
    10801 gggtatattg tattattttg ttgcaactcc atttaaaaat ttttacaaaa accgtattgt
    10861 aaaaatttct tctaaacttg atgaaattca aaaaaaactt ttagaaagta aagctaagaa
    10921 attagatacg atgaaaaaac ttgaagaagc taaggcaagt gctgctgccg ctttaattac
    10981 agcaaaaaaa gaagctgaaa ttttagttca aaatattaag aaagagactc aagatgagtt
    11041 agatttactt caaaaacatt ttgaggaaca aaaagattat gaatttagaa aaatggaaaa
    11101 agaattagta tcaaatactt taaatgaaat tttttctgat ccaaatatga cattaaaaca
    11161 gagtgaaata atagaactta tgatgaagaa ggtatcttaa atatggaaaa tataattgca
    11221 agaagatatg caaaagcgat agcttcaaga gctgatataa atgattttta tcagaatttg
    11281 tgtattttaa attctgcttt tgttttgcca aaatttaaaa atattataaa atctaatgag
    11341 attaaaaaag aaagaaaaat ggaatttctt gattcttttt t
//
LOCUS       DARGED010000042        11236 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.042, whole genome shotgun sequence.
ACCESSION   DARGED010000042 DARGED010000000
VERSION     DARGED010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11236
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.042"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            16..723
                     /gene="ubiE"
                     /locus_tag="SFZ84_000902"
     CDS             16..723
                     /gene="ubiE"
                     /locus_tag="SFZ84_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG8203025.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            720..1883
                     /locus_tag="SFZ84_000903"
     CDS             720..1883
                     /locus_tag="SFZ84_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG8203026.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            1893..2969
                     /gene="serC"
                     /locus_tag="SFZ84_000904"
     CDS             1893..2969
                     /gene="serC"
                     /locus_tag="SFZ84_000904"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG8203027.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            2966..3316
                     /locus_tag="SFZ84_000905"
     CDS             2966..3316
                     /locus_tag="SFZ84_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8203028.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3313..4287)
                     /locus_tag="SFZ84_000906"
     CDS             complement(3313..4287)
                     /locus_tag="SFZ84_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG8203029.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4280..5266)
                     /gene="plsX"
                     /locus_tag="SFZ84_000907"
     CDS             complement(4280..5266)
                     /gene="plsX"
                     /locus_tag="SFZ84_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG8203030.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5272..5418)
                     /gene="rpmF"
                     /locus_tag="SFZ84_000908"
     CDS             complement(5272..5418)
                     /gene="rpmF"
                     /locus_tag="SFZ84_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG8203031.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5442..5795)
                     /locus_tag="SFZ84_000909"
     CDS             complement(5442..5795)
                     /locus_tag="SFZ84_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203032.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(5796..6209)
                     /gene="ndk"
                     /locus_tag="SFZ84_000910"
     CDS             complement(5796..6209)
                     /gene="ndk"
                     /locus_tag="SFZ84_000910"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG8203033.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            complement(6322..6606)
                     /locus_tag="SFZ84_000911"
     CDS             complement(6322..6606)
                     /locus_tag="SFZ84_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8203034.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            6812..7408
                     /locus_tag="SFZ84_000912"
     CDS             6812..7408
                     /locus_tag="SFZ84_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG8203035.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            7527..8615
                     /gene="flhB"
                     /locus_tag="SFZ84_000913"
     CDS             7527..8615
                     /gene="flhB"
                     /locus_tag="SFZ84_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG8203036.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(8621..9364)
                     /gene="motB"
                     /locus_tag="SFZ84_000914"
     CDS             complement(8621..9364)
                     /gene="motB"
                     /locus_tag="SFZ84_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG8203037.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(9367..10143)
                     /gene="motA"
                     /locus_tag="SFZ84_000915"
     CDS             complement(9367..10143)
                     /gene="motA"
                     /locus_tag="SFZ84_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG8203038.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLVEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            complement(10160..>11236)
                     /locus_tag="SFZ84_000916"
     CDS             complement(10160..>11236)
                     /locus_tag="SFZ84_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG8203039.1"
                     /translation="IKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGY
                     STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGT
                     ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEK
                     LLNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLA
                     KSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERES
                     INSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM
                     ENIVKLKVKLKTSSSIAKNWGDLK"
BASE COUNT         3694 a         1697 c         1835 g         4010 t
ORIGIN      
        1 ttacaaagga taaaaatgca aaaacaagaa aaaattatag aaatgtttaa tcaaattgca
       61 cctacttatg ataaggcgaa tagaatttta agctttggag ctgatgtagc gtggcgcaaa
      121 aaagcttgtc aaagagtgat gagtttgtat ttaaaaaaag atttaaaaat cgctgatatt
      181 gcttgtggca caggggatat gatagagatt tggcaagaga gtgctttaaa aatggaaaaa
      241 aatattttaa atattaaagg cattgatcca agtagtggta tgctaaatgt tgcaaaagaa
      301 aaatttccaa atgtcgaatt tatagaagca ggggcgcaaa atttaccttt agaaagtcaa
      361 agtttagata ttttaagtat tagttatggc attcgcaatg ttgtagaaag acaaaaagcc
      421 ttaagcgaat ttgctagagt acttcaaaaa gatggtattt tggtagtttt ggaatttaca
      481 aaaagagaaa agggtggatt tatagcagct tgtagagatt tttatcttaa aaatatttta
      541 ccaagtatag gtgggataat cagtaaaaat aaaagtgctt atgagtattt gccaaactct
      601 attgaaggat ttttaagtaa ggaagagttc atcttagaac ttaaaaatgc tggttttgaa
      661 atacttgatt ataaaagttt tagctttggc gtgagttcaa tgtttatagc aaaaaaacta
      721 tgacaccaac agaattaaat cttaaagcaa aggctttatt agaaacacat tttgatgata
      781 tagttttaag tggagaaatt tcaaaaatta ctttgcatgg ttcaggacat tggtattttg
      841 atttaaaaga tgaaagatca agcattgctt gtgctatgtt taaaggagct aatttaaaag
      901 tcggatttaa accagctgtg gggaattttt tagagctttg tggaagtgta agtttatatc
      961 ctgaaagtgg tcgttatcaa tttatcgcta ctagtatgaa aaaagcaggt tttggggatt
     1021 tggaagcaca gtttttggct ttaaaagagc gtttgcaaaa agaaggactt tttgatccac
     1081 gctttaaaaa atctttgcca aaatttccta aaaaagtagg cattatcact tcaaaaactt
     1141 ctgctgcttt gcaagatatg ttaaaactta ttcaccaaaa agaatatttt ttggcaaaaa
     1201 tttatatttt tgatgcttta actcaaggaa ataatgctcc tttttctctt atacaagctt
     1261 taaaaaaagc cgatgatatg gatttagatg ttcttattat agcacgtggt ggaggaagca
     1321 gagaagatct tttttgtttt aatgatgaaa atttagcaag agagattttt aaagcaaaaa
     1381 ctcctattat ttcagccata ggacatgaga ttgattatgt tattagtgat tttgttgcag
     1441 attttagagc tccaacgcct tcagctgcta tagatacttt gttttattct aagttggata
     1501 tagagcaaag tttggattta atggaagaaa aattaatgca actttggaat tataaaatac
     1561 aaaattatga aaatttgctt ttaaatttaa gcaaattttt caaatttaat tctttgccaa
     1621 aaataataga tgaaaaaata aaacaaagcc ataatataga aaagcaatta aatcatctat
     1681 tggcaaatca aatgcgttat aatgaattaa aattagataa attgcaaaat gcttatttgc
     1741 aacatgagaa tttttttaat aaaagcaaaa agtttatttg tatcagaaaa aatggtaaaa
     1801 tagcaaattt agaagatctt aagagtgatg atatcgttat tttaagttct caaacttctc
     1861 aaaaagaagc aaaaatttta taaggataga ttatgagaaa aatcaatttc agtgcagggc
     1921 catcgacttt acctttagaa attttagagc aagctcaaaa agaactctgt gattatcagg
     1981 gtaggggtta ttctataatg gaaatttctc accgcacaaa agtatttgaa gaagtgcatt
     2041 ttggagcaca agagaaagct aaaaaacttt acgggttaaa tgatgattat gaagtattat
     2101 ttttacaagg tggagcaagt ttacaatttg ctatgattcc tatgaatttg gctttaaatg
     2161 ggatttgtga atatgcaaat acaggagttt ggacaaaaaa agcaattaaa gaagcacaaa
     2221 ttttaggtgt caatgttaaa accgtagcaa gtagcgagga aagtaatttt aatcatattc
     2281 ctagagtgga atttagagat aatgctgatt atgcttatat ttgttctaac aatactattt
     2341 acggcactca atatcaaaat tatcctaaaa ctaaaactcc tttgattgtg gatgcatcga
     2401 gtgatttttt ttctagaaaa gtagattttt caaatattgc tcttttttat ggcggagtgc
     2461 aaaaaaatgc tggaatttcg ggtttaagtt gtatttttat ccgtaaagat atgttagaaa
     2521 gatctaaaaa taaacaaatt cctagtatgt taaattattt gactcatgct gagaatcagt
     2581 ccttgtttaa tacgcctcca acctttgcca tttatatgtt taatcttgaa atggattggc
     2641 ttttaaatca aggcggactt gataaagtac atgagaaaaa ttctcaaaaa gctgctatgc
     2701 tttatgagtg tattgattta agtaatggat tttataaagg acatgcagat aaaaaggaca
     2761 gatctttaat gaatgtgagt tttaatattg ctaaaaataa agatttagag cctctttttg
     2821 taaaggaagc cgaagaagct ggaatgatag gacttaaagg acatagaatt ttaggaggaa
     2881 ttcgtgcaag tatttataat gcgcttaatt tggatcaggt aaaaaccttg tgtgaattta
     2941 tgaaagaatt tcaaggaaaa tatgcatgat aaagcgtttt gatgagtgcg atagaatgtc
     3001 gcaaattatt gtttttgata aatattttaa gactgcagga caagtggctt ttgaacctag
     3061 cggagatatt aaaaaacaaa ccaaagaagc acttgcagaa cttgatgctt tgtttgaaaa
     3121 aataggcgca agcaaaggag atttgattca aattcaaatc tggttagcta atatgcaaga
     3181 ttttgatgca atgaatgaaa cttatgatgc ttggattaaa aattatccta aacctgttag
     3241 agcttgtgta ggaagtgctt tagcagaggg ttatttggta gaaattcaag cttttggaaa
     3301 gctaagagag aattaaaaat tctctcctcc aaattttaaa agcgcagatc cccaagtaaa
     3361 accaccgcca aaagcatcta gtaagatcag atttcctttt ttaagtcgtc cttcttcata
     3421 ggcatcattc attgccatag gtatagaagc agctgaagta ttgccatatt tttgtacggt
     3481 aatcacacat ttttcatcgc ttagattgag tttttcttgg acggctttaa tgatgcgtag
     3541 attagcttga tgaggaataa aaagatcaat ttcttgtgct aaaatgttat ttttagctaa
     3601 aatttctaca acatcattgc taagcgtgtt tactgctatt ttaaaaactt cattgccttt
     3661 catttgcata gaaagtgttt gacatagact tgatttttgc gatctttgag tcattaaaag
     3721 atctccataa ttaccattgc ttgcagtatg tacatcaagg atatgatttt cattgtccaa
     3781 acttacaact ccagcacccg caccgtctcc aaagagtatg caaatgcttc tgtcattgta
     3841 atccataatt gaacttgttt tttcagctcc tacgattaaa acattttttt tcaaaccact
     3901 ttctactaag gctttagctt gttcaagcaa atagataaaa ccagaacaag ctgctgaaat
     3961 atcaaaagca ctaatattta caagtcctaa atttgaagca attttacaag ccgttgaagg
     4021 catagtaaaa taatcaggac ttaaagtggc tacaagaatc gcatcaatat cttcaggttt
     4081 taaatttgct ctttctatgg cttttaatgc agcttttgtg cccaaatcgc tagaattttc
     4141 attttcacta gcaatgcgtc tttctttaat acctgtgcgt ctagtgatcc attcatcggt
     4201 ggtatctact attttttcaa gatcagcatt gcttaaaatt ttttctggaa tataagaagc
     4261 tatactttta agaccggctt taagcattgt atttcccaag ttcattttct ataagttcat
     4321 tgatatgaga ttggctaaaa tttatagctt gaaaaattgc atttttaata gctctagaat
     4381 cactttttcc atgacttatg atcacgcagc cattaactcc aagaaggggt gctccgccat
     4441 attcttgcca atctgtgtgt ttttttaatt ttttaaaaga tgacttcata agtaaagcac
     4501 ctattttaga aataaaagat tgctttactt cgttttttag aagctgaaaa atagctgttg
     4561 ctacaccttc acaagccttt aagataacgt ttccatcaaa accatcgcag actaaaacat
     4621 ctatttcacc attgaaaata tctctacctt cagcattacc tataaaattt ggaatttttt
     4681 tcataagctg atgactttct ttggtaagtt cattgccttt gcattcttct tcaccattag
     4741 aaagtaaagc aaggcgtggt ttttgaattt gcataatttc tctagcataa acttcaccca
     4801 ttatggcaaa ttgaaataaa ttttcagctt tacaatctgt attagctcca acatccaaaa
     4861 gtaaagttct gttaacgata tttggcatta aagtggcaat agcaggtctt gaaatacctt
     4921 taagtcttcc aagccttaag gtagccaaag acatacttgc tccactatga cccgctgaaa
     4981 ctacagcatc tacttttttt tcttttaata aattaatagc tttgtatatg gttgtttctt
     5041 tattttttaa agcatctgtg gcatttccat tcatcgaaaa aatttcacta gcttcttcgt
     5101 attgtatata ttgttctaat ttttttggta ttaaaggttt tagaatttta gaatttccca
     5161 ctaagatagc gttaaaaggt tttgcttcta gtgcctttaa aacgccttct ataatgggtt
     5221 tttctccaaa atcaccaccc attgcatcaa tggcaatgtt aatcattgat tttaatattc
     5281 cttagttgtt ggattcgcac ggtgaggcat tttgtagctt ccatctttgt cttttatagg
     5341 cataggaaga ctaactttat agtgagttct gcgtttagct gcacgagttt tgctcactct
     5401 tctctttggt actgccattt tttctccttt ataaaattta attaattatt gcaatttatg
     5461 caataaaaat aatcactcaa ataagcttca agctcgctaa tagcaacttc tattaaatca
     5521 atatgtccat caaaaaattc tatagtattg ctcaattcgt ttgcttcatc tttaaaaata
     5581 ccatcacttg caaaaagttc taaattttct ttaatttcaa gttctaactc agttccacaa
     5641 ctatcacaag gtctatagat aaaaccttgc ataatagcat ttattttaac aagcttagga
     5701 tttattttta ctaaatttcc ctcaaaaatc atattttcaa gattaagttt aaaaggatat
     5761 tcctttgtat taatcttaga aaaagggatt ttcatttagc aaatttcatt tggtttaaag
     5821 aaaaaatcaa tttctatttt tgcattttcc aagctgtcac ttccatgaac agcattagca
     5881 tcaatactct cagcaaaatc ggctctaatt gttcctgctt tagcttcttt aggatttgtc
     5941 gctcccatta aatctctatt ttttaataca gcaccttctc cttctagtac agaaacaaca
     6001 acaggaccgc taatcataaa ttcaaccaag tctttaaaaa aaggtctttc tttatgaaca
     6061 gcataaaaat tttcagcttg ttctttacta agttgaactt ttttcattgc agcgattctt
     6121 aatccattgc tttcaaaacg atctaaaatt tttcctataa cacctttttt aacagcatca
     6181 ggtttaatta tagataaagt tttttccatc tttgtaataa ctccttattt taataaagct
     6241 taaaattata cttgaatttg tttaaagaaa gttaaattaa aagaaaaagc taggaatctc
     6301 tagcttttta attttttaaa attatgcaaa aactggagtg tccccacttc tcatatcagc
     6361 gccaatatta tcacgacttg gttgtcctga ttctacagca ctccaaacta tacatccatc
     6421 tgttgggcaa gcactggcac aagctggttg atcattatgt cctacgcatt caacgcattt
     6481 gtttgcataa acataatatc tatcttcacc ttctggattg ttagcatcat caacgatagc
     6541 actcactgga cactcatcaa tacaagaacc acaagcaata catatatctg taatttttac
     6601 agccattttt tctccttttt aatattaaga tttaaaagat tttagcataa aattcttaaa
     6661 taatgtaaat tttgataatc aaaaatttac attatttgat aataattata actttcttaa
     6721 atttttaata ttattttaga tatttaaaaa aaaataaaga tttaaacgat ataatttcgt
     6781 tatcaataaa atttattatt taggagaaaa tatgatagtt actaaaaaag ctttagattt
     6841 tactgctcca gcagtattgg gaaacaatga aattgttcaa gattttaatc tttataaaaa
     6901 cataggtcca aaaggagcgg tagtattctt ttatccaaaa gattttactt ttgtttgtcc
     6961 ttcagaaatt atagcttttg acaaaagata tcaagaattt aaaaatcgtg gcattgaagt
     7021 aattggaatt tcaggagata atgaattttc acattttgct tggaaaaata ctccagtaaa
     7081 tcaaggtggt attggtcagg ttaaatttcc gcttgttgct gacttaacta agcagattgc
     7141 tagaaatttt gatgtacttt atgcagaagc agttgccctt cgtggttcgt tcttgcttga
     7201 tgctgatgga acagttcgcc atgctgtggt taatgattta ccactaggta gaaatataga
     7261 tgaaatgtta agaatggttg atactatgct ttttacaaat gagcatggtg aagtttgtcc
     7321 tgcaggatgg aataagggcg atgaaggtat gaaagctaac cctaaaggcg tggctgaata
     7381 tcttggcaaa aacgaagcta aactttaatt tcttagtata aagcctcttt acgaggcttt
     7441 ttcttcattt ttattcttta attgaaattc ataaattttc tactataatt ttacacacat
     7501 attaaaattt ttatttaggc taaaatatgg caggcgaaga tcaagaaaaa acagaagaac
     7561 ccacgtccaa aaagatagaa gatgcgcgta aagaaggtaa tgttccaaag tctcaagatg
     7621 cggcagctat tgtaactttg ataattggag taactataac tttatttatg atgagtttta
     7681 tgggcgagag aattgtaaat ttatatagat actatcaaag ttttattggt gttgaatttg
     7741 atttgcgtat tattcaagcc attatgatta aaagcatttt tgaggtttta attattcttg
     7801 cacctattgt tttaagtatt atgattgctg gggttttggg aaatattatg caatttggtt
     7861 ttatttttac aactaaacct attatgccaa atttaggaaa aatcaatcct ctaaaaggtt
     7921 taaaaaacct tttttcattg aaaaaaattg ttgaaagtat aaaaattatt ttaaaagtgg
     7981 gtattgtttt tactatagct tttatagttt tacttaaatt tatgcaagag cttccaagag
     8041 ttgagcttta tactatggtt gcacagctta cttggctaag agacagagct attgttttag
     8101 cagctattgt tatagttgct tttttaatta ttgctgtttt agatgttttt ttggtgcgtt
     8161 ttcagtattt taaaggtttg cgtatgagca aacaagaaat aaaagatgag tataaacaaa
     8221 tggaaggaga tcctcaggtt aaaggtagaa ttcgtagact tcaaatggaa gctgcgcgtc
     8281 gccgcatggt tcaagatgtt gcaggtgcgg atgtggtgat cacaaaccca acgcattatg
     8341 ccgtagctat tcgttatgat acaagtaaag aacaagcccc tagggttgtt gccaaaggag
     8401 tggattttct cgctcttcgc ataaaacaag tagcctatga aaataatgtt gtagtttatg
     8461 aaaatcctcc tttagcaaga gagctttata aagcttgtga tgttaatgat cttattccta
     8521 gggaaatgtt taaagctgta gctgaggtgc taggatttgt ttataataca aataataaga
     8581 gtcgtttagc tggtcaagta aaaaaaggaa actaaaactt ttaaggtgct ttagttccta
     8641 ttttattgat aagttcaaga actgattttt gagtgcttgt atctgctgta tcgactttaa
     8701 aatatatttc tactctatta ttttctagag cttgtggatt tccattgata ggattattaa
     8761 gcccgtagct tttaatgcta atatttttca aatttgctcc accttctata aaatatttta
     8821 atacattttc cgctctttgg taggcgagtt cataacttct tataatagag tcgctattgt
     8881 ctgtatagcc tctaatttct atttttgctt gaggtggcaa atatgttgtt agctcagcca
     8941 tacgttttaa ataatcttgt atatcagctg aaacgatttg agcactacct ctttcaaatt
     9001 caactttaga tggaaggtta agagcaacct gattatcgct ttgatctaga gctgcttgaa
     9061 gacgtttgat agtttcttgc tgtgtcatag tcatttgttt taacgatttg agttcatcgc
     9121 tttcttcttt tgctgcgcct ttatattttt cttgggtttt actctcttct ttgactgttt
     9181 gagtagaggt gtaatcaaag attttaacaa attcagtttt taaagcctct actttagcag
     9241 gatttgtttt agaaattgcc caaagagcaa taaaaagtgc caaaagcaaa cttagaaagt
     9301 ccgcataagg tacagcccat ttttcgcctg ctggacattc tgggcattta tgttttttag
     9361 ccatttttaa cctttgtcaa attgtgaaat tcttggatca tcgtgactta agaagttaaa
     9421 aagtttagct tctaaatctc taggattagc accttctgca attcctttta tagcttcagt
     9481 aatgacaatt tgctctttta caagatccat tccattagct tttaattttt tcccccaagg
     9541 agcaaaaagt gcataagcgc caaaaattcc cgtaactgta gccgtgaaag cacctgaaat
     9601 acctgctgcc attgcttgag gattgtctag taatttaaga gctaaaataa gtccaaaaac
     9661 cgctccaaca agccccatgg taggacaagt ctctccaaat actatccaat attctgcaca
     9721 ttctttataa tgctcttcaa gttgttcagt ttgtatttcc atgctttcat gaatttcttc
     9781 aaagctttta ccatctacaa gcatcatcat agcatttttt aaaaattcat tttcaatctc
     9841 actggttctt gattctaacg ctaaaagacc atctcgtctt gcaataatag caaattcgac
     9901 tagctgggct atcctttcgg gtaaatttac tccagaacct ttaaaaacaa ctttgagttc
     9961 tttgtaggct gcttttacaa tttttttatg cgtagaagtc attgcgcaaa atgcagctgt
    10021 tggcataact atgagaaagg aagaaagatg cacaacatgc aaaggattgc ctccctctag
    10081 tatatctcct accgaaatac tagtaactgc aagcaccatt cctaatatgg ttgaaagatc
    10141 cattaattta tctccttgat tattttaaat cgccccaatt tttggcgata cttgaacttg
    10201 tttttaattt tacttttaat tttactatat tttccataat atctctagtt ttttttacaa
    10261 aattttcaca caaatcgtct tttacttcaa aaattaattc atcatgaatt tgtaaaataa
    10321 gctttttatc ttcatttaat tccttattga tttctagcat tgcaagcttg attacatctg
    10381 ctgctgagcc ttgcaagatt gaattaatgc tttctctttc atacatggca atttgcatag
    10441 gttttgcgtt ttcaaaatca aaataacgct tgcgaccgct taaagtagtg ataaagccat
    10501 tttgtttagc ttcattttta actgtttcaa aatatttttt aatactagta aaattttcaa
    10561 aatatttttc tatgtaagat ttggctaaat tagcttctat ttttaaattt tgacttaagg
    10621 ttttatagcc cataccataa ataagtccaa aatttatact ttttgcaaca cttctggttt
    10681 cataattgct ttcaccaaaa atcattattg ctgttcttgc gtgtatatct tcatcattgg
    10741 caaaagcatt taaaagtttt tcatcttcgc taaaatgtgc aagtattcta agttcgattt
    10801 gagaataatc aagagagata aaactaaatc catctttagc tacaaagcaa gatttataat
    10861 cttttgcata ttgtccgtgt gcagggatgt tttgcaaatt tggatcctta gatgaaagac
    10921 gtcctgtagc ggttccagtt tgtaaaaaac ttgaataaat gcgtgaattt ttatctttta
    10981 acgctagttt taacaaaggt tcgcaataag tggaataaag tttggcaagt tctctataat
    11041 ctaaaatttt agcaattaca ggatgtttat ctaaaagtat atttaaaact ttttcatcgg
    11101 tagaatatcc tgtttttcct ttttttccgc ttgggagttt gagtttttca aaaagtatat
    11161 cacccatttg tttaggtgaa tttagattaa atctatcctc gcaaagagta taaatttctt
    11221 cacttaaatt tttgat
//
LOCUS       DARGED010000043        11082 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.043, whole genome shotgun sequence.
ACCESSION   DARGED010000043 DARGED010000000
VERSION     DARGED010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11082
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.043"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..480)
                     /locus_tag="SFZ84_000917"
     CDS             complement(<1..480)
                     /locus_tag="SFZ84_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8203040.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYHLFRIFAYIVLGIIFGAFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     "
     gene            complement(477..1595)
                     /gene="carA"
                     /locus_tag="SFZ84_000918"
     CDS             complement(477..1595)
                     /gene="carA"
                     /locus_tag="SFZ84_000918"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEG8203041.1"
                     /translation="MKAYIYLENDIFLSTKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(1595..2146)
                     /locus_tag="SFZ84_000919"
     CDS             complement(1595..2146)
                     /locus_tag="SFZ84_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG8203042.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILSERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(2239..2757)
                     /locus_tag="SFZ84_000920"
     CDS             complement(2239..2757)
                     /locus_tag="SFZ84_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG8203043.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(2750..3178)
                     /locus_tag="SFZ84_000921"
     CDS             complement(2750..3178)
                     /locus_tag="SFZ84_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG8203044.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKEFAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(3175..4425)
                     /locus_tag="SFZ84_000922"
     CDS             complement(3175..4425)
                     /locus_tag="SFZ84_000922"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG8203045.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(4453..4550)
                     /locus_tag="SFZ84_000923"
     tRNA            complement(4453..4550)
                     /locus_tag="SFZ84_000923"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4514..4516),aa:Sec,seq:tca)
     gene            4690..5898
                     /gene="yedE"
                     /locus_tag="SFZ84_000924"
     CDS             4690..5898
                     /gene="yedE"
                     /locus_tag="SFZ84_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG8203046.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            5902..6129
                     /gene="yedF"
                     /locus_tag="SFZ84_000925"
     CDS             5902..6129
                     /gene="yedF"
                     /locus_tag="SFZ84_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8203047.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(6145..7614)
                     /gene="putP"
                     /locus_tag="SFZ84_000926"
     CDS             complement(6145..7614)
                     /gene="putP"
                     /locus_tag="SFZ84_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG8203048.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(7632..11030)
                     /locus_tag="SFZ84_000927"
     CDS             complement(7632..11030)
                     /locus_tag="SFZ84_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG8203049.1"
                     /translation="MQKLLNNPKNKVMLIELLDRSFRCKDKNASFELIEYTLSKYGIA
                     DFFSTFEKFLLFSFLNFGKFAPNLSVPFFVKHLREDTKAMVLDANPSVLEPHIKKRKE
                     QDKITLNVNLIGEEVLGEAESKYRMQKYEEALKSSYITYISIKITTIFSQINIIDFNY
                     SKEEVVKRLDYLYALALEEEKKQGVSKFINLDMEEFRDLELTVAAFMESVAKFDIKAG
                     IVLQAYIPDSYKYLKKLFAFSKERVLKGMKPIKIRFVKGANMESEETIASQRGWELPT
                     FYKKIDTDSNYNKMLDFILEGDNYKYINIGIASHNIFEIAYAYTRISEVGALDSFTFE
                     MLEGMSLQCSYELSKMHDLILYAPVCDEAHFNNAIAYLVRRLDENTSEDNFMRYFFNL
                     KVGDKNWNIQKELFLKSLQGIKTLDNTTHRKQDRNKESNIISSYESKKFSNESDTDFI
                     LVQNRAWAKEIKTKYENLKDYDVYPVIGELDFKAENLNVLEVKDKIKDRVIGKAYLAG
                     EKEIKQALEVAKNSKFTQKSHDEIYQILAKSAKLMRERRGDLIGLAALEVGKTFLEID
                     PEVSEAIDFIEFYPHSLEELKKQNPKVTFTPKGIGVTIAPWNFPIGISVGTIAAPLAA
                     GNVVIYKPSSLSTLTGYMLCKCFWDSGIPKDALIFLPSKGSDISKYLLIDEAIKFSIL
                     TGGEDTAYAMLKANPTLLLSAETGGKNATIVSKFADRDSAIKNIIHSAFSNSGQKCSA
                     TSLLVLEEEVYHDEEFKKTLVDAASSMAVGNPFEFKNKLGTLADKPSSKVQKALDELQ
                     PYEEWALKPKFLEDNPYLMTPGIKYGTKKGDFTHMNELFVPILSVMKAKDLKEAIDIV
                     NSTGYGLTAGFESLDEREWEYFHTHIEAGNIYINKPTTGAIVLRQPFGGIKKSAIGLG
                     RKVGIYNYITQFLEIKQEDFDDHLIEDKFSKKLAQIDLKEAQDFINNLIKMSQSYAYH
                     YKNEFSVSKDYVNIRGEDNLFSYTKIKNMVLRLCGNESLKDVLGVVLGANIANIDLSI
                     SYDEQDVSMIERIVQSIGAKVLFLKENKENFIKSIKEYERVRYLAKPDVNDEIYKEAA
                     KLAKIIIREKPLLNGRFELLNYFNEKALSISFHRYGNLGIRAIS"
BASE COUNT         3675 a         2065 c         1369 g         3973 t
ORIGIN      
        1 aaaaatattt tgcttactca ttgcattggc tataaaaaaa tacaccaatc cacaaggaac
       61 aaaaccattt gaaaatccta aaaatatggc tgattttaat cctttaaaat ttttagattt
      121 tttaataatt ttctttacaa aactatcaaa aaaaacatta ttttcaataa aagataacat
      181 attgcctcta aaaataagag caaaacccaa aatcatcata aatataccaa gaataaaaaa
      241 tgacaaactt tgaaccttag cattgattgc caagatattc ccaaaagccc caaaaattat
      301 ccctaaaaca atataagcaa aaattctaaa caaatgataa ataaaagtta ataaaaataa
      361 attattgctt tttgaattca aatttataaa aagtaaatta aaaccaccac acatagaata
      421 gcaatgtcca aaactagata aaaaagcaac gctgataata gctaaaaaat ctatactcac
      481 atcaaattca taaattcttt aaaaatatac ttactttcat gaggacctga agaactttct
      541 ggatgatgtt gtactgaaat aataggatag tctttatatc ttactccttc aacattatcg
      601 ccaaataaat ttctatgagt gatatgagcc acttgagcta attcttctgg aacattataa
      661 ttatgatttt gtgcggtaat ttctaccgtt tttgtatcaa gattgatcac aggatgattt
      721 gctccatgtt gtccaaattt cattttataa gtttcatatc caaaagcatt acttaaaagc
      781 tggtgaccta agcaaattcc aagcatagga attttagctt ctgcaagttt tttaatctct
      841 gcaatctctt gttttaaaat ccttggctca cctggaccat tagaaagaaa cacgccttga
      901 atttcacctt ttttatacag agtaatcaac tcatctgctt taacattata tggataaact
      961 tctacttcaa aacctacttc tacaagttca tttaagatat ttgttttaac accataatct
     1021 ataacagcaa cttttttctc acttctttta gcatcattaa atttttgaaa actagcgttc
     1081 caaacgcctt gtttatgaga ataatttttc ttagtgctaa cttcttttac aaaatttact
     1141 tcatcaattt ttgctgattt ttctaaggcg atttttaaat cttctttatt tgaaatttca
     1201 gttgaaatta cagctcttaa attgccatta tttcttatca tttttactag atatctcgta
     1261 tcaagttcat aaattcctat ttttccatgt ttttcaagat aatcttgtaa actttcttta
     1321 gcgcgaaaat ttgaaaaact agaacttaat tcacgcatta aaacaccact tgcaaaaatt
     1381 tccttacttt cattatcatt ttcattggtt cccactatac caatttctgg catggaaaat
     1441 acgataaatt gccccgcata agaaggatct gaaataattt cttgataccc tgttaaagaa
     1501 gtgttaaata caagctctcc aaaaaaagta ccgctctttc caaaagcctt agtacttaaa
     1561 aaaatatcat tttctaaata aatataagcc ttcattaaaa catacctttt tttctgagct
     1621 cttcttgata gagtttttca aagataagat cgtattcttc gctacctgga ataggttttg
     1681 ttttataatt gctaattttc tcataaacct catcttcaag tttttcataa attttaagat
     1741 aagactctat gcttgaaaag attaaatttt taactctatt ttcactcact ataaaattaa
     1801 tataatcatt ctctacaagt tcttctaaaa tttgatgcgc tagatgatta tgtctatctt
     1861 cagaatctaa aatcacatta aattcaggag ctaacttttt cttcacaagc caaaacatat
     1921 ttttacgatc tacttgcata agctccattt catcttcttg ttgctctaaa agctctttta
     1981 ctctttcatc taattttctt tcacttagaa tatctttctc taaaacttct attatacata
     2041 ccttaagctt ttctaattga tctttaattt ctacaaaaga agaattagct atatctaaca
     2101 tcattttatt tgcgatataa ggaatatgtg gtaattttat acgcatctta aaaacctttt
     2161 atttgataat gtttgaaata atagcttatt tttggtaaaa gaatgttaaa aatgaaaaat
     2221 tttcattatt ttaatcacct aattactagc attattatct aaatttttca aaagcaaagt
     2281 aagctcgcta gctttttttg gatccatttt agataaaaca cctgaaattt tacgcgattc
     2341 caaagaaagc attattttgc ttgcatcctc tgcatccatt tgacttaaaa catctgcaat
     2401 ggctgcatct ttcatttggg aataaatttc tttaacccta ccttgagttt tatcattgat
     2461 tgaatttaaa atcttttgtt gttcttctac aagccttgcg ttttcaagct ttaattcttc
     2521 aatttttgcc aaagttgcat taacctcagc ctcttttttt tctaaatttt caagcctttc
     2581 tttttgcaaa gcttcaaaag aggctttata agcttctaaa gattgtcttg cttcatcaaa
     2641 ttctctagtt tgcaattcaa tttgagcttt tctagcttca aaatactgct cacaatcttg
     2701 ttcagctcca aaaactacac ttgaaataaa aactaacaat ataaattttt taatcatctt
     2761 tttctccttt gaaaaaacga ctgattgcaa tttcatctaa aaatttttct tcagccttag
     2821 caaattcttt ttgcttttgt ttaatttcct cggcttctaa aaccttcatt ttttcataat
     2881 ctaaatgtgc tttttgatat aaaaactgat aatgattcat ttctttttta gaaagttcta
     2941 ctttctcctt agctcttgcc aaagcctcgc gtcctacttg tgccatactt aaattcgatc
     3001 ttaactctgc tatagatcct gattttggca atacgcctaa actttcacac tcttggcgtg
     3061 aaagttcata agctttttca tgttcaagct gtctttgttt ggcttgatta agatttgatt
     3121 ctgctttatc aagttgttgt tttcttacct ttacaacaga attatattta cttttcataa
     3181 gatgatagta tcatctcttt cagggctagt agaaatatac tttaccttaa cccctgcaag
     3241 ctcttcaagt cttgctatat attttttagc attttctggc aataaatcat aatcttttat
     3301 accaaaaact ttatcccaac catccatttc ttcataaata ggttgaacat tttctaaatc
     3361 acttggtata tagtcgattt ccataccctt atattcataa gcacgacaaa tttttatctt
     3421 ttcaaaacca tctaaaacat caagcttcat caaagataaa gcatcaagac cattaagcct
     3481 tgctgtatat cttacagcaa ccgcatcaaa ccatccacag cgtcttttgc gtcccgtgct
     3541 tacgccaatc tcttttccaa tttgcgcaat tttttctcca tcttcgccct tatcctcagt
     3601 aggaaaagct ccatttccca cacgcgttgc ataagctttt acaataccta taatatttcc
     3661 cgcttcttta ggatttaacc caagtcctgt taaagcgcct gctgaaatag tacttgaact
     3721 tgtaacataa ggataagttc catgatcaat atcaagcata gagccctgag ctccttctaa
     3781 aagtactctt ttatcttcat ctaaagcctt ccaaagcatt cttgtagtat ctgtaatata
     3841 aggagttaaa atttcattaa aacgttttaa atcagcaagc aattcttcag cacttggaat
     3901 ttcaatttca agcatttcaa aaaaagtttt attagcttca aaatctttta tcaaagcctc
     3961 gcaaagtctt tgtggttcta aaagctctcc aactctatgt cctgtacgat taatcttatc
     4021 tgcataagaa ggtcctatac ccttacctgt tgttcctatg gcatttttgc ctttgagctt
     4081 ttcttttgca atgtctatta aagaatgatg ttttaaattt aaatgagctc tatcgctgat
     4141 atataatcta ccttttaaat tttcaaattg agccatttca gcaatcaata cttcaggaga
     4201 aaccacaact ccatttccga taatattaat acatcttgga tgcaaaactc cacttggcat
     4261 aagatgaagc gcatatctta caccatttac ccaaatcgta tgtcctgcat tgtgtccacc
     4321 tgcacttctg caaacaaaat cataattttc acataattta tcaactacct taccttttcc
     4381 ttcatcgccc cattgaatgc cgacaataat atctgctttg ctcataaaaa tttccttgat
     4441 tttacttaat attggcgaga agatgagaga atcgaactcc ccaaagaata gtcaactatc
     4501 ctttcatctg atttgaagtc agtggcgatc accagatacg ctaatcttcc aaagtgataa
     4561 ttatagcgat ttttaatgaa aaacaaaata aatttatcaa tattcttttt gacttcatat
     4621 taaatttaag ctataatctc actctttttt agcatcaagt tttgatgatt acatttttag
     4681 gatctttctt tgaattcttt taaacaaaaa tatttaatca atttttggga caattcccgt
     4741 tctatgattg cacttggaat tttaagtgca gtgtattttg ggatttttgg tggcgtttgg
     4801 gctgttactg gagaaatgac acgttggggt ggcgagtttt tagagctttt aggtatgaat
     4861 ttagatggat attcttatta ccaaaagcaa aatttaaatg gaaccccttt aacaagaact
     4921 gatggtatta tgctcatagg tatgtttata ggttgtttag tagccgcact tttagctaac
     4981 aaagtcaaat ttcgtctacc tgctagcaat ataagaattt ttcaagcaat agtaggtgga
     5041 attctttcag gatatggagc aagacttgca tttggatgca atttagctaa tttttttaca
     5101 ggtttacctt atttttcttt acacacttgg ctttttactg tttttatggt tttaggaatt
     5161 tatctaggag tgaaaatttg caacacttcc ttttttaaac ctaaagctaa attagaacgt
     5221 gtaaataaag aaaacttgcc gttaaacaag caaagtttgc gtacaaaatt atattttaac
     5281 ttaggcatat tgcttttcat agccttttta gtttgggtgt tttatcttgt ttttacaaat
     5341 ggcaatatca gcacacaaaa caaacaaagt cttctagctt tagcactgat ttttggtttt
     5401 gtttttggct ttgttatttc tagagggcaa atttgtttta cttcttgctt tagagattta
     5461 tttttatttg gtagagataa tgctataaaa ggcgcattaa tcggtatgat tatcgcctct
     5521 ttaatcgctt ttgcttttat cttgcaaggt catactagca aactcataga actttctcct
     5581 gctgtagctg tgggagcatt tttgtttggt tttggtatag tttttgccgg aggttgcgag
     5641 tgtggttgga cttatcgtgc ctttgaagga caaagtcatt ttataatagt aggaattgca
     5701 aatataatag gaactatgat tttagcttta agttatgact ttttaccaaa agcttttaaa
     5761 gaaggtataa aaatcaatct tttaactgaa tttggcaatt taaatggatt ttttatcaac
     5821 cttattttat tcatcttaat gtttgttttt gtagtatttt acaaaaaaca cttttttaaa
     5881 aatcaactta aaggataaac agtgaaaatt acttatagtt taaatttaca aggtgaagct
     5941 tgtccttatc ctgctatagc aacacttgat gtcttaccta agcttaaaag tggagaaatt
     6001 ttggaagtgc tttgcgattg cccacaaagt atcaattcca tacctcaaga tgtaaaaaac
     6061 cgtggtttta aagtgcttga aatcgatcaa agtggaccca cactaagatt tttaatccaa
     6121 aagccttaaa aaaggctttt attctcaaag ctcttttaac atcttttcat aagctgcctt
     6181 agttccagat cttacatttg taaacaaact tgcaataata atcaccaccg aagctactaa
     6241 aaaccctgga actatttcat aaagacctga atttgcaaaa ttcttccaaa gcaccacagt
     6301 agcagctcct gttatcatac ctaagatcgc tcctactctt gtcatcctac tccaaaataa
     6361 agaaaaaagc attacagaac caaaagaagc tccaaatcca gcccatgcat aagaaactat
     6421 actcaaaaca cttgagtttt tatcagtaga aatcaaaaac gctattacag ctaccaataa
     6481 aacacctaat ttacctaaat ttaatacaat atgacttggt gcatcttctc taaaaatctt
     6541 tttataaaaa tcttccgcta tagtagaact tgaaaccagc aattgtgaac ttgccgtact
     6601 cataatagcc gctaaaatag cactgagtaa aatacctgct atccaaggat taaataaaag
     6661 ctgcgacatc acgatgaaaa tcttttcagg atcttgcaaa cttaattcaa atttatgcac
     6721 ataagctata cctaaaatac ctatcataca agcacttaaa agacaaaccg ccatccaagc
     6781 aatacctata aaagtggcca taggaatatc tttagtagaa cgaatcgaca taaaacgcac
     6841 taaaatatgt ggttgaccaa aataacccaa accccaagca agtgcagata taatgcttac
     6901 aattcctact ccttcgccca tagataaagc ttgtggcttt atttctctta ctatattcat
     6961 cgcttcacca aaaccaccta aatgataaag cataaccaaa ggtacaataa ttaaagccat
     7021 catcattaaa agcccttgta tcatatccgt ccaacaaacc gccttatatc cacctaaaaa
     7081 agtataagca acaataataa tcgttccagt agttaaagca taatcgtatc tgataccaaa
     7141 agtactttca aaaagttttg ctccgcttac aagccctgat gaaacataaa aggtaaaaaa
     7201 tatcaaaatt accaccgcac atacgatgcg cagtatatgt ttatcatcat caaaacgagt
     7261 ttcaaaataa tcaggaatag tcaaagaatt tgcaatcaca ctggtataaa ttctaagtct
     7321 ttttgccaca aaaatccaat ttaaactagc tcctatagta agcccaattg caatataaga
     7381 atctataaaa ccacttacat ataaagctcc tggtaaaccc attaaaagcc aaccactcat
     7441 atcagaagcc cctgcgctaa gtgcagatat cacaggcccc atagtacgcc cacctagaaa
     7501 ataatcctct gaatttttat tttgcttata aaaataaaaa cctatataaa gcattaataa
     7561 ggcatacact acaaacatca ctgctattgg ggtattaatt tgaaccactt ccatcaatct
     7621 ctccttgatc attaagatat tgctctaatg cctaaatttc cataacgatg aaaagatata
     7681 cttaaagctt tttcattaaa ataatttaaa agttcaaaac gaccatttaa taatggcttt
     7741 tctcttataa tgattttagc aagctttgca gcctctttat aaatctcatc atttacatct
     7801 ggctttgcta aataacgcac tctttcatat tctttaatac tcttgataaa attttcttta
     7861 ttttctttta aaaacaatac ttttgctcct atgctttgaa caattcgttc tatcatacta
     7921 acatcttgtt catcataact gatacttaga tcaatatttg caatatttgc acctaaaacc
     7981 acacctaaaa catcttttaa gctttcattt ccacaaagtc ttaaaaccat attctttatt
     8041 ttagtataag aaaaaagatt atcttctcca cgaatattga cataatcttt tgaaacacta
     8101 aactcgtttt tataatgata agcataagat tgagacattt taattaaatt gtttataaaa
     8161 tcttgtgctt cttttaaatc tatttgtgct aatttttttg aaaatttatc ttcaattaaa
     8221 tgatcatcaa aatcttcttg cttaatctct aaaaattgag tgatataatt ataaattccc
     8281 acttttctac ccaaacctat agctgatttt ttaatcccac caaaaggttg acgcagcact
     8341 atagcccctg tggttggttt attgatataa atatttcctg cttctatgtg agtgtgaaaa
     8401 tactcccatt ctctttcatc taagctttca aaacctgcag ttaaaccata acctgtggaa
     8461 tttactatat caatagcttc ttttaagtct ttagccttca tcacacttaa aatcggtaca
     8521 aaaagttcat tcatatgagt aaaatcaccc tttttagtgc catattttat gcctggagtc
     8581 atcaaataag gattatcctc taaaaactta ggttttaatg cccattcttc ataaggttgt
     8641 aattcatcta aggccttttg aactttagaa cttggcttat cagctaaagt acctaattta
     8701 tttttaaatt caaaaggatt gcccactgcc atagaactcg cagcatccac taaagtcttt
     8761 ttaaattctt catcatgata aacctcttct tctaagacta gcaaagaagt agctgaacat
     8821 ttttgaccgc tattgctaaa agcagaatga atgatatttt taatcgcact atcacgatca
     8881 gcaaatttag aaactatagt cgcattcttt ccgccagttt cagcacttaa aagcaaggtt
     8941 ggattagctt ttaacatggc ataagcagta tcctctcctc ctgtaagaat tgaaaattta
     9001 atcgcttcat caataagtaa atatttagaa atatcacttc cttttgaagg taagaaaatc
     9061 aaagcatctt ttggaatacc cgaatcccaa aaacacttac aaagcatata acctgttaga
     9121 gttgaaagtg aagaaggttt gtaaatcacc acattacctg cggctagtgg tgcagctata
     9181 gtacctactg aaattcctat aggaaaattc caaggagcta tggtaacccc tataccttta
     9241 ggtgtgaatg taacttttgg attttgtttt ttaagctctt ctaaagagtg cggataaaac
     9301 tctataaaat caatagcctc gcttacttca ggatcgatct ctaaaaaggt tttgcccact
     9361 tctaaagctg ccaaacctat caaatcccct cttctttctc tcatcagttt tgcacttttg
     9421 gctaaaattt gataaatttc atcatgactt ttttgtgtaa atttggaatt tttagctact
     9481 tctaaagctt gtttgatttc tttttctcct gctaaataag cctttcctat aactctatct
     9541 ttgatcttat ctttaacttc taaaacattt aaattttctg ctttaaaatc aagttcgcct
     9601 ataacaggat aaacatcata atcttttaaa ttttcatatt tagttttaat ttctttagcc
     9661 cacgctctat tttgtactaa aataaaatcc gtatcgcttt cattgctaaa ttttttactt
     9721 tcataagaac ttatgatatt tgattcttta tttctatctt gcttacgatg tgtagtatta
     9781 tcaagagttt ttatgccttg taaagatttt aaaaaaagtt ctttttggat attccagttc
     9841 ttatctccta ctttaagatt gaaaaaataa cgcataaaat tatcttcact tgtattttca
     9901 tcaaggcgtc ttacaagata agcaatggca ttgttaaaat gtgcttcatc gcaaactggg
     9961 gcataaagga ttagatcatg cattttagat aattcataag aacattgcaa actcatacct
    10021 tcaagcattt caaaagtaaa agaatccaaa gcacccactt cacttatgcg tgtataagca
    10081 taagcaatct caaagatatt atgacttgca attcctatgt tgatgtattt ataattatct
    10141 ccttcaagaa taaaatcaag cattttatta taattactat cagtatctat ttttttgtaa
    10201 aaagtaggaa gctcccaacc cctttgagac gcaatggttt cttcactttc catattagca
    10261 cccttaacaa aacggatctt aataggcttc atacctttta aaaccctctc ttttgaaaaa
    10321 gcaaaaagtt ttttaagata cttataagaa tcaggaatat aagcttgcaa aacaatccct
    10381 gctttaatat caaatttagc cacactttcc ataaaagctg caacggtgag ctctaaatcc
    10441 ctaaattctt ccatatcaag attgataaat ttagatacac cttgtttttt ctcttcttct
    10501 aaggctaaag cataaagata atctagtctt tttacgacct cttctttaga ataattaaaa
    10561 tctataatat taatttgtga aaaaatagta gtaattttta tggaaatata agtgatatag
    10621 cttgatttta aggcttcttc gtatttttgc atacgatatt tactctcagc ttcacctaaa
    10681 acctcttcgc cgattaaatt cacatttaag gtaattttat cttgctcttt tcttttctta
    10741 atatgtggtt ctaaaacact aggatttgca tctagaacca tagctttagt atcttctctt
    10801 aaatgtttga caaaaaaagg tacacttaaa ttaggagcaa atttgccaaa atttaaaaag
    10861 ctaaaaagta ggaatttttc aaaagtgcta aaaaaatccg ctatgccgta tttactcaaa
    10921 gtatattcta taagctcaaa acttgcattt ttatctttac atctaaaaga acgatctaaa
    10981 agctctataa gcataacttt atttttggga ttattaagaa gtttttgcat tttagcatga
    11041 aattcttttt cagaatttga aatattggct tctatttttc ct
//
LOCUS       DARGED010000044        10954 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.044, whole genome shotgun sequence.
ACCESSION   DARGED010000044 DARGED010000000
VERSION     DARGED010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10954
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.044"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..959
                     /locus_tag="SFZ84_000928"
     CDS             <1..959
                     /locus_tag="SFZ84_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8203050.1"
                     /translation="KEVNANLDSSTKTHEENIKENPKFYETKTESKTSINTNTNTNNT
                     QNLNNSQNIQSNNNQTMQNIFKNQEFIKQNIVKNLAFNVENLDLEQVQDLSKNLSNLS
                     RRLNESLKELEPYTQNAKLNQAELKNLEHKLNLSIKDLVQIKPKTEQDIAESLHHDVK
                     STLLQISNLAKNEGNEAVYNQANRLLAQIEINQLMSLANDSINTYLPFSWDDLNDSKI
                     MFRRGKKDKFFAQIKLEFAKLGDLEILISLNNEKYIDINIMAENIEFRKTIYENAHEL
                     KRNINKAGLLSANFFVGDIIRSKFDTRNMKNLDLEMGMDKKV"
     gene            956..1237
                     /locus_tag="SFZ84_000929"
     CDS             956..1237
                     /locus_tag="SFZ84_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG8203051.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1234..2034)
                     /locus_tag="SFZ84_000930"
     CDS             complement(1234..2034)
                     /locus_tag="SFZ84_000930"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8203052.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(2031..3155)
                     /locus_tag="SFZ84_000931"
     CDS             complement(2031..3155)
                     /locus_tag="SFZ84_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8203053.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            3241..4536
                     /locus_tag="SFZ84_000932"
     CDS             3241..4536
                     /locus_tag="SFZ84_000932"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8203054.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMALRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            4539..4820
                     /locus_tag="SFZ84_000933"
     CDS             4539..4820
                     /locus_tag="SFZ84_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG8203055.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            4817..6442
                     /locus_tag="SFZ84_000934"
     CDS             4817..6442
                     /locus_tag="SFZ84_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8203056.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(6339..6824)
                     /locus_tag="SFZ84_000935"
     CDS             complement(6339..6824)
                     /locus_tag="SFZ84_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203057.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDANLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEETRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            6920..7411
                     /gene="mobB"
                     /locus_tag="SFZ84_000936"
     CDS             6920..7411
                     /gene="mobB"
                     /locus_tag="SFZ84_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG8203058.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            7413..8255
                     /locus_tag="SFZ84_000937"
     CDS             7413..8255
                     /locus_tag="SFZ84_000937"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG8203059.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            8248..8445
                     /locus_tag="SFZ84_000938"
     CDS             8248..8445
                     /locus_tag="SFZ84_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203060.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            8455..10341
                     /gene="metG"
                     /locus_tag="SFZ84_000939"
     CDS             8455..10341
                     /gene="metG"
                     /locus_tag="SFZ84_000939"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG8203061.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHTIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNAELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALIALCANILAKT
                     SLLLSPTLPKSSQKVALALNFEISSANYTKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            10345..>10954
                     /locus_tag="SFZ84_000940"
     CDS             10345..>10954
                     /locus_tag="SFZ84_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203062.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDK
                     KEIAQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFTDFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEK"
BASE COUNT         4183 a         1650 c         1555 g         3566 t
ORIGIN      
        1 aaaaagaagt taatgcaaat ttagattcta gcacaaaaac tcacgaagaa aatatcaaag
       61 aaaatccaaa attttatgaa acaaaaacag aaagcaaaac ttcaatcaat acaaatacta
      121 acacaaacaa cacgcaaaat ttaaataatt ctcaaaatat tcaatctaac aataaccaaa
      181 ctatgcaaaa tatttttaaa aatcaggaat ttataaaaca aaatattgta aaaaatttag
      241 catttaatgt agaaaattta gatctagaac aagtgcaaga tttaagtaaa aatttaagca
      301 atctttctcg tagacttaat gaaagcttaa aagaacttga accctatact caaaatgcca
      361 agcttaatca agcagaactt aaaaatctcg aacacaaact caatctttct atcaaagatc
      421 tagtgcaaat taaaccaaaa acagaacaag atatagctga atctttacat catgatgtaa
      481 aatcaacact tttgcaaatt tcaaatttgg ctaaaaatga aggcaatgaa gctgtataca
      541 atcaagctaa tcgtctttta gcgcaaattg aaatcaatca gcttatgtct ttagctaatg
      601 attctatcaa tacttatctg cctttttctt gggatgattt aaatgattct aaaattatgt
      661 ttagacgcgg aaaaaaggac aaattttttg ctcagattaa actcgaattt gcaaaacttg
      721 gggatttaga aattcttatt tctttaaata atgaaaaata tatagatatt aatattatgg
      781 cagaaaatat tgaatttaga aaaaccatct atgaaaatgc ccatgagctt aaaagaaata
      841 tcaataaagc aggactttta agtgcaaatt tctttgtagg tgatatcata agaagtaaat
      901 ttgatactag aaatatgaaa aatttagatc ttgaaatggg tatggataaa aaagtatgag
      961 caaaatcaaa agatcgatta aaaaagctgt agctctaggc tatcaaaaag aaaaaaactc
     1021 tgcaccaaaa gtgcttgcaa gtggcaaagg cgaaagtgct gctaaaatta tttctttagc
     1081 caaggaacac ggagttccta ttaaagaaga tgaagattta atagaaattt taagcaagct
     1141 tgacttaggt gatgaaattc cacctaatat gtataaagct gtagctgaag tttttgcctt
     1201 tatctatcaa atggcaaata aaactcctaa aaactaatcc gctatttttt ctccaaattt
     1261 aataccctgc cctactttta aattaaaagt taaaagtcct ttttgagaga ttaaaactat
     1321 agtagaacct agctcaaaat ttcctagttc ttcgcctttt ttgaaattta aattttcata
     1381 ttttctagta aaattatgag aaattttagc attggtttgt atgcttgcat caaaattaaa
     1441 acgcattttt cctacatttt gcgctcctac aaaaacaagc caaaaaatac ctttttcatt
     1501 ttgacatttc aagctcactc tttcattttt tacatataaa ttactaatgc gttctaaatg
     1561 tttttcattt acgctataaa gcactccact tgtgtaagtt gcacttaaaa tttgcatatc
     1621 acaagggctg tgataacgat gataatcttt tggagaaaga taaatattga cataatcaag
     1681 cccattttta agctcatctt tttcaaagct atcttttaaa agctcctcaa tgctataagt
     1741 atgtcctttt atagaaaaag caaaatgttc ttcatttgcc aaaaaagtac ttccacactc
     1801 taaaatttta ccatcacttg gactgataaa accttcttca agctttcttg gaatttgcaa
     1861 agttcttgta aaaagagcat ttaaactctc gtattcacaa gggcttttaa attcactcat
     1921 atcgatatta aaatacttaa cataattttc attaataact ttttgtatca ttttaggaaa
     1981 tttaatcccc gctacaaaac caaaaagtct cgaactttct tttgaaaaac tcattttttt
     2041 ccttttaaat ttaaaatcac tatttcactc ggagcaaaaa ctctaagact tggcccccaa
     2101 aatcctgctc cactactcac ataaagctta gttttttctc ctaaatcata aagcccatga
     2161 acaaaacctt gctgaagttt aactaaaaac ataaaaggga aaatttgccc tccatgtgta
     2221 tgcccactta aaacaagatc aaaatcactt aaatcataaa gcaaagctgt tttaggttga
     2281 tgtgtgagta aaatactagc tttacttgta tttaaatcca cttttattct tgctaaatca
     2341 ggagcatata aacccctatc aagtccggct aaatctccaa gtccagcaat atttataaaa
     2401 cccaaatcta aattttgatt gactaaaatt ttcatattag tatgttttct aagcaaatcc
     2461 aaaacttcat tgataccatg ataatactca tgatttccca aagcataaaa agttccgtaa
     2521 gtggagttaa aatcattaag ttttgagatg taatttttta aatctttagg attagtatca
     2581 atcagatccc ctactattac aaccatatca ggactttgca aattcacttt agtgatgagc
     2641 ttgtctaaaa aattttcatg caaattttta cccaaatgta tatcagtaag catgacaatt
     2701 tttaaatctt ttttaagatt tggtatttca acatcaacac tctttacttc aggtgttttt
     2761 agagcattat ttatacttac ataaattaaa aacacactta aaactataag agaaagttca
     2821 aaaatcaaac gcaaaataag attatatgtt ttatctcttt tacccataag agctaaaatc
     2881 aatttaacaa aatcccatgc taaagtcata aaaaacaaac aataagtcgg cgcataaaac
     2941 atggctaaaa tttcatacca agtatcactt aaatattcat ctctacgaaa tattaaaaac
     3001 acagcttgag ctaaaaaaag cacaataaaa ataaaggaaa aaattttata aaaatactta
     3061 aaaagagtaa ttttcttgat taatctttta taaatataaa catttgctaa gccaaaaatt
     3121 aataacacaa tgaaagaaaa aattaaaaat atcataaaag tattataacc aagtaaaatt
     3181 aaatatccgt ataaattttt ctgttataat aagcttttaa ataattttaa aggctataag
     3241 atgtaccgtt ttgcaccttc tcccacaggt gatatgcaca taggaaattt acgcgcagca
     3301 atttttaatt atatctgtgc aagacaaaaa aatatggatt ttatcttacg tattgaagat
     3361 actgataagg ctagaaatat agcaggaaaa gaagaagaaa tcaaagaaat tttaaatctt
     3421 tttagtattt catggcagca ttactatata caaagtgaaa atttaaaatt ccatcgccaa
     3481 atggctttaa aacttgtaag cgaaaaaaaa gcttttgctt gtttttgcac cgaagaagaa
     3541 cttgaagcaa aaaaagagct ggctaaaaaa caaggtaaag cttatcgcta cgatggcact
     3601 tgtgaaaaac tagccgatat tgatgtttta gaatgtgaaa aaccctttgt tatccgtctt
     3661 aaaaaaccta ctcatactat gaaatttact gattttatca aaggcgagct tagttttgag
     3721 cctgaaaaca tagactcttt tgtgattatg agaacggata aaactccaac ttataatttt
     3781 gcttgtgcgg ttgatgatat gcttgaaaat gtcacttgta ttatacgcgg agaagatcat
     3841 gtttcaaaca ctccaaaaca agaacatatc cgcgcaagct taggttataa taaagccatg
     3901 acttatgcac acttgcctat cattttaaac gaagaaggtg ttaaaatgag taaaagagaa
     3961 gcacattctt ctgtaaaatg gctacttgaa agtggaattt tacctagcgc aatcgcaaat
     4021 tatcttgtca tactaggcaa taaaactcct tgtgaaattt ttaccttaga agaggctata
     4081 aaatggtttg atatttctaa agtttcaaaa gctcccgcaa gatttgatct taaaaaactt
     4141 ttgcaaatta atcgcgaaca tatcaaaatg ataaaagatg atgagcttaa taaaatttta
     4201 gatttaaaca aagatcttgc accacttgct aaattttaca ctcaagaagc aagtactata
     4261 aaagaactta aagaaaaaat gcaagctatt tttaacgcaa aaaattttgg cgagtttgaa
     4321 acagaatgta aaattttaaa agaactctta aaagatattg aactttttga aaattatgaa
     4381 gattttaaaa atgaactttt aaacaaaagc aacttaaaag gtaaaaaatt tttcatggct
     4441 ttaaggataa ttttaacagg aaatatccac ggacctgagc ttagcgatct ttatccttat
     4501 attaaaaatt ttattcacga attagcaagg atttaactat ggttatagac tcttttatta
     4561 tttctatttt tcaagtacta caaattgtca ttaacattta tacttggatt attatcatca
     4621 cagcacttct aagctgggta aaccctgatc cttataatcc tatagtgcaa attttatata
     4681 aactaagcta ccctgcttac gccttagtta gaaaaattcc aacacgcatt ggtaatattg
     4741 atcttgcgcc tttgattata gtcttagcat tgcagtttct tggcattttt cttgggaata
     4801 tcttaaggag tatattgtga taaaaaaaat actcgttttt ttatttattt tttcaagttt
     4861 aaatgctaca caatatagta tagaaaaact caaaaaggaa gaaaattcac ttgctaagga
     4921 ttattatatt tataggcttt tagaaaaaaa taaaatcagt aaaaaagatg cacaggattt
     4981 aaattctcat atttttcgct atataggaaa aattaaatct gaacttgaaa aaatcatccc
     5041 tttaaagcct tatatcaacc caaaatatgc taaatgctat acctatacag caaatactat
     5101 cttagatgca aatttaactt gtcaaagtgt gcgcttaaat tcattagttt ttatagcgag
     5161 tctaaattcc aaagaccgaa ctactttagt tcaaaccttt aaaaatcaaa gacctgattt
     5221 gacaaattta ttgctagctt ttaatacttc tgatcctatg agctatatag tacaaaaaga
     5281 agatattaat ggttttttta aactttataa ttattctaaa aaatacgact tagatttaaa
     5341 tacaagttta gtcaataaac taccaaacca cattggtttt aaagattttg cacaaaatat
     5401 tattattaaa aaagaaaatc caaaatttag atattctatg ctagaaataa atcctgaaaa
     5461 tgtaagtgaa gattctgctt tctatttagg agtcaatgcc ttaacttatg ataaaacaga
     5521 gcttgcttat gactttttta aaaaggcggc acaaagtttt aaatcgcaaa gtaataaaga
     5581 caatgctata ttttggatgt ggttgattaa aaacaatgaa gaagatttaa aaactttatc
     5641 gcaaagttct tctttaaata tttatagtct ttacgcaaaa gaacttacca acacaccttt
     5701 tccaaagata gaaagcctta atccaagcaa gaaaaaaaat aattttaata tgcaagatcc
     5761 ttttgcttgg caaaaaataa acaaacaaat tcgcgatgct aacgcaagtc aactagatgt
     5821 cttggcaaaa gaatttgaca cacaagaaac cttgcctatt tatgcttaca tattagaacg
     5881 caaaaataat tttaaaaaac attattttat aatgccttat tatgacaata taaaagacta
     5941 taacaaaaca agacaagctt taattttggc tattgccaga caagaaagtc gttttattcc
     6001 aactgctatt tcagtttctt atgctttagg catgatgcaa tttatgccat ttttggccaa
     6061 tcacataggg gaaaaagaat taaaaattcc aaatttcgat caagatttta tgtttaaacc
     6121 tgaaatagca tattactttg gaaactatca tctaaattac cttgaatcac gtttaaaatc
     6181 tccacttttt gtcgcttatg cttataatgg cggtatagga tttactaacc gtatgcttgc
     6241 aagaaatgat atgtttaaga caggcaaatt tgaacctttc ttgtctatgg agctagttcc
     6301 ttatcaagaa agccgaattt acggaaaaaa agttctagct aattatattg tgtatcgaca
     6361 tcttctgaac gatagtataa agatttcgga tatttttgaa aatttaattc aaaacaaggc
     6421 aaatgatcta aacaaatctt agctacaagc ctagtctctt ccttgacact aggaagagat
     6481 gctttaaaat aatcagtata gttgttttgt attatatatt ttaaatactc atcatccaat
     6541 ttttcaatat tggctttttt attattgata aaaacttcta aattttgaat ttttaatgta
     6601 tttggagtaa aagacaaggc caatacatca tctttacttg tcttgtctag aattgggttt
     6661 aaataagaca tagttataat ggcattaatc ttatcttgtg tgattttgta tttttgagta
     6721 aacattaaag tttgagattt taaatttgca tccacaatcg cctgatcttt taaagaacaa
     6781 gctccaagca aaaaagcacc taaaattaca ctataaattt tcattctttt tccatatttt
     6841 ttagtattat tgtagccttt taaccctatt ttttggttta aaaagatata attttgcaaa
     6901 aaaattaaga gtatatttta tgaaacaact tattatagct tttagcgggc cttcaaattc
     6961 aggaaaaact acactcataa ccaaaatagc tgataatttt ttgcaacaaa atttaaaagt
     7021 tttaatcatt aaacatgatc ctgccgataa agctcaattt gattttaacg gtaaagatag
     7081 ttttaaattt tttcaaagtg gagctgaagt catggtttta agccctacaa gaacaacttt
     7141 tttttctcat gaaaatagag atattttaaa agctttaaaa ttaagccctg attttgacat
     7201 ttgtttggtt gaaggattaa aaactcttga tttaccacgc attagcgtat tttgcaaaga
     7261 aattgatgaa agttatttta ttttttcaaa cgccattgca agctatgaaa aaatttctca
     7321 cccttatctt acttggcttg atttaaacga tatacaagct atttgccaat acatacttaa
     7381 aaatgctaaa aatttacaag gagaattata aaatgcaaga agtgatttct tatatacaaa
     7441 aagcggtttt agaaatttct aacgctttaa aatttcccga tacaagctac agtcaaaatc
     7501 aaaattttac aggcgatacc caactcaagt ttgatgtttt aagtgatgaa atcatcacaa
     7561 aaaccctaag tcaatgttca agtattaaag ccatcatcag tgaagaaaaa gatgaaattt
     7621 taacgcttaa cgagagggca aattttatcg tagcttatga tcctttagac ggttctagct
     7681 taatggatgt taattttgcc ataggttcta tttttgctat ctatgaagaa aaagcaagtg
     7741 ctaaaaattt aagagctgcg ctttatagta tgtatggagc gcgattagaa cttgtgattt
     7801 gcaaagatca gccaaaactt tatcgcttaa atgcaaataa tgaatttatt tttataaaag
     7861 atcttaaaat gaatgaaaaa ggcaagatta atgctacagg cggaacgcaa aaattttggg
     7921 aagaaaaaca cgctaaattt atcaaaagtc tttttgatga aggctatcgc ttaagatatt
     7981 ctggagccat ggtaagcgat atcaatcaaa ttttattaaa agggggtggc atttttagct
     8041 atcctgcaac acaagatgcg cctaatggca aacttcgtgc cttttttgaa gtctttcctc
     8101 tagcctttat catagaaaaa gcaggcggaa aaactacaaa tggaaaaaac cgctctttac
     8161 ttgaacttga atttgataaa atccatgcga caactccttg tttttttggc tcagaatatg
     8221 aaatttcaaa acttttaaag gcttacaatg aatgaagtta gagatgaatt tgagcaagat
     8281 atggataaaa aaaaagaaat tttactttca tgtcaaaact caaaaaacct aaactcttgt
     8341 tataattgcg atgaaatttt taactgccaa actagaaaaa attatgttga tgcagtctat
     8401 aacagtatgt ctaagggtaa aaccgaaggc ggatttgact tttaaaggaa aaaaatgcgt
     8461 tatattacaa caccaattta ttatgtaaat gatgtacctc atttaggtca tgcttatact
     8521 accatcatag ccgatacttt agcaagattt tatcgtttgc aaggacatga aacaagattt
     8581 ctaacaggaa cagatgagca tggacaaaaa atcgaagaag ctgccaaact aagaaattcc
     8641 actcctcaag aatacgctga taaaatcagt tttgaattta aaaaattatg ggatgaattt
     8701 gaaatcacct atgatattta cgcaagaaca actgatacaa ggcatattga atttgttaaa
     8761 gctatgtttt taaaaatgtg gcaaaaaggt gatatttata aagatgaata cgaaggacac
     8821 tattgtattt cttgtgaaag cttttttact caaagtcagc ttattaacga ttgttcttgc
     8881 ccagattgtg gcaaacaaac tagaatttta aaagaagaaa gctatttttt caaactttca
     8941 aaatatcaag ataaaatttt acaatggtat gaagaaaaag atcccatctt gccaaaaaac
     9001 aaaaaaaacg aacttataaa ttttgtccaa aacggcctta aagatctttc cattacaaga
     9061 acaagttttg attgggggat taaactgcct caagaaatta atgatgataa acatattatt
     9121 tatgtatggc ttgatgcact ttttatctat gtaagctcac ttgactttca aaacaaggga
     9181 gaaaatgcta aattttggcc tgcgcatgtg catttagtag gaaaagatat cttgcgtttt
     9241 cataccattt attggccagc ttttttaatg agcgtggatt tgcctttgcc aaaatttata
     9301 ggtgcacatg gctggtggac taaagaaggt gaaaaaatga gcaaatctaa aggcaatgtt
     9361 gtaaaaccta aagaagtagt tgatgcctat ggaagtgaag cttttagata tttcttgctt
     9421 agagaagtgc cttttggtaa cgatggggat tttagcgaaa atatgctgat aaatcgtatc
     9481 aatgcagagc ttagcaatga atttggaaat ttacttaatc gcattatagg tatgagtaca
     9541 aaatattctc aaggaaatat ttcaaaagaa ggtgttttaa aattttacaa tgccgaacta
     9601 aatcaagcaa aagaacactt aaatttagcg gtagaatttt tagaaaactt acagtgtaat
     9661 cgttatttag aagaactttt taaagcctta agtgtggcaa atttagccat tagtaaatac
     9721 gaaccttgga atttaatcaa agaaaacaaa cacgaacaag ctaatgcttt aattgcactt
     9781 tgtgcaaata ttttagccaa aacaagcctt ttattaagcc ctactctacc aaagtcctct
     9841 caaaaggtgg ccttagcttt aaattttgaa atttcgtctg caaattacac aaaaatgata
     9901 cttgataatg aacttttaga ttttaaagca aatccttgcg aagctttatt tccaaaagta
     9961 gaaaaagctc ttttaaaaca agaaattaaa gaagaaccta aaaaagaaga aagtcctaaa
    10021 ataaaaatcg atgattttgc aaaaattgaa atcaaagttg ctaaggtact tgattgtcaa
    10081 aatatagaag ggagtgaaaa acttttaaaa tttcaactcg aacttgacga taaagaaatc
    10141 cgtcaagtac tctcaggcat agcaaaatac tataaggcca gtgatttaat cggtaaacaa
    10201 gtttgcgtta taagcaatct taaaaaagct aaaatttttg gacatgaaag cgatggtatg
    10261 atactttctg caaaaagcgg agataaactt gttttaatca cccctgaaca acttgtgcaa
    10321 aacggctctt tagtgggtta aaatatgcaa attagcaatt taggcgaact gttaaacgca
    10381 acactaattc atgaaggtag tgttttaagc gtggaaggtt ttgccataaa tttaaacgaa
    10441 cttaaaacag gctttgcctt ctttaataac gataaaaaag aaattgccca agctgtaaaa
    10501 aaaggcgctt atgctataat tacagaaaat gacattacta ttgaagataa agacattttt
    10561 tactttagag tagaaaatct agaacaagct cttgtaagat ttttacgctt tttttgcgaa
    10621 gataaagaat gtgaattttt actttttaaa tcttacgaac taagtctttg caaggctttt
    10681 tattttaaca ttttaaaagg aaatattttt actgattttg aaaaactaat caaagcaaaa
    10741 aagggtgaaa ttttttgcta ctgtgaagaa aattacttaa ataaactttg cgcctattct
    10801 catagtctaa aagatgctaa ttttacctta ttatcgcgat ctagcttctt ttttacaact
    10861 ttgatttgtg aaaatttata ttttaaaaat cttaatttgc ctttttttta cgcaaatagt
    10921 tttgcaaaaa ttatttcttt tttaaaagaa aaaa
//
LOCUS       DARGED010000045        10795 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.045, whole genome shotgun sequence.
ACCESSION   DARGED010000045 DARGED010000000
VERSION     DARGED010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10795
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.045"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            21..1820
                     /locus_tag="SFZ84_000941"
     CDS             21..1820
                     /locus_tag="SFZ84_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG8203063.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            1833..3407
                     /gene="pckA"
                     /locus_tag="SFZ84_000942"
     CDS             1833..3407
                     /gene="pckA"
                     /locus_tag="SFZ84_000942"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG8203064.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3417..4799
                     /gene="argH"
                     /locus_tag="SFZ84_000943"
     CDS             3417..4799
                     /gene="argH"
                     /locus_tag="SFZ84_000943"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG8203065.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDIQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPIFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4821..5924)
                     /gene="ychF"
                     /locus_tag="SFZ84_000944"
     CDS             complement(4821..5924)
                     /gene="ychF"
                     /locus_tag="SFZ84_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG8203066.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGVK
                     ESLKLANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGTKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(5921..7372)
                     /locus_tag="SFZ84_000945"
     CDS             complement(5921..7372)
                     /locus_tag="SFZ84_000945"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG8203067.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7369..7965)
                     /locus_tag="SFZ84_000946"
     CDS             complement(7369..7965)
                     /locus_tag="SFZ84_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8203068.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(7984..8532)
                     /gene="apt"
                     /locus_tag="SFZ84_000947"
     CDS             complement(7984..8532)
                     /gene="apt"
                     /locus_tag="SFZ84_000947"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG8203069.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8529..8861)
                     /locus_tag="SFZ84_000948"
     CDS             complement(8529..8861)
                     /locus_tag="SFZ84_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203070.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8861..9298)
                     /gene="rpiB"
                     /locus_tag="SFZ84_000949"
     CDS             complement(8861..9298)
                     /gene="rpiB"
                     /locus_tag="SFZ84_000949"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG8203071.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9465..10019
                     /locus_tag="SFZ84_000950"
     CDS             9465..10019
                     /locus_tag="SFZ84_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG8203072.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10035..>10795
                     /locus_tag="SFZ84_000951"
     CDS             10035..>10795
                     /locus_tag="SFZ84_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HEG8203073.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSP"
BASE COUNT         3688 a         1562 c         1826 g         3719 t
ORIGIN      
        1 tattttttta aggaaaaata atggctaaaa aattcatcga tgtaatggat acaagcttta
       61 gggacggttt tcagtctgtt tatggagcta gggttttaat ggatgatttt tttcctgcag
      121 tagaagcagc aaaagaagcg ggtattactc attttgaatt tggtggtggt gctagatttc
      181 aaagcttgta tttttatctt aatgaagatg cttttaccat gatggataga tttagggcta
      241 ttgtaggaaa agatgctaat cttcaaactt tagcaagagg agtcaatacc gttactttag
      301 atactggaaa tagtgaactt attgatttgc atgcaaaact ttttgcaaaa cacggtacta
      361 caacgataag aaattttgat gcccttaatg atgtaaataa tttaaaattt agtggtgaat
      421 gtatagtaaa acatgggtta aagcatgaaa ttactattac tttaatggat ttaccgtcaa
      481 attgcaaagg tgctcatgat gtgccttttt atgaaaaaat tttaaaagaa attttaacag
      541 cagaaattcc ttttcatagt atttgtttca aagatgcaag tggaacttct aatccaaata
      601 aaatttataa aaccattaaa atggctagaa aaattttacc tcaagataca catattagac
      661 ttcatacgca tgaaaccgca ggggtgagta tagcttgcta tcttgcagcg cttgaagcag
      721 gggttgatgg tattgatttg gctgcagctc ctgtaagtgg tggaacttct cagcctgata
      781 ttttaaccat gatgcatgct ttaaaaggca aagattatga tttaggtgga cttgaagaag
      841 aaaaaatttt aagatacgaa gaagttttaa aagattgttt aaaagagtat tttttaccac
      901 ctgaagctac tatggtaaat ccacttattc ctttttctcc tatgccagga ggagctttaa
      961 cagcaaatac acaaatgatg agggataata atattttaga taaatttcca caggtcattc
     1021 atgctatgag agaagttgtg gaaaaaggtg gatttggtac ttcggttact ccagtttctc
     1081 aattttattt tcaacaagca tttaataatg ttatgtttgg gccttggaaa aaaatcgcag
     1141 aaggttatgg aaaaatggtg cttggttatt ttggaaaaac tccagttaca cccgatgcaa
     1201 acattgttga acttgcttca aaacaactta atttagaacc cactacagaa cttgctatta
     1261 atatagccga taaagatgag agtaaaagca tagcttatac taaaaccttg cttgaaaaag
     1321 agggtataga aacgagtgaa gaaaatatat ttattgcagc agcttgtaaa gaaaaaggta
     1381 tagcattttt aaaaggagag gcaaaggtaa atatacgcaa attagctagt atgccaaagc
     1441 ctatgagtgt agatgaaaac aaatttactg tagctgtaaa tggtaataaa tatcatgtgg
     1501 aagtgagtta tggttttgat aaagatgtta atgttaagag tgtaaaaaaa gtagaagaaa
     1561 ataaaaatat tatttcttca aattcaacaa gttctgtcga tgctgaaaat gaaattttag
     1621 caggtatttc aggtaatgtc tttaaaattt atgttaacga aggcgaagaa gtaaaatcag
     1681 gtcaagctat catggtttta gaagcaatga agatggagat tgaggttaat gccccaaaag
     1741 atggaattat ttcagagctt tgtattaaaa taggtgatac tgttaatgaa ggcgaagtat
     1801 tagctattta caagaattaa agtgagggaa aaatgaaaaa atttgataag ttaggtttgg
     1861 ataatataaa ggaaattttt cataatttaa gttatgatga attaaatgct catgaaaaag
     1921 caaataatga aggtttaagc acggataatg atactttttg tgtagataca gggattttta
     1981 caggtagaag tcctaaagat aaatattttg taaaacaaga tccatctagt aaatatatag
     2041 cttggggaaa ggtaaatcag cctattacaa aagaattatt tgataaactt ttaactaaag
     2101 caaagcaaga attaagcgga aagaaaattt atgttcaaga tgttttttgc ggtgcttctt
     2161 tgcaaagtcg caaagcagta agatttgtta ctgaaattgc atggcaagcg cattttgtta
     2221 aaaatatgtt tattcgccca agtcaagagg aacttgagaa ttttaaagca gattttattg
     2281 tttataatgc ttgcaaatgc atcaatgaag attacaaaca agatggttta aattcagagg
     2341 tttttgtgat ctttaatgtt gaagaaaata tagcggttat tggtggaact tggtatggtg
     2401 gagaaatgaa aaaaggtatt ttttctatga tgaattattg gttgccacta gaaaataaac
     2461 tttctatgca ttgtagtgca aatgtcggag aaaaagacga tgtggcactt ttctttggac
     2521 ttagcggtac aggaaaaact acgctttcaa ccgatccaaa aagaagactc ataggcgatg
     2581 atgagcatgg ctgggatgat gaaggtgtgt ttaattttga gggcggttgc tatgcaaaaa
     2641 caatcaatct tgatcctgaa catgagcctg aaatttatgg agccattaaa agaaatgcac
     2701 ttttagaaaa tgtagtttta agagctgata agagtgttga ttatgctgat gcctcaaaaa
     2761 cagaaaacac gagagtttct tatcctatag agcatattga aaatcatgag cctagtctaa
     2821 aagcagggca tccaaaaaat attatatttt taagtgcaga tgcttttgga attttacccc
     2881 cggtgagcaa actaagcaaa gagcaggcta tgtattattt tttaagtggc tatacagcaa
     2941 aagtagctgg aactgagcgc ggtataacag agcctcaagc aactttttca gcttgttttg
     3001 gagaaccttt tatgccttta catccaacgg tttatgcgag attacttggt gaaaagattg
     3061 aaaaacatga agttaatgtt tatcttgtta atacgggttg gagtggcgga agctacggtg
     3121 tgggtaaaag aatgagcatt aaggctacta gggcttgcat taatgctatt ctagatggaa
     3181 gtattacaaa atgcgaattt gaaaattttg aagtgtttga tttagctatt ccaaaagctt
     3241 tagaaggtgt agaaagtgta cttttaaatc ctataaatac ttggttagat aaaaatgctt
     3301 atattgcaac aagagataaa ttagcacata tgtttataca aaattttaaa cgttatgaag
     3361 atgtcaaaga aggcattgaa tttagcaaat ttggaccaaa aatttaaggc atttaaatga
     3421 aaaatgaaat gtggtcagga cgttttagtg atgcaagtga tgagctttta aaagaattta
     3481 atgcaagttt aaatgtagat aaaactttgt tcaatgaaga tatacaaggt tctatagcac
     3541 acgctacaat gcttgaaagt tgtggtattt taaaaaaaga agaattagat gctattataa
     3601 aaggtttaga gcaggttaga agtgaaatag agcaaggtaa atttattttt gatattaaag
     3661 atgaagatat tcatatggcc gtagaaaagc gtttaagcga gattataggt agtgaaattg
     3721 gtggaagact tcatactgca agaagtagaa atgatcaagt ggctactgat tttaaacttt
     3781 ttgtcaaaaa atctcatatt gaacttataa agcttttaaa agaattgatt caaaccatgc
     3841 tcgaacatgc taaagtgcat aaaaaaacta ttatgccaag ttttacacat ttacagcacg
     3901 ctcagcctgt gagtttttct ttttatattt tagcttatgc ttttatgtta atgcgagata
     3961 ttaagcgttt gcaaaatagc ctagaactcg cagacttttc gccacttgga tcttgtgcat
     4021 gtgcaggaac aagctataga accaatcgtg agttgagtgc tgaaatttta ggatttaaag
     4081 atattatgct aaatgctatg gatggagtga gtgataggga ttttgctctt gatttgcttt
     4141 atgatatagc agttattttt acacacacat caagactttg cgaggaaatg attttatttt
     4201 caagttcgga gttttctttt ataactataa gtgatagctt ttcaacagga agttctatta
     4261 tgcctcagaa aaaaaatcct gatgtttgtg agcttatacg tggaaaaaca gggcgtgttt
     4321 atggaaattt gatttctctt ttaactataa tgaaagcttt acctttagcc tataataaag
     4381 atatacaaga agataaagaa gggatttttg atagtgtaaa aaccgctaaa gatagcttaa
     4441 tcatcttaaa tgcaatgcta aaagaaatac aaattaataa agaaaatatg cttaatgctt
     4501 gtaaaaaagg tcatttattg gccaccgatt tggcagatta tttggtgcgt gaaaaaaata
     4561 ttccttttag aaaagcacat tttatagtgg gaaatgttgt tgcacaagct gaagcacaag
     4621 gtattgatat aagtgaaatt aaagatcttt caaaaataga tcctatattt gatgaaaaag
     4681 ctatggaact tttaaatttt gaattttctt taaattctaa gcaaagtgaa ggctcaagtt
     4741 ctattgcaag cgtagaaaag caaattcaaa ttttggaagg ctttattcaa aatttataaa
     4801 tattgtttag gctattttgc ctaaacattg aatctaaaat gcattacatc gccatctaaa
     4861 acgatatagt cttttccttc aaggcgtagc tttcctgctt ctttggtgcc attttcgcct
     4921 ttgtattgga tatagtcttc ataggaaata acttcagctt ttatgaagcc tttttcaaag
     4981 tcattatgaa tcacgcttgc tgcttttggt gctttccagc cttttttgat tgtccaagaa
     5041 cgcacttcaa ctacaccagc ggtaaaataa ctgatcagtc caagcttagc aaaagcagtg
     5101 cgtatgattt gatcaagacc gctttcgtta actcctagag aacttaaaaa ttcatgactt
     5161 tcttcatcgc ttaatcctac taattcttct tcgatttttg cacaaagctt gataacttca
     5221 tgatcatttt ttttagcata ttcttttaaa gcttttacat aatcattatc ttcactaata
     5281 ccattttcat caacatttgc accataaatc acctctttag cagaaagcag tcttaattcc
     5341 ttgattaggg cttgataaat ttcactttcc ttttcaggat aagaacttgc agctaagcct
     5401 ttgtttaaat gatcaagtaa ggaatttgca agtttgagac tttctttgac acccttttga
     5461 ttggctttgg cttctttggt gagtttttct atttttttac tcagttgctc aatatctgct
     5521 aaaataagct ctgtattgat aatttctaca tcacgtaaag gatcaactcc accttcaaca
     5581 tgggtaatat tttcttcatc aaaacaacgt actatatgca aaataacctc agtttcacgt
     5641 atatttgaaa gaaatttatt tcccaagcct tcgcctttac ttgcgccttt aacaagtcca
     5701 gcgatatcta caaattctat taaagaatgc ataattcttt caggttttac tattttagca
     5761 agttcattca gtcttaaatc aggaacttca accatggctt tattaggctc tatggtgcag
     5821 aaaggatagt ttgcactttg ggcattttgt gctttagtta aagcattaaa agttgttgat
     5881 ttgccaacat ttggaagtcc tactatacct acgcttaaac tcatttagct ttccttaaaa
     5941 tttgaattaa ataattaaca cacatcctaa ctccagctcc acctgcgcca aaactagaat
     6001 atccccaaga tttttctgta taagcaggtc ctgctatgtc aagatgtagc catttatctt
     6061 tatattcttt acgaataaat ttatctaaaa ataaccctgc ggtaattgca cctccgtagc
     6121 gactagaggc agtattacta acatcggcaa tatttgattt tataagttct cttaagtgag
     6181 ggttgaaatg taagattgtg gtatattctc cgcttttttt agagcttaga taaaaatcat
     6241 tttgcaattc ctcattattt cccataatag cgcttgtaaa ttctccaagt cctacaacac
     6301 aagctccagt aagagttgcc atatcgataa gtaaatcagg ttttaaatcc tgtgcaaaag
     6361 aaagacaatc agctaaaacc aagcgtcctt ctgcatctgt atttcttacc tctatgctta
     6421 caccttcacg actgattaac acatcatcag gcttataagc attgccgcct atcatatttt
     6481 cagttgcgcc caaaatgcaa tgcacttcta aatctaaagc aagttcagct acggctttta
     6541 tgattcccat tactgctgct gcaccgcttt tatcagcttt cattgtaagc ataaaatcag
     6601 ctggttttaa gcttaatcca ccgctatcgt aagttaagcc ttttccaaca aatacaacac
     6661 gtttttttgc atttttggct ttatagctta gatgaatgag gcgtggtggg tgtatcgagg
     6721 cgcgatttac cgctaaaaag gcattcattt tttctttggc taagaatttt tcatcataaa
     6781 ttttacaaat aatgttttta ttttctttag ctaaattttg cgcatcttct gccattttta
     6841 aaggggtgta aatttcagga atttcattga ctatattttt agtaaaattt gtagcattag
     6901 ctaaaatttc tccacgctct aaacctatct tagcttcatc tttattaaat ttcttaccat
     6961 ttaattcttc gcttgaaata ataaattttt ccaaagtact tgtttttttc tcgcttttat
     7021 atttgtcaaa tttataagcc ccaaaaagta cgccttcaac taaagatgca aaacttctaa
     7081 ctacacaatc tcctattatg ctaggaagtt ttacgctttt aatattaagt ttctcaagag
     7141 ttttatatgc tgtgcaaaga cttaatctta tatcctcata agcaagactt ttaagctcta
     7201 aataaagctt tttattgttt aagtctaata atgcaccttc gcctttgtaa ttattaagtt
     7261 taaaaaaatc tttttctttg ttaaaaattt ttaaattttt atcctgtata aaaacaagtt
     7321 caaagtctgc ttttatagca tctagttttt tatcgtttaa ttcaaatttc atgatttttt
     7381 ccttttatct ttaagtatag ctttttccat ttgtttaaaa ccaaataata aaagggataa
     7441 aaaagctata ataataatgg ctgcataata ccaatgttct tcagcccaag tcaccatctt
     7501 ccaaatttgt tctccaaaat accaagctaa aagtatagtg attgatgccc aaacccaagc
     7561 actaaaaaga ttgataatag caaatttttt tgcactataa cgcgtgattc ctatactcat
     7621 aggtataatg gttctaaagc catacatata gcgttgtata aaaataatag gccaaccaaa
     7681 acgttgtaaa agtaggtgtg ctactgcaaa tttacgcctt tgagttttta attttttttg
     7741 tatgtagcgt ttattatatc ttcctatata gaaataaatt tgatcaccta caaaaccacc
     7801 aagtcctgct ataaatataa caaaacctaa atttacatgt ccttgatgag caaaaatacc
     7861 tgctaaaatt aaagctaact ctccttctaa aatgcaccat aaaaaaataa taatataagc
     7921 tagatctttg tattggtaaa gtaaattttt taaaaattct tccatttgta cctttctata
     7981 gttttaaatt tctaaaacac tataaactga agtaagtttt tcaagtttat ttgctccatt
     8041 taaatcttta agattcatta aaaaacaagc ttcaacacat ttagctccag ctttttgaat
     8101 gagttcatat gaagctatag ctgttccgcc agttgctatt aaatcatcta caagtaaaac
     8161 tcttgcattt tgaatatttt taaatgcatc tttatgaagt tctactttat cgctgccata
     8221 ttcaagatcg tattcgcagc taaaggtttc aaaagggagt tttccaggtt ttctaatagg
     8281 cacaaaagga agattaagtt ttgcacaaat catagatgca aagataaatc ctctgctttc
     8341 tgttcctgct atgaagtcta gattgtaatc tttgtagcgt tcttttaaat gtctaagtag
     8401 aaaatttaaa gcttctttgt tatttagtag agtggtgata tctctaaaaa taattccttt
     8461 ttttggaaaa tcaggaataa tcctaatgct atcaagcaga tatttttttt cttcttgtgt
     8521 tagttttatc ataataatgc ctcgattttt gcttctaatt ctttaattct ttgtcttagt
     8581 ttgtcatttt ccaagcgata ttgagaattt ctggttctta aagatgtaag gtctgctttg
     8641 attttattaa gctcttctgt gagtatatct atatttccaa ggcttctttg aagttgaatt
     8701 tgtagttttc taatgacaat ctcagtatca tcaagattgt ttttgataaa atcttttgat
     8761 gttttttctt tattaagtag agttttatag taaaacaaca ttacaataag atagatagtt
     8821 gcacaaatca atatagttaa aacaagccag tttgtaaaca ttatattttt acctcaattt
     8881 tttgaattct ttgcatatgt ctcccttctt caaaaggagt ttgaatgaat ttttctataa
     8941 tatctatagc taattcaacc ccaattaatc ttccgcctaa tgccaaaaca ttggcatcat
     9001 tatgccttct tgcaagttct gcacttaagc tttcgtggca taatgcacaa cgaatgtttt
     9061 tatgacgatt tgctgcaata gaaattccaa ttccacttcc acaaataaga atgccaaagc
     9121 tccgtttgtt tattttttcg gcaagtaaat gcgcataatc aggataatcg cagcttgcgc
     9181 aagtgtttgt tcctaaatcg ttaaaaatta tatttttttc ttttaaaaat acgcaaattt
     9241 tttcttttaa ttcaaaacca gcatgatcac tagcaatata aattttttcc ctaagcattg
     9301 gtttcctaaa ttactatata aaataagata aaaacctaat cttatcatat taaatcataa
     9361 aaacagcttt tctttgtttt aaaaataagc tttatttttc tttatatatg ttagaatcat
     9421 gtgacaagaa aaataaaatt tcaataaatt aagaggagaa gaaagtgaag ctcatactca
     9481 taggatcttc aacaggtggt cctaatcagc ttaaatttct tttaaaggat attgatgtaa
     9541 aaaatacttg tgtagttata gctcagcaca tgagtgccag ttttattcca tcttttgtgg
     9601 ggcaatttaa taaagaagct tttagtgaag tgtgcttatt gaacgataaa gagatattaa
     9661 gcaataaaat ttatatttgc cctaaaaata ctattttatc tggaaattta aatattgtag
     9721 ccgcttggca agatgtggct tcaagcttta aaccgagtgt ggatttactt tttcattccg
     9781 ctgtttcttt ggcaaaaaca aataaaatac ttgctattat tttaacgggc atgggagatg
     9841 atggcgcaaa aggtttattt gagctttata aaacaggagt tagatgttta tgtgagaatg
     9901 aagcagatag cgtcgtttat ggtatgccaa aaagagcaaa agatatgaat ccgcatttaa
     9961 aacctatgag cttaaaagaa attaaaaaag aaattgtaaa ttttattgat caggattaat
    10021 aaaaggaaaa ttgcatggaa aaaaaaataa ctcctagcga attggaactt aatgaattta
    10081 taaaaattat caacgaaatg agtggtattg atttaaccga taaaaaaaat atactagctt
    10141 taaagttgaa taaatttctt gaaggaacta atactaaaaa tttttccgaa tttttgggaa
    10201 aattaaaaag caatagacaa cttaaacaag aaactttaga ttttgtaacc ataggtgaaa
    10261 cttatttttt aagagaattg gctcaattga aagaaataat ttattatgcc aaaagcttag
    10321 aaaagagagt aaatatccta agcgcccctt gttcaagtgg agaagaagta tattctttgg
    10381 cattattggc tgcacagaat tttattaaag atatgtatat tttaggcgtt gatattaatt
    10441 caagtgtgat tgaaaaagca aaacttggaa aatatcaagg aagaacttta cagcgattga
    10501 gcgagagtga aaaaagaagg ttttttttag aaagcgaaga taaattttat actattaata
    10561 aaaatgagct ttgtacttgt aaatttgaac tttgcaatgt ttttgaagaa aaattttcaa
    10621 gattgggaaa atttgatatt atagcttcta gaaatatgat tatttatttt gatcatgaat
    10681 caaaactaaa acttatggag agatttcata gaattttaaa tgataaagga aggctttatg
    10741 ttggcaatgc tgatttaatt ccagagacta tttattttaa aaagattttc tctcc
//
LOCUS       DARGED010000046        10744 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.046, whole genome shotgun sequence.
ACCESSION   DARGED010000046 DARGED010000000
VERSION     DARGED010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10744
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.046"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(52..1074)
                     /gene="selD"
                     /locus_tag="SFZ84_000952"
     CDS             complement(52..1074)
                     /gene="selD"
                     /locus_tag="SFZ84_000952"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(1024..1026),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG8203074.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1084..1656)
                     /gene="yedF"
                     /locus_tag="SFZ84_000953"
     CDS             complement(1084..1656)
                     /gene="yedF"
                     /locus_tag="SFZ84_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8203075.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSKVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1767..3869)
                     /gene="ccaA"
                     /locus_tag="SFZ84_000954"
     CDS             complement(1767..3869)
                     /gene="ccaA"
                     /locus_tag="SFZ84_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG8203076.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSKELKNSMQKLADGSNAQASSLEQSAVAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
     gene            complement(3960..4718)
                     /locus_tag="SFZ84_000955"
     CDS             complement(3960..4718)
                     /locus_tag="SFZ84_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG8203077.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKNKSSIKKY"
     gene            complement(4711..5493)
                     /gene="fdhD"
                     /locus_tag="SFZ84_000956"
     CDS             complement(4711..5493)
                     /gene="fdhD"
                     /locus_tag="SFZ84_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG8203078.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            complement(5660..6592)
                     /locus_tag="SFZ84_000957"
     CDS             complement(5660..6592)
                     /locus_tag="SFZ84_000957"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG8203079.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(6589..7230)
                     /locus_tag="SFZ84_000958"
     CDS             complement(6589..7230)
                     /locus_tag="SFZ84_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8203080.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(7227..10031)
                     /locus_tag="SFZ84_000959"
     CDS             complement(7227..10031)
                     /locus_tag="SFZ84_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(9489..9491),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG8203081.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(10031..10222)
                     /locus_tag="SFZ84_000960"
     CDS             complement(10031..10222)
                     /locus_tag="SFZ84_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG8203082.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            complement(10197..>10744)
                     /locus_tag="SFZ84_000961"
     CDS             complement(10197..>10744)
                     /locus_tag="SFZ84_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8203083.1"
                     /translation="FDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFE
                     NSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVI
                     NKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRS
                     EFLRREANKQRRTREKSQGIS"
BASE COUNT         3481 a         2090 c         1329 g         3844 t
ORIGIN      
        1 tgtataaaaa atgataaaaa aaaattttaa tgggtatata agtaacaaaa attaagaaat
       61 gataatatca ttttcttgct tatttacaac cttagcaata attttagctt gaatattttc
      121 atcttctagt ttttttaaac attctaagga atctttttca cttatagaaa ttaaaagtcc
      181 tcctgaagtt tgtggatcac aaagtaataa tttttcttca tttaaatcag gggtaagttc
      241 ttttataaat tctaaatttt tataagctcc agcaggaatt aaacccatat taaaatactc
      301 ttttactcca tctaaaaaag gaagttcact ttcaaaaatt tcaaaagaaa tatttttatt
      361 tagcatttct tttaaatgtc ctaaaagtcc aaaacctgta acatcactca tggcacttgg
      421 atgaaattta agagcaattt gactggcttt ataatttaac tccatcatgt ttttaagcat
      481 tatatctaaa tgtttttgat ttaacatttg cgcctttaaa gctgtactta aaattcctgt
      541 tcctaaaggc ttggttaaaa tgatacaatc tccgatttta gaagtattat tagcaataaa
      601 tttactagga tgtacttttc ctgtaacact aagtccaaaa aaaagctcgg tgctttctat
      661 agtatggcca cccacgacta aagcattaca ttctttaact ttatcatttg caccttctaa
      721 aagctctttt aagatgttta aatcatgatt gcaagtatca aaacctacta tatttaaggc
      781 attaattacc tctgcaccca tagcaaaaac atcgcttaaa gcatttgctg cagcaatagc
      841 accaaaatga taagcactat ctactatagg agtgataaaa tcaagcgttt gcaccaaagc
      901 taaatcggga ctgatttgat atacgcttgc atcttcatta tttccgatat cactaagtaa
      961 agcaggagtt ttttgcatga aatttaaaat tgttttaaga ccacccgggc ttaatttcgc
     1021 tgctcagcct gctgctttaa caaaatgcgt taaattttga tttttatatt gcagtgtttt
     1081 tccttataga gtaatgattt ttgctttacc aaaaagctcg tttaaaattt cataagcatt
     1141 gcctatattt cctattttaa gttctttgct tttattaaaa aattctagac aagctccaca
     1201 acttatgatc tcaataccta aattttcaag ttctttcata gctaaatgtg ctttatgatt
     1261 ttcatcaaca ttgattaaaa cactttcatt tacgcaaaga attttacttg gagcatgatc
     1321 taaatttttt aaggtactta aaaatcctac aagtaaattt tgtcccaatt caccctcacc
     1381 cactttgtcg gtttttaaaa ataaaacatt ataatcgtga atatttactt tactagaatc
     1441 aaaattcttt ttttgtactt tgatgcaaaa ctcttgtgca ttttcatcta caacagggtt
     1501 taaatttaaa gagttaagaa attttacaac attatttttt gaaataatag aatttaaaac
     1561 aatttctaaa atttcatttt cttgaagttt ttcaagagcg ttttttgttt caactatagg
     1621 ctgaggacaa gatagattgc gacaatcaat tttcattatt tttccttgat attagctttg
     1681 aaaaataata ttattttatt acttgttttg tgtttaaaaa ttttaaataa tatagaaaaa
     1741 atttaaaagc tcaaaaatga gcttttttaa aatctttttt tattcacatc ttcaagaatt
     1801 gccgcagcaa tttgattgac ttcatttgtt atattattgg tgacatttgc aacttcgaca
     1861 ttttccttag ttacagtttc aagttgtgct atagcatcgt taatctgtgt gattcctgct
     1921 gtttgttctt ttacagattc tgctacttca tttacgcttt gaacaagtat attaatattt
     1981 gcctcgattt cagataagga ttttcctgtt ctttccgcaa gctgtcttac ctcatctgca
     2041 acaactgcaa aaccacgccc atgttctcca gcacgtgcag cttcaatagc tgcatttaaa
     2101 gcaagaagat tcgtttgctc agcgatatct ttaatcacat tgacaatatt ttttatatca
     2161 tcagcttgtg aagcaacctc aactgttttt ccacttacat tttgcataga agaattaatc
     2221 tcctctacgg ctacagccga ttgttctaaa gaactcgctt gtgcattaga gccatcagca
     2281 agtttttgca tagaattttt taactctttt gactgattgg ctaaatcttt agcaaaattt
     2341 gaagaagcca aaagcatctt tttaatttct ttgcctaaaa tattagttgt aatctcaact
     2401 tcacctttag cattaaatac ttctgtacta aaatcaagag ccttataact atcaaaaact
     2461 ctattaattt cattcatatt agaaccaatt ttactttgta aaacatcaag catcctatta
     2521 agaacatttt taagttctac taattgagga tttataggat ttttagtaat tcttgcagtt
     2581 aaattaccct tttcgatttc tctagcagtt tgcaccgatt catctacagc attttgatct
     2641 tgttctaaag atatttgaat cttttcaata ttttcattta tgattcttcc cattgctcct
     2701 agctcatcat tagcacgaat ttcaatagcc ttaggttcaa ttttttcatg atttaaaaaa
     2761 cggaaaaatg attctaaaga actaagaatc acaggcaatc tagatgcgac aatttttctt
     2821 acgcaataat aaaccactcc taaaacaaca aaaataaaaa taaaagatgc accaagaata
     2881 attaattgta atttttttaa gggtttaaat actgaatatt taggagcagt taccaaaact
     2941 gcccaagaac tatcttgcac tttaaaacta ttaatcgcag cataagaatc atcaccatca
     3001 gaagctatat agttaaaaac tccatttttt ccttcactta tggccttata agtttcttgt
     3061 gcacctttat taggattgat atcttttaaa ttttttaaaa ctagattttt atttggatgt
     3121 atcgccataa aaccatctga atttaaaaga actcttaatt caccatcata tttttgacct
     3181 ttagggtcta aaagataagt agcaatatct gaaaaatcta aagtcatgcc tatgacacct
     3241 acaacttgat tttttcgatc aaaaataggc atagcaacat ttacagcatc aaaatcttga
     3301 ccttctaaat tcatcttaat aggacggcct atatatactt tattttcccc atattttgct
     3361 ttttttaata tatcttgcac aacttgcaga ttagctattt catcactagc ttgtattgct
     3421 tttattccgc ctttattatc cttttcttca tcagcgtaaa gcataacaaa ttttccactt
     3481 tgagtattaa aaaatttact ctcttcttta aagtattctg gcggatcaat aagatataaa
     3541 taagtaaaat tagaataagc actattatca aaagtattgg ttataatatt tgttatattg
     3601 tctatatcta aatcttcttt agaggttgat ctaaacattt ctgttaaagt acctgaaata
     3661 cttttattta aagcgatcat ttccccaaaa attccttgag tttgagtagc atattctttc
     3721 gtgatagaag caagaatatc ttctgtattt ttggtaatat tttgacttac ttgttttgtg
     3781 attaatgaaa ttaaaataac aagtccaata acaacaacag ctgccacaga aaaaataagt
     3841 tttaaaccta tatttaaaga tttaaacatc ttataactcc taaaaaataa aaaatttaga
     3901 ttctaatttt aacatatttt taaaaaaata atattaatta attataaaaa aattatgtat
     3961 tagtattttt tgatagaaga tttatttttt ccttttaaaa acaattcttt aaagcgttta
     4021 ttagcgtatt cttctatgtc tttttgcaaa atagagtaat tttccatcaa ttccatagct
     4081 ctaggagtaa gttttgttcc tgattcttta gagcgtcctt gtcttgtgct aactaaaatt
     4141 tcttgagaat ttttttgtaa ggtttgtaaa tgcatccaag cttttttata attaatcccc
     4201 ataagtttag aagcatgtaa taaactacct gtttgtccga taagttctaa aagttctgtt
     4261 tttcctcgac caaaaagcaa atctccatcc gcattttcaa tccaagtttt tgttcttact
     4321 ataaattgct tacctttttt ttctttaaaa caaccaagtt gacaatactt tacatcaacc
     4381 ttataagttt ttaaagctga acgcatactt ttaagtccac aaccttcttt agcaatatct
     4441 cttgcatctt tacaaaaaat tctacgcttt tcatctaaac taggttctat ttttttaagc
     4501 acttcaatct ttgctttttc aaaatctaaa tgtccaaatt gccccaactc gcaattatca
     4561 attctcatgt gattttcatc ggctaattgt ccgatttttt ctatatttat attaaatttc
     4621 tttgcaattt taaaagccgt accacaatct aatttttcat tgctatttaa caattctctc
     4681 atatatgaga tgatttcttt ttcttgattt ttatccatga attctaaatt ctccactata
     4741 aatattgatc ttattttctc tagcaaaacc acaaagcgtt aaatcaaatt ttcttgctat
     4801 cataacccct aaacaagtag gagccgtgcg tgaaacaagc actggaattt tatgcataac
     4861 tgctttagct accatttcag aacttagcct tccactaacc attaaaaaac attgacttaa
     4921 atcaacccca gctaaacgtg cttttcctaa agctttatct atggtattat gttgagctat
     4981 atcttcacct ataaaaaaag ttttctcatc tacaaaaagc ttagccgtat gcacacagcc
     5041 tgttttctcg taaagctcgc attgagtata aaaagtactc atttgtttta aaatttcatc
     5101 tttgctaaat tttgcatcag aactaatttt actcgcttca atagcttctg gatcgatatt
     5161 ggcagtatgt gctctaccgc aaccacttat aactacacct tcagcattaa gctttgctaa
     5221 attttcttta tcaatctttg ctttaatatg cacactcata ccatcatctt ttgtttctat
     5281 gctctcaata tcgcttactt tcgcaatgat attttcactc attaaatatc ctattgctaa
     5341 tgcctgttca tctacaggag ttgccattaa agcacctact ttttcatcat taataaaaat
     5401 ttcaagctta atttcacgca ctaaagtatc attgcatgta aaagattcat cacctttata
     5461 ttttaaaatt tgagttgtaa ataacggatc cataccttat cctttaaata tctttaaata
     5521 atattatatc aaaaaaacat aaataacaaa tttatatatg gaaaaataga ttttagattc
     5581 aacttataaa agaaaattcg ttctatttat ttcaaaaaag cttaaaacta ccgctatgca
     5641 ataacatagc ggttaaagat taaattttta cattaggatc ataagaaaaa ctaggttcaa
     5701 tttgcttttt attgcttaat tctttatacc aataagaatg taaaatataa acctcttctt
     5761 cttctttata accactaatc atagaatgga tactgccttt gattgcaaat actgccatat
     5821 aaatatgcac accaaaaaac actgcacaca ctatacccaa gaaattatgc actatagctg
     5881 aaattctcaa aagttcaatt tgagttaaac caaaaagacc ttgaattgcc gtggaattaa
     5941 aatcaagaaa atacataaat ccacctgtaa ttatcatcaa aaatccacca aatacagcta
     6001 tataatacca agatttttga ccaaaattaa acttacctgc aggtacagga cgttttactt
     6061 tgcttaaata accacctact atcatcatcc atctgatatc ataacttgca ggaagcattc
     6121 ttttaatcca ccataaaaac atagggatta tagagatgat aaataaaacc gttgcaaaag
     6181 catgtaaatt tttacaaacc cttacaaaaa gtccgcctcc aaaagtcgcc ccaaacatca
     6241 tcacaaaacc agttggcact aaaatcaccc aagaaattgc cgcgataaaa tgaaaaagtc
     6301 tttcaaataa tgtaaaagca taaattttct ttccatcgtg tgaaaattgc ttaggtccta
     6361 taaccatata atgcaaagca aatgcagaca ataccgcaat aacagcgatt aaagctatag
     6421 tagctatata ttcaccttgc aaagttgtcc aaagtttgcc aaaagtatca taatttggga
     6481 tatttgtaat acgatgaaaa tcccaaattt gagtatcttg tcccattctc tcgctaccat
     6541 aagcaaataa actcactacg cttaataaaa gcgttacaaa tacttttctc ataagcgttc
     6601 ctttcctgtg taagcaatct tccattccaa actttccgaa ggatttggaa tgccataatt
     6661 tctattcata agtctattat gataaatctc ttctatttta gaactttcac ctactaaaag
     6721 tgcttttgtt gaacacatcg cagcacatac agggactttt ccttctgcga tacgattttg
     6781 accataaagt tctctttctt tttctgaatt cgttgcttca gggccacctg cacacatagt
     6841 acatttatcc ataatgcctt tatttccaaa aacactatct tttggaaatt gtggtgcacc
     6901 aaaaggacaa gcataaagac aatatccaca acctatgcaa atttctttat cgtgtaaaac
     6961 aataccatca gcacggatgt aaaaacaatc cacaggacaa acgatagaac aaggagcatc
     7021 atcacaatgc atacaagaaa tagaagttga aacttctttt ccttgaattc cttcatttaa
     7081 agtaatcaca cggcggcggc gaatatgaat aggaagctca tgtgcttcat cacaagctac
     7141 cgcgcaacca ttacaatcaa tacaacgctc attatcacaa aagaatttca agcgttcttt
     7201 ttctaaattt gcaaaattta ccttactcat tttccatcct tactgattct acaaagtcca
     7261 cctttagtct ctggaatctg acacatgata tcataaccat aatttgttac cgtattagca
     7321 ctttctccgc ttgcataagg cttagttcct tctgggaaat tgtgcgttaa atccacgcct
     7381 tgcataactc ctgtaaaatg gaaaggcaag aaaatcatat cttttgctac acctggatta
     7441 accttcactc ttacatgaat tttagtacct tctggagaat gcacccaaat catatctcct
     7501 gctttaatgt cttgctcttt tgctaattca ggattgatct cacaaaacat ttcaggtgtt
     7561 aaacgcgtta gatacataga tgctctattt tccatacctg caccatttaa attcacaagt
     7621 cttgcagtaa caagattaag cgggaattct ttagaataat ccttagcttg ttgcacagaa
     7681 acaaatttag tatccacgcg gtaaagcgct ttttgatctt caaaacttgg atatttttgc
     7741 accaaatcgt ttcttggaga atgtaaaggc tcacggtgga gtggaatttt atctttaaaa
     7801 gtccaaacta cagctctagc tttagcattt ccataaggaa ctatgccttt ttctatacat
     7861 ttagttgcta tgatattgct atcatcataa gaccaagttg atcccatttt ttctttttct
     7921 tgagcactta aagtaatacc taaaactttt tctatattat ctttagtaat ttgtggataa
     7981 cctgtatcaa taggtgaatt taaaggtgca tttttagcaa gtaaactctc tccttcatat
     8041 tcaagtccaa aattgtttct aaagcccata ccaccttttg ctacttcaat gtcggtatta
     8101 taaagcacag gagaacctgg gtgcttatca ctccaacaag gccaaggaag cccgtaatac
     8161 tcgccagcaa cttcgtcttt tccttctaaa gttacctcat caaatttatc ccagtataaa
     8221 gtatgctttt taagcctttc aggactccaa ccattaagcc ctatacttct aactgctttt
     8281 gcaatttctc ttgttgcatt ttcaggccaa acaatctcac ctttttcatc gcgtaaagtc
     8341 ttggtaaagt cttcataaaa acctaatttt ttagcaagct caaataaaat ttcttgatct
     8401 tccatgcttt cataaagtgg atctacaact ttaaatctcc attgtccgct acgatttgtt
     8461 gctgttacac ttccgcttgt ttcaaactgt gttgctgcag gtaaaagata aattccatct
     8521 tttctttctg caataatccc tgcttcattt acaaaaggat cggctaaaac taaaagctct
     8581 aaagcttcca aaccttcttt aacttttact tgttgtgcag tcgaagtaat accatttccc
     8641 ataactacta aagcttttaa aggcgttcct gcattatcga tagcatcatt tccatctttt
     8701 ccatttaaag ccgctgccca ccatctagca agtgaaagtc cagttttatg catccaatct
     8761 ttacttacaa aatttcctaa aagccactca taatccacac cccaaatttt ggcatagtat
     8821 ctccaagtcg cttcatttaa aggataataa cctggcaaat tttcgcttaa acaagccata
     8881 tctgaagcac cttgaacatt atcgtgtccg cgtaagatat taactccacc accaaattta
     8941 cctatatttc caagtaccat ttgcacaata ggtgctaaac gtgtatttga agttcctaca
     9001 gtatgttgag ttaaacccat agcccaaata agcgtagttg gtttgttttt agctacttcg
     9061 tgagtgattt gcaccaaaag ttctttagag atccctgtaa cattttccac ttcttcagct
     9121 gtccattttg ctgcttcttc acgaatttta tcaattccaa aaactctttc atcaagatat
     9181 tttgtatctt ccaagccttc atcaaaaatg atttttaaca ttccatacat gaaagcaatg
     9241 tcagttcctg gacgaattct tgcataaata tccgcttttg ctgcactttt tgtaaatcta
     9301 ggatctacaa cgataagctt tgcacctttt tcttttgctt ttaagaaatg tctaaaaccc
     9361 acggggtgat ttaccgctgg atttgctcca atgataatga tacatttact tctttggatg
     9421 tctccaagat ggtttgtcat agcgccataa ccaaatgtat tcgccacacc ggcgactgtt
     9481 gcgctgtgtc aaattctagc ttgatgatct acattgttcg ttccaaaaaa tgctgcaaat
     9541 tttcttatat aataagcttg ttcattatta agttttgcag aacctaaaaa cataacactt
     9601 tcaggatttt ctttacgata agcagctagt ttttctccga tctcacttaa agcttgctca
     9661 taacttatgc gtttccattc tccattttct tttttcatag gatattttaa acgcacatgt
     9721 gaacgcacca tatcgatcat atcagatccc ttgcagcaat gtccacctga actcacagga
     9781 tgatcttgag caatttcttg acgcacccaa acaccatttt gcacttctgc aataatccca
     9841 cagcctacag aacaggctgt acaaactgtt tttacttttt tactaccttc atacgcttct
     9901 ttaagctcat cagcactcgc ttctcttaaa gtttcacttc tagcaagcaa cggtgttgct
     9961 aggcttgaaa gtgctgccat tttaagaaaa gaacgacgcg taagcttgat attttcacct
    10021 acacttgaca ttactcagcc tttatataat atttttccca attagcactt ctttgaaaaa
    10081 gcacttcttt tttcttactt ttacctttaa ccaaatcttt tctttcttca tctttagcta
    10141 gagctaaagt cgtgctacca agcactccag cagcccctaa ggcaaaagcg gattttttaa
    10201 gaaattccct gcgatttttc acgagtcctc ctttgtttat ttgcttctct tcttaaaaat
    10261 tctgaacgcg atagatcgtt ttgcactttt ttagaattta tttttgcagg tttttccact
    10321 tcaaagcaaa gtctttcaaa ttccataaaa gccgatgcaa tacttgcaat ttccttatat
    10381 aaattcgcat ttttattcat gaaaacatcg cctaaaaact catcaatgct tttattgatc
    10441 actttttcaa aaagctcttt ggctaaatca tcttcatttt gccttaaaaa ttcactcatc
    10501 aacaataaac aaaatccaac actatcttca ctttctttaa aaaatttttc attgcgtctt
    10561 attttacttt tgactaaaat ttgacgcacg caaagtaaag gatttgaatt ttcaaaacct
    10621 tcttctatgt aagaaaaagt cgttggaatg ctatttttaa gacttaaaaa aagcaaatca
    10681 tattctttaa aaaatgcttg tatagaattt tcatcatcta aatgcttaag caagatatca
    10741 aaat
//
LOCUS       DARGED010000047        10679 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.047, whole genome shotgun sequence.
ACCESSION   DARGED010000047 DARGED010000000
VERSION     DARGED010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.047"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(94..780)
                     /locus_tag="SFZ84_000962"
     CDS             complement(94..780)
                     /locus_tag="SFZ84_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8203084.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKFKCFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVI
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            859..1668
                     /locus_tag="SFZ84_000963"
     CDS             859..1668
                     /locus_tag="SFZ84_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8203085.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            1810..2577
                     /locus_tag="SFZ84_000964"
     CDS             1810..2577
                     /locus_tag="SFZ84_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG8203086.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            2587..3327
                     /gene="pxpB"
                     /locus_tag="SFZ84_000965"
     CDS             2587..3327
                     /gene="pxpB"
                     /locus_tag="SFZ84_000965"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG8203087.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3308..4273
                     /locus_tag="SFZ84_000966"
     CDS             3308..4273
                     /locus_tag="SFZ84_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG8203088.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4270..5166)
                     /locus_tag="SFZ84_000967"
     CDS             complement(4270..5166)
                     /locus_tag="SFZ84_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8203089.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILVNYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALIAVFNHKAKGAHPLAINFYINLMSLLMFSWVLFDLKSYEIFQFDFK
                     FWINLFVVAFLSTVVGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(5199..5777)
                     /locus_tag="SFZ84_000968"
     CDS             complement(5199..5777)
                     /locus_tag="SFZ84_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8203090.1"
                     /translation="MKNILLLNGAKEFGSSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            5877..6224
                     /locus_tag="SFZ84_000969"
     CDS             5877..6224
                     /locus_tag="SFZ84_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8203091.1"
                     /translation="MTKENSQCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            6212..6662
                     /locus_tag="SFZ84_000970"
                     /pseudo
     CDS             6212..6662
                     /locus_tag="SFZ84_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
     gene            complement(6664..7740)
                     /locus_tag="SFZ84_000971"
     CDS             complement(6664..7740)
                     /locus_tag="SFZ84_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG8203092.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYTGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSTYMDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            7870..10179
                     /locus_tag="SFZ84_000972"
     CDS             7870..10179
                     /locus_tag="SFZ84_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8203093.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRNHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENIQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGEFEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCVNQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDENALKDLREIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVRELADEFGGLEILKQSFDDLQREIYAR"
     gene            10183..>10679
                     /locus_tag="SFZ84_000973"
     CDS             10183..>10679
                     /locus_tag="SFZ84_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8203094.1"
                     /translation="MKILKFNEINFGSYKNFKWGNNLEEFKTINIFYGRNYSGKTTLS
                     RIARSFELKKHNEDFLDGNFKIKLEDGSFLTQNDVINSNLDIRVYNSDFVKENLNYLY
                     DKKGNIKGFKSIGVEQKDIKESIEKRKEILKTRNEKLKDIQANRENISKTQQAKIKTL
                     NEKLI"
BASE COUNT         4033 a         1503 c         1812 g         3331 t
ORIGIN      
        1 atgctaattt tacttgtatc aagttttaaa tttttgattt ttaaaacttc tttgttttga
       61 tagttgaaaa aaagattaga aatttctatc attttatgtt cttttgagtt tgtgcgtgat
      121 gaaatttaaa caaaaggcaa tgagaattaa aaccaaagcc aaagctatac cgctagcaaa
      181 ttcgcctttg tttgtttcaa gagaaatagc tgtggttatg gttctagtgt cgtatttgat
      241 atttccacct actatcatcg ctactcctac ttctgctaca atgcgtccat aagctagtgc
      301 aatgacgcta atcaaagcaa agcgtaattc ataaatcatc gttaaaacaa gttttaaagg
      361 acttaggtga aaagatttta taagtaaaaa atgtttttta ttcatatttt ctatcaaatt
      421 tgaaaaaagt gcgatcacta taggaagcgc taagataaac tgccctaaaa ttaaagcctt
      481 tatagtaaaa agcagtccaa attctcccaa aggtcctcga cttgaaatca gtgcataaag
      541 tataagtcct actgcaactg ttggaaaaga aaggctagta tctatgataa gttttataaa
      601 gcatttgaat ttaaaatcaa aaaaacctaa gataaatccc aaaggaaaac ctataagcaa
      661 agctaaaact atagaaatac ttgagcttaa aagtgtagtt tttatagctg aaattacgct
      721 ttcatcagca ttgaaaagta aaaataaagc ctgtttaaaa ccatcaaaaa tataatccaa
      781 aaatatcctt tttaaaataa gtaattttag cataattatg ctaaaatatt tttttatgta
      841 aatttataag gaaaaaaaat gaaaaaaatc atttctttag cccttgcttt agctttaagt
      901 gcaagtgcag cagaacttaa aatggcaact acaacaagca ctgacaatac aggactttta
      961 gatgctctaa aacctcttta tgaaaaagaa agtggcaata ccttaaaatg ggttgccgta
     1021 ggaacaggtg cggctttaaa aatgggtgaa gattgcaatg ctgatgtgct ttttgtgcat
     1081 tctccaaagg ctgaaaaaga atttatgaaa aaaggctttg gtgtagatag aactcctgtg
     1141 atgtataatg attttatcat catcgcagat aaatctttag cttctaaatt taaaggtaaa
     1201 aatttaaaag aaagcttaga acttatcaaa aatgaaaagc ttactttcat ctcaagaggc
     1261 gataaatcag gcactgacaa taaagaaaaa agcctttgga aaaatcttgg cggtgttcct
     1321 gaaaagcaaa gctggtatca acaaagcgga caaggtatgt tagcaagcat taaaatcgct
     1381 gaagaaaaaa aaggtgtgat tttaaccgat cgtggtactt atatcaaata tgaagccaat
     1441 gaaaaaggca aaccaaactt agtcattgta aatgaaggcg atgatagtct taaaaatttt
     1501 tattctgtta tagcgacaaa tcctaagcat tgtaaaaatg taaattatac agaagctagt
     1561 aaatttatca aatgggtaac aagtgataag actttaaatt tcattgctga ttttaaactt
     1621 cttaataaac ctttatttgt aattgatgca aaaacaagaa aagactaaaa attaagcagg
     1681 ttttaacctg cttaaaatat cattttttac ttattgtaac ttttttattt atttttcaaa
     1741 acttttagtt tatttaaaat tcttctttag atataataaa atcaataatt aaatatacaa
     1801 ggtcaaataa tgttcaaagt ggatttaaat agtgatttag gggaaagttt tggcgcctat
     1861 aaaatgggaa tggatgaaga aattttaaaa tttgtaagtt cagtaaatgt cgcttgtggc
     1921 tttcatgcgg gtgatccttg tgtgatggat gaaaccttaa atttagccaa gcaaaatggt
     1981 gtttgcatag gagcacatcc atcttatcct gatcttttgg gttttggaag acgcaatatg
     2041 caaataagct ttgaagaggc taaaaactat gccttgtatc aactaggagc tttatttggc
     2101 tttgctaagg caaaaggtat gaaaatacag cattttaaag cccatggggc gctttataat
     2161 atggcagcta ttgatgaaaa tttagcctta gcactttgtg aggcagtggc gagttttgat
     2221 gaaaatatta tttttctagg gcttagtaat tctgctatga atgaagcagc taagaaaaag
     2281 ggtttaagat atgctaatga agtttttgcg gatcgtgcct ataatgatga tggcacttta
     2341 gtttcaagaa aattagaagg ggcgttaata cacgatgaaa atttagctat caaacgcgtg
     2401 ataaaaatga taaaagaaag caaagttaca agcataaatg gcaaagaaat tgatttaaaa
     2461 gccgatagta tttgtgttca tggggataat gcaaaagctt tagaatttgt taaaaaaatc
     2521 aaagaaaatt taaaaaaaga gcaaattcaa atttgtgctt tggaaaattt tatataagtt
     2581 ttagcaatgt ttagtgtgca ttttagtgga agtaaagctt tgcttttgcg ttttgagcaa
     2641 gaaatttcac ctcaaatcaa tgcctatgtt ttaagcacag aacaaaggat acaaaaagcc
     2701 ctaaaagaag gtgaaattta tggtattgat gagttggtaa gtacttatgc aagtttgttg
     2761 atatacttta atccttgcgt gctttcttta aattctttgc ttgatttttt ggaaaaaatt
     2821 aaaaaggata tcaaacttac ggagcaaaac tcaagtcttt gtatagaagt tccactttgt
     2881 tatgatgaag aatttgggct ggatttagaa tttgtgtgca aacacaatca aatttcaaaa
     2941 gaagagctta tatctcttca cactaaacct tattatcttg tttttatgct aggttttatg
     3001 gcaggttttc cttatcttgg aggtttagat gaaagacttt ttaccccacg cctttcaagc
     3061 cctagagcaa aaatagaagc tggaagtgta ggcatagctg ataagcaaac aggagtttat
     3121 cctatatcaa gcccaggggg ttggcaaatc attgctagaa cacctttgga attttttgat
     3181 aaagaagatg aaaaaaatcc cactctttta aaagcgggta tgtttttaaa atttaaagcc
     3241 atttcaaaag atgaattttt cgatatccaa gagcaagttg ctaaaaaagt ctatcaaaag
     3301 gaaatttatg agtataaaaa tcattgaagc gtctataaat tcaagtttgc aagactttgg
     3361 tagaaaaaaa tttgctaaat ttggcatagc aagaagtgga gctatggatg aagatgcttt
     3421 aagaatggca aatatcttgc ttggaaacaa acaagatgaa gcaggaattg agctttgttt
     3481 aaagggtgga aaatacgaat ttttagatga gaattatttt gttttaagtg gagctgaatt
     3541 tgaggcaaag cttgataatc aaaaaatcaa aacttgcaaa gtatatcaag caaataaagg
     3601 cgatatttta gaacttgatt tagcaaaaat aggttttcgt gggtatttat gcgtagcggg
     3661 tggctttgaa gtaaaaagtt ttttaaactc taaatccagt gatgctaaaa tgggagctgg
     3721 agtttttgaa ggaagagctt tgcaaaaaga tgatatttta aatactcata atacttttat
     3781 accttttaat ttagaagcta gagaatgtga aaaccctctt tttaaaagcc ctaaagagcc
     3841 tattatacgc gttattttag gaacaaatga agatgctttt acccaaaaag gcatagaaac
     3901 ctttttaaat actacttata aagtaggttt aaaaagcgat agaatggcaa tttatgcaga
     3961 atctagtgaa agtatagagc ataaaaactc agcagatatc atctcagatc ctgcggtttt
     4021 tggaagtata caagtgccaa aaagtggtat tcctatcatt ttaatggcag gaagacaaag
     4081 cacaggaggc tatacaaaaa tagccacggt tatagaaaat gatctaagct tactcgcaca
     4141 agctaagtta ggttctagct ttaaatttca aagcattagc atgcaagaag ccttagaact
     4201 ttataaacaa agagaaatga aatttaaagc tatggatcaa aaaatcaatc ttgattttga
     4261 aaatttaatc taagcttttt taccataaat attgataaaa tatatagcac ctatagccaa
     4321 ggcacaacct aacaaggtaa gtgcatttgg cacctcgtct agtataaaat aactgcaaat
     4381 taaagcacta gcaggagtga ttaaaacaaa agaatttgct tttacgcttc ctaaaatgtg
     4441 aattccataa taatatatac tcgtacctac caccgtagat aaaaaagcca ccacaaaaag
     4501 attgatccaa aatttaaaat caaattgaaa gatctcataa cttttaagat caaacaacac
     4561 ccatgaaaac atcaataacg acataaggtt gatataaaag ttaatcgcca aagggtgagc
     4621 tcctttggct ttatgattaa acactgctat caaagcccaa ataaaagaac aagttaaaaa
     4681 taaaatatta aatttaccaa ataaatcttc taaactccct aaatttagca aacaaaatcc
     4741 agataataaa cctaaaaata agcctagaat ttcactcttt gtgatcttgt gagttgattt
     4801 tttgtttttt tgaaaaaata tcgctatcat aaatatcaaa taagaaaaaa taggaatcat
     4861 agtggttact aaaactcctc ctttgcctgc caagccgtgc tttatagcga taaaaaatac
     4921 aaaggcataa agcccattta aaactcctgc tatcaatacc cattttaagg cagttttttc
     4981 gattttaaga ggaattttta agaagtttaa aacaaaaaat gaacccaata caacaaagaa
     5041 aaaacgccaa aaggtaataa tagaagtatc cgtataattt actaaaatct tagatgttgg
     5101 ccaagatgag ccccataaaa acatagcaat aacaagcaag atatacaaat actttgttcg
     5161 agtcaatgtt acaccttgaa atttttaagt caaatttttt aaaaaatttt tttcaagtgt
     5221 agttcatact cgtttagata tttttccact tgaggatttt ttaccacatc attacacata
     5281 aaagttggta aagctttcat acctataaat tcatgagcct tatgcaaatg ccaatacacc
     5341 atatctacac cctttccttc aaaaaattca tttttatcat taaaggcttc aagaggtgca
     5401 ttccaagtga gagaaaacat gtatttttta ccatgatcta aaccaccttt tccgtagttt
     5461 ttactaggat tttcatgagt tcttccatca tttttaaaaa gcactccagc acccaaacca
     5521 aacacttcat cgatatattt tttaactatc caaggctcgc ccatccacca agctggcatt
     5581 tgatagatca cagcatcagc ttttataaat ttttgtatct cttctttagg atcatatcct
     5641 tgatctatgt gagtttgatc tacttcgtat cctaatgttt ttaaaatttc taaagcatga
     5701 ttatgcaatg tcaaattaag ctgtcctttt gaacttccaa attctttagc accattaagc
     5761 aagagtatat ttttcatttt tatccttttt taaattttat gatacaatta taacttagca
     5821 taatatcatt ttcaatacag aaaataaagt aatatactat actaaaggaa tgttaaatga
     5881 ctaaagagaa ttctcagtgc aatttcgaag aatgtggatt taactatact ctagcattaa
     5941 ttaatggaaa atataaaatg agtattttat actgcttatt tcgctatgaa atcgtacgtt
     6001 ataatgaact caaacgcttt ttaagctcca tatcttttaa aactttaacc aataccttaa
     6061 gagaactaga aaacgatggt ttaattatca gaaaagaata cgctcaaatt ccacccaagg
     6121 tagaatatag cttatccaaa cgtggacaaa gtttaattcc cattttacaa gctatgagca
     6181 aatggggcaa gaaagacaaa aaagggaaaa aatgcttgaa ttaattggcg aactttcttt
     6241 gcaaaattat atgggagaat ggcttgaaat ggctagaaaa ccggcctttt ttcaaaaatc
     6301 ttgcctaaat tcaaaggcaa aatacgagct taaatacaaa aatggcattc cttatgtaga
     6361 aattgagaat ttttgcagta aaaaaatgaa atttcaagta taaagggtaa ggcaaaaatc
     6421 gtttcaaata ggcaattagc agtgagattt aacatcttta tgaacctttt taataaagta
     6481 aattatgaaa tcatttttgt tgatagcgag tataaagttg ccattgtggg tagtcctgat
     6541 aaaaaatatc tttggatttt agcaagaaat ataatagatg aaaaaaatat aaaagagctt
     6601 ttaaacatcg ctaagcaaaa aggggatttg acattagcga tgtggttttt gataagtatt
     6661 aaattattct tttgtcatat caatgacata gcgaaattta gcctttcctg aggttagatt
     6721 ttcataagct ttatcgattt cttgtggggt gataagctcg gtttctggat aaatttcatg
     6781 ttttaaagaa aaatcaagca tttcttgagt ttctgcgatc ccgccgatta gcgaaccata
     6841 gactttttta cccgctttat gtacaaaggt tatcacgctg atacttggag caacttcgtg
     6901 aggtggcaaa cccactatcg ccatttcacc gccaaattta agcaaatcca tataagtact
     6961 aggatcataa ggagttggga tggtagagat gataagatca aagcgttctt ttacagcatt
     7021 tttatctgtg cttgtataaa aagaactcac gcccatagcc aaagcatcgg cttttttgtt
     7081 ttcatttcta gcaaaaacgc taacctttgc acccatttta acagcatatt taaccgccat
     7141 cataccaagt ccgccaaatc ccgctactgc tacgcttgag ccttctttga tatttgaaaa
     7201 tttaagcgga gaataagtgg taattcctgc acaaagcaaa ggcgcgactt tttccatcgg
     7261 tgcatctttt ggcacacaaa cggcaaattt ttcacttaca actatgttgt ttgagtagcc
     7321 cccataagtg ttttcattgc catgaaatac atcacaacta ttgtaagtaa agatggtttt
     7381 gccattttcg caaaactgct cttgtgagcg tttgcaagca tcgcactcac cgcatgaatt
     7441 taccatacaa ccaacccctg tgtaatctcc tactttaaat ttgcttacat ttttacccac
     7501 agcgataact tctcctgcta tctcatgccc aggcacgcaa ggataagtag cttctcccca
     7561 ctcgcttctt gcggtgtgaa tatcgctatg acaaatacct gcatatagga ttttaatcaa
     7621 aatatcatta tcgccaatag catggcgact aaattcaaag ggtgtaaatt tcgcatcctt
     7681 gctaagcatt gcatagcctt tacttgcgat gcgattgttt tctaaaattt tgtattgcat
     7741 ttttgctcct tttttgattt tttataatta taaaacatta gagtagctat aagtcaagag
     7801 tgaaaataat tttttaaaaa ttagtataaa tgctataatt ataaaattta atttcacttt
     7861 ggggtaaaaa tgcaaaattt gtattcagaa gatgatacta gagtaaaatt tatagatgca
     7921 aagctttatg atagttcttg gaatgaagaa aatataaaaa gaaattatta ttttacagat
     7981 ggtagaaagc ttttaggtgg taaaagagca caaagaaaat ttgcagatta tttgcttaga
     8041 tatgaaggaa acaaccttgc tataatagaa gctaaaaaat ttagtaaaga tcctttagat
     8101 ggtttatctc aaggcataga atatgcaaaa attttaaatg tgccttttgt atatagtagc
     8161 aatggagaaa aaatttatga atacgatata agaaatcata gtggtaaata tatagataaa
     8221 ttcccaagtc ctaaagagct ttttgatagg atttatggca atgtcaaaga atggcaatac
     8281 aggcttttaa cccaaaatgt tatgtatatt ccgcaaaaag aattaagata ttatcaaaaa
     8341 atagccatag acaaagtcat agaagctatt ataaataaca aaaatagaat tttactcact
     8401 cttgctacag gcacaggaaa aacaaccata gcttttaatt tgtgctatcg tttgcttgaa
     8461 gctagatgga ataaagaaaa caaagatcaa aagcctaaaa tactattttt atgtgataga
     8521 gtgagcttaa gagatcaagc cttaggagaa tttaatccta tagaaagtga ttgtaaggca
     8581 attagtgctg aagaaataaa gaaaaatgat ggaaaaatca taacaaatgc aaatattttc
     8641 tttggaattt atcaaagctt agccgcaaat tcaaaagaac aagaaaacat ccaagaagaa
     8701 caagagagca aattttatct tcaataccca aaagattttt ttgatcttat catcatagat
     8761 gagtgccaca gaggtggagc aaacgaagaa ggaagctgga gagctgtgct tgagtatttt
     8821 tcttatgcga ctcagcttgg tttaaccgct actccaaaaa aagaagaaaa tatagacact
     8881 tatgagtatt ttggtgagag tgtttatgat tatagtctta aaagtggtat tgaagatgga
     8941 tttttaaccc cttataaagt caaactcata aaaacaactt tgagtgatgg ttatacttac
     9001 aatcctgatg atttgataca aggtgagttt gaaaaaggct tttataaaca aagtgagttt
     9061 gaaagaaata tctttttacc aaactataat gactttatcg ctaagaaaat tttagagctt
     9121 ataaatccta tggataaaac cataattttt tgtgtaaatc aagctcatgc aaatgaagta
     9181 aaaagagcta tagataaata taaaagtgtt aaaagagatg attattgtgt aagagttacg
     9241 agtgatgaag gtaaaatagg gcttgattat ctaaaattgt ttcaagataa tgataaaagc
     9301 tatcctgtca tacttactag ctctaaaatg ctcacaactg gagtggatgc aaaaaatgtg
     9361 cgaaatatag tattgctagc aaatataggt tctatggtgg aatttaagca aattatcggg
     9421 cgtggcacta gggtttatga aggcaaagac ttttttacca tacttgattt tgtcggtgcg
     9481 actaagcttt tttatgatcc aaaatgggat ggtgaaaaaa tagaagaatt aaaagagcaa
     9541 gatgaaaaag aaaaaatcac taaagagcat ataaaacaaa caaaagaaga aagcaaagaa
     9601 aaaaagagcg taaccataca cttaaaaggc acaaaactta aggttttaga tatcacaact
     9661 acttatgtag gagcacaagg taagccactt agcactaagg agtttttgga atttttgata
     9721 ggaaagcttg gtgagtatta tgatgatgaa gcaaaattgc gtgaaatttg gagtgatcaa
     9781 aaaaatagag aaagattttt aaaagccctt gcaaatgatg gagtagatga aaatgcttta
     9841 aaagatctaa gagaaatttt tcaaaaagat tgtgatatat acgatgtttt agcgcattta
     9901 agctttaatg ccgagataaa aacaaggcaa gagcgtgttt tacaagtaga aaatggtgag
     9961 tttttaaaac gctttcaaaa agaaaaggct ataaaattta tagaattttt actaaataga
    10021 tatcaagaat acggcataaa agattttgat gatggcttaa aaccacttat agaacttagt
    10081 tctttgggta atgtaagaga attggccgat gaatttggtg gcttagaaat tctaaaacaa
    10141 agctttgatg atttacaaag ggagatttat gcgaggtaaa aaatgaaaat tttaaaattt
    10201 aatgaaataa attttggctc ttataaaaat tttaaatggg gtaataatct tgaagaattt
    10261 aaaacaatta atatttttta tggtagaaat tattcaggta aaactacact ttcaaggata
    10321 gctagaagtt ttgagcttaa aaaacataat gaagattttt tggatggaaa ttttaaaata
    10381 aaactagaag atggtagttt tttaacccaa aatgatgtta taaattctaa tctagatatt
    10441 agagtttata atagtgattt tgtaaaggaa aatttaaatt atttatatga taaaaaagga
    10501 aatataaaag gttttaaaag tataggtgtg gagcaaaaag atataaaaga aagtattgaa
    10561 aaaagaaagg aaattttaaa aacaagaaat gaaaaattaa aagatataca agccaatcgg
    10621 gaaaatattt ctaaaacaca acaagctaaa ataaaaactt taaacgaaaa gcttataga
//
LOCUS       DARGED010000048        10671 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.048, whole genome shotgun sequence.
ACCESSION   DARGED010000048 DARGED010000000
VERSION     DARGED010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10671
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.048"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..866
                     /locus_tag="SFZ84_000974"
     CDS             <1..866
                     /locus_tag="SFZ84_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEG8203095.1"
                     /translation="PLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDFLDKYKYLEKF
                     GDEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPEKKIEILKTLADK
                     EKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIKELKEIK
                     HNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLSYKIAADIVL
                     DAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFLALIEGIQAPS
                     LKNHTLKVSLI"
     gene            863..1246
                     /locus_tag="SFZ84_000975"
     CDS             863..1246
                     /locus_tag="SFZ84_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8203096.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1239..1922
                     /gene="rsmD"
                     /locus_tag="SFZ84_000976"
     CDS             1239..1922
                     /gene="rsmD"
                     /locus_tag="SFZ84_000976"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEG8203097.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPLKEKIKKTKETKLYT
                     NIESGKYKGKKLLLPSFTTTRSTKSIVKSCVFNVIRENLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            1981..3027
                     /locus_tag="SFZ84_000977"
     CDS             1981..3027
                     /locus_tag="SFZ84_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG8203098.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNSDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3027..3368
                     /locus_tag="SFZ84_000978"
     CDS             3027..3368
                     /locus_tag="SFZ84_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203099.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKTKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3431..3628
                     /gene="flgM"
                     /locus_tag="SFZ84_000979"
     CDS             3431..3628
                     /gene="flgM"
                     /locus_tag="SFZ84_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG8203100.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3670..4104
                     /locus_tag="SFZ84_000980"
     CDS             3670..4104
                     /locus_tag="SFZ84_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG8203101.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4114..5940
                     /gene="flgK"
                     /locus_tag="SFZ84_000981"
     CDS             4114..5940
                     /gene="flgK"
                     /locus_tag="SFZ84_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG8203102.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            5957..6721
                     /locus_tag="SFZ84_000982"
     CDS             5957..6721
                     /locus_tag="SFZ84_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG8203103.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6725..7489
                     /locus_tag="SFZ84_000983"
     CDS             6725..7489
                     /locus_tag="SFZ84_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG8203104.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7482..8663)
                     /locus_tag="SFZ84_000984"
     CDS             complement(7482..8663)
                     /locus_tag="SFZ84_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG8203105.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8660..10219)
                     /locus_tag="SFZ84_000985"
     CDS             complement(8660..10219)
                     /locus_tag="SFZ84_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG8203106.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLHKLNLGDKNLKILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDAFST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10209..>10671)
                     /locus_tag="SFZ84_000986"
     CDS             complement(10209..>10671)
                     /locus_tag="SFZ84_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8203107.1"
                     /translation="KYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKEL
                     EEVKVVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIF
                     WALKANELDKQKQDSWLIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4043 a         1665 c         1547 g         3416 t
ORIGIN      
        1 cacctttaga aaaaatagca aaagaatttg attttagtct ttgtatcgag cctttaagca
       61 caaaaagagc cattaaagat cttatcatcg ataaaaatga ttttttagac aaatacaaat
      121 atcttgaaaa atttggtgat gaagaggata aaaaacttta tgcaaaatat gattatttat
      181 attatgcaag tgaaatttta gactatcttc ctgaatatat gggcgatgga gtgttttatt
      241 tggcttcaaa aatgatagaa aaatatcctg aaaaaaagat agaaatttta aaaactctag
      301 cagataaaga aaagggtatt ttttatcatc ttgaaagcaa aaatgaaatt ttagaaacaa
      361 cgatcaaaaa cctacaaaat gaaattttaa atttagggct ttttgataaa aatattttac
      421 actttgattt acctaaaacc aatgcttttg ataatgagat caaagaactt aaagaaatta
      481 aacataattt taaagatttc aatatagctt tttatggttt taatgcttgc gatactttaa
      541 aatccaaact taaggctaaa tttatttcct atgaaaacag tataaaaaat aatggcttta
      601 gcttgcttaa tctaaatcct acgctaagct ataaaatagc cgcagatatt gttttggacg
      661 cttatgatag cggggctgat tttatggtag taaaagaaga aaaagatttt tatctttttg
      721 atacttgtgc taaaaaactt atgcaaacaa gtggaaggga atttgaagac ttttatattt
      781 tgagccgttt tgagttttta gcccttatcg aaggcataca agctccatca ttaaaaaatc
      841 acactttaaa ggttagtttg atatgaaaat ctctttagaa tgcaaagatc tcatcataga
      901 aaaaacttta gaactttttt taaaagatca tttggtaatg aaaaaaaatt gtgatttcat
      961 cattagcgat gaaaaaattt ataccgcaaa acccttattt atcatctcta aaaactctcc
     1021 atttttaagc ataccattta gcaaagaagc cttgtttgag tctttaaatg aatttgataa
     1081 tgccttaaaa gcagcagctt tgcaacttgc acttgaacaa aaaagactgc ttgaagaaaa
     1141 aattgacgct attgctttgg aatttaaaaa agattatgaa aataaaatcg atcttgccat
     1201 aaaagatctt aaaaacaaac tcgtaaaagc acttaatgat gaatgatgaa tttataagcg
     1261 ttaaagactt ttttaatcac aatgaaaaaa gaaaaaaatt tcttcaaaaa caagaaatta
     1321 aacctcttaa agaaaaaata aaaaaaacta aagaaacaaa gctttataca aatatagaaa
     1381 gtggtaaata caaagggaaa aaactacttt tacctagttt tacaacaaca agaagtacta
     1441 aaagcatagt caaaagttgt gtttttaatg taataagaga aaatttaaga agtaaaattt
     1501 tcattgaagc ctttggagga agtgctttaa tggcggctga agcactaagt aatcatgctt
     1561 taaaagctta tgctatagaa cttgatgtaa aagcttataa aattgcttta gaaaatgcta
     1621 aaaatataga tccaaattta gaagtgatcc atgcaaatac ttttgaaatt ttacctaaac
     1681 tcatagaaaa ttcaaaaaat gaaatcatct tatatcttga cccacctttt gataccagag
     1741 aaggttttag cgatatttat gaaaaaattt atcatttttt agaaaattta gatttaaaga
     1801 ctttaaattt aatcattttt gaacaccact caaccataaa aactcccgaa aaaatccaaa
     1861 attttcaaaa agtcaaagaa aagaaatttg gatcaactag cttaagcttt tacgcttctt
     1921 aacttacttg gaacacttct tgcttgatct atcatcaaca atagattaaa ggaagaatcc
     1981 atgagagttt taacgatatt tttactcttt atgacaagca tttttgcagt gcaaatcaag
     2041 gatgtagcaa acactgtagg tgtaagagat aaccaactta taggttatgg acttgttgta
     2101 gggcttaatg gaagcggcga tgggacaagc tctaaattta cactacaatc catctcaaac
     2161 cttttgcaag gtatgaatat caaagtagat cctaacgata tcaaatcaaa aaataccgca
     2221 gctgttatgg ttacagccaa acttccggcc tttgcaaaaa gcggagataa acttgatatt
     2281 accgtttcat ctatgggtga tgcaaaatct ttacaaggcg gaacactttt actgactgca
     2341 cttcgtggga ttgatggtga aatttatgct atagcacaag gctctatctc aacaggaggt
     2401 ttaacaccta gaccaggagg agcaggttct cactcaactg ctgcaaccgt aatgggcgga
     2461 gctaatgtag aaagagaaat tccacaaaat tttagtcaaa acagtgatct aaccttaagt
     2521 ttaaaagtag cggactttaa aaccgcaaat gatatagaaa gagttttaaa tactgtcttt
     2581 ggcgaagaag tagctaaagc tatcgactct cgcacagtaa aactcaaaaa acctgaagat
     2641 ctttcaaatg ttgattttat ggcaagagtt ttagaacaag atatagctta taaaccacaa
     2701 agcaaagtta tcatcgatga aagaacagga acagtgattg ctggagttga tgtagaggta
     2761 gaacctgttt taatcactca taaagatatc accataaaaa tagatccaaa caataacgca
     2821 gtagctaatc aaaatgaaat cgatatgaaa gatggtggtt ttgtagatcc aagttcaaat
     2881 accttaagaa tcaacaatgc aaaaagcaca gttgcgaata tagctagaat gcttaacaaa
     2941 cttggagcaa ccccaaatga cattatcgct attatggaaa atttaaagcg cgcaggtgca
     3001 attaacgcgg atttggagat catctaatga aagtggataa ttttttaaat acttatagta
     3061 tgaatagcgc tttacttgat cgtgcagcca aagcaagaag cttagaatca agtattaaaa
     3121 taaatgataa tgatatagtt acaaaaacca aagaagatga agccttaaaa gaacaaacag
     3181 atgcttttga agcatttttt ttaaagcaag ttttagatgt atctttaaaa agtcaaaatt
     3241 cactctttgg aaaagatgcc agtgatgaaa tatactcttc catgtataac gatactatga
     3301 gtaaagcttt aagtggaggt atgggttttt caaaattatt atacgatttt ttaaaagaaa
     3361 ggggttaagt tttttaaatt tgggtcgata tggtttgtag aggattataa ctaagatcaa
     3421 ggaggcagaa atgatcaatc ctatacaaca aagttatgtg gcaaatacca cattaaatac
     3481 aaatagaata gataaagaaa ctaaaacaaa cgatactcaa aaaacggaaa atgataaagc
     3541 gagtaaaatc gcagagcaga ttaaaaacgg tacttataaa atcgatacaa aagctacggc
     3601 tgctgcgatt gctgactctt taatctaaaa ctttcattct cctttttttg agagagaaaa
     3661 ggagaaaata tgcttaaaca aagacttgat gaagtaaatg ctatcttagc aaaacttatt
     3721 gctttaaccg aagaagatat agaaaatatc aaagtggcta aacatgagag tgtaacgcca
     3781 agtgtagaag aaaaaaacaa acttattgcc gaatttatta cagctaaaaa acaacttgat
     3841 gttgccttgg ttgagctaaa taatagctct acaaaagggc ttagtgaact cttagatgat
     3901 gaagataaac aaaaactaga tctacttaaa aaaaatcttc aaaaccttca tagtaaaaac
     3961 aaagagtatg ctaaatttgt tcttattgtc aaagattttc ttgatggctt agtaaataaa
     4021 atgtttgata tcaatgatgg aacaaataat gcttatggag ataaaaagac aaatccagag
     4081 tcaattttca agatcaatgt ataaggattt ataatgggta tttttggaac attatacaca
     4141 ggtgttacag gcttaaaggc aagcgaagtt caaatcgcaa caactggaaa taatatctca
     4201 aatgctaatg caacttttta tacacgccaa agagtggtgc aaactacaaa tggatatatt
     4261 acaacaggtg gagttcaagt aggcacagga actgctgtag aaagtatagt gcgtttgcat
     4321 gatgagtatt cttactataa attaaaaggt gcatctactc aactagaata tactaaatat
     4381 atggcttcca ctttacaaga aattgcgcag cgttttcccg acttacaaaa tactggaatt
     4441 ttgcaagatt tagaaaatta taacaaagct tggaatgatt ttgcatctaa ccccaacgaa
     4501 aatgccacaa aaatagccct tgtaaaagct tctcagacct taacagaaag cgttaataac
     4561 acttttgcaa ccttagataa aatccaaaaa aaagtaaatg atgatattaa aaatacagtt
     4621 gatgaaatta atagaattgg cgaagaaatt gctactataa ataaacaaat ttatggacaa
     4681 gaagccttac caacagaaca cgcaaatgaa cttagggata gaagagatga acttgagctt
     4741 actctttcaa agctagttag tgcagttgca agcaaaaatg aaatcaatca agacaatcgc
     4801 cttgatacaa ccatcactga tccaggacat caatacaatc taagtataga aggttttagt
     4861 atagtagatg gaataaattt tcatccttta aagcttgatt atgatgataa aaataaatct
     4921 tatagcattt attatgaaac tcctgatgaa aaagttcgcg atcttactgc aaaaattagc
     4981 ggtggacagc ttggtgctca acttgactta cgcggtagaa actatagcaa aagcgaagga
     5041 aaatatgaag atggaattat ccaaggttat atggattctt tagatacttt tgctaagacc
     5101 atgatcaatg aaactaacaa tctttatgca agttctgcga aaagttctgt tacttctgat
     5161 tatctatctg ggcttaaggg agatattcct ttagttaatt acgacagaac catacaacca
     5221 ggaagttttg atatagtcat ttatgatgat aaaggcgata aaaaactcac caaaaccatc
     5281 accatagatg taaatacaac catgaatgat atcatgcgtc aaatcaatgc taatacagat
     5341 gataataaca ataaaaattc aaacgatgat gttgatgatc atatcaatgc aagttttagc
     5401 tacgatgcaa aaactggaga tggtttattt caaatcaatg caaaatcagg ttttaaggta
     5461 gccattgaag ataagggcac aaatttcgca ggtgcgttta gtataggtgg ttttttcagc
     5521 ggaactgatg caagtaatat gaaagtaaaa gattccatct taaatgatcc aagcacagta
     5581 agagcaagtt taagtggggt tgatagtgga aatgacatgg caaataaaat catccaactt
     5641 caatatgaaa aagttaattt ttataatgaa gatggcacta tcgataatct taccatggaa
     5701 gaatattacc gcaaacttac aggtaaaata gcctcagatg gtgaaaataa caatgtcgtc
     5761 aattcaagca atgaaactct ttataattct gtttatagcg agtaccaatc taaaagtggc
     5821 gtaaatacaa atgaagaatt agccgccctt atacaatatc aatcaagtta cggtgcagca
     5881 gcaaaaatcg tctcaaccgt agatcaaatg cttgatacct tactagggct taaatcttaa
     5941 gctctagtaa tatcaaatga aaaattttat ccatcttaaa gctaagctcg attttttagc
     6001 caatcaaaaa aataccaatc attccctttt tgaaactcca gatcctttgc aaattgctaa
     6061 aattcacaat gatgaattta ttgccttaat ttgtgcttta tttgcctatg gaaatgctaa
     6121 aaatatagta aattttctaa agaaacttga tttttcttta ttaaaccttc aagaaaaaca
     6181 aataaaaaaa gaacttaaaa atttaaaata ccgcttccaa aatgaaaaag atatacaaga
     6241 aatttttatc actctttcaa ggctgaaaaa tgaaatttca ctctacgaac ttttttatca
     6301 agcctatcaa gaaagagaaa ataccacaga tgccatctta gcttttatgc aaaaaatcaa
     6361 aaccttaaat tcatattcaa gttatggata tgattttttc tttggaaaaa tttggcaaaa
     6421 cactcctact tcacctctta aacgctataa tatgtatcta agatggatgg ttagaaaaga
     6481 tgaacttgat cttggacttt ttaccaaaat tcacaccaaa gatcttttaa ttccacttga
     6541 tacacatgca cataaaattt ccttgacttt aggacttcta aagcgtaaaa tatatgatta
     6601 taaaagtgtt ttagaactca cacaaaattt aaaaaaatta gatgcaaatg atcccataaa
     6661 atatgacttt gcactctatc gtttagggca aagtaaggaa attgacaaat ttaaggagtg
     6721 aagaatgggt tttgagcact taaatacgat ttattatttc atactttttt ttgtagctct
     6781 ttttgctggt tttatagatt ctattgtagg tggaggagga cttattactc taccagcact
     6841 catagcctgt ggaattcctg cgcatttatc cttagcaaca aacaaactcc aaagcgtctt
     6901 tggttctttt acggctactt taacttattt taaatccacc actctacctc atcttgcttg
     6961 gggtgttttt ttcacagcct taggagcagc tataggaagt tatagtgttc tttttgtaaa
     7021 agatgagcaa ttaaagctta ttatcttaat ctttttaact cttaccttct tatatacagc
     7081 cttacgtccc aacttaggca aacacgaaag cgaacctaaa ataaaaaata tcaaaatttt
     7141 tcatttaatt tgtggcttaa ctttaggatt ttatgatgga tttttaggac ctggaacggg
     7201 ttcattttgg atttttgctt gtgtgatgct actaggtttt aatatgagaa aagcgagcat
     7261 taatactaaa attttaaatt tcacaagcaa catcattgct cttgctatat ttttatggca
     7321 atatgaactt ttatgggctg taggtttgct tatgggtgta ggacaagttt taggagctta
     7381 tttgggttca aaacttgtgt taaaaactaa tggaaagttt ataaaaactt tatttttaat
     7441 cgttgtagga gctactatta ttaaagtagc ttgggattat tttagttaaa attgacccct
     7501 gagctaagct cccacatagg taaaaatata cctaaagcca aaaacagaac taaaagcgct
     7561 acaaataaag tcatcatagg ctctaaaaaa atcaaaaatc tatccatcaa attttcgctt
     7621 ttttgttgat aatatttggc aatttcttca cttaatactt caagtcttcc acttttcatc
     7681 gcaacactaa gcatagaaaa caccaaagaa tcaaaaatat caatcttttt aaaagcctga
     7741 cttaactcaa gaccagaatc tataaaacta aaaagttttt tatactgaaa aattaaaaat
     7801 ttattttcaa gccctataat agctaaatca aaagctttag atattgaaat tccatttttt
     7861 aaaagcaaag aaaaaaccat aaaaaaataa taattttgat tataaataat caaacgagaa
     7921 atcaaaggta cttttaaaaa taaaaaatcg caagaaaaag caaaagaatg aaaattttta
     7981 taagctaaaa taagcataac aataaaaata acaaacaaaa atatgcaaaa aattccatag
     8041 tcatctaaaa aattataaat ttctaacatt acatgcgtga taaaaggcaa actcgcgcct
     8101 aaattttcaa ataaatcttt aaaattaggc actacaaaaa gcattaaaaa caaaaatgct
     8161 ccgataatac ttaaaaaaac caaagtagga tatctaaaag ccttttttaa ttgtttttga
     8221 ctctctaagc ttttttctcg aagtttagaa atttgactaa acacttcact gatttttcct
     8281 gtcttttcag ccgttttaat caaagctaac tccgcacgat ttaatccaaa attagcattt
     8341 tcaaaagctt gatttagatt ttgggctaaa attaaattgt ctaatatttt tttcataatc
     8401 ttacaagagt gcataagata taattctcta atcgcttctt gaacacttaa cccaacttca
     8461 cacaacaaag ctagctcttt aaaaaagagt ataaaatttt catcttttaa tctctgaaaa
     8521 ttagattttt gaatttcttt tatatcaatg attttccaat tctttgataa ggcttttgct
     8581 tgtgctgtat ttaaattttc agcctttata gtttttgtat aattttgatt gtttttaaga
     8641 aattccactt cataaaattt catcttacaa cccttaaaag ctcatctata cttgtaagac
     8701 cttctttggc tttttttaaa ccttgttcaa acatagtttg aaagccatat ttttttgcaa
     8761 gctccattaa aatcgtttta tcttgatttt ccctaattgc acaagataaa tcttcattga
     8821 tctctaagca ctcagcgatt aattctctgc caaaaaatcc actatgatga caacgctcac
     8881 atccttttgg ttcaaaaaat tcaccttcaa attcaatata atgttttttg cttttttgct
     8941 tacaccaagg acaaagtttt ctaaccaaac gctgtgctat aacaagactc aaagccgatg
     9001 ctatcaagta actttttgct tgcatatcca aaagcctatc aatggtacta aaagcatcat
     9061 tagtatgcaa ggtgcttaaa agcaaatgac ctgttaaaga agctttaagt gcaatatcta
     9121 aactttcttc atcgcgaatt tctcctatca tgataatatc aggatcttgc cttaaaattg
     9181 ctcttaaaac actattaaac tcgactccaa cttttgaatt aagcaaaatt tgctgcacta
     9241 aaggaatttt atattctata ggatcttctg cggagataat ctttttttca atacttttca
     9301 actcatttaa acacgcgtat aaagttgtgc ttttaccact acctgtagga ccggttaata
     9361 aaatcattcc attgggacga tgtaaaatct tttttaaaat ttttaaattt ttatctccaa
     9421 gatttagttt atgcaaatcc aaaatttctt tatcatgttt taaaattctt ataacaacac
     9481 tttcgccata aatcaaaggc aaacatgaaa cacgaaaatc atatctttca ttttcaaaat
     9541 ctaattcaaa acttccatct tgcgtttttc ttgattcagc taaattcaaa caagctaaaa
     9601 atttgacatg aaaaaccaaa gcttcataaa tatccttctc aaaaatagca aattcacgca
     9661 aaattccatc aaccctaaac ctaatcaaag catcatcatt ccttgcttct atatgaatat
     9721 cactcgcatg aaaagataaa atttcatgta ataaaaaatc aaaaatttga ctgatgcaac
     9781 tttgatcatc tcttttgtga ttttcttgcc attcaagtct aagcttaatg cttaatcttt
     9841 taatctcctc ttgaatgcga atttgattta aaattttagc tatctttaat tcatcggcaa
     9901 ttgcagtgtc gattttttca caaatcataa aagtcttaac ttgctctaaa agctctaaag
     9961 aacaaggttt ggatctaata atcataaagc cgtcattgtt tttaataagc agaaatttaa
    10021 attttaaaag taaagaaaaa ggtatacctt cataaataaa atcattatct tcatctaaat
    10081 caacaaaatg caaattacaa aaatttgcta attttttaaa aaaatcccaa gaagtgatat
    10141 taaatttagt gcaaatttca tcaagactta tttcattatc aatataagct tgaaaaattt
    10201 tatccattct actttccatc taattccatt aaaccataat aatttatata agcatctaaa
    10261 gcactttgag cttctttttc ttcgcctaaa gctcttttag cctgagcaaa aatcagccaa
    10321 gaatcttgtt tttgcttgtc aagttcattg gcttttaaag cccaaaatat tgtcttttga
    10381 taagctttaa tatcaaaata cttcttagct aaatttaatg ccttttcata gcttggattt
    10441 tgataaaaag atttttttaa atcagaaata tttaaaattt tagaatcaat ttctatcttg
    10501 ctaatatgtg tattttcctg caccacttta acttcttcta gttctttata taacttttcc
    10561 ctagaaatct tatttttttc ttgtaaaatt tgcgcttgaa gaatcttttg ctccaaatgc
    10621 tttttatgtt caatagcttg caaataaata tttttttgct tattatattt t
//
LOCUS       DARGED010000049        10472 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.049, whole genome shotgun sequence.
ACCESSION   DARGED010000049 DARGED010000000
VERSION     DARGED010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10472
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.049"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..96)
                     /locus_tag="SFZ84_000987"
     CDS             complement(<1..96)
                     /locus_tag="SFZ84_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein"
                     /protein_id="HEG8203108.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNF"
     gene            complement(89..799)
                     /locus_tag="SFZ84_000988"
     CDS             complement(89..799)
                     /locus_tag="SFZ84_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8203109.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILEELKNTAALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(796..1590)
                     /locus_tag="SFZ84_000989"
     CDS             complement(796..1590)
                     /locus_tag="SFZ84_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8203110.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPCLTPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(1577..2521)
                     /locus_tag="SFZ84_000990"
     CDS             complement(1577..2521)
                     /locus_tag="SFZ84_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8203111.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGGNLQSKEFI
                     QRIEQNLGLDKSLLEQYKIWLFKALKGDLGVSFLSGESALKLIKERIFNTFILGFGAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(2521..4056)
                     /locus_tag="SFZ84_000991"
     CDS             complement(2521..4056)
                     /locus_tag="SFZ84_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8203112.1"
                     /translation="MLRWFVLLFLLFFNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVGKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKDPKNNSSIYVNFKDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLTYLDFALVYNNDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4166..6937)
                     /locus_tag="SFZ84_000992"
     CDS             complement(4166..6937)
                     /locus_tag="SFZ84_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEG8203113.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAN
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFVSSAEIMDYASLKAASNYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFN
                     PDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSHKRVCNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRINKINENVGLYIMCAARKLGLNENIIKLTKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEAI"
     gene            7090..7512
                     /gene="cgb"
                     /locus_tag="SFZ84_000993"
     CDS             7090..7512
                     /gene="cgb"
                     /locus_tag="SFZ84_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG8203114.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYIDIEKKLYDK"
     gene            complement(7532..9163)
                     /locus_tag="SFZ84_000994"
     CDS             complement(7532..9163)
                     /locus_tag="SFZ84_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG8203115.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(9213..10472)
                     /locus_tag="SFZ84_000995"
     CDS             complement(9213..10472)
                     /locus_tag="SFZ84_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203116.1"
                     /translation="MLGLSSLGGTLEFYDFIIFVFFAEYIANVFFPKDMGEFWALLNT
                     YGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLAFIPGYETLGFLA
                     PVLLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAMALGILLGSIVFL
                     IINAFFSIEEIATYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQMKKESSLSSFPLK
                     DLFKEKDIVKKLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGVEGSYLQILGILG
                     IALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLVLVCILYSIVCFL
                     GGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWLNTLASKNENPFL
                     YGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         4006 a         1851 c         1163 g         3452 t
ORIGIN      
        1 aaaattgaca ttatcaaaaa taatatgtct ttcttttttt aaataccaat gctttttaag
       61 ctcataaaac ttacttaaat tacaaacttt aagcattata ataccttaaa aactcatcta
      121 agctatataa atttgaacta tttttttcta gcataagaat ttcatctgct aaagaattta
      181 ccaaatttaa atcatgagtg atacaaacta aggctgcagt attttttaat tcttctaaaa
      241 tcgatatgat ctttgaagcg ttttctttat ccaaagaagc tgtgatttca tcacaaatta
      301 aaatttgggg ttgatttaat aatgccaaag ctaggctcac ccttcttgcc atacccaaac
      361 ttaattcatt agcataagaa tgccacaaac gatcaagatt ttcaaatcct aatttttgaa
      421 aataagaaaa agcgtaatct tttctttctt tttgttttaa ttttgtatga gtttttaaaa
      481 caagatgaca taaatttcca atatccaaat aaggataaag actaagctct gcatcttgca
      541 aaacaagtgc caccttagaa cgaaaatttc taagctcttc tttgttaaaa ttaaaaatac
      601 aagaattatg aaaacttaat tcatcaaaac ttattgtgaa attagaatct aaaagtctta
      661 ccaaagcttt tcccaacaaa cttttgccca ctccactttg tcctagtatc attaaagttt
      721 tgcctgtttt tatatctaaa ttaatatcct taagcaataa attattcttc aaactgatat
      781 ttaaatttct taccttcaag atcttatacc ccaaattttt tgtaaaaaat tacccaacca
      841 taaaagaggt aaaaacaaca aaagcaagct taaaagtgga aaaagtatca tccaccaagc
      901 acctataaaa actgcttttg aagactcact caaaagagta cctaaagttg gaatttcaaa
      961 tcctaaaccc agtccaaaaa aactcaaagt agcttctgtg gctatagcat gaacgatatt
     1021 aaatataaaa agtgtaaaaa tcagtgtttt taaagcaggt attaaatctt taaaaaaagc
     1081 tctaaattta gttcttccaa gcactatatt tgctttgtaa aaatctaaat tttcaagtct
     1141 ttttaattca ctttctataa ttcttgctat gaaacaccaa tgaattaaag cgattaaaaa
     1201 aatcatcaaa aatacatcag aagttatcat actttgaaaa aacatcataa gtaaaaaagc
     1261 aggcaaggct aaaaaaaact ctaaaatacg catccaaaaa acataaaaaa aacatcgtgc
     1321 taaaaacaaa taacacaaag caaagataat agacaataaa gatccaccaa cacctataat
     1381 caaagaattt ctcaaagcaa aaagcaaacg agaaaacaaa tccctgccta aaaaatcagt
     1441 ccctaaaata taagtaaaat taggagcttg atgcaaattt tctaaatgag tacttaaaat
     1501 atcaaaagga gtcaaacaag gtgcaaacaa ggcacataaa aataaaaaaa ttaaaggcgc
     1561 aagaatgata agaaatttaa acaaaatcaa gccttcttaa tctaggattt aaaatcctag
     1621 ctacaatatc acttaaaaat gtaaaaaatg ctgcaagcaa aacactaaaa aatataagtg
     1681 caagcacaac aggataatct ttaaaaataa tacttttaaa aagtaaagat ccaagcccct
     1741 cgtaagcaaa gacactttct accacataag ttcccatcat aaaacttaaa gcacttcccc
     1801 caaaataagc tacaatagga cttaaagaat atttcaaaac taaaaaataa atatctttct
     1861 cccttaaagc cctagcgtat aaattttgaa taaaaatttg agaaaaactt tcattgataa
     1921 aatttctagc aatccttaaa aataacgcca aatgtgataa aacgagcacc aaaacaggca
     1981 aaatcaaatg ctctaaacga tttaaaaaat catcttcaaa gcctatatca ctacttccca
     2041 taacaggtaa aattttccaa aaaattccaa aaatcaaaac aaacaataaa gccaaaacaa
     2101 aaggaggtaa agcaaaaaaa ttaaaagcta aaaaagtgat gattttatct ataaaacttt
     2161 ctttataata atatcccaaa agtgccaaaa aaacgctgag taaaaacaaa agcattaagg
     2221 caccaaaacc caaaataaaa gtattaaaaa ttctttcttt tataagcttt aaagcacttt
     2281 ctccacttaa aaaagaaact cctaaatctc cttttaaagc cttaaaaagc caaattttat
     2341 actgctctaa caaagactta tcaagcccta aattttgttc tattctttga ataaattctt
     2401 tactttgtaa attacctcca ttagcataag ctatactacc tttgctaaaa tgaagtaaaa
     2461 caaaacataa aaaagtgcta aaaaatgcta tgaaaatact aaaaactaag cgttttagca
     2521 ctatttactc cactcataaa cattccaagt aaaacccact ccgtgatgac ctaaagtcct
     2581 tgttttgata ccttttaaat cgttattata aaccaaagca aaatcaagat aggtcaagaa
     2641 aataaaaggt ggattttcat acaaagcatc tataaaatct ttataatatt tttttctctc
     2701 ttctaaattt gaagtatttc ttgctttttg caaggctata tccacttttt tatcatgata
     2761 atgtccaaaa ttccaaccct catcatttaa agcactatct tgcgaacttt caaataccct
     2821 aaaagtgtga aaatcaggat ctaaaggact tccccagcct attaaaaaac tatctacttt
     2881 agaataatca aaacttccag caggtttagc caccaccttg cttacaactc ctatttttct
     2941 aaattcgctt tgcaaaattc cagctaaact tacccttaaa ggatcattac tcatcgccca
     3001 aatttcaaat tctaaaattt tcccatcttt ttcaaaattt ccatctttat ttttcttaaa
     3061 acctgcactt acaagcaagt cctcggcttt tttaggatca tatttgtaaa ttttaaaatt
     3121 cttagaattt gcccaagaac gctctaaagg gtgattagct acaaaagcat aatcatgtaa
     3181 aagatttttt actatacttt ctttatcaac tgcgtaattt aaggcttgtc ttacttttaa
     3241 atcttttaaa aattcattat caaaattaaa cattaaagcc cgataatcgg ccgatttttc
     3301 acgtaaaatt ccaaaatttt catcattttt aaaaatattt agcagagaaa catcgattaa
     3361 agctgcgtct atcttgccat ttttaagctg agcactagct atagaaggat caaaaatgtg
     3421 ttttataata agtcttggag tttttacctt atcaagataa aaatgttcat tggctttaaa
     3481 ttcaacatat tcaccttttt tccattttac aaatttataa ggacctgtac ctataggatt
     3541 ttgattaaaa gagcttgtat ttaaattctc attttcaagc aaatgtttag gaagcatacc
     3601 tatgcttaaa gcatctaaaa atgcaggata aggcttaaaa agtgtgattt tcacatgaga
     3661 aggatttaaa atttccacac ttttaatgtc tttaaaattg acataaatag aagaattgtt
     3721 tttaggatct ttaaaggctt ctatactaaa tttcacatca tcagcactaa atttgactcc
     3781 atcatgccat aaaacatcat ctcttaaaaa aatatcataa acaagcccgt ctttaccaac
     3841 atcccaagac ttagccaaat caggttttaa actcatattt tcatcaaaac gcgtaagtcc
     3901 tgaaaataca agattaatca ctgcatcatg atcctcgcta taagcaggat ttatccttgc
     3961 gatttcattt tcaactgcta taataagtgt atcttttgga attttagcct caagattgaa
     4021 aaacaataaa aatagtaaaa caaaccatct aagcacttgt aactcctcaa atttaaaatt
     4081 ttaaagaatt ataaaataaa aaataagaag ccacaagctc tatgggggga taatttgctt
     4141 taaattatgg agttttattt atcaattaaa ttgcttcact gcattcatcc aataaatacg
     4201 ctatatgctg ccaagatata cccgtagcat cgcttaatcc tatctcgcaa gtgcttgatg
     4261 tactaaaccc gcgcttaata tttgttttgg cataaaattt tttaaagccc tttgtagcac
     4321 taatatttaa ttgaggcttg aaaaagccct tgtatccagc aaacccacaa caataggtat
     4381 cattatctat taatactttt ccattcgtac atagctttgt aagcttaatt atattttcat
     4441 ttaaaccaag ctttctagca gcacacatga tatataatcc tacattctca ttgattttat
     4501 taatgcgtaa cttgggagca ataaatttta ataaatactc gcttaaatca taaatttcat
     4561 actttgaatg atcactaatt aacttagcac tacaagcact atgatctaac actatgggtg
     4621 agtctatatt gcttaaaaag tcattgattt tttgtatatt tttatcttga atatcttgaa
     4681 aattctcata agccttacca caacataaat cattgggtgc ataaataatg cctatatttg
     4741 cttttttaca caagctttca aatacttctt gcaaacttct tttatcatgc attttttcat
     4801 ttggtttaaa gcttttatta agacagcttg taaaataaac cacattgcaa actcttttat
     4861 gactttttag ctcataatca ttcaccttag gcaaatacgc cctagttctt ggtataatgc
     4921 taagaaaatt gcttgctttt tcaagcttat tatcaagact taaattatca aatttatttg
     4981 cgatacttaa tgaaaattta gcaattttta gagttttttc atgattttta tatgctagat
     5041 ttcctaaaat tttagatata aatcctatat tattttttct atattttaat gaaaaatcag
     5101 caaaattaat ccccaaagga catgaaaaag agcacacccc acaagcagca caagagctgt
     5161 ctactaaatg attgtaatat tttttaatat cctttaattt tgcttttgac tcatcatcat
     5221 ttaagctttc aaggcgttta atctctcgta agatcgcaat tctttgtctt ggagtaattg
     5281 tatattcatt tgatggacaa aatctttcgc aaaatccaca ttccatacag gtatttaatt
     5341 tctcatcaat ccaactgact tgtttgatat ttttcttata aatatcttta tcatcgctaa
     5401 tgattacatc gggattaaat aaactatcct tatcaaagat acttttgatt tttttattga
     5461 tcaaataagc ttgcttaccc cactctacct ccacaaaagg tgccaccata cgccctgtgc
     5521 cgtgttcagc ttttatactt ccaccataag aagctactat attagacatt tctttaacta
     5581 gatttgaaaa attatcaaat tcaagcttat tgtttaaatc cggtgtgata ataaaatgga
     5641 tattgcctgc taatgcatgg ccaaaaatga ttccattatc accaaagcca tatttataaa
     5701 acaattcttg aatgctttta attccatcag ctaaatcctc gatattaaaa cacacatctt
     5761 cagtaattac cgttgaacct gcctttctaa gactagctgc tataggcaag agtgcttttc
     5821 taatcttcca ccataaatca tattcggcct tattcttgct aaaatatgac ttataagcca
     5881 gtttggaaat ttcttttatt ttatttatat tttcatcaag cttaagctca ttactatgct
     5941 cactttggat caatacacaa gtgttaccct ctttaatatc agctaaaata tctcttaact
     6001 catcataatt tgatgcagct tttaaacttg catagtccat tatttcagca gaacttacaa
     6061 aatcaacttt agcaaattct tttatagtgt ttgcagcatt attgatatta tcaaaaaaca
     6121 ataaagcaca ggccttaaat tccaaatcat ccaaaacagc aagcttaact tcgcttacaa
     6181 atcccaaagt tccttcagag ccaataagca agtgtgctaa aatatctatt tcatcatcat
     6241 aatcaacaaa ggcattaagg ctataacctg tagtgttttt gattttaaat tttttgatta
     6301 ttaaatcttt taattcttta ttggcattaa tctcttcttt gatctctcta agttcattaa
     6361 ttaatttttt attttcatct ttaaatcgag ccacacttaa agcatcgctg gtatcaagca
     6421 tactaccatt tgccaaaatc accctaatac ttcttaaggt tttatagcta ttatccttag
     6481 ttccacagca cattccgctt gaattgttat ttataatccc tccaattaaa gctgaattta
     6541 tagtagctgg atcaggtcct atttttttct tcaaaaaagc aagactttca ttagcatgaa
     6601 tgcctactac accgcatcct aaagtaattt cgttagcgtc tttgttaatt tttatttttt
     6661 taaaggcaaa tttaatcact acaagtactc catcacaaga gctttgtcca cttaaacttg
     6721 tacctgctgc tctaaatgtt ataggagttt tataagtatt tgctaattga ataatttgct
     6781 taatttcatc ttcattttta gcaataatca ctatttttgg aatataaaaa taacacgacg
     6841 catcaatgcc ataagcatag catctagcat aatcattaaa aattctatcc ttaaaaatat
     6901 acttagcctc attataaaaa gctttaaaat ttgccatagt ccctcttttt aatttattat
     6961 caattatata atttaataat ttaaagataa ttttaaattt atatttttga gcataatttt
     7021 aacacaagtc aatttttttc tcctttttaa gatataaaat atctctttta caacaaaaaa
     7081 ggagaaacta tgacaaaaga acaaattcaa atcatcaaag attgtgtgcc tattttgcaa
     7141 aaaaatggag aggatttaac caatgagttt tataaaataa tgtttaatga ttatcctgag
     7201 gtaaaaccta tgtttaatat ggaaaaacaa atttcaggag aacaaccaaa agctttagcg
     7261 atggcgattt taatggcagc caaaaatata gaaaatttgg aaaatatgag aagctttgtt
     7321 gataaagttg ccataactca tgttaattta ggagttaaag aagagcatta tcctatagtt
     7381 ggagcttgcc ttttaaaggc tattaaaaat cttttaaatc ctgatgaagc cactcttaaa
     7441 gcttgggaag ttgcttatgg aaaaattgct gaattttata tcgatataga aaaaaagctc
     7501 tatgataaat aatataagcc cattttgggc tttaatcaaa tttttctact aaatttttag
     7561 ctaattcctt tatattctca ccctttaatt cgctgatttc accattttga gccaagaaaa
     7621 ttctatcagc actatcaaaa tatgcatcat catgtgtgat agcaaagatt gttttacctt
     7681 gctcttttag caaaggtaaa agttttttat aaaaaaatct tctaaaaaca ggatcttgat
     7741 cagccgccca ttcatcaagc actaaaatat ccctttcttc aagcaaggct ataagcatag
     7801 ctaaacgctt tttttgccct gtagaaagtt tagttaaggt cagttcatta tctttgacac
     7861 ttgttttatt tttaagttct aaaaactcca accaaaaagc aattttttct tcgcttgcaa
     7921 aattttcttt atttaaggtt ttagtaaaaa gatgaaaatc gctaaaaaca gcagaaataa
     7981 gagatctata ctcatctaaa tttttatcat ctataagcgt atcatcaaca taaattccgc
     8041 ctttgcttgg cttaaaaagt cctgtcaaaa gcatacaaaa agtggattta ccacttccat
     8101 ttttacctat taaaaatacc aattcacctt ttttaagttc tatatttaca ggatttaagt
     8161 gaaaattttc ttcataagca aattgagtat ttctaaaaga aatttttttc cattcgctaa
     8221 tataatgtgt ttttttaaaa ccttctatat aatcatctaa ttccaatttt gcgatcttat
     8281 ccaaagcaat ttttgccaaa agcaaagtag gaaaagatcc tatcatagat actaaagggg
     8341 ttcgtaaaaa caaaatagaa agagctatag ttgtagcatc tgcaacactt gcccattcaa
     8401 attttaaagc taagtaaaac tctacaccca ctaaagccaa aagagttaca tttgtccagt
     8461 tgtttgagag attgttaaaa agattgccta aagtactatt tttctttttc aatcttgcat
     8521 tattttcaaa ttcatcttca tagtaaagtt tggctctatc acgattgatc aaaagttctt
     8581 tatgtccatc tagtatattt tggtaattat tttgcaaagc atcatcattt tcccttgcct
     8641 ttctaaaata ctgatatact ttcatcatca aaaaattatt agtaataaaa ataaccataa
     8701 tccataccac acacaaagca aaaatttgtg gtgaaagata acataaataa acactagtgc
     8761 ataaaatcaa tatacttgat tgtaaaaaat caggcaatct taaaagccca aaagatatat
     8821 ttctcacatc acttcctaaa gaagctaaaa ttctagcctt acctacttta gccactctta
     8881 acaaaggggt atctaatatc tgctttacta cacgcctttg cattttaaaa ataaaatttt
     8941 gtccaaaaat actaagtcca agttcaacta tggtagaact tataaaaaat atcaaaagca
     9001 aaacaataaa ataaaaaata ggaatgtttt gtgcattttt aagcaaataa tcattgataa
     9061 aaacaagagt taaaactcca acagcacttg taataaaaga aaaaagcaaa aaagaaatca
     9121 actttaattt attttgttta agtaattcca taataaaagg catttataaa ctccaaaata
     9181 taattttaat tataacattt taagagtgat tatcaaaatt ttattttatc ttttactata
     9241 aaaacagcac aaatagccaa taacgctaaa aaaatcatat atatactcat accatataaa
     9301 aatggatttt catttttact cgcgagtgta ttaagccaaa aaacgagttg cggagtaata
     9361 ccgcctgaaa ttgcataagc aatattataa gaaaaagaaa ttcctgaaaa tcttatttta
     9421 gctctaaaaa cttcactcat taaaataggt gcaaacacat taattccacc taaaaaacaa
     9481 acaatcgaat acaaaataca caccaaaacc aaatttttaa gctcatataa agcataaaaa
     9541 tataaaaaag aaaaaaatac aaaagttaaa gaaaagaaaa tgcaaatttt aaataaacca
     9601 aatttatcta caagataacc cataaaagcc ccgcctaaag ctattcccaa aattcctaat
     9661 atctgtaaat aacttccttc aaccccactt aaatttaaaa tactaggcat aaatttaggc
     9721 attaataaaa caagcacaat aacacaacct gttaaaaccc aagtcatcat cattgatgaa
     9781 aataattttt ttacaatatc cttttcttta aataaatctt taagcggaaa agaactaagc
     9841 gatgattctt ttttcatttg tttaaaaaca ggagtttctt gcaaaaatct acgcaaataa
     9901 atagaaataa tcccaaaaat tccacctaca aaaaaagcaa tacgccatgc ataagtagca
     9961 atttcttcta tactaaaaaa agcattaatg attaaaaata ctatacttcc taacaaaatt
    10021 cctaaagcca tagctgaatt taaacagctt aaaaagaaag ctttttgttt ttcttgacaa
    10081 tgttctctta caaaaaccca agctccaggc aattctccac ctatagctat gccttgaaaa
    10141 attcttataa gtatcaataa aacaggagct aaaaacccaa gagtttcata acctggaata
    10201 aaagctaaga caaaggtagg aagaaccatt agtaaaatac ttagcataaa catattttta
    10261 cgcccaaatt tatctccaaa atgtgccata actataccac ctaaaggacg tgctaaatat
    10321 ccagctgcaa atgctccata agtatttaat aaagcccaaa attcacccat atctttagga
    10381 aaaaatacat tggctatata ttcagcaaaa aagacaaaaa taataaaatc ataaaattct
    10441 aaagttcctc ctagtgaaga aagtcctaag at
//
LOCUS       DARGED010000050        10443 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.050, whole genome shotgun sequence.
ACCESSION   DARGED010000050 DARGED010000000
VERSION     DARGED010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.050"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..843)
                     /locus_tag="SFZ84_000996"
                     /pseudo
     CDS             complement(1..843)
                     /locus_tag="SFZ84_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
     gene            complement(853..1023)
                     /gene="kdpF"
                     /locus_tag="SFZ84_000997"
     CDS             complement(853..1023)
                     /gene="kdpF"
                     /locus_tag="SFZ84_000997"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HEG8203117.1"
                     /translation="MLWILSLLLLLAFGSLCFFIRFCEIQTKDTRMIFLLVLSLILAL
                     YLFYALLYPEKF"
     gene            complement(1178..2602)
                     /locus_tag="SFZ84_000998"
     CDS             complement(1178..2602)
                     /locus_tag="SFZ84_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8203118.1"
                     /translation="MDFLTSLSEAGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(2766..4016)
                     /locus_tag="SFZ84_000999"
     CDS             complement(2766..4016)
                     /locus_tag="SFZ84_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG8203119.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDLFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTSK
                     SQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(4016..4744)
                     /gene="lptB"
                     /locus_tag="SFZ84_001000"
     CDS             complement(4016..4744)
                     /gene="lptB"
                     /locus_tag="SFZ84_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG8203120.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(4737..5144)
                     /gene="tsaE"
                     /locus_tag="SFZ84_001001"
     CDS             complement(4737..5144)
                     /gene="tsaE"
                     /locus_tag="SFZ84_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG8203121.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDVRVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(5141..5386)
                     /locus_tag="SFZ84_001002"
     CDS             complement(5141..5386)
                     /locus_tag="SFZ84_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG8203122.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVD
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            5542..6762
                     /locus_tag="SFZ84_001003"
     CDS             5542..6762
                     /locus_tag="SFZ84_001003"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG8203123.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFSPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            6775..7218
                     /locus_tag="SFZ84_001004"
     CDS             6775..7218
                     /locus_tag="SFZ84_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG8203124.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIVNLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            7218..7760
                     /gene="hslV"
                     /locus_tag="SFZ84_001005"
     CDS             7218..7760
                     /gene="hslV"
                     /locus_tag="SFZ84_001005"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG8203125.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            7757..9076
                     /gene="hslU"
                     /locus_tag="SFZ84_001006"
     CDS             7757..9076
                     /gene="hslU"
                     /locus_tag="SFZ84_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG8203126.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            9073..9948
                     /gene="era"
                     /locus_tag="SFZ84_001007"
     CDS             9073..9948
                     /gene="era"
                     /locus_tag="SFZ84_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG8203127.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            9935..>10443
                     /locus_tag="SFZ84_001008"
     CDS             9935..>10443
                     /locus_tag="SFZ84_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203128.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPGNMDLFFKQNRFTELLKHYESKLLLYQDLNTIK
                     HYFSSQIKC"
BASE COUNT         3929 a         1760 c         1565 g         3189 t
ORIGIN      
        1 cataagagca aaaccttgta tttcttttct atgataaacc atcaatccaa aagctacaac
       61 acaggcacta ggaataagca tcatggataa aatttgcaaa aaatttgtaa gtaaagtagg
      121 attttcaaaa ggcatgcttg aattagtacc aaaaaaacca cccccatttg tccctaaatg
      181 ttttatagac tcaagagctg caacaggacc tgtggcaatg ctttgaaatt tattttctaa
      241 agtaagcacg ctaaaatttg cgtgataatt ttacaccacg ccttcagaga taaaaattac
      301 agccaaaata aaacttaaag gcaacatcaa acgcgtaata atacgcgtaa aatcttcata
      361 aaaatttccc atttgcatac tacataaagc acgacaaaaa gccatacaag cagaatatcc
      421 actcgcactt gaaacaaaca tagcaagcaa aatgcctgta ttttgcgaaa gcaaacttaa
      481 agcattctct ccactataat gctgaaggtt tgtatttgta ataaaactaa ttacagtatt
      541 taaattcaaa tccccttatc atagaattta tcgaattggg atttaaaaaa gtttatcttg
      601 taaataaaaa atcacgaaag aaaaaatagc cactaaggca ttaaaagcaa ttaaatgcaa
      661 agaatatttt tgccaagtca tattttttct atcaattgca caaattttat aaattaagtt
      721 atcaattgga ttaaaaataa aatcaaaaat agttttttta cagcttgcaa ttttataaag
      781 ataatttcca aaaattaaag ccaatataaa agctataatc agtgttatta aaatttctag
      841 catatttttc ctttaaaatt tttcaggata taatagagca taaaataaat aaagagcaag
      901 tattaagctt aaaactagta aaaatatcat ccgcgtgtcc ttagtttgaa tttcacaaaa
      961 acggataaaa aaacataaac taccaaaagc taaaagtaga agcaaagata atatccatag
     1021 gatagccttt tctcattgat tcaaaatagg atttattcta tccttgttaa gcttatattt
     1081 tgattaatac taattttatg atttatttat aatttttatc tatattaaat aaaaagacaa
     1141 atgaagaatt tagcaggaaa aatcctgcta aaaattgtta aagataacct gctgccatag
     1201 caataaaata tcctgctata caagaagtga ttacacctat aagacctggt aaaataaaac
     1261 tatgattgat aacaaattta ccgatgtgag tagtacctga tctatcaaat tgtatagtag
     1321 ccaaatcgct tggataagtt ggtaaaatat aatacccata acaagcagcc gcaaaagcaa
     1381 caattacacc aggttcaaca ccaattccta aagccaaagg aacaaaagct gaaatagccg
     1441 ctgcttgaga gtttacaaat tttgaaatta aaagaagcat tacagcataa gtccaaggat
     1501 gctcttttac tatatctcca agcgctgctt tcatcatagg agtgtgaact gcaaacatag
     1561 tatcagccat ccaagaaatt ccaaaaaccg caacaagtgc tatcatacct gatttaaaaa
     1621 tttcattaga gccgattttc tttgcatctg ttttagtaaa gatgataatc aaagaacctg
     1681 ctaaaagcat aaacatctga ataactgaaa ccatggataa aacatccatt ttaggattgc
     1741 ctaaagcatc tacttgagga atgccatttt ttacaacttg cccccagttt ggacgcaaga
     1801 aatcaaatac acctaataaa gctactaaag caatagctcc taagaaaatc cacattgcaa
     1861 cccaattgct ttttggaagt ttaacaccta aaagtgtttt agaatcccca taaacatatt
     1921 ttttaaattc aggatcttta agtttttctt gaaatacttc atctttatcc aaatcttttc
     1981 ctctaaacca agaaaaaatt cctatacaca atacaccaaa taatgtacta ggtatagtaa
     2041 tttgaagaag attaatataa ccatcaaaac ctgctaattt atgattagca tttaaaagca
     2101 aagcagtcaa actcacaaca gccacagata caggagatgc aataataccc atttgtgatg
     2161 atatagaagc tgccgccatt ggacgctcag gacgaatacc gtttttaatc gctatatcat
     2221 aaataatagg cataatagta taaaccacat gtcctgttcc acaaagtata gtcaaaaagc
     2281 aggttacaaa aggtgctaat attgtcaaaa acttaggatt gcgtcttaaa attctttctg
     2341 ctatttgaag cataacatcc aaaccaccac ttgcttgcaa agttgcactc gcaaccacta
     2401 ccgctaaaat cgtaagcata acatctatgg ctggttttcc aggctttata tgaaaagcaa
     2461 atacaagcat taaaatacct ataccaccaa gtaaaccaag cgctatgccg cctttttttg
     2521 caccgtaaaa aagacaaatt aaaacgataa tgatttggat tgcaaattgc cctgcctcac
     2581 taaggcttgt taaaaagtcc attttaactc ctttgaaaat taatatttaa aaacagttat
     2641 tattgtatca catttttaaa ttaaagaata atatttctaa aaataaaaca ataatttttt
     2701 atattattta aattaaattt aaatataaaa caaaagtgta atgggtttga tagattgata
     2761 gaattttatc cttcaagttc atataatttt tttctatctg tagaacttgc tatattaaga
     2821 tgtttgcgat attttgtaat agttcttcgc cctatatcga ctttaaattc ttctttgatt
     2881 aattctaaaa ttttactatc gcttaaaggt ttatttcgat cttcattctt tactaaattt
     2941 gctacaaatt ctttaacacc tacatttgaa gtctctccct cttcatcaag agcaaaagca
     3001 aaaaaatcac gcaagggaat aagtcctctt tcacaactta aatatttatt tgccacagct
     3061 cttgatatag tcgaagcatt gcgttctaaa tcaagtgcta aatccttaaa agtcataggt
     3121 tttatctctt ttcccatgaa aaaatcatat tgatattcta ctatcataag ccctatttta
     3181 taaagagtag cttttctcat cgctaaagca tcaactaaat tttttgcttc tttgatgtaa
     3241 tgacttaaaa aatcatgctc taaaccatca gtttggattg aaatttcagg ataataatca
     3301 tcattgattt ttactttaat ttcaccattt tctttataaa caaaaatatc aggaacaatt
     3361 atacgagaat cttcaaaata ttccaaaaaa ggaggagtgc taaaacgctt aagtacagcc
     3421 aatgcttctt tatataaagg ctctttggta tagttttgta tattttcaaa atccataatc
     3481 aacattctac aaaactcatc aatatcttca tctaactcca tattttcaag agcaaataaa
     3541 aatgcttctt tataatcttt agctcccact cctacaggat ctaaaaattt aaatcttgct
     3601 cttactcgct caatttcttc caaagaatac tcttttaaaa attcttcatc gtgttcaaaa
     3661 tatccttcct catttaagca ttctataatt ttttttgcaa gttcttgaga tttgcttgta
     3721 ggaaacaaag gaggaagaat ctgttcattt aaaagctcat aaacactttt tttggcaagt
     3781 cctttactat ccacaaaagc cgaatttaca ttatgtttat aaaataaatc aaaataattc
     3841 ttacccttat catgagtttg tatcgaatct tgaacattta agaaaggatt atcctcagca
     3901 aatttatcta aattttcttt taaatcctct atatttgctt gtaaaatcgg caaccaagag
     3961 cgtaaagttt gagaaatttt agtcttaggt gcttgggtga ttttttgctt taacatcaat
     4021 caaggagttt aaactccgct cctaaataat actttttcac gtctttattg gttgcaattt
     4081 catcagcatt cccactagca agcaaagagc ccgatcttat aacataagct ctatcacaaa
     4141 tagctaaagt ctcacgcaca ttatgatcgg taattaaaac cccaatcccc aatcttttaa
     4201 gctctttaat taaagtttga atttcagcca ctgctatagg atcaacacct gcaaaaggct
     4261 catcaagaag caaaaactta ggttcacaca tcaagcttct agcgatctca caacgccttc
     4321 tttcacctcc acttaaactt aaacctttcc ttaaacgaat aggctctata cttaaaagtt
     4381 caagcatttg ctcaacttta tcatgtaaaa tttttttatc tttataaaaa atctgagccg
     4441 ctaaaagcag gttatcttct acgcttaaat ccttaaaaat actactttct tgaggtaaat
     4501 aacctatccc tgatctagct cttttattta aaggatcttt tgtcacatct aaaccgtcta
     4561 aaagaacttt tccactactt ggggaaataa gtccacatat catataaaaa gttgttgttt
     4621 ttcctgcacc atttggccct aaaagcccca caacttctcc gctattaacc tccaaagaaa
     4681 ttccatgtat aatcttagtt tttttaataa ttttttctaa atttacaatt tctaatttac
     4741 tcataaattt catactttct tttgtcatct ttaatgctaa ttttaatctg gatagtagaa
     4801 attccaaatt tcattaaagt ttttttcaaa ttttcaccgc cccattcaac caaatgcaaa
     4861 cctttttcaa aaaaattttc aaataaacca ttcgctaaaa gtccttctaa accttcttga
     4921 taaatatcat aatgataaat gcaaatatca tgattttcat atttttgcat agtggaaaaa
     4981 gttggagaat ctacccttac atcaagacca agaaatttaa cccaagcttg caccaagctt
     5041 gtttttccgc tagccaaatc tccttgaagc aaaacaacac cttctttagg cattatttga
     5101 agcatcgttt tgatctcatt ttttgctaaa ataaattctt tcataatttt accacatatt
     5161 cattttgtgc gtttttagga atgcttttcg tactaggtag agctagcact ttatattttt
     5221 gagtgtattc agtaaaatgt aaagtgataa tatcatctac cttaacctct ttactcgcct
     5281 taacaataac gccattaatc cccactacac cacttttaca catatcttca gaaatagctc
     5341 ttcttttcgt gatattaact acatttaaaa atttatctac tctcataaaa gcaattttag
     5401 caaaaaaaat caatttttgg aacaaaattt gcttacgcct ttgctttatt tttttaagaa
     5461 aatagcaagt aaaaactttt ctttaatgaa atttggatac aattttataa ttttcaaatc
     5521 tattttaaca aaggatatct tatgaaaaat gaagtaaaaa aagtagtttt agcgtattct
     5581 ggagggcttg atacgagcat tattttaaaa tggcttcaag atgagtataa ttgtgaagtt
     5641 gtaactttta cagcagatat tggtcaaggc gaagaactcg aacctgcgag aaaaaaagcc
     5701 ctttctttag gcataaaaga agaaaatatt ttcattaaag atttaagaga tgaatttgtt
     5761 aaagattatg tatttcctat gtttagagcc aatgcaattt atgaaggaga gtatctttta
     5821 ggaacaagta tagcaagacc actcatagca aaaactcaag cacaaattgc cctgcaaaca
     5881 ggtgctgatg cggtaagtca tggcgccaca ggcaaaggaa atgatcaagt gcgttttgaa
     5941 cttggttatc ttgcttttag tcccgattta aaaatcatcg ctccatggcg tgagtgggat
     6001 ttaaacagtc gtgaaaaact ccttgcttat gcgcaaaaac atggcattga tatttctaag
     6061 aaaaaaggaa aatcccctta ttctatggac gcaaatttac ttcatatttc ttacgaagga
     6121 cttgttttag aagatcctgc acacgcacct gaagaagata tgtggagatg gagtaaaagc
     6181 ccaaaagacg ctccaaatga aagtgaaatt atagaacttg atttccaaaa aggagattta
     6241 gtagcgataa atggagaaaa actaagtcct gcaggacttt taaccaaact taacgaacta
     6301 ggctgcaaac acggtatagg acgccttgat atagtagaaa atcgctatgt aggcatgaaa
     6361 agccgtggtt gttacgaaac tccaggcggt actatacttt taaaagcaca tagagcgctt
     6421 gaaagcatca cgcttgatag agaagcagca cacttaaaag atgaactcat gccaaaatac
     6481 gcgagtttaa tttataatgg ctattggttc tcgcctgaaa gaatgatgct tcaagcctta
     6541 atcgatgagt ctcaaattca cgccaatggc agagtaaagc tcgagcttta taaaggcaat
     6601 gtgatggtta taggacgcga aagtgcgaac gatagcttgt ttaacgcagc ttattgtact
     6661 tttgaagaag atgaagtgta taatcaaaaa gacgcagcag gctttatcaa gcttaatgct
     6721 ttgcgtttta tcatcgcagg aaaaaatgga agaaaatttt aataaaggaa taaaatgaaa
     6781 gtattattaa tcaaagatgt aaaagcactt ggaaaagcag gagaaataaa agaagtaaaa
     6841 gacggctacg gacaaaattt cttaatcgct aaaggctttg ctaaagcagc tactaatgaa
     6901 gttttaagaa aatatgaaag cgacaagaaa aaagaggctg aaaatttacg ctttgaaatc
     6961 gtaaatttag aaaaactcaa agaagaactt agcaaaatca ctcttgaaat ttcaaaaccc
     7021 gtaggtgcaa atggaagttt gtttggtggc gtaaccaaag atgaaatcgc tcacgcccta
     7081 aaagaacaaa gccatataga aatcgataaa aaaagtttgg aatgcgatac cttaaaaagc
     7141 ttaggaatcc acgaagtaag cgtaaaactt ggacacgcaa tccatgctaa atttaacata
     7201 aatataaagg cagaataatg tttcacgcaa caacgatttt agcttacaaa ggtaaaaata
     7261 aatccgtaat tggcggagat ggacaagtaa gctttggaaa tacggtgcta aaaggcaatg
     7321 ctgtaaagat tagaaaactc aacaatggca aagttttagc aggttttgca ggatcaacag
     7381 ctgatgcttt taatcttttt gatatgtttg aaaatctcct tcaaagttct aaaggcgatc
     7441 ttttaaaagc agcgattgac ttttctaaag aatggagaaa agacaaatac ctaagaaaac
     7501 ttgaagccat gatgctcgta cttgatagaa atcacatttt tctactttct ggtacaggcg
     7561 atgtggtcga acctgaagat gggcaaatcg cagctatagg aagtggtgga aactatgcgc
     7621 tttcagctgc tagagcctta gcaaaacata ccgatttaga tgaagaagaa cttgtaaaat
     7681 caagtcttca aatcgcaggt gaaatttgca tttataccaa taccaatatc aaaacttatg
     7741 taatcgagga tgagaaatga atctaactcc aaaagaaatc gttaaatttt tagatgatta
     7801 tgttatagga caaaaaaaag ctaaaaaaat catagctata gctttaagaa atcgctaccg
     7861 cagaatgcaa cttagccctg agttgcaaga tgatatagtg ccaaaaaata tcttgatgat
     7921 aggttctaca ggtgtaggaa aaacagaaat cgctaggcgt ttagctaaaa tgatgggctt
     7981 tcctttcatc aaaatcgagg cgagtaaata tactgaagta ggttttgtag gtcgtgatgt
     8041 agaaagcatg gtaagagatc ttgctaatgc ggctttaaat ttagtaaaaa acgaacaaag
     8101 agaaaaaaac aaagataaaa tcgatgaatt tatagaaaat aaaattttag aaaaactttt
     8161 gccaccttta ccaaagggta tcagcgatga aaaacaagaa gaatataaaa acagtcttga
     8221 aaaaatgaga actaaactaa gaaatggcga tcttgatgaa agcaccatag agatagaaat
     8281 ttcacaaaat atgttcgata ccaatcctaa cctacctcct gaaatgggtg caatgcaaga
     8341 tatagttaag gttataggcg ttggcagtaa aaaagtcaaa aaagaaatga aaatcaaaga
     8401 cgctaaaaat gctttaaaaa atgaagcagg agaaaaaatc ctagaccaag aaagcatcaa
     8461 aagcgaagcc ttaaaaagag cggaaaatga aggtattatt tttattgatg aaatcgataa
     8521 aatcgctgtt tcaagcggaa attcaaaccg ccaagatcca agtaaagaag gggtgcaaag
     8581 agacttactt cctatagtcg agggatcaaa tgtacaaaca aaaataggta ctttaaaaac
     8641 cgatcatatt ctttttatcg ctgcaggggc ttttcatctt agcaaaccaa gtgatcttat
     8701 ccctgaactt cagggacgct ttcctttaag agtggaatta gatagtcttg atgataaagc
     8761 tctttatgaa attttaacac gccctaaaaa ttcactttta aaacaatact ctcagctttt
     8821 aaaaactgaa aatttagaac ttgaatttaa tgatgaagct attaaagaaa tagcaaaaat
     8881 agcttcaaga gccaatgaag aaatgcaaga tataggtgct agacgcttac atactgtaat
     8941 agaaaaatta cttgaagatc taagctttga agctgatgag tatgcgggta aaaaattcgt
     9001 agtggataaa aaaatggtag aagaaaaact cggagatatc atagaaaata aagatcttgc
     9061 aaggtatatt ttgtgaaaag tggctttgtt agtatcatag ggcgtactaa tgcaggaaaa
     9121 agtactttaa tcaattcctt attagaagaa aaaatcgccc tagtttctca caaacaaaac
     9181 gccacaaggc gtaaaatcaa agccatagtg atgcatgaaa aaaatcaaat cattttcatc
     9241 gataccccag gacttcacga aagcggtgct acgcttaatc aactgcttgt ccaaagtgct
     9301 attaaatcca tgggagattg tgatgtgatt ttatttgtgg caagtgtttt tgatagtaca
     9361 aaagactatg aaaatttcct tagtctaaac ccacaagtac cacatatcat cgctttaaat
     9421 aaagtagatt taaccgacaa tgctacgctt ttaaaaaaac ttagcgaata tgcaaaattt
     9481 agccaacatt ttaaggctat cattccttat tcttctaaga aaaaaagcta taaaaaaggc
     9541 ttgttagatg agatagtaaa ataccttgat gaacatgagt atttttatga tcctgaattt
     9601 ttaagtgcga gtagcgaaaa agaactttat agagatttca tacttgaaag tatttatgaa
     9661 aatttaagcg atgagcttcc ttatagtagc gaagtgctta tcaatcgcac caaagacaca
     9721 cctaatcttt taatcctaga agccaatatc atcacagata caaactctca caagggtatg
     9781 cttataggaa aagaaggggc aactttaaaa agaataggca aagatgcacg ctttaaaatt
     9841 tcaaaacttg cacaaaaaaa agtactttta aagcttttcg taacagtgaa aaaaaactgg
     9901 caaaaagatg aagaattttt aaaaaaactt ttaaatgatg aaaattaatt cattaaataa
     9961 aataaatttt ataaaatcta cagatttgct ttatgctcaa agaacaggaa tatccaaaga
    10021 agacgaactt tttaacaatt taaccgcaga ttttaagcta agcaaaccct ttgactatca
    10081 aatagctttt tttaaacata atgaaattta tcattgtttt ttagcgcctg tttacaaatt
    10141 gaaaaaaagt cgtttttgct ttcctgagcc tttaattttt caagctttgt ttgatgaaag
    10201 atttattgag gaaagtgatt attgtgtttt aaatttatat gatcaaactt tatatttata
    10261 tttttaccaa gaaggaaaat ttatcaatct taaaaaaatc gaaaatttca atccaggtaa
    10321 tatggattta ttttttaaac aaaatcgatt tacagaactt ttaaaacact atgaaagcaa
    10381 attgctactt tatcaggatt tgaatacaat caaacattac ttctcatctc aaataaaatg
    10441 ttt
//
LOCUS       DARGED010000051        10434 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.051, whole genome shotgun sequence.
ACCESSION   DARGED010000051 DARGED010000000
VERSION     DARGED010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10434
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.051"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..486)
                     /locus_tag="SFZ84_001009"
     CDS             complement(<1..486)
                     /locus_tag="SFZ84_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8203129.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFII
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSAYKYFQEEDIEN
                     IKNLLNQFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDHNFKLNFTSTFIPPNRD
                     YQ"
     gene            547..2055
                     /locus_tag="SFZ84_001010"
     CDS             547..2055
                     /locus_tag="SFZ84_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG8203130.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFVKERKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQVFTQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            2095..2322
                     /locus_tag="SFZ84_001011"
     CDS             2095..2322
                     /locus_tag="SFZ84_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8203131.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(2319..3389)
                     /locus_tag="SFZ84_001012"
     CDS             complement(2319..3389)
                     /locus_tag="SFZ84_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8203132.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHTLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(3411..4625)
                     /locus_tag="SFZ84_001013"
     CDS             complement(3411..4625)
                     /locus_tag="SFZ84_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8203133.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDLKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGVMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIR
                     AVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDE
                     NDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFK
                     DLEDKFELEMIN"
     gene            4704..5402
                     /gene="pseF"
                     /locus_tag="SFZ84_001014"
     CDS             4704..5402
                     /gene="pseF"
                     /locus_tag="SFZ84_001014"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG8203134.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATGFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            5386..6210
                     /gene="pseG"
                     /locus_tag="SFZ84_001015"
     CDS             5386..6210
                     /gene="pseG"
                     /locus_tag="SFZ84_001015"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG8203135.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            6207..6680
                     /gene="pseH"
                     /locus_tag="SFZ84_001016"
     CDS             6207..6680
                     /gene="pseH"
                     /locus_tag="SFZ84_001016"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG8203136.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(6645..7391)
                     /gene="hisF"
                     /locus_tag="SFZ84_001017"
     CDS             complement(6645..7391)
                     /gene="hisF"
                     /locus_tag="SFZ84_001017"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8203137.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGKAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(7392..7997)
                     /gene="hisH"
                     /locus_tag="SFZ84_001018"
     CDS             complement(7392..7997)
                     /gene="hisH"
                     /locus_tag="SFZ84_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8203138.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKEFGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            complement(7994..9130)
                     /gene="pseA"
                     /locus_tag="SFZ84_001019"
     CDS             complement(7994..9130)
                     /gene="pseA"
                     /locus_tag="SFZ84_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEG8203139.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            9390..10421
                     /gene="pseI"
                     /locus_tag="SFZ84_001020"
     CDS             9390..10421
                     /gene="pseI"
                     /locus_tag="SFZ84_001020"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG8203140.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQTESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEIFSEENVKSVRPSFGLHPKFYQELLGKKATKDIKFG
                     DALKQGDFQ"
BASE COUNT         3736 a         1701 c         1403 g         3594 t
ORIGIN      
        1 ttgataatct ctattaggcg ggataaaagt tgaagtaaaa tttagtttaa agttatgatc
       61 gagtttattt tgcattttta aattttctac atgtttcact aaagaattcg ctaaaaaaag
      121 cgcattatca ttatttattt caccataaga aaaatgaaac tgatttaata aatttttaat
      181 attttcaata tcttcctctt gaaaatattt gtatgcacta tatttctcaa catctgaacg
      241 cctttgacaa aaacaatgat aaaaaacatg cactgctaca acatcaaaat ttttagcaat
      301 ataatttcta taagagtcta aaaaatatat atttgcattg gctccataac ctcctattat
      361 aaaaactata gctttaatct ctttttcatc atcataactt atacggtatt caagtttgct
      421 agttcttttt atatttaatt ctacatcatc acaagaatcg atttcaaagc tttggtttat
      481 gagcatataa aggccttttt tattaattta tcgatattat attacaaaaa attaaaaagg
      541 taaatcatga caactcatat ctatgatttt ttagaaaaaa gtttaatcaa atttagcgaa
      601 aaaactgctt ttgtagaacc ctttgtcaaa gaaagaaagg aaatcactta caaagacttt
      661 gatctctttt ctaaaaaact agccagtgaa attttaaaaa ctttaggaaa tgataatcct
      721 actcaagctc ctgttttaat catcttgcct aaagggattg attgtttgat ttcatttttt
      781 ggagtggcac tcagtggaaa tttttataca cttttagatg aaaaaagtcc taaagaaaga
      841 gtagaaaaag tcatagaagt tttaaagcct aaacttttta tcacttcaaa ggacttaaat
      901 tttaacttag atttacctac gctttataca caagactttg aaagttttaa tatagatgag
      961 agtttaataa agcatgccaa agaaaaacat atagatacta atttactcta tgttttcttt
     1021 acaagtggga gcacaggcat tcctaaagga gtaagcatag ctcataagag tgtgattgat
     1081 tatacttttt gggtgtgtga gacttttaaa tttgatgaga atgaaatttt agccaatcaa
     1141 gcgccatttt attttgacaa tagcatttta gatatttttt caagtgtaaa atcaggagcg
     1201 actttacacc ttttacctaa tcatcttttt gcctttccaa ataaaatttt agaatgcctt
     1261 gaaaaagaaa aagtaagcac tatattttgg gtaccttcgg tgctgattta ttttgcaaat
     1321 actgaagctt tgaataattt tagtttaaac gccttaaaaa agatactttt ttgtggtgaa
     1381 atcatgccca ataaacagct caatatttgg cgtaaacact tacccaatgc cttatttgcc
     1441 aacctttatg gcccaacaga aatcactgat gtatgttctt tttatatcat caatcgcact
     1501 tttaaagatg aagaactttt accgatagga aaagcgtgca aaaacacaga acttttagtt
     1561 tttgatgaaa atatgaattt cataagtcct aaacaaatag gtgttaaagg ggagcttttc
     1621 gtgcgtggaa cttctttgtc tttagggtat tataatgaca aagaaaaaac caaacaagtt
     1681 tttactcaaa atcctttaca tgataattat ttagatttac tctataaaac aggagatatc
     1741 gtttcttata atgaatttgg agagctttta tgctacggaa gagcagataa tcagataaaa
     1801 tatatgggac atagaataga acttggagaa atagaaagcg tgataaattc tcatgtgaat
     1861 attaaaaaca gtgcttgtat ttttaaagaa gatattattt gtttttatga aagtgaagaa
     1921 gaaattaatt ttaaagcttt tttgaaagat aaattacctt cttatatgat cccaaaaaat
     1981 tttattaaac tcgacaaatt taagcttaat caaaatggta aaattgatag aaaggtttta
     2041 aaagaacttg tttaaataaa tattttataa tttcaaaaaa ctaaaggaga aaaaatgcaa
     2101 gaaatcaaac aattttttat caatatagaa agaacagata tcaatgagag tatggaaaat
     2161 ctagtaagtg aagattttat cgatagtatc gatatcatgg ctttggttgc cgaaatagaa
     2221 aaattttata aaaaaccctt aaaagcagaa tttatcacac ctgaaaattt tgaaagcttt
     2281 gaaaatatca aaaaaatgct tgaaactgca atgaaagact aatctttcct tgcaagttca
     2341 agctgttctt ttaaagaact gatgatttca tttttagaaa caataatttg tgctataaaa
     2401 tccgccacat catcccagtc tttgcttagt gtatgagtta aagtatagtt ttgttcgtat
     2461 tcttcccaat ttacaggagt aaaaagagaa tttttatgcg ggaaatattt gttttttacc
     2521 cattcaagtg aagaagcaaa ataatccaca taagctttag caatatcttt ttgcactgca
     2581 aattttaatc ttttttcttt gctgccttca aattttcttc ttgccataaa aagcaaagaa
     2641 ttaagattat cctgctttaa atctttttga tttaatcttg acataagctc cattcctaaa
     2701 agattaaaac tttcattttt ggtttgtttt aaaacaaaac tctcatccca ttcaagtcct
     2761 aaatgataaa caaaatcctt aagtaaagtc cctcctacat aatcctccct tagaagtctt
     2821 actatcaaat tttcttctcc aaatacctca gcatgagttt tgcaaatcca ttcatagtca
     2881 aaaatatatt ttctaggatg atcttgcgga gcaaaatcag cagaataata ccccatattg
     2941 tttttatgat cttgagaaca atgtgagttt aaataaccca aagtatctct aaaatacaca
     3001 ataatataaa tttgagtaaa acctaactct ctcataatct tttctaaaat ttctacatgt
     3061 tttttggtag aaaaatccca aactataccc tcagctgaaa aaataaattt tttatcttta
     3121 tgtaaagcac tttcactttt aaaattttct atagctctaa gaagtctttc atttgtgata
     3181 tgacttaaaa cactctcttt ttttaaaata tcttcttttt gaaccaattc taaaaccata
     3241 tccaccaaag cccaatgcct atttgccact ctaagacttt ttgggtaaat ataagctttt
     3301 tgcaaaagct tttcttcgtt ttgcatcaag aagccttgtt tttcttgatt tcctgtatta
     3361 gtagttccta tatgtaaata tgctgtcatt ttatatcctt tatctttatt ttaatttatc
     3421 atctctaact caaatttatc ttctaaatcc ttaaacacaa atactttatt cccacaagga
     3481 taagagatag aattttcttg cataaaagat tttcttcctt gtagtttttc aagcattaaa
     3541 ggaagttctt ttctaaataa agccctatca gtcattctaa gtccatgctc taaacttttt
     3601 acaaatctac catctatatc attttcatcc tttattaaat gtaaagttgc atcatatcct
     3661 aattcctgat aacacttata aagttctatt ttattttgca ctggcgcacc catatcttgt
     3721 atactatgat agcttacaaa aatggtattt ttatttaaat ttgattgaat ttgaagatgg
     3781 tttgaattta aaactgctct gattaaataa ttttcatcac caaaataata agaagaattc
     3841 atatttctat tccagtattt atatacaaaa caataaagtc tataaccact tccttcgaaa
     3901 taaaattccc cttgattcat ttctcttcct aaaatgcacg ccaaaaatgg caagcaaaca
     3961 cctgaattat caatcacacc atccacatac caaggagcta tttttgctat gagtaaagat
     4021 aggtatcctc cataagaccc ccccccataa atttttggta aatctgcaaa ttttggaaag
     4081 cgtttaacta gatcttttaa agcattgata tggtcaatag ctgccataac gccatagttt
     4141 tgataatctc cattgggtgg gataaaatca caagaaagtt ctattttttg gctttcatca
     4201 accaaacctg cttgtttcat tttattaact ttttgctcta taagaggaat aatttgttca
     4261 aaattatctt tattaaccga taaatgtcct aaattaatat tttttaaaat gccatttaca
     4321 cgctctaaat catcttgatt gggaataagc tttggattat acttttgatc aatactttgt
     4381 cttgcacaaa aacaatgata aaaaacatgt accactacaa catcaaaatt tttagcaata
     4441 tattccctat caaaatctaa aaaagaaata tttgcattag ctccaaaacc acccactata
     4501 aaaactatag ctttgagatc tttttcatca tcatagctaa tgcggtattc aagcttgcta
     4561 gttcttttaa tgcctagttc tacatcatca caagaatcaa tttcaaaggt ttgatttata
     4621 agcaatttta agccttttat tgtattttaa agacaattat acttaaattt tagtaaaata
     4681 aaacacaaaa acaaggctta actatgaaaa atctttgcat aatccctgct cgtggtggat
     4741 caaaaagaat tcctagaaaa aatatcattg attttctagg taaaccttta atctcttata
     4801 gcatagaaaa tgctttaaat tcaggtattt ttgatgaagt ggtgctttca agcgatgatg
     4861 aagaaatcat agaagtagcc ttaaaatacg gtgcaaaagc tccttttgtg cgtgataaaa
     4921 atttaagcga tgattatgct tcaagcactg ctgtagtgca aaatgccata gaaattttac
     4981 aaagccaaaa tcaaatttat gatcatgtct gctgccttta tgctactgct cctttgttaa
     5041 ataaagacat tttaaaacaa gcctatgaaa aatttataca aaatcaaagc aagtttttat
     5101 ttgctgctac tgggtttgag tatcctatac aaagggcatt ttatctaaat gaaaacaatc
     5161 aagtttatat gtttgatgaa aaacattata aaagtcgttc acaagatcta acaaaagctt
     5221 atcatgatgc aggagctttt tattttggta caagcaaagc ttggcttgag gaagatttta
     5281 tatttaaacc tcattctagc gtgtttgtat tgccaagaaa tttagtttgc gatatagaca
     5341 ccatacaaga tttggaattt gcaaaaatac tttataaggt aaatcatgaa agtgcttttt
     5401 agaagcgata gctccagtca aataggcttt ggacacatta aacgcgatct agtcttagct
     5461 aaacaatata gcgatgtaag ttttgcttgc ttgcctttag aaggctcctt gatcgatgaa
     5521 attccttatc ctgtttatga gcttagtagc gaaagtatct acgagcttat caatctcatc
     5581 aaagaagaaa aatttgaact tcttatcatt gatcactatg gcatcagcgt agatgatgaa
     5641 aaactgatca agcttgaaac aggggtgaaa attctaagct ttgatgatga aataaagcct
     5701 catcattgtg atattttact caatgtcaat gcctatgcaa aagcaagtga ttatgaaggt
     5761 ttagtgcctt ttaaatgcga agtaagatgt ggtttttctt atgctttaat cagggaagaa
     5821 ttttatcaag aggccaaaga aaatagagaa aaaaaatatg attttttcat ttgcatgggt
     5881 ggaactgata taaaaaacct ttctttacaa attgctagcg aattacctaa aacaaaaatc
     5941 atcagcattg caaccagctc ttctaatcct aatcttaaaa aattgcaaaa atttgcaaaa
     6001 ttacataaca atattagatt atttatcgat catgaaaata ttgcaaaatt gatgaatgaa
     6061 agcaataaac tcatcattag tgcaagttct ttagtcaatg aagccttgct tttaaaggca
     6121 aatttcaaag ctatttgtta tgttaaaaat caagaatcta cagcaacttg gcttgctaaa
     6181 aaagggtatg aagtggagta taagtattga taaaacttaa aaatttcaca gaacttaatt
     6241 ctcaagaaat agagctgatt tttaaatggc gcaatcaccc cgatatcaat caatttatga
     6301 aaacaaaata tattgatttt gaagaacatt taagattttt aaaaaaatta catcaagatt
     6361 ctagcaaaaa atatttttta gtttttcaag atgaacagat tatcggcgta attgattttg
     6421 tcaatatcac aactaaatct tgcgaatttg gactttacgc aaaacctaat ttaaaaggcg
     6481 taggacaaat tttaatgaat gaaattataa aatacgcttt tgaaaactta aaagtaaata
     6541 ctcttaaagc ttatgttttc aaagacaatc gcaaagcttt aaaattatat caacaaaatc
     6601 attttactat ttatgatgaa gataaagatt tttaccatat ttgcctaaag caatctgact
     6661 gcaaagcctt gcctagctaa ttcttctttt acatctttag gggtatactt agaaaaatga
     6721 aaaatataag cacccgctaa agcatcagca cctaaattta aagcctcaac tccatcactt
     6781 ggattgctaa gtcctccatt gataataaga ggaattttaa gtttattttg aaagatcttt
     6841 aaaagttcta aatcataacc ctttgctttt ccttcaaaat ccacagaggt taaaagaagc
     6901 tctccagctc cttttttttc atattctaaa gcaagttcta aaggactttt ttcaagtaaa
     6961 tttcccctgt cataaacaca aaattgccct ccttttcttt taacatctat agaacaaact
     7021 atacattgag aaccaaaacg attagccgct ttacttataa aatccatatc ttctaaggcc
     7081 ttagaattga tagaaatttt atccgcacct aaatttaaaa tcttttgtat atcttcaagg
     7141 gtttttatcc cgccacctat agttaaaggc ataaaacatt ctttagcaag atcttctata
     7201 ctttcaaaat ctatttctcc actttttgaa gcatctatat ctaagataat aagctcatca
     7261 acattgcgtg cattataaat tctcattgtt gaagttaaat gccctatagt gcgaaaatct
     7321 ttaaattcta tacttttaac aagttgtccg ttttttaaca aaacacaagg gataattcta
     7381 gtttttaaca tttaaagcct tataaaattt tctaaaagtt ttaagcctaa attttgactt
     7441 ttttcggggt gaaattgtgt agcaaaaata tgatcttttt gtaaagatgc aacaaattta
     7501 tgtccgtatt gtgctttagc acttacaaac tcatctttgc atttcacata aaaagaatgc
     7561 acaaaataaa aatcactctt attatctatg ccttgataca aaggaacttg ttttaaaatt
     7621 tcaagctcat tccaacccat atgtgggatt tttaaattta aatcctcttc aaatttgact
     7681 acttcacctt ctataaaacc aagtccttcg caaactccac cttcatagcc cctttctaaa
     7741 aaaagctgca ttcctaaaca aatgcctaaa ataggttttt tttgtactaa aacttgctct
     7801 tttaaagctt ctataaaacc aaattctttt aaatttttca tcgcttcttt aaaagatccc
     7861 actccaggta aaagcaattt atctgctttt tgcaaatctt ttggattttt agctatgaaa
     7921 tttatagctc ctattttttc aaaagcctta gcaacagagt ttaaatttcc cgccttgtaa
     7981 tcaatgagcg ctatcatttt aaaacacact cgtcttttct taccaaagaa ccatcataat
     8041 ctcttataaa tttaccattt tcatcacgtt taaaaatttt tttattggta aaagaatcta
     8101 ctattttttg aaattcttcc tcgctaaaac cactgaattc aaggtatttt ttaatagcct
     8161 ttttaggggg cttgccatcg tatttttgta ccaaacgcac cccttcttca cggctgatat
     8221 aacctaaacg aatatccaaa caagcattat ccgttgctct accaaagccg tatttgcagt
     8281 attttaaata atcatgcaca tgattagaat aacaatctaa attttcaaaa ttttcataag
     8341 tagtctcaac aggatgatct agagttaaaa aaccatattt tttagaaatt tcaagaattt
     8401 ttttataatc ccatttaaaa taatacccta aaaatagccc agtaacccct actctttgaa
     8461 gttcttcatc acttggataa gtatataaaa acaaatcttt ttcagtgata ccatttaccc
     8521 caagcatatc agaagcacga tttcctaaaa gcccgccaaa ttcttcaagc cactctctgc
     8581 ctaaaatatt tttattttta ctactcgcag gaccgccata ctctatctgc ggactttctc
     8641 cccagatgat caaaggcact ccaaaattta ctgctatgcg tggaacagaa gtaaaaattc
     8701 ccaaatggtt ttgccactca ttatcccctg ttcttataaa agcttcacgg gcaagttttt
     8761 gataaacttt tggatcgcgc ttgatatgga tcaaatccac gccaagatga tttaaattgt
     8821 ctaaattttt gcgccctatt ttcgtaggta cgctaggctc aaaacacaca cacaaaggat
     8881 taagtccaag ttcaagcatt ttaaccactt gaaaagtaga atcttttccg ccacttactc
     8941 cgataacaca atcataaaca ggatgttttt tgtatttttt tataagctca aaaaattctt
     9001 tttctctttc ttgccaatta atattttgat ttttagcttc ttgagaacga caagcatcac
     9061 aaacaccttc ttcatcaaaa tgtaaatcgg gcttagtatc tggcatcaca cattttttac
     9121 aaaatttcat aaatttcctt taattagtct taaatatata tatatcgtta taattaaatt
     9181 ttattttatg attttatata tttatattat ataaaaatta aaaaatgaat gaattctata
     9241 atttaaatcc atatggcatt ttttgaatga aaccaagcaa aatcataaca aagttgtaat
     9301 atttatataa tataaatata taaattgaag aaatatataa tataattata tatcatttta
     9361 gtcaggaaat ttaccaaaga aagaaaagta tgcaaatagg aaattttaac accgataaaa
     9421 aggtttttat catagcagaa cttagtgcaa atcacgcagg aagtcttgag atggcacttc
     9481 aaagtataaa agctgccaaa aaagcaggtg ctgatgcgat aaaaattcaa acttacactc
     9541 cagatagcat gactctaaat agcaacaaag aagattttat tattaagggt gggctttggg
     9601 ataaaagaaa actttatgag ctttacgaaa gcgcaaaaac tccttatgaa tggcattctc
     9661 aaatctttga aaccgcacaa aatgaaggca tactttgttt ttcaagtcct tttgccaaag
     9721 aagatttaga atttctaaaa cgctttgatc ctatagccta taaaatcgct tcttttgaag
     9781 ctaatgatga aaatttcgtg cgtttaatcg ccaaagaaaa aaaacctact atcgtttcaa
     9841 cgggcattgc tacagaagaa gaacttttta aaatctgtga aatttttaaa gaagaaaaaa
     9901 atcctgattt aatcttttta aaatgcactt cggcttatcc tactgccata gaagatatga
     9961 atttaaaagg catagtaagt ttaaaagaaa aatttaatgt tgaagttgga ctaagcgatc
    10021 acagctttgg ttttttagct cctgttatgg cagtagcact tggagctaga gtgatagaaa
    10081 agcattttat gttagataaa aatatagaaa gtgaagacag taaatttagt cttgattttg
    10141 atgaatttaa agctatggta gatgcggtta gacagaccga aagtgcttta ggcgatggta
    10201 agttagattt agatgaaaag gcgcttaaaa accgtgtttt tgcaagaagt ttatatgcaa
    10261 gtaaggatat caaaaaaggt gaaattttca gcgaagaaaa tgtaaaatca gtgcgtcctt
    10321 cttttggact acatcctaaa ttttatcaag agcttttagg aaaaaaagct actaaagata
    10381 taaaatttgg cgatgcttta aaacaaggag atttccaatg accttcatct ctac
//
LOCUS       DARGED010000052        10375 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.052, whole genome shotgun sequence.
ACCESSION   DARGED010000052 DARGED010000000
VERSION     DARGED010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10375
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.052"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..633
                     /locus_tag="SFZ84_001021"
     CDS             <1..633
                     /locus_tag="SFZ84_001021"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG8203141.1"
                     /translation="AGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNFLYNYTITN
                     LTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFS
                     QRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSH
                     FDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL"
     gene            712..912
                     /gene="rpmE"
                     /locus_tag="SFZ84_001022"
     CDS             712..912
                     /gene="rpmE"
                     /locus_tag="SFZ84_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG8203142.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            915..1739
                     /gene="rsmI"
                     /locus_tag="SFZ84_001023"
     CDS             915..1739
                     /gene="rsmI"
                     /locus_tag="SFZ84_001023"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG8203143.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDNQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            1753..2436
                     /gene="rlmB"
                     /locus_tag="SFZ84_001024"
     CDS             1753..2436
                     /gene="rlmB"
                     /locus_tag="SFZ84_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG8203144.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            2429..3367
                     /locus_tag="SFZ84_001025"
     CDS             2429..3367
                     /locus_tag="SFZ84_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203145.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNRTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            3361..4167
                     /locus_tag="SFZ84_001026"
     CDS             3361..4167
                     /locus_tag="SFZ84_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203146.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIGVYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            4179..5381
                     /locus_tag="SFZ84_001027"
     CDS             4179..5381
                     /locus_tag="SFZ84_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG8203147.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPN
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPCPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            5385..6632
                     /locus_tag="SFZ84_001028"
     CDS             5385..6632
                     /locus_tag="SFZ84_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG8203148.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            6632..6970
                     /locus_tag="SFZ84_001029"
     CDS             6632..6970
                     /locus_tag="SFZ84_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEG8203149.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            7027..7341
                     /gene="trxA"
                     /locus_tag="SFZ84_001030"
     CDS             7027..7341
                     /gene="trxA"
                     /locus_tag="SFZ84_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG8203150.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            7475..8413
                     /gene="trxB"
                     /locus_tag="SFZ84_001031"
     CDS             7475..8413
                     /gene="trxB"
                     /locus_tag="SFZ84_001031"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG8203151.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(8451..10232)
                     /locus_tag="SFZ84_001032"
     CDS             complement(8451..10232)
                     /locus_tag="SFZ84_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG8203152.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAVMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAIKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYLTCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         3803 a         1413 c         1722 g         3437 t
ORIGIN      
        1 gctggagaag agtttataca acttcaaggt gaaaacttta accatttaaa agtaagaaga
       61 gtaaaggaaa attcggagct aaatcttaga aatttacaag ataattttct ttacaactat
      121 acaatcacaa atttaacaag aaattcttgc actttaaaat ttttaaacaa aaaatcacaa
      181 aatataaaac aaagtgaatt aaacttagcc ttagccatta tagatattaa aattttagaa
      241 aaaactctac ctttcttaaa tgaacttgga gtaaaaaagt tacatttggt ttttacaaat
      301 ttttcacaaa gaaattttaa aatcgattta gaaagatttg aaaaaatcat tatttcttct
      361 tgtgaacaat gcggtagaaa tactaaaatg gatttaatta tccaccaaag cactcaagaa
      421 tttgttcaaa aatttccaaa tgcaattatg gttgattttc aaggagaaca acaaagtcat
      481 ttcgatgaaa aagaattata ttttataggt cctgaaggtg gatttaacaa tgatgagaga
      541 ttattgttta accggaaaat ctctcttaaa agctctaata ttctaaaaag tcaaacagct
      601 attatagcta tagcttcaaa aattttgctt taacttttct taaattaatc tcttttttat
      661 gttaaataat ttataatcac ggcttattgt tttaattttt aaggaaaact aatgaaaaaa
      721 gaaattcacc cagaatatgt agaatgcaaa gtaagttgtg cttgtggaaa tacttttaca
      781 acaaagtcaa acaaagcaga attaagagta gatatttgtt caaattgcca tccttttttt
      841 acaggcagtg aaaaaattgt agatgctgca ggtcgtgtag agaaatttaa gaaaaaatac
      901 gcaatgcaat aattatgctt tattttattc ctactcccat aggaaattta agcgatattt
      961 cttttagagc cttagaactt ttaaagactt gcgatcttgt gttttgcgaa gatacaagag
     1021 taagtaagtc tttgatttcg ttattaaata ccaaatttca cactgatata catatttcta
     1081 aatttatagc cttacactcc cataatgaaa aagaagtttt agcaagtatt gatttaaaga
     1141 tatttgaaaa aaatgtagct tatttaagcg atgcaggaat gccagggatt agtgatcctg
     1201 gcaaggcttt ggtagaattt gcacaagaaa ataatatcac ctatgaaatt ttaccaggtg
     1261 caaatgcagc cttagttgct cttgtaagct cagcattttg tcaaaaagaa tttatcttta
     1321 ttggtttttt agcaaataaa ggcaaagaaa gacaaaaaga tatagaaaaa attttaaact
     1381 ttccttatcc aagtattatt tacgaatccc ccaagcgtat tttatcttta gtagaacaga
     1441 ttatgattct agacaaccaa agagaaattt ttttgattaa agaaatcagt aaaaaatttg
     1501 aaaaaaaatt taaaggcaat gctaaagagc tttctgaaat tttaaaaaag tctaatttaa
     1561 acggtgaatg ggttgtagta ctgcaatcaa aagagcaaaa ttttttgcaa aatactcttt
     1621 gtgaaaaaga tattatggat ttagagctgt ctttaaaagc aaaagcaaaa ttattatcaa
     1681 agatcaatgg aaaaaatgca aaagaaattt atcaaaaact gcttttaagt caagattagg
     1741 taaaatttta atatgatagt ttatgggaag caaatatttt tttatatttt agaatatcat
     1801 aaagactgta tcaatgagct ttatttagca aaagaatgtg ataaaattac tttttccaaa
     1861 atcgcaaaat caggttttaa aatcaaaaaa cttgatttta aaactgctca agcttatgcg
     1921 aaaggtggaa atcatcaagg ttttttgcta gatattaaag aaagttcttt tgcaaattta
     1981 aatgagatca aaaaaaatga ttttattgtt atgctttatg gaattagtga tgtaggaaat
     2041 ataggggcta tcacgcgtac agcttatgct ttaggggttg gggctttaat ttttattggt
     2101 gaaaaattag ccatggaagg agtaattcgc acaagcagcg gagcggctct tgatttacct
     2161 attgtgataa gcaacgatgc tttaagtgta ataaatgaac taaaacaagt aggtttttat
     2221 ttttatgcga gtgatggctc gggaaaagaa attcacagtg taaaaataag caatggtaaa
     2281 aaagttttag ttttgggtag tgagggtttt ggtttaagct ctaaaattgt aaaaaaatgc
     2341 gatgaatgtg tgggcattgc gatgaaaaat aattttgata gtcttaatgt cagcgctgct
     2401 tttgcaatac tttgtgatag gatgttaaat gcttaattgg aaaaaaatac aagaattaaa
     2461 tttaaaagaa gttgcagcaa aaacgcaaat tgaacttgat tttcttgaag ctttagtaga
     2521 aaagaatttt gctgttttaa gtcgttttaa tgttaaaggt tttgttaaaa ttttgagcag
     2581 agaatacgaa ctcgacttta gtgattttaa cgaagagtat gaagcttatc ttaacgaaaa
     2641 caatcctact ccacaaacaa aatcaaaaat gataacccca aaactagatg cttatagtca
     2701 aaaatccttt aacacttggc cttttttgat tgttcttatt gttttagtga ttataggaag
     2761 tggaatttat tattttgata cacttaaaac ttttttcaaa gatgaacaaa ataatactag
     2821 tgcaacagtt atagatatca taggacaagc acaagaaaat ttaaaatctt taggtggaaa
     2881 caatgttgtt gttatagaca acaataaagc acaagaaaca aatcgaacag agagcgtttt
     2941 accaagccaa aacatctcat tacaagaaaa tgataaaaac ataagcatag aaaataatat
     3001 cagtgaaaat aacacaaccc tactcgatga agaaaaaaat acccaaatcc aagaagacac
     3061 aaatacacca aaaactgatt ctttaaaaga agcacatttt aaaacctcta ccaagatttg
     3121 gataggtttg atagatttaa aaagccttaa aaaaacaagc tttgttaaag aaaaagattt
     3181 taatatttct ttagataaag atcagttaat tttaacaggg gctgcagctt taacaatgtt
     3241 tgatcaagaa aataaagaac aaaaatttcc tgcaggaatt tcaaaacgtt tcttgattaa
     3301 agatggaaaa attacaagta tttcagctgc tgaatttgta aaattaaata aaggtaaaga
     3361 atggtaaaaa aaattattat tcttactttt tgggttaata tatcttttgc aatctcaagt
     3421 cttgaattag caaaaaattt agtaaacaat cctagtaaaa attctcaact agaattatta
     3481 ttttcaaata attcttacat agataataat ggaaattgtg atattgcaaa aatatctcaa
     3541 atattaaaaa ccaattcttt aattgcctta acactatcaa atcctcaaag tctaagacta
     3601 aattttaaag caaaagctga tgaagttatg ttttttaaaa ttttatccga tgttttaaca
     3661 gatgctggat atatatattt tatccctaca gatttgattt taagagaagg aaatattgac
     3721 tataccatac aagtagaatc tcaatatgtt ttagatcctg gaacgcttta caatctctta
     3781 aaagaaaatt ctgtctatat aaataatatt aagcgtattg gggtatatga ctatgaatat
     3841 gatttaaatt tttccaatgc tgtattaaaa accaatacaa atgttaattt aaatactcca
     3901 aaatcattag aaaagcccct taaagactat gtgcttgatt taaaaaatgc tacaaatttg
     3961 attattgatg caaatgattt agacaattgg tttcctaaaa tcttcttttt agataaaaat
     4021 ctgaatctaa ttaaagcagt aaaaagcgaa aataaaaata atcatttttc agaacttatt
     4081 ccaaatggtg ctatatatgc tattgtaagc gatatgtata gtttagataa tatacgcagg
     4141 ggtttaaaaa tcacacttaa aaaataaagg attaagaaat gtttgatgaa atccgtttta
     4201 ataccataga aagacttcca aattatgttt tcgcagaagt aaatgcgata aaaatggcag
     4261 caagacgtgc tggagaggat atcatcgact tttcaatggg aaatcccaat ggtaaaactc
     4321 cacaacacat tatagataaa ctttgtgaaa gtgctaacaa agataaaacc tcgggatatt
     4381 ctacatccat ggggatttat aaacttcgct tggcaatttg taattggtat aaaagaaaat
     4441 ataatgtcaa cctagatcct gaaaatgaag ttgtagctac tatgggttca aaagagggtt
     4501 ttgtaaatct tgcaagagcg attataaatc ctggagatgt tgctattgtg ccaactcctg
     4561 cttatcctat acatactcaa gcttttatta tagcaggagg taatgtagca aaaatgcctt
     4621 tagcttataa tgaaaaattt gagcttgatg aaaatcaatt ttttgaaaat ttacataaaa
     4681 ctttaaatga aagcatcccg tgtccaaaat atgtcgttgt taatttcccg cataatccaa
     4741 caacagtaac ttgtgagaaa agtttttatg aaagattgat agcaacggca aaaaaagaaa
     4801 gattttatat tatttcagat attgcttatg cagatttaac ttatgatgac tataaaactc
     4861 cttctatttt ggaaattgaa ggcgcaaaag atgtagcggt agaaacttac actctttcaa
     4921 aatcttacaa tatggcaggc tggcgcgtgg gttttgtagt aggaaataaa cgcttagtca
     4981 gtgcgcttaa aaaaataaaa tcttggtttg attatggtat gtacacacct attcaagtag
     5041 cagctaccat agctttagat ggagatcaaa cttgtgtaga tgaaatccgt gcaacttatg
     5101 ataaaagaat gcacatttta cttgaagctt ttgaaaatgc aggctggaaa cttcaaaaac
     5161 caagagcaag tatgtttgtt tgggcaaaac tccctgaaag caaaagacat ttaaaaagtt
     5221 tagaattttc aaagcaactt ttacagcgtg ctagtgttgc agtaagtcct ggggtaggtt
     5281 ttggcgaagc aggtgatgag tatgtaagaa ttgctttaat tgaaaatgaa aatcgcatac
     5341 gccaagctgc acgtaatatc aaaaaatatt taaaagagta agttatgaaa gtagcgattc
     5401 ttggttatgg cactgttgga agtgcggtgg ttaaatttct tttagaaaat gataaactca
     5461 ttcgtgcaag atgtgggcaa agcataactc ctgtgatcgc tcttgctaga agtcctaaaa
     5521 aaaatgcttt aattccaatt actcatagcg ttgcagaaat tttaaatgct gatgtagatg
     5581 tttttgtaga attaatgggt ggggtggatg aagcttttaa aatagtgagt gaaattttaa
     5641 aaaagaaaaa agctgttgtt actgcaaata aagctatgct tgcttatcat cgttatgaac
     5701 ttgaaaattt ggctaaaaat ttagcttttg gttatgaagc aagtgtggct ggaggaattc
     5761 ctattatcaa ggttttaaaa gaaggtttaa gtgcaaataa tattttggct ataaaaggga
     5821 ttttaaatgg tacgagtaat tatattttaa gttctatgag tcaaaaaaat atgagtttta
     5881 aacaagcttt gcaaatagct caaaatttag gttatgcaga ggctgatcca acttttgaca
     5941 tagaagggca agatgcagca cataaactgc ttgttttatc aagtatcgct tataatctta
     6001 aagctaaacc tgaagatatt ttgatcgagg gtattagtga aattgcacct gaagatatgt
     6061 attttgctaa tgagtttgaa tttaccataa aacttttagg tatagctaag gtgcgtgaaa
     6121 ataaagtaga attaagggtt catcctacta tgatagataa agaaaaaatg cttgcaaaag
     6181 ttgatggagt gatgaatgct ataagcatta atggagattt gttgggtgaa agtttgtatt
     6241 atggagcagg agcaggagga gaggccactg caagtgctgt gatttcagat cttatggata
     6301 tagcaagaga tcaggtaaaa gcaccaatgc ttggttttgt gaatacttta gaatacaagc
     6361 ttttaagcaa agatgaaatt tatacaaaat attatttaag ggtgaaagtt gaagataaaa
     6421 tagggatttt atctaaaatc acacaattga tgagtgaaaa taatatttct atcgatagtt
     6481 ttttacaaaa acctaaaaaa aatgatgaaa attacagtac tttgtttttt actacacatt
     6541 taacttatga aaaaagcata caaaatttgc ttgaaatttt acgcaaacaa gattttataa
     6601 aaaccaagcc ttttatgatg cgtatagaat aatgggtgta aaagcttatt tagatggaat
     6661 tttaggggaa gataaggctt gtaaattttt aaaaaaacaa ggctttgaaa ttttaaaaag
     6721 aaatttccat tctaaatttg gagaaatcga tataatagcc aaaaaagatg aaattttaca
     6781 ttttatagag gttaaattta ctcaaaatga ttatgaagtt tccgagcgtt tggatagaaa
     6841 aaaacttgaa aaaattttaa aaactataga attttatcat cttaaaaatg gaatttcatc
     6901 ggattttcag attgatctga tttgcattaa aaatgatgtg atacaatttt gcgaaaatat
     6961 aagtttttaa gctgatattt aaaaaaataa aatacaatta gacaaaaatt aaagaaagga
     7021 aaaattatgg gaaaatatat tgaattaaca agtgataatt ttgctcaagc aaaagaaggt
     7081 gtagctttag ttgatttttg ggctccatgg tgcggacctt gtagaatgct tgctccggtt
     7141 attgatgaac ttgcaaatga cttcgatggt aaagctaaaa tttgcaaagt aaatacagat
     7201 gaacaaggtg atttagcagc tgaatttggt gttcgctcta ttcctacgct tattttcttt
     7261 aaaaatggtg aagttgtaga tcaactcgtt ggtgcacaat ctaaacaagc aattagtgat
     7321 aaactaaact ctttactata aactaaaggc tagtataact agccttcttc ttaaaaattt
     7381 caaatttata ctaaataata atttttatta actactatta agaataattt ttatatcatt
     7441 attaataata aaattcaata taaaggaaat ataaatgtta gatgtagcaa tcataggtgg
     7501 aggtcctgct ggacttagtg ccggacttta tgcaactaga ggtggactta aaaatgtagt
     7561 aatgtttgaa aaaggtatgc ctggtggaca aattacctca agttctgaga tagaaaatta
     7621 tccaggtgta gcccaagtta tggatggaat ttcttttatg gctccttgga gtgaacaatg
     7681 tatgcgtttt ggtttaaaac atgaaatggt tggagtagaa caaattttaa aaaatagtga
     7741 tggaagtttt accatcaaat tagaaggtgg taaaacagaa cttgctaaag ctgtgatagt
     7801 ttgtacaggc tcagctccaa aaaaagcagg ttttaagggc gaagatgaat tttttggaaa
     7861 aggtgtaagc acttgtgcaa cttgtgatgg atttttttat aaaaataaag aagttgcagt
     7921 tttaggtggt ggagatacgg ctttagaaga agctttatat ctagcaaata tttgttctaa
     7981 ggtttatctt atccaccgca gagatgagtt tagagcagct ccatctacag tagaaaaagt
     8041 taagaaaaac gaaaaaatag aactcattac tagcgcaagt gtagatgaag tatatggtga
     8101 taaaatgggt gttactgggg taaaagtaaa attaaaagat ggtagtatta gagatttaaa
     8161 tgttccagga atttttactt ttgttggtct taatgtaaga aatgaaattt taaaacaaga
     8221 cgatggtaag tttttatgca atatggaaga aggtgggcaa gtaagtgttg atcttaaaat
     8281 gcaaactagc gttgctggac tttttgccgc aggggacctt agaaaagatg cgcctaagca
     8341 agttatttgt gctgcaggtg atggagctgt agctgcatta agtgctatgg cttatataga
     8401 aagcttgcat taagatttta taaagttgct aaaagcaact ttatttttat ttagcttcct
     8461 atcactccac catcaagttt tcttatcatc attacacttg atcttggcgt ttttccataa
     8521 ggaaaagtac tacctttcaa accttctcct ggatgttgta tgcctacaaa cattgtagta
     8581 taatcctcac taaaagcaat ccctgttaat tcacaagcaa taggtcctgt taaaaagcgt
     8641 ctgatttccc ctgtttttgg atttgctgct agcatgcagt tatttcccat gccttcgtat
     8701 tcatctttat tagaataaga tccatctgtt tgtatccaaa gtcttccatc tctatcaaat
     8761 ttaagtccat caggagaatt gaatttattt tcacttgtaa tattatttga gcctttatat
     8821 aagccttgtt ggttatcagg atttccagca agagcaaaaa tttcccaagt aaaatcatcg
     8881 tctttatgag aattttttgg catccatttt aaaatttgtc cataaacatt tttagtcctt
     8941 ggatttgctg cattaggttc ttggcgattt ttgttgttcg ttagtgttgc aaatacttct
     9001 ttagaaccac tttgtttatg gcttgctatc cattcacatc tatccatagg agttgcacct
     9061 acaatacttg cagcaagacg cgtattgatg agtacttgag cttgagactt aaaaccattt
     9121 ttttcattta ggctgttttt gccatattct aaagctatcc attttccctg tcctttaaaa
     9181 tctcccacat tgccgttaaa ctgtcctaca tacaaaatac cttcatctaa aattttactt
     9241 gtatcagcac cttttttgta tttatgtttg ctaacaaatt tataaataaa ttcattcatc
     9301 tcatcatcac ccatataaac tataacagaa ccatcttttt ctacgataat ttctgcattt
     9361 tcatgtttaa aacgccctaa agaagttctt ttaacaggtg tgctttttgc atcaaaagga
     9421 ttgatttcca ctatccagcc aaaacgattg gcttcatcga tatttttagc taaatcaaat
     9481 ctttcatcaa atttttccca tccataaaga ctagttttgt taaatccata gcgtttaaga
     9541 gagtcattaa attctagatt ttcatctgaa cttccaaaaa aatcgtcaaa attttcttca
     9601 caggtgagat aagttcccca aggtgtttgt ccatttgcac aatttgcaaa agttccatga
     9661 acaaattttt cattttttaa aacttctttt ttagctgctc cacttacttg cattttagtg
     9721 tttgcatcga ttctgcggtt atacttagag tctaaaacca cagtccaatc atcacccttt
     9781 ttttcgattt ctaagatact cacacccaca ctggcttgct catataaaat atcttctttg
     9841 cttaaatttt taccatgatg attaaacatg atttcaggat ttatatattc attattaaca
     9901 gctaaaattc ctctgttttt tgaaagtgga aaaaaactca taccatcatc gttatctcca
     9961 aaaaccaaat gagcattttt aattgcattc atatcgatga ttttattttc atcataaggt
    10021 tttgctttac taaaaagtgg atcaccccaa gaaattaaaa cctttgcttc ataaccttgc
    10081 ggtactataa ctttatcttg tgtgcttgca ctaacagctt taaaacctaa caaatcctta
    10141 tccttaagca taacagcact taaatttgaa cttgcaaaaa aagccaccat agaacctaaa
    10201 gctgaacctt ttaaaaacaa tcttctttcc atttgttttt accccatatt gaaatttaaa
    10261 acaatggaag tataaaaata tttggaaact ttttagaaac tttgatgaaa aatttaaatt
    10321 gaaggaaaaa tttataccta gttttttact aggtataaat gattaattaa aacct
//
LOCUS       DARGED010000053        10302 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.053, whole genome shotgun sequence.
ACCESSION   DARGED010000053 DARGED010000000
VERSION     DARGED010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.053"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(35..1966)
                     /locus_tag="SFZ84_001033"
     CDS             complement(35..1966)
                     /locus_tag="SFZ84_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8203153.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(1970..3259)
                     /locus_tag="SFZ84_001034"
     CDS             complement(1970..3259)
                     /locus_tag="SFZ84_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8203154.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSIGDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQ
                     VIINLLSNALKYSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSF
                     GLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            complement(3253..3915)
                     /locus_tag="SFZ84_001035"
     CDS             complement(3253..3915)
                     /locus_tag="SFZ84_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8203155.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDHELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(3902..5485)
                     /locus_tag="SFZ84_001036"
     CDS             complement(3902..5485)
                     /locus_tag="SFZ84_001036"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG8203156.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(5482..5970)
                     /locus_tag="SFZ84_001037"
     CDS             complement(5482..5970)
                     /locus_tag="SFZ84_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203157.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(5970..7640)
                     /locus_tag="SFZ84_001038"
     CDS             complement(5970..7640)
                     /locus_tag="SFZ84_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG8203158.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(7772..8605)
                     /locus_tag="SFZ84_001039"
     CDS             complement(7772..8605)
                     /locus_tag="SFZ84_001039"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG8203159.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKKFKI
                     N"
     gene            complement(8595..9881)
                     /gene="aroA"
                     /locus_tag="SFZ84_001040"
     CDS             complement(8595..9881)
                     /gene="aroA"
                     /locus_tag="SFZ84_001040"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG8203160.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLYIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            complement(9878..>10302)
                     /locus_tag="SFZ84_001041"
     CDS             complement(9878..>10302)
                     /locus_tag="SFZ84_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG8203161.1"
                     /translation="DIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKI
                     AKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYS
                     ITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
BASE COUNT         3302 a         1828 c         1203 g         3969 t
ORIGIN      
        1 gctccataga ataaaaaata taaaatctct ttaattataa attctcgctt ttctctaata
       61 ctaaaaaata ctcattttct agaatttcaa gttctttttg cattacttca agctcttgat
      121 aaagcttgtt aatacctatt tcttgatata catttggatc ggataaatct tgatttaatt
      181 tagctatctt ttgctctaaa aaatctattt tttcaggatg gttttttaat atctcatttt
      241 ctttgtagct caattttttg gagctttttt ctttttggtt attattttgc tcttgggttt
      301 gaagctctaa agcaaaatta tccaattctt caatttcttt ttcattttca agatattcag
      361 tataaagagt gtgtaaaata tttatatatc catttccctc aaaagcataa agttttgttg
      421 cgattttatc aacaaaatat ctatcgtgtg atactagcaa aatagcccct tcaaaactaa
      481 gtaagtattc ttctaatata ttaatcgtag ctatatcaag atcattagtt ggctcatcta
      541 aaatcaaaac atcatattct ttagtaaaaa gcaaggctaa agcaacgcga tttttctctc
      601 caccacttaa aagagccacg cttttatcta aaaattcctt aggaaataga aaatttttca
      661 aatatccata aacatgcata tttttaccac gaacttcaac cctatctcca ccattgggac
      721 aaaaaatttc aagcaagctt ttatcagaat ttaccaagct tctagcctga tcaaaatatc
      781 ctatcttaag ctctccgcgt tttatttcac cgctatcttg ttttatttgc cctagaagaa
      841 tttttaacaa tgttgatttt ccacaaccat ttcttcctac gatagctatg cgttcacctt
      901 gtaaaatacg cgttgaaaaa tctttaaaaa gatttttatt gtttatattt ttgcttatat
      961 ttttaagctc aaaaagcatt tttttacgat tgatcgtttt ttctccatta aaatttaaag
     1021 ccgctcttga aatttcaagt tttaagcgtt tgattgcccc aggatttttt ttcgcttctt
     1081 cacgcatttt aaaaatgcgt tcttttcgtc cttcatttct tttaagtctt gctttaaccc
     1141 ctcttctaag ccattcttct tcgcttttta attgctttaa aagagtttca tggctcttag
     1201 caaggctttg caaaatttgt gtttttttct ctaaatagtt tgcatatccg cctttaaaaa
     1261 tactaagctt accctgctct acttctacac acttgtgtgc tatagcgtca ataaaatatc
     1321 tatcatggga aataaaaatc acacacatct ttgaattttt tagcaattct tccaaaaagc
     1381 ttgtcatata tacatctaaa tgattagttg gttcatcaag caataaaata tcaggatttt
     1441 ttagtaaaag tatgcaaagc ccaacgcggc gtatttctcc accacttaaa gtagatataa
     1501 tgcgattttc atactcaagt aaactaaatt cttttaaaac gcgtattatt ttagattcta
     1561 tactccaagc atctttacta tcaatcaaag tcataagcgt atctattttt tgaagataat
     1621 ctttattact aggatcttct tctaattttt tatgcagtat ttcatattct tctaaggtat
     1681 tgtaaatttc tacaagctct tgcttgatgg cttcttttac gcttaaattt gcattaaaat
     1741 caacggtttg tgaaagcatg gctatgcttt ttccattttg tcttattatt ctaccgctat
     1801 ctaaaggaag tgtgcctaaa agcgttttta aaaaagtaga ttttccttct ccatttttgc
     1861 ctataatagc aatcttttct ccctcgtttg cgctaaaatt tacttcattt aaaactattt
     1921 tgtctccaaa tttttttgaa gcttcaatta aatctataag agccattttt tatccttgac
     1981 tgagtttaaa gctaaaacta gaaccataac ctaaagtgct agaaatttca agataacttt
     2041 tatgtatatt taaaattttc tttactaaaa aaagtcccaa accaaaagaa ttatcacttt
     2101 ttacatcaat tttataaaat ttttttgtaa tcaattttat tttatcttct tctatgcctt
     2161 ttccaaaatc ttgcactatt atcttttgat ctcttgccgt taaaatgact tctttttgac
     2221 tatattttaa agcattagaa agcaaattta taatcacttg ctcgattaaa aattcatcag
     2281 ccttaacttt cgtgctttta ccttgcaatg caactctttc aaagcctggg tttttagtga
     2341 ttttttcaca tagagaaaaa agatcaaatt cttgcatctg caaggcttca ctattaagat
     2401 taaaaacaaa attaagctta tgggttaaag cattaagttt aacgctttga cgtgaaattt
     2461 tttctagtaa ttcctttttt aattttttat cttccaattt ctcatctttt agcatctcta
     2521 agctaagatc aatcacgctt aatggatttt taagctcatg agaaatagca gaaatcacgc
     2581 tagcaagctg agtatttttt aaagtgattt tatcgctttg ttttttattt ttttgggtat
     2641 tctttagaat tttatcctta gtttttaaaa gtttctcatt tagtaaatta aattctttaa
     2701 acattccttt ttctaatata acaactttat gatcccctat agaatccaaa aaatccaaaa
     2761 ttttattaaa atttttctct attcttctac ctaacaacaa cattaaaata aaaacaaaca
     2821 gcaagcatac tccaaaaccg attgccattt ttgtccaaaa aagttctaaa tctaaaaaac
     2881 gaggataaac aataataata tatttatatc ctttgtaaat aaagctttta gtgagaattt
     2941 tttttgaatt gaaatttaaa atttctcctt ctttaagatt agaaaaaaaa tcaggatttt
     3001 ttacagaact tattttcata tcattgttta ggataataaa atcagcccta gtatctttag
     3061 caaaatcctt gatattagca tcatttaaat gctctaagag agaaaatttt aaaacatcat
     3121 caaggctttt gattttttgt tcatattgtt ttataagcaa gaaattaaga taagaattag
     3181 taaaagtata aaaaataaac ccaaaaatca aagccaatac aacaaaaaaa actataaaaa
     3241 tatttttagt ttttagcata atttatagcc aataccccta acacttataa tatgatcttt
     3301 tagttttgga aatttatttc taagtcttgt tagagctata ttgattgttt tatcacttgt
     3361 agtatcatct ttccaaacac tttcgcttaa aaattgtcta gtaagcaagg tatttggatt
     3421 ttcaaaaaaa cattttaaaa gctcatggtc aagatttgag atttctaatt tttgattttt
     3481 gtaaaagaat tcataactaa ccaaatctaa aataaaatca ccaaaagata gtttttcttc
     3541 ttctttttta tggcgtttta aaattgcttt aatgcgaagc aaaagctcat tgaaatcaaa
     3601 aggtttacaa acataatcat cacaaccact ttcaaagcct tcgagtaaat cttgatgtaa
     3661 agccttggct gtaagaaaaa taactgcttc tttatatcct tgctctctta aatcttgaat
     3721 tttttctaaa gaatctccac tgggcaaatt tctatcgact attaaaagat caatttgctc
     3781 attatcgagc aaatcttcaa ctccaaaaaa atccgctaaa gatataactt cataaccact
     3841 agattttaac tttaaaacaa gcagttcgtt taaatctata tcatcttcta taattaaaat
     3901 tttaaatttc aacatattgg acaaatacac acgcctctaa ttgttttagt tcatctaata
     3961 cttctttttg aactttttca tcaatcaaaa caacagccaa agcataccca aaaccatctc
     4021 taccaagcct aaaatcagct atgttgatat ttttagctgc caaaacggaa ctgattttag
     4081 ctataactcc tggtatgtct ttgtttttaa aaataatcat ttttcccttt ggcttaaaat
     4141 cagttttaaa gccatttaat ccaactatgc gttgttcatt ttcattaaac actgttcctg
     4201 aaacactgat atttgaattt tcggtgataa ttttaacgct aagtttatta ttataaccac
     4261 tatttggaag agtttcgcaa gataattcaa ctcctttttc tttggcaaca aattctgcat
     4321 taacataatt aattttctct cctaaaattc cacccaaagc accaacagct gcaaaagtta
     4381 gcatagaatt tgcatactca ccaataattc cttcagcctc taatttaata ctttttatag
     4441 gatttttatc aatttgaaca gctaaaaaag ccattttaga aacaagttct atataaggag
     4501 ctacaaaagg tggtaagtct tcagttttaa ttggtaaatt taaggcatta ggataagcca
     4561 cgcctcgtgc tgcacttaat gcttgctcac aagcttctct tgcgatattg tcttgacttt
     4621 ctaaagtatt tgctcctagg tgagaagtaa ctgaaatatt ttcaaagtct aaaagaggat
     4681 gattggttgc gggttcttta tcgaacacat ctataccaag ccatgctatt ttaccacttt
     4741 ttaaaccttc atataaagcc tcttctgtgt ataatcctcc gcgagcacaa tttattaatc
     4801 ttattccatc tttcattttt gcaatttctt gctttcctat cataccattg gtttctttgg
     4861 tttttggtgt gtgaatggta ataaaatcac ttttttctaa aatttcatcc aaattttttg
     4921 cttgttccat atctaaatct gtaatcttag aagcagaaat atacggatca taggctaaaa
     4981 ttttcatacc aaatgcttta gcacggatag ctactcttga acctatattt ccaaaaccta
     5041 taacccctag cgttttattc atcaattcaa tgccatacca tttttctctt tcccattttc
     5101 tttcaatttt taaaaaatta tgagcattga caaagcttct agctgatgtt aaaagatgtg
     5161 ccattgttag ttcaactgcg gcaatagtat ttgcagttgg gacattcatc acaatcactc
     5221 ctcgtttaga acactctgga atatcaacat tatctacacc caccccagca cgcacaagcg
     5281 cttttaattt tttggcatga tttaaaaaat ttacatctac atccgtagaa cttctagtaa
     5341 tcgcaacttc aatatcgctt agcatttgca taagttcatc ttttggaaat tttgcagctt
     5401 ctataagctc aatatcttca gcttttctta gaatatcgac acctttatcc aaaatagcat
     5461 cacacactat aatctttttt ttcataacca aatttccttt acttctgtat ttattttata
     5521 tttttttaat tctttgataa tatcatctat aagtttttca ttacctgtat ccaaaaagat
     5581 ttctggacta tcgccagatt taagaagaaa atacttcaca ttaaaagaat ttaaagtctg
     5641 ccttaagcaa aacatagaat aaatatcata ttttccaact ataagctgat aatatttatt
     5701 tttctcctta agctcgctag tatctgcatc aaaatataag gtaaattttt ctgctgctgg
     5761 ggtaaaatct cttgtaggcc attttgctaa ttcttcttgc catgaaagat cttgattttg
     5821 ggtttgaatg cttggctgcg tatttgtatc tttagcaaat tgtggaatga aatttacatt
     5881 agctttaaat tgccaaagca atgtaaaaac aacagcaagc aaaatgagta ataaaatact
     5941 caaaatgctt attgtaatgt attttttcat taagctagct gatctttaat gatatcacct
     6001 aaagttactt tatcatcatt attgatttca ttaagaactt ctctttcttt cattctaaca
     6061 agatttttga cacttaggcg aattctattt ttcttttcat caataaaaac tatagcagct
     6121 tcaatatcgt cgccaatttt taaattttca agcatagaag tgcttatatc ttctttatga
     6181 attaaagcat caacattttt acttagctct acaaaaacac caaaatcttt aatatcacgg
     6241 atagtgcctt ttacaatatc gccgacttta tgaattttgg catattcttg cactggagaa
     6301 ctgtttaatt cttttgtgct taatgatatt ttttggtttt cttcatctat tttgataatt
     6361 tttaccttga ttttatcccc ttgagagaat ttgtctttac atttatcgtt tctatcccaa
     6421 gaagcatctt cattatgcaa tagaccttca ataccgccaa gtttaacaaa cgcaccaaaa
     6481 gaagttaccg aggtaatttc tccttcaacc acatccgcaa ttttgtaaga tttcataaat
     6541 tcatcaaaag gtctagaaag taaatttctt aaagaaactc ttaagcgtct ttcatttgga
     6601 ttgatttcaa ttacttcaac atcaatttct tgacctttgt tgatataatc ttttggattt
     6661 ttaatatttt tatcccaaga aatttcactg atatgtaaaa atccttctat atcatttcct
     6721 aaatccacaa aagcaccata aggctctata tttgatacta ttactttaat ggtatcacct
     6781 acatcaagag tatcttttat ctcgctccat ggatcgggta aagccgcttt tatagacaag
     6841 gataaatgtt tgcgttcttt atcatacttt ataactttaa ctggaacctt atcaccctct
     6901 ttataaagtg ttccaggatt tacaggtcct ttgtaagaaa tttcgctgta atgaacaaga
     6961 ccatcaacac ctcctacatc cacaaacata ccataagtag taattttttt cacaatacct
     7021 tcaattaaat cttcttgttg tgctacatta ttgatcaatt ctttgcgttt tcttctctcg
     7081 tcatctaaag tttttttacg agaaacaatg atactttgct catctttgtc gattttaata
     7141 attttaactt taaacgtttt gcctataata ttatttgttt ctttgaagcc atattgagat
     7201 tttggtaaga aaaattcaac atcattttca tcaacaacta tcaatccgcc tttatttttt
     7261 ccaactactt ttacggtaaa aatatcatct tgattttctt gatagttttt aataaattcg
     7321 ataacttttt cttttctcaa agctttttta tgagaaagta aagatctgcc accacgagaa
     7381 cccataacag caactttaat accatcgcct acattaaata atagcttaga attgtcatct
     7441 tgtatttcgc taagagctaa aataccttca gattttttac ctatatctac ataaacttca
     7501 tcatttttga tctctacaat cacaccctct gttgtagcct cttctcttga tttatcaaaa
     7561 gcttctaaaa gctgcccaaa atcttcttcc tcaagataat catctacgcc gccttgaact
     7621 tttttgttca cctcgctcat tatggtcctt taaaataatt tttagaaatt gattgatttt
     7681 accttatttt tctttaatta gtgttaagtt tttttatttt tgttaatttt ttttaaattt
     7741 ttgacttttt tattctattt gaaaacattt tttaattaat tttaaatttt tttattttgg
     7801 cgataacttt ttgtatgatc caatcaggag tactagcacc tgcactaatg ccgcaatgtt
     7861 ttttatccaa aaaccattct ttttttaact cttcttcggt ttcaattaga tagctatctt
     7921 cacaattggt ttttgcaatt aaaaaaagtt gttttgtatt ggctgagttt ttacccccta
     7981 caacaaccat aacatcactt ttaagcgaga gttctttaat ggcatcttga tttttaaagg
     8041 ttgcatcaca tatagtgtta aaaactctta cttctttggt tttaagtatt aaaaaattta
     8101 ctatctccat aaaatgctca ggcttcttag ttgtttggct tactacagct attttattag
     8161 gaagttttat attttgaagt tcttttttat ccaaaactac ataagctttt gtacttacat
     8221 aacttttgac tcctttaact tcgggatgat tttcatctcc aaaaataaca acttcataac
     8281 cctccttact catttgctcg caaatttgtt gtggttttgt aacaaaagga caagtggcat
     8341 caaaaatttc tatatctttt tttctcaatt cttctaaatc ttgctttgta ataccatgag
     8401 ttcttataat agcctttttt tcattactta aagcttgtat attttccaaa gttttgacat
     8461 taaaattttt ttgcaaacga gaaatttctt cgttattgtg aataagaggg cctatagttg
     8521 cagcatcttt tatttgttct gcttttttaa tagctctttt aacaccaaaa caaaaaccat
     8581 agttttttgc taattcaata atcaatccta gctcctaaat ttgataaaat ctctataaaa
     8641 tttggaaaag aagtttttat acaatcacta tcatcaatct cgattccaca aagcaaacct
     8701 aaaatagcaa aactcatagc aatacggtga tctccatagc ttttaatttt tgaagatttt
     8761 agttcgcatc caccttctat ttcaaaacca tcatcaagtt ctctagcttc aacaccacaa
     8821 agctttagat tttcaaccat cacagcaatc ctatcgcttt ctttaacgcg taattcttta
     8881 gcatttatta aactagattt acccttagcc aaagcaaaag ctatagccaa agcaggcgct
     8941 tcatctatta accaagcgat attatcttta acttctatgc cattaagctt gctagactcc
     9001 accctgatct caccaatagt ttcaaaatca ttttgagtta ttgtcatttc aagtttggca
     9061 cccatttttt gcaaaatttt atatgcctct atacgagtag gattaagcaa aatatttttt
     9121 aaaataattt gagatttagg taaaataata gctgctaaaa caaaataaaa agccgaagaa
     9181 ggatcattag gaatgattat attttgagct tttaaaggtt tttttaaagg atttatttca
     9241 agacttaagc catcattact aacccttatt ggagctttca tagcctttag catgttttca
     9301 ctatgatttc gactaagaga aatttcacta aaagtgcata cattatcagc cctaaaagca
     9361 gataaaatca tagctgtttt aacttgagcc gaagaaattt cgcttttaaa attaaaagct
     9421 tttaattttt gaccttctat ataaagtgga gctaaatttg cctcatttct tccataaatt
     9481 ctagcgccta tttgagtaag tggtttgctt atccttctca taggacgatt gtttaaatac
     9541 ttatctccac ttaaaacaaa aaaaccagaa attcctgcta aaaatcctat catcaaacgc
     9601 atagcagttc ctgaatttcc gcagtctaaa atacaatttg gagataaaat ttctttaggg
     9661 ggtataattt tgacgcaaga atctttttgt tcaattttag ctccaagatt ttttataatt
     9721 tcaagagtgt ttaaagtatc ttgagctaag agataatttt gagccttatt ttcttcttgt
     9781 gttaaaagcg aaaatatagc aaaacgatga gatatgcttt tatctgctgc tatattttca
     9841 agtatagcat ttacaggagt ttgcaatttg taaattttca tcttaaatca agacccaaat
     9901 ttttaagagt atttaaaatt ttatccatac attcattcac ttgattatct tctagagttt
     9961 tatttatatc cctaaaagaa aaacttatag taatgctata aaattcttta aggttttcat
    10021 cactataaat atcaactaaa cgaaaatttt caagtatttc taaattcaat tcttcgatac
    10081 aatttttaat ctgattgtat tcaaaacctt taggtattaa cacgctaaga tctctagtga
    10141 tagctgggaa tttggagtaa ggcttagcta ttttaaaatc ttgcctgatt aaatctaaat
    10201 caagttcgca aatatatgtt tttggtaaat ctctctcatt ttctattttt aaatgcaaac
    10261 ggcctataaa acctacttta atatccgata gataaatatc tg
//
LOCUS       DARGED010000054        10232 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.054, whole genome shotgun sequence.
ACCESSION   DARGED010000054 DARGED010000000
VERSION     DARGED010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10232
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.054"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(132..1016)
                     /locus_tag="SFZ84_001042"
     CDS             complement(132..1016)
                     /locus_tag="SFZ84_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8203162.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1013..1687)
                     /gene="modB"
                     /locus_tag="SFZ84_001043"
     CDS             complement(1013..1687)
                     /gene="modB"
                     /locus_tag="SFZ84_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG8203163.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(1680..2081)
                     /locus_tag="SFZ84_001044"
     CDS             complement(1680..2081)
                     /locus_tag="SFZ84_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG8203164.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2078..2827)
                     /gene="modA"
                     /locus_tag="SFZ84_001045"
     CDS             complement(2078..2827)
                     /gene="modA"
                     /locus_tag="SFZ84_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8203165.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(2878..3564)
                     /gene="bioC"
                     /locus_tag="SFZ84_001046"
     CDS             complement(2878..3564)
                     /gene="bioC"
                     /locus_tag="SFZ84_001046"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEG8203166.1"
                     /translation="MNFLKAKDYQKHAKVQDFMGLKLCEILKNLRISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(3561..4172)
                     /locus_tag="SFZ84_001047"
     CDS             complement(3561..4172)
                     /locus_tag="SFZ84_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEG8203167.1"
                     /translation="MKISNLIQNENSQELILVFGGLASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLKSFSKITLIAFSMGVCVASRVLKDIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERKNEAKNFIFKDEKDLKTELEKLFEFASKECNENFIW
                     DKIYSSNNDEIFPQNALKNTFSKLIFLNEPHFAFFHFKTWDEI"
     gene            complement(4169..5311)
                     /locus_tag="SFZ84_001048"
     CDS             complement(4169..5311)
                     /locus_tag="SFZ84_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG8203168.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACMICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKNHQILGDAYIISLVLGENQKTIEL
                     AKKLETNGIFAPAIKEPTVPKNTARIRFTLHAGLSKEDLKKVIELL"
     gene            5379..6662
                     /locus_tag="SFZ84_001049"
     CDS             5379..6662
                     /locus_tag="SFZ84_001049"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG8203169.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(6649..7254)
                     /locus_tag="SFZ84_001050"
     CDS             complement(6649..7254)
                     /locus_tag="SFZ84_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG8203170.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(7264..7578)
                     /locus_tag="SFZ84_001051"
     CDS             complement(7264..7578)
                     /locus_tag="SFZ84_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8203171.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(7582..7920)
                     /locus_tag="SFZ84_001052"
     CDS             complement(7582..7920)
                     /locus_tag="SFZ84_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8203172.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            8054..8590
                     /locus_tag="SFZ84_001053"
     CDS             8054..8590
                     /locus_tag="SFZ84_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG8203173.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFEFDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            8587..9132
                     /locus_tag="SFZ84_001054"
     CDS             8587..9132
                     /locus_tag="SFZ84_001054"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG8203174.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            9134..10192
                     /locus_tag="SFZ84_001055"
     CDS             9134..10192
                     /locus_tag="SFZ84_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8203175.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
BASE COUNT         3632 a         1518 c         1481 g         3601 t
ORIGIN      
        1 aaaaatattt agatgaactt gtaaaaaaag ttaaaaatga tggctagtga gtatttcgta
       61 aaatgcaaaa atacttaatt gtatgatttg cgtacactta aagtactcat taaaaaatta
      121 aatttttgct cttatttatc aagttttcct acgatgatag ggttaaaggc ttttatggat
      181 agcaaaagcg tatcgccgat ttttacatct tgataagctt ttagaaattc ctcttcactg
      241 agagtgattt taataatatc ttgatttaaa agcaaggtta aaaccactaa aatatcactt
      301 tttttaattt ctagcaaagt tgcacttaag cgtaattttg cgctgatatt tgaatgagta
      361 aaaaattcat ttttaggaaa atctttaata atttttccgt ttttaagctc taaaattcta
      421 tgacttaact tataaatttc agctagatca tgacttacca ataaagtact tattttaaaa
      481 tactctaaaa tcttggttaa ttcatcttgt aaattggcac gcattttaaa atccaaagca
      541 ctcaaaggtt catctaaaag caagattttt ggttctcttg ctaaagctct tgctaaagct
      601 actctttgtg cctgcccccc acttaaatgt ttaggataaa ttttagctaa attttcaagc
      661 ttcattaagg ctaaaagctc gctaaccttt gctttagaac tagcggcata ggcgatgttt
      721 tcttttatat tcatatttgg aaaaagcgca taatcttgaa aaacaaaacc aatttttctt
      781 ttttgtaaag ctaaactaaa attttttgaa gaatcaaacc aaagttcatt atctacttct
      841 atacgcccca atttaggctt tataagtccc gctatgattt ttaaaagagt ggtttttcct
      901 gctccacttt cgccaaaaag tgcagtaatt tttcctgatt ctatatcttt tttaaaattt
      961 aaatccagtc ttcctttagc ggtattcata ggatgattga tatcaattct tatcattgaa
     1021 aactcatttt tttattgata aaataaagac taaaaagtac taaaaaagaa aaaataaaca
     1081 atataaaagc atattgatgg gctaagctat agtttaagat ttcaagttca tcataaatag
     1141 ctatactagc cactaaagtt tcaccttgtt tatgtcctcc tatcatcatc acgactccaa
     1201 attcacccac agtatgggca aaactcatcg cacaagcact aaaaattcct gctttagaat
     1261 taggtaaaat cactctaaaa agagtataaa ttttactttt acctaaacta taagaagcat
     1321 cgagcaaatt tggattgatc gatgaaaagg cactttgcaa aggatttacc ataaaaggca
     1381 aagaaaaaat caaagaagca aaaacaagac cttcaaaact aaaaaccaaa gaaagattaa
     1441 aatattcttt taaaacttgc cctaaaaaac tattagccga aaaagttaca agcaaataaa
     1501 atcccaaaac actaggaggt aaaatcaaag gcaaggaaat aaagctttga aggattgttt
     1561 taaaaggaaa acgcacaaaa cttaacaaat aagctaaaaa aacaccgata aaaaaaagga
     1621 taaaagtcgt gataaaagca agtttaaaag taagataaag ggtttgtaaa aaagctggat
     1681 caagcactat gactccttaa tacaatatca tttgctttta caaaacaaag ccattcttga
     1741 ttttcacaaa tttcaagttc taaagctttt tctttggtga taatactaga aagttcatta
     1801 cctttaaaat caaaaaatac ctgatataaa agtttgcctt ttttaatttt tgtaatttta
     1861 gctaaaaaag aattttcaac acttaaaaga gttttgcttg cgctaaaaca aagctcatgc
     1921 tctttaaaaa gaagttctac actcacacca atttttaaat tttctaaaga ttttaattca
     1981 agcattaaaa cactaaaaat cacttcttta gaaagtattt taacaataac tatatcctct
     2041 tgatttaaaa gctcacaaat ttgtcctttt ataaggttca tggtgtgcta aatccgtatt
     2101 ttttaaaaat ttcttttgct tttgaagagc caataaattc gttaaattca aaggctaatt
     2161 ttttatcctt agcgtatttt gtgatgacat aactttgctc taaagggcta aaatactttg
     2221 catcaattat aacagcctta cccttaggat gattgataga agaaactaaa gaataagcca
     2281 ctatagctat atctgaattt ttgctatcta catgtaaaac aggcactgag atattttcgc
     2341 ctaaaacgat tttatcctta agaagctcat ttaaacccaa attttcaagc acttctttag
     2401 ctgctactcc ataaggagct actttaggat tggctatgct tagatgcgtg attttgtttg
     2461 ccttttcttt taaattttca acgcctcctt ggagtaaatt ttcatccaag ctatacaaag
     2521 ccaaaactcc caaaacataa acttttggtt ttattaaagc atttttatca tcataaatag
     2581 ccttagcata tttagtatcc gctgaaaaaa agagatcaaa ttctcttcct tgttttaaaa
     2641 gctcataata ttttccagaa gcaccaaaaa ccaattctat tttatcttct ggatgtgttt
     2701 tcaaaaactc atctttaact tcactcatcg cctttgaagc tgaagaagct acaaaaatac
     2761 ttaaattttg cgcatttaaa cacgaaacaa aaagcaaaat cccaaaaaat actacaaact
     2821 ttttcattta gttttccttg tgtaaaaatt taatttttgg attataacac aaaaaattca
     2881 ttttatatca tttttgcata aaataaatac aggatgataa gtgagtttgt tttgaaattt
     2941 ttcttcaaat tcttttaaaa aacctttatt taaaggataa aatcctaaag aatttactcc
     3001 gcttaatttt aaatgtctaa aaacatctaa agcattatca aagcttaatt ttatgagttc
     3061 ttgagtaatt tttacttcat taaaatagac tttaaaaatt tgctctaatt catttaagct
     3121 aaaataattt aaaccaaaac ccgtgctttg cttgatttct tttaaatttt gctctgcaaa
     3181 agtagaaaga agtaaaatcc cattttgatt tagcatatct ctaagacttg gtataatgcg
     3241 ttttaaatca agccattgca aagttgcatt tgaaacaata agatcaaatt tctctttact
     3301 taaatcctgt tttgcaattt cgttcatatc aaaaattaaa atactagaat tttctttaaa
     3361 atctaaaata tcgtttttta aatactcatc aaaagtaata aaattttgaa gttttttgct
     3421 caattcaccc ctgccacaac caaattcaaa tactttttca aaatgtgaaa ttcttaaatt
     3481 ttttaaaatt tcacaaagtt ttaaacccat aaaatcttgc acttttgcgt gtttttgata
     3541 atcttttgct tttaaaaaat tcaaatttca tcccaagttt taaaatgaaa aaaagcaaaa
     3601 tgtggctcat ttaggaaaat aagctttgaa aaagtgtttt ttaaagcatt ttgaggaaaa
     3661 atttcatcat tattgcttga gtaaattttg tcccaaataa agttttcatt acactctttt
     3721 gaggcaaatt cgaaaagttt ttcaagctcg gtttttaaat ctttttcatc tttaaaaata
     3781 aagttttttg cttcattttt gcgctcttta aataaagatt ttttaaaagc cgtgagatca
     3841 aattttttaa tttgcttagc aaaaattgca ggatgaattc cttttaattt atctatgcca
     3901 aaaggagtgc cattgatagc tattttttgc gaaaactcta tatcttttaa aactctactt
     3961 gctacgcaaa ctcccataga aaaagctatg agagtgattt tagaaaaaga ctttaaatca
     4021 aatttaaagt ctaaattttc ataatcataa accaaaacta catttttatc gctttttaaa
     4081 tgtgcaaaat ggctaggatg tgaagctaaa ccgccaaata ctaagataag ttcttgtgag
     4141 ttttcatttt gaattaaatt gcttattttc ataaaagttc tatcactttc tttaaatctt
     4201 ctttactaag tcctgcatgc aaagtaaaac gaattctagc tgtattttta ggcaccgtag
     4261 gttcttttat agcgggtgca aaaatgccat ttgtttcaag tttttttgct aattctatag
     4321 tcttttgatt ttctcccaaa accaaggaga tgatgtaagc atcgcctaaa atttgatgat
     4381 ttttttctat gagttgattt ttaaaaaagt tgcctatgat ttgtaatttt tctctttttt
     4441 cttttagctc gctcattttt tcaaaaataa attttgtcca agctatattg ataggaggca
     4501 gcgctgtaga ataaataaaa gctctagctt tgttgataaa aaagctttta taaagattat
     4561 tacaaatcat gcaagcaccc atagaagcaa gagccttgcc aaaggtaaaa actataaaat
     4621 caaccttttc ttccaaattt aaagctttaa caagtcccaa gccctcctca tcaaagcaac
     4681 ccacgctgtg tgcttcatct atataaagct taattttatc ataacgcctt ttaagctcac
     4741 acagagtttt aaaatcgcta aaatctccat ccatactaaa caaagcttcg cttaaaacga
     4801 tgatattttc ataattttca taatgttttt ggattaaact ctctaaatga ttcatatctt
     4861 tatgatgaaa acgaaaaaaa tcagccctgc caagtcttaa gccatcaatc atacttgcat
     4921 gaataaattt atcggttaga aaaagcgtct tagaaacgct agaaagtgct gctatacaag
     4981 agatatttag atgatagcca ctattaaaat gtaaaatttc cttatcttta aatttagtct
     5041 ttaaaaaact ttctaatttt tcataaattt caaaatttcc actcaaactt cttgaactcg
     5101 aacttgaaaa aaacaaatct tgttctttta gggtgtttaa aaactcagct tttaactctt
     5161 tggaagacgc caaataaaga taatcatttc ctactaaatt taaaagtttg tgatcttgct
     5221 tataaacaaa tttattttca tgttttaaag gtgttagagt tcttagattg tgattttgct
     5281 ctagatcttg caaaattttt tcaagcttca tttttttcct gtaaatttaa aaatttaaag
     5341 tattattttg ccaaaatatt tttaaaaaag aagttataat gcaaaatcaa atcttaaaaa
     5401 atctcgattt aaaacacatt tggcaccctt gcacacaaat gaaagatcac gaaaccctac
     5461 ctttaattcc tataaaaaaa gcaaaaggtg tatggcttta tgattttgat gataaagctt
     5521 atatggattg tgtgagttct tggtgggtca atctttttgg tcattgtaat gaaaaaatcg
     5581 caaatgccat taaaaaacaa gttgatgagc tagagcatgt gatcttagca ggctttacac
     5641 atgagcccat tatcaagctt tctgcaagac tttgcgaaaa agtaggcagg aattttaaca
     5701 aatgttttta tgcagataat ggatcaagtg ctattgaagt agcacttaaa atgagttttc
     5761 attatcattt aaataaggga gtgaaaaaaa gtaaattttt atctttaagc aattcttatc
     5821 atggtgaaac cttaggagcc ttaagtgtgg gcgatgtagc gctttataaa gatacttaca
     5881 aagccttgct tttagagtgt ttaagcacgc ctgtgccaca aggcaaagac tacactaaag
     5941 agcttgaaat tttaaaagat attttagaaa aaaatgcaag tgaaatttgt gcttttatac
     6001 ttgaaccctt ggtacaatgt gcaggaaata tgcatatgta tgaagcaggg tttattgatg
     6061 aggccataaa gctttgccat aaatttggag tgcaagtgat ttttgatgaa attgcagtgg
     6121 gctttggacg cacaggaact ttgtttgcct tacatcaatg caaacaaagc cccgatttta
     6181 tctgcctttc aaaagggata acgggtggat ttatgccact ttctgtagtg cttacaagag
     6241 atgaaattta taatgctttt tatgatactt atgaaagcca aaaggctttt ttacattctc
     6301 atagctatac gggaaatacc ttagcttgcg cggcagcaaa tgcggtttta gatatctttg
     6361 aggatgaaaa tattttagta aaaaatcaaa ttttaagcga gtttatcaaa aaagaatttt
     6421 caagacttga aaaatttgac tttttgggta attttagaac ttgcgggatg atcagtgctt
     6481 ttgatatttt aagcaccaag tataaacgcg taggactttt tgtatttcaa aaagccttag
     6541 aaaaaggttt gcttttaaga cctttagcaa atacgattta ttttatgcct ccttacatca
     6601 tcacaaaaga acaaatcgtt tatgtactag agagtttaga gcagattttt aaggaatttt
     6661 aagttgtaaa atttcttgca tttgctcttt aaaatcttta tttaaaatgc tattttcatc
     6721 aaaaaaatca agattgatta taggaatttt tgcataattt tttataaaat catcttgtaa
     6781 gatatctttt ttacccatca ttacaagggc taaaagattg atatttcttt gctttaaagc
     6841 ttcaatgcta agcaagatat gattaatgct tccaagatag tattttgcta ccaaaatcgt
     6901 agggtgtttg aaaatattca caaaatcaat catagtgtaa ttttcatcca taggagaaaa
     6961 aagcccaccc gcaagctcaa taagtaggtt tttgcttttt ggtaaaatga tatctaaggc
     7021 tttataatca agcttttctt tgatttttcc aagatgagga gaagctggag tttgcaaaaa
     7081 aataccttct ttaaaaatct ttgtttttgg gctaaatttt gcaataaact cactatctgt
     7141 tggagttcct gcttgaatga gtttaaaata atcatagtta aaattcgcac aaaaagctgc
     7201 actaaaatgt gtttttccta catcagtatg tattccactt acataaattt gcacaaaaaa
     7261 tcctcaagaa agaaatttta aacccgctgt acaagtaata atcacagcga ttaaaaaaag
     7321 tttcaaaaaa cttttacttt ctttataaaa aagcactcct atcattaccc caccagcggt
     7381 tccagctcct gtccatatag cataagcaac gctcatagcg atattttgca tacttaagct
     7441 taaaaaagta aaagaaaatc caaaacacac tatcaaagct aaaaggtaaa gcttgttttt
     7501 agtgcttaca agttctttca tgatcaccac gccaaaaatt tcacaggcag tagctaaaaa
     7561 caaataaaac cattccatag tttaagcttc cttgcttacc catttaaggg ctataatact
     7621 taaaagtaaa attgctataa gcacaagttt aattatagaa acagcttcgt taaaaataaa
     7681 catttcattt aaaaccaccc caatagtgcc aatgcctaca aaaacactat aagtaatact
     7741 tacttcaagt ctttcgcaag cttttaaaaa gcaagtaaaa gaaatacaaa ccccaatggc
     7801 tgttaaaata tactgccaaa tttctgtaga atatttaagt ccacttaccc aaaagcactc
     7861 tataattcca cctaagatta ttaaaaacca agctatatta atattgaatt tttcattcac
     7921 atgaagcctt aaattaacat aatatttgta aaacaaatta tatcttaaag aaattaaaag
     7981 aagctataaa tttacttttc cataagccaa aattagatat aatcaaagct cattttttaa
     8041 gaaaggataa aagatgttag aaggtatcgt tagagagagt atcggtagaa aagctgctaa
     8101 agctttaaaa agagatggtt atctaattgc aaacatctat ggaaaaggat tagaaaacat
     8161 caatgccgct tttaaagtaa atgagtttat taaggaagtt cgtaaaaaaa ctactttaat
     8221 ttttgatgta aaagtaggtt ctcaaacttt aagcgttgta gttgtggatt atcaaaaaga
     8281 tcctgtaact gcagaactta aacatgtgga tttaaaagtt gcgcaaaaag gtgtgatttc
     8341 taaatacatg gttccagtta aaatcacagg aacagctata ggtcttaaaa ataaaggtgt
     8401 tttaattcaa tcaaaaagaa gattaaaagt aaaatgtgca gctgaaaatt taccaaattt
     8461 cttcgaattt gatgtaagta aacttgatgt gggtgatgct ttacttgttc gtgatattgt
     8521 agttcctgcg ggagtaacta tgattgatgc tgatagagta gcggttgtag gtgtagaaaa
     8581 agctagatga ttttagtcgt agggcttggc aatataggcg tagagtatga aaatacccgt
     8641 cataatgtcg gttttatgct aattgactta cttttaaaag aaagcaattt tacaaatctt
     8701 acaaactcta aatttaaagg agagcttttt aaaataggtt cttctttact tcttcttaaa
     8761 cctagtactt atatgaataa ttcaggactt agcgtaaaag cagtgaatga tttttataaa
     8821 tgcgaaagaa tgatagttat ccatgatgat atagatataa atttaggagc cttgcgcttt
     8881 aaaaaaggcg gttcaagtgg tggacataat gggcttaaaa gcatagatac tttatgtgga
     8941 aatgactatg aaagagtgcg tataggagtg ggaaagggtg aaaatgtgat ttcccatgtt
     9001 ttaggtaaat ttaaatccga agaagaaata actttaagca aagttttaga gcatgcaaaa
     9061 aaagctttgc ttgagcttat tgaaaatgat gatttgtctg ctatatcatc caaatacagc
     9121 ctaaaggctt aagatgtgga tattttttcg ttttatttca gggatttatt taaaaaattt
     9181 ttttattata tttttttctt tacttggttt ttattgcggt attgatttgc tcttaaattt
     9241 taaagatcta ccaaaagccg caaatcttga tttgctttat gttatgtttt tatctttttc
     9301 ggcagtgcct tatgtattac ccatttcttt gatttttgct ttggtagttt ctttgatttc
     9361 tatgatcaga gcaaatgaat ttgtaagtct ttatgcgtta ggactgagta gaaattatgt
     9421 tattttattt ccttttttat gggctttatt tttttgttgt atttatatag gattgaattt
     9481 tacttctttt gcttatgcaa atgattataa gagaaatatt ttgaaaaatg gcactattat
     9541 gaatcaaagt ggagaagtgt ttttgaaatt taacaataat tttgtttata tttcaaagat
     9601 aaacaatgga caaaatagtg ctcaaaatat aaaaattttt aatattaatg atttaaattt
     9661 aagctctttt gtaagtgcta aaaatgccca ttttgaaggt gaaagctgga ttttgcgaga
     9721 tggtaatatt acattattac ctaaaaatta tgaacttgct aatgatggtt taaagataca
     9781 agatttctcc gagcttaaat cacttgaggg ttttaaacca aagattatag aaggggttgc
     9841 tagtaatagt gattattcaa tatctgacgc acttgaaagt tttgagcttt ttaaggcgca
     9901 aaatgtcaat acagatactc ttaaaatcaa tctttataaa tttgttttta ctcctttttt
     9961 tgcaccattt ttaatgctta ttatgtatta tttttttcct gtaatagcaa gattttttaa
    10021 tcttgctttt gtaactttta tagcttttgt agtgactttg atgatttggg gagtcttgtt
    10081 tttgcttact agattaagcg aaaatagtgt gattgcaagt gaaattggca ttgtagtgcc
    10141 tattataatt ttgggttgtt taagtgctta tatgtattat aagcatcgat aaattaagct
    10201 ttgtgtagta aaattataaa aattaaaggt ta
//
LOCUS       DARGED010000055        10103 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.055, whole genome shotgun sequence.
ACCESSION   DARGED010000055 DARGED010000000
VERSION     DARGED010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.055"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..570)
                     /locus_tag="SFZ84_001056"
     CDS             complement(<1..570)
                     /locus_tag="SFZ84_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG8203176.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHP"
     gene            complement(572..2077)
                     /locus_tag="SFZ84_001057"
     CDS             complement(572..2077)
                     /locus_tag="SFZ84_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG8203177.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKKACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            complement(2074..2601)
                     /locus_tag="SFZ84_001058"
     CDS             complement(2074..2601)
                     /locus_tag="SFZ84_001058"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG8203178.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(2637..3221)
                     /gene="clpP"
                     /locus_tag="SFZ84_001059"
     CDS             complement(2637..3221)
                     /gene="clpP"
                     /locus_tag="SFZ84_001059"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG8203179.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(3221..4555)
                     /locus_tag="SFZ84_001060"
     CDS             complement(3221..4555)
                     /locus_tag="SFZ84_001060"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG8203180.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RLGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            4698..5270
                     /gene="folE"
                     /locus_tag="SFZ84_001061"
     CDS             4698..5270
                     /gene="folE"
                     /locus_tag="SFZ84_001061"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG8203181.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKDILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGIQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5270..6655
                     /gene="fliI"
                     /locus_tag="SFZ84_001062"
     CDS             5270..6655
                     /gene="fliI"
                     /locus_tag="SFZ84_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG8203182.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISSTSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVTKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDAPNTPLLPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(6658..7995)
                     /locus_tag="SFZ84_001063"
     CDS             complement(6658..7995)
                     /locus_tag="SFZ84_001063"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG8203183.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYIVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(7997..8725)
                     /locus_tag="SFZ84_001064"
     CDS             complement(7997..8725)
                     /locus_tag="SFZ84_001064"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG8203184.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTIPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(8788..9969)
                     /locus_tag="SFZ84_001065"
     CDS             complement(8788..9969)
                     /locus_tag="SFZ84_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEG8203185.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLNEKHISLENLKKLRNTINSKGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
BASE COUNT         3256 a         1775 c         1428 g         3644 t
ORIGIN      
        1 cggatgaaaa tccgagtatt tgcggttcat attagtacgg atttgtgcgt attcggcacg
       61 ccctttttca tcgataagtt gttcggtgat attgattaaa gctcttaaat aatccttact
      121 taaaatatct tcttttttac tctcatcttt atctaaataa aaaaattcac taaaggcatt
      181 tacataagat tttatagact tttcaagccc cattcctata acttgttttt tattttctct
      241 taatttttga atgagtgaag tataatcact atcgcttgaa acaataacaa aaatatctat
      301 atttttttca taaaatatgg acataatttc agtgattaaa tacatatcgc ttgagttttt
      361 gttggctgca aaattaaatt gttgcatagc gattaaagaa tattcagcaa tttgctctct
      421 ccaaccttgt atattttttt gagtccaatc cccataaatg cgtttaatga taacctctcc
      481 gtaatctgaa gcgatatcaa aaatactttt agcgtatttt gcagggatat tttctgcatc
      541 tataaagata gctatacttt tattttccat tttaattcct tgctctaaag cttaaagctt
      601 ctaaaatatg ggttttgcta atattaagac tttgttctaa atccgctata cttcttgaaa
      661 cttttaaaat tttattaagc gatcgcaaag aaagattata acgtgaaatt gctaaatcta
      721 gcgtatcttt ggcatctttt tccaatacac aaaaacgact taaatcttca tcttttaatt
      781 tcccattaaa ttctttttgc ccccgttttt tactaaaaat aaaagcttgt aaaatttttt
      841 cactcatttc tttagaactt atactcgttt tatcatcctt gctgatctca tccatagcta
      901 cataaagatc aatcctatcc ataataggag ctgaaatgtg atttttgtat tttttaatct
      961 cattttcact acaaacacaa gaaagatttt tggagaataa atttccacaa ggacaaggat
     1021 tttgggcagc tataaagcta aattttgttt cataagtgat tttagaattt actcttgaaa
     1081 tatgaatttt atgatcctct aaaggttctc ttaaactctc tatgatttgc ttgttaaaat
     1141 gtggaaattc atcaaaaaac aatactccac catttgcaag tgcgacttct ccaattctag
     1201 cattttttgt tcctccgcca aaaatacttg ctcttgtaga agtatgatga ggatgacgaa
     1261 aagcacgaat tttagtaaat tcacaatctt ttgaatctaa agacatataa gcattttgca
     1321 ttaaaatttc atttaaactt tgaggaggca tgatataaac aaggcgttta gcacacatac
     1381 ttttaccact tcctggactt ccttcaaata agatattatg catacctaaa gcagctatca
     1441 tacaagcttt tttggctttt tcctgccctt tgatgtcttt aaaatcaagt ttaaaatcca
     1501 tattttgtaa aaaaatttca ttttctattt gtaaagggtt tgcaaataaa ggatgattgt
     1561 gagaaaaacg aaaattttca taattttttt ctttaaaaaa ctctattgct tcatttaaat
     1621 tttcaagtcc ataaacctct aaatttggta tcatggaagc tttttgtgct atactttttg
     1681 gaacaacgat cttagctttt ttaattttag cagagagaaa caaaagcaaa gaaaaaagct
     1741 catttgtgct tttaatactt ccatcaagtc ctaattctcc tactacaaaa aagtcatcta
     1801 attcttcatt ttgcaaaagg attaataaag cgatagccaa atcaaaatgc gatccctttt
     1861 ttgggatgcc tgaaggacta agattgatag tgattttttt agcaggaaaa gcaaaatcac
     1921 aacttaaaag tgtggctttg atgcgttcga cactttcctt aatcgctgta cttgcaagcc
     1981 ctactatgct taaatttggc aaacctcttg taaaagtgga ttctacctct ataatgtcta
     2041 agccttcatg aaagcttatg cactttagtt ttttcatttc tcttttttat gatttttctt
     2101 ctttttctta aattctttat cgaatttttg acgcttagca aaggaaattt tttctataaa
     2161 taaatgtcca tttaaatgat cattttcgtg ttgaatagcc acagctaaaa aaccttttgc
     2221 ttcaagttct ttaaattctc caaagcgatc ttgatattta agcaagatat gattatagcg
     2281 tttcacttct tcaaaaaaat ctggcacact caaacaccct tctgtacaag tgatcatttc
     2341 ttcatctaaa ggaataattt caggattgat aatctctagc aaatcttctt ttttttgttc
     2401 atcgttttca tcaaaaatat ttacaagtaa aacacgcaaa ggaatatcca cttgaatagc
     2461 tgctaaacct actccattac ttgctatcat agtttcatac atatcatcaa gcaaggtgtg
     2521 aagttctgta tcaaatttat ttacaatttc agagtttaaa aaaagtctag gattgggata
     2581 ggtgataatt tttctaacca ttaaaaaacc tttgttttaa atgatctcca aagaaatcat
     2641 ttaaaacttt tttccaaaac cttatcaatc agcccatatt ctttagcttc ttgtgctgac
     2701 atgaaaaaat ctctttctgt atcttttgct atttttgcaa ctttttgctt agtatttttt
     2761 gccaaaatat cattaagtat agttttgagt cttaaaattt ctttggcttg aatttcaata
     2821 tctgtggctt gacctctagc tccacctaaa ggttgatgaa tcataatacg tgaattaggc
     2881 aaagcaaaac gttttccttc tgcgccacaa ctaagcaaaa atgctcccat agaagcagct
     2941 tgtcctatac aaatcgtaca aacatcaggt ttgatatagt tcatagtatc ataaatacta
     3001 aaaccacttg taattacacc acctggagaa ttgatataaa gataaatatc ttttgtagga
     3061 tcttcagctt ctaaaaaaag aagttgtgct acgatagaag cggcaagttc atcatgaatt
     3121 tcaccactta gcataataat tctatctttt aaaaggcgtg aataaatgtc ataacttctt
     3181 tcaccacgac tagatttttc aataacataa ggaataaaca ttatttatct tctttctctt
     3241 ttttgctcac tttttccgat ttttctgttt ttggtataaa aatatcatta aaaagttttt
     3301 cttcaattaa agccattttc acagcaggca aagctccttg ttttttatag ttttctaaat
     3361 gctcttttgg attcatacca tagcgatatg cttcaaaata aatcgcttga atcaattctt
     3421 gatcatttac ttcaatctta cgcaattttg caagttcatc aatgataaaa gtaagtttta
     3481 cacttttttg tgcttcttct ttaaaagaat cacgtttttc ttgatatttt tctttacttg
     3541 ctttaagctc ttcaatttct ttttcgctaa aagtattaaa agccgcacgc atctgcatat
     3601 cagtttcttg ttctactatg cctttaggta aatcaaaatt atatttttca atcaaagcat
     3661 ctgcaaattt gccttttaat tcatcattta caagtttgaa aagtttttca tttttgattt
     3721 gctcttttaa tttttcatct aaaacttcaa cactagcttt ttcttctcct ggtaaaagtt
     3781 ttttaagcat ttcatcatca agttctggaa ttttaagctc ttgaatttca tgtagtttta
     3841 ctttaaatac tgcatcttta cccgctaaat gcgctgcgcc gtattcttta gggaaagtta
     3901 ctttgatatc tttttcttca cctattttca ttcccaccat accatcttca aaacctggaa
     3961 taaattgctt agaaccaatt tctaaaacat aattttcagc tttaccacct tcaaaagctt
     4021 tatcatctac aaaaccttca aaatcaaatt ttgcaaaatc accttctttt aaagctcttt
     4081 ttgtttttat agcttcagga gtagcaaaac gctttaaaag ttcatctttt ttctcatcaa
     4141 tttctttttt acttactttt ggagtttgat attcagggat gagtttttca taaccctcaa
     4201 gtttgatttc aggtttaaaa gaaagtatta attcagcaat aatttctcca tctttacgat
     4261 caaatttttc aaaatatggc tcacctacaa gctctttatt ttctttttta agttcttgta
     4321 aagcgctatt tacagcggat ttaaaaagat tttgttctgc atcttgagtg agctctcttt
     4381 catatctttt aagtacggca cttacaggaa cttttcctag tctaaaccca tccattttta
     4441 cacttttaga agcttttttt gctaaatttt ctacttcact tttgatcatt cctgaaggaa
     4501 tttttacact agcagtcgca ttaacagaat ctagttgctt tgcctttact tccatagttt
     4561 tttccttata aaataaaatt tgccttcaat gatagcaaat ttttccttat tacttgcata
     4621 aaattttaaa gtaatttatg ataaaattgc aatattacat tattattaaa atataaaaaa
     4681 tatttttgga gaaaaatttg caaaaaaaat ttgaagattg tgttaaaacc atacttgaaa
     4741 ttataggaga aaatccaaat cgtgaagggc ttattaaaac accaaatcgt gtttttaaag
     4801 cttatgaatt tcttactagt ggttatacgc aaaatgtcaa agacatttta aatgatgctt
     4861 tatttgaaag ctctaataat gaaatggttt tggtgcgtga tatagaattt tatagtcttt
     4921 gcgaacatca tcttttacct ttttttgggc gtgctcatgt agcctatatc cctaataaaa
     4981 aagtagtagg tttaagcaaa attccacgcc ttgtagaagt gtttgcaaga agacttcaaa
     5041 ttcaagaaca acttactgaa caaatcgcac aagctttaat ggaaaatgtt gatgcaaaag
     5101 gtgtgggtgt agtcatagaa gcaagacata tgtgtgttga aatgcgtgga atacaaaaag
     5161 ctaattccac cactacaact tcagctttac gtggaatttt cttaaaaaat gaaaaaacca
     5221 gagaggaatt tttttctctc ataaactctg ctaaacaggt aagattttaa tgaatcttga
     5281 aaaactacgc tccaaacttg gtaaagaaaa tttaagtgct atctttggag agattacaaa
     5341 aatttcttct acgagtatag aaattcgtgg gcttaaaaca ggggttggag atatagtgaa
     5401 gctagtttcc aatgaaaatg aaaatttaaa cactctagct atggtcgtag aaatcaagga
     5461 acaatttagc tatttaagcc ctttttcttt tatagaaggt ttcaaaatag gcgatcgtgc
     5521 tttcataagt gatgcaggta tgcaaatagg cgttagcgat gaacttttag gcagagtagt
     5581 agatcctttt atgcgcccaa aagatggtaa aggagctata gaagtaacca aatatatgcc
     5641 tataatgcgt gcacctattg atgccatgaa aagagggctt atagaagaag tttttcccgt
     5701 gggtgttaaa accatagacg cgcttttaac ttgtggtgta ggacaaaaac ttggtatttt
     5761 tgcaggaagt ggggtaggaa aatccactct tatgggaatg atagttaaaa attccaaagc
     5821 tcctataaaa gtagtggcac tcataggaga aagggggcgt gaaattcctg aatttataca
     5881 aaaaaattta ggcggaaagc tcgatgatac agtgattatt gttgctacaa gtgatgatag
     5941 tgctttgatg cgtaaatacg gtgctttttg cgcaatgagt gtggcagaat actttaaaga
     6001 acagggcaaa gatgtacttt ttatcatgga tagtgtaacg cgttttgcta tggcacaaag
     6061 agaaattgga ctagctcttg gagagcctcc tacaaccaaa ggttatccgc caagtgtttt
     6121 aagtcttttg cctcaactca tggaaagaac cggtaaagaa gaaggtaaag gcactataac
     6181 agcctttttt accgttttag tggatggtga tgatatgagc gatccaatcg ccgatcaaag
     6241 tcgttctatc ttagatggac acattgtttt aagtcgtgaa ttaacagact ttggaattta
     6301 tcctcctatt aatatacaaa actctgcttc aagggtgatg agtgacatta taagtcctga
     6361 acataaactt tgggcaagaa aatttaagcg tttaaactcg cttttaaaag aaaatgaagt
     6421 attgcttcgc atcggtgctt atcagaaagg aagtgataaa gaacttgatg aagctatttc
     6481 taaaaaagaa tttatgcaaa aattcttagg acaaaatcct gaagaaagct tcgaatttaa
     6541 tcaaacttta gagcttttaa gtcaaattga tgcaccaaat actcctttgc taccaactca
     6601 aaatataaat gtaggaagtg caagtgcaac cttgcctaat cctaatttaa aataaaatta
     6661 tttaataaaa taatctccat caaaactgat taaagaatat tttctttcat cgcctatgct
     6721 ttgagttagc tcttctatgc ttaaaaaact tagtgtatca gcttctacat attcacgcac
     6781 ttcttcagca tttttatttg cgctgataag ttcttcaaaa gttggagtat ctataccata
     6841 agtatcagga aatttgatct caggacaagc tatggcaaga tggattttac tcgctcctgc
     6901 agcacgaagt aaggaaatta tttttttaga agtagtgcca cgcaccaagc tatcatcaat
     6961 gactacgatt tctttgcctt ctaaaacttt acgcatagga ttaagcttta attttacttt
     7021 taaatttcta agctcttgag ttggctctat aaaagttctt cctacataat gatttcttac
     7081 tattgccatt tcaagaggga tttgtaaata ttgagcaaaa cctatagctg cacttactcc
     7141 actatctggc acaggcacga caaagtctgc tttataagca aattttttag ctaaagcttc
     7201 gcccattttt ttacgcactt catacacgct tttaccttct actatgctat caggtctagc
     7261 aaaataaatg tattcaaaag cgcaaattct aggagtttga gaaaaaagtt ctatgctttc
     7321 aaatttatca tttccctgag taaaaataag catttcccct ggtttaacat cacgaataaa
     7381 ttcagcctct ataagatcaa aagcacaagt ttcactagca actatatagc ctccatcttt
     7441 taaacgccct aaagacaaag gacgcacccc atgaggatct cttacaatat aaagtttatc
     7501 tttgcttgct aaaacaaaac aataagctcc tatacattct tttaaactct caataaatct
     7561 atcttttaga ctttcttgct tacttcttgc gataagatga acaacatttt ctgtgtccat
     7621 attggtttga aaaatagccc catcttgaat aagtcttgat cttacttctt ctttattgac
     7681 taaatttcca ttatgcgcta aagcaatatc acctaaaacc gaagtggctg ctatgggttg
     7741 ggcatcgttt aaacttgaat ttcctgctgt agaatagcga ttatgcccta tagcgatttc
     7801 accttctaaa gtttttaaat tatcgggatt aaaaatttga ctcacttcac ctttagcttt
     7861 aatagtctta atatttttac cattactcac actaatacca cttgcctctt gcccacggtg
     7921 ttgcatagca aaaagcgcat aatacgcata agtactagca ttttttgaat taataactcc
     7981 tacaactgca cacattttaa attcctaaaa aatcattgat tgaatacatt tttgcttctt
     8041 gcttactaag ccaaatagcg attttaatcg cacctttagc aaaagtcgcc cttgaagtag
     8101 cggtatgatt aagttctaaa aattctccat cttcataaaa acctactgta tgacgtccta
     8161 ctatatcgcc accccttaaa ctcatcacgg caatctcatc tttgcttctt tcacctataa
     8221 tgccatctct tccacttact cttacttttt caagttctaa atttctagct tttgctacac
     8281 tttgagctaa agtcatagct gtaccacttg gtgcatcttt tttatggcga tgatgcattt
     8341 ctaaaatttc tatatcaaaa tttcttagca tttgactggc tttactagca agatagttta
     8401 aaaccgcaac acctaaagac atattggtcg cataaaaaat cggcatcact tcactagcac
     8461 tttgcatcaa atgtaaaatt ttctcatcaa gccctgttgt acctattacc aaaggtttag
     8521 gtatagttct tgcataattt aaaagctcat gagttccact tggggaagaa aaatcaataa
     8581 tcacatcgct tttttcaaaa agctctccta aatttccacc cttatcataa agtatcgaaa
     8641 tttgtgcttg tgtttcgctt tttaaacatt cttcaatctg ttttcccatt cgtcctttag
     8701 cgccataaat tcctatttta atcatctttt tccttgaaaa taaaatattg attttagcat
     8761 ttattttgta aattttaaat aataaaatta agctttatgg ttttttaatt tatataaatt
     8821 atctaacaat tttgcttctt ctcctaagcc cttgctatga taaaatttta aatttttact
     8881 aagatatttt tgctctaccc agccaccaaa atcatgtgga taaagatagt tttgtttttc
     8941 ttgatgattg ttgttaagat aattaggtat ttctaaagct tcattatttt ttacatagtt
     9001 taaagcttca ttgatagctt tgtagcttgc attagatttg attgtgcttg ctaaataaac
     9061 tacgcattgg gctaggataa ttcttgcttc aggataacct atatttttaa cagcctctag
     9121 agtcgaaacc gctaaattta aagcatttgg atcggcattt ccgatatctt cacttgaaaa
     9181 aatcaccaaa cgcctagcga taaaatccgc actttctcct gcatcaataa gtcttgcaag
     9241 ataataaata gctgcatcaa cgtcacttcc gcgtaaactt tttatcattg cacttgctaa
     9301 aatataatgt gtatcttttg agctaacacc tttactattt atggtgttgc gaagtttttt
     9361 aagattttca agactgatat gtttttcatt taaaaccaag acaaattcaa gcaaatttag
     9421 catagctctt gcatcagcac ttttcagtag aaaatcttta gcttctttat caatactaaa
     9481 tttcattttt tcttgtacac gcaagagtaa agtttcaagt tcctttaccc ctaaagattt
     9541 aaattcaaaa agcatggaac gacttcttat accagaactt agaacaaaat agggattttc
     9601 agtgcttgcg ccgattaaaa ttaaacggta attttccata ggaattaaaa gcatttcttg
     9661 ttgggttttg ctaaggcggt gaatttcatc aataaaaatt aaaggcttat aaagactatt
     9721 tttataatta tctaaaattt ttcttagttc ttcgagttta aaatttcctc catcaaattc
     9781 ataaaaatct aagccaaatt ctttggctac aactctagca aaagttgttt ttccagaacc
     9841 tgccgttcca aaaaaaatac tatgaggaag tttttgtaaa gcagtaaatt ttttgaaaat
     9901 ttctataagc tcatattgtc ctaaaatatc atcaaaattt tcagggcgaa aggtcaaagc
     9961 taggctcatt aatttaaatc catatttgaa aattcactac cattaatttt tagttgagga
    10021 ttggctaagc tatcataaga taaatttaga aaaaagttat tattttcttt taaaaaatat
    10081 tgatttaaac ctccataatc ttt
//
LOCUS       DARGED010000056         9594 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.056, whole genome shotgun sequence.
ACCESSION   DARGED010000056 DARGED010000000
VERSION     DARGED010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.056"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1180
                     /gene="lysA"
                     /locus_tag="SFZ84_001066"
     CDS             <1..1180
                     /gene="lysA"
                     /locus_tag="SFZ84_001066"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG8203186.1"
                     /translation="NTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAVKANSNLSLLQ
                     MLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEYDILYINLESE
                     AEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEIDIARKMYLYA
                     KNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKFFDIGGGLGVA
                     YEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVLYEKQNKTKRF
                     VVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFAKARSLPSTQS
                     DDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQIALEEKFLKA
                     "
     gene            1182..1949
                     /locus_tag="SFZ84_001067"
     CDS             1182..1949
                     /locus_tag="SFZ84_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG8203187.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSTVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRSDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            1937..3010
                     /gene="pheA"
                     /locus_tag="SFZ84_001068"
     CDS             1937..3010
                     /gene="pheA"
                     /locus_tag="SFZ84_001068"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG8203188.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            3000..4094
                     /locus_tag="SFZ84_001069"
     CDS             3000..4094
                     /locus_tag="SFZ84_001069"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG8203189.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGAP
                     PKAIECLRQNANKAHLYPDDSMIELKTTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            4146..5828
                     /gene="fliF"
                     /locus_tag="SFZ84_001070"
     CDS             4146..5828
                     /gene="fliF"
                     /locus_tag="SFZ84_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG8203190.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            5828..6856
                     /gene="fliG"
                     /locus_tag="SFZ84_001071"
     CDS             5828..6856
                     /gene="fliG"
                     /locus_tag="SFZ84_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG8203191.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            6864..7694
                     /gene="fliH"
                     /locus_tag="SFZ84_001072"
     CDS             6864..7694
                     /gene="fliH"
                     /locus_tag="SFZ84_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG8203192.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFIEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFIKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            7687..9534
                     /locus_tag="SFZ84_001073"
     CDS             7687..9534
                     /locus_tag="SFZ84_001073"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG8203193.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSRNGGHLSS
                     NLGAVELSIAMHLVFDAKKNPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNSCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAEKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLMKVLKFYH"
BASE COUNT         3442 a         1205 c         1889 g         3058 t
ORIGIN      
        1 taatactcct ttttatattt acaattttga tttcataaaa gagcgttttt taaatctcaa
       61 agaggctttt aaggcaagaa aatctcaaat tttttacgct gtaaaagcca attcaaattt
      121 aagtttgttg caaatgcttg caaatttaga tagtggattt gattgtgtaa gtataggcga
      181 ggtaaagcgt gccttaaaag caggagcaaa agcttataag attattttta gtggagtagg
      241 aaaaaccaaa gaagagttaa gacaagcttt agaatatgat attttatata ttaaccttga
      301 aagcgaagct gaaatgatgc ttttagaaag tgtggctaaa gaacttaatc taaaggcaag
      361 aatcagtatt cgtgttaatc caaatgttga tgcaaaaact catccttata tttctacagg
      421 attaaatgaa aataaatttg gtgttgaaat tgatatagca agaaaaatgt atctttatgc
      481 aaaaaattca tcttttttag agcctgttgg agtgcatttt catataggtt cgcaactttt
      541 agatatttct cccattcatg aagcagcagc cattgttgca aaacttgtaa gagagttaaa
      601 agccttgcaa atcgatctta aattttttga tataggcggt ggtttgggtg tggcttatga
      661 aaaaaatgag tgcgaacctg atctttatga ttatgcacaa ggtatattag cacaacttca
      721 tgggcttgat ttaactatag gaatggagcc tggaaggtat ctagttgcta aaagtggaga
      781 atttgtttgt tcagtgcttt atgaaaaaca aaataaaacc aagcgttttg ttgtagtaga
      841 tggagcgatg aatgatctta tacgcccaag tttatacgag gcttatcatg aaataatctt
      901 accttataat caaggcgaag agagtttatg tgatgttgta ggtggaattt gtgagagtgg
      961 ggactttttt gctaaagcaa ggtctttgcc tagcactcaa agtgatgata taatggttat
     1021 taaaaatact ggagcttatg gttttagcat gagtagtaat tacaatactc gtaataaagt
     1081 ttgcgaatta gcccttgaag aaggacaggt aagattgatc cgtcaaagag aaaattttga
     1141 agatcaaatc gctttagaag agaaattttt aaaggcttaa aatgtttttt ttagatgttc
     1201 aagggacttt aatttctgat catgataaat ctttaatcca tggtgctaaa gaactgatcg
     1261 attttttaaa tgcaaaaaat cttccttatc ttatcatcac taacaataca aaaaaacttg
     1321 attttttaga aaaattacag caaaaaggat tggctataaa agaaaatgct tatattgatc
     1381 ctttcagcgt tttaaaacac cttttaagac cttgtaaagt tgcggctttt ggtgcagatg
     1441 agtttgtaaa aagtcttgaa aatcttggtt ttgagctcga ttttgtaaat cctagtactg
     1501 tgcttgtggc tagttatgat gattttaaat ttaaagattt tgccactatg atagaattgg
     1561 ctagaagaga agttagattt atagctatgc acgaaactag tatttataaa aaagatggta
     1621 ggccttatcc tggtgtaggt agcattatgg ctatgcttaa aaatgctatt gattttgaat
     1681 acgaggttgt gggtaagcct agcattgctt tttataaaga agctttaaat ttaataagaa
     1741 gacaaaattc aaaaatcgat tttgaagata ttaaaatcat tagtgatgat tttaggagtg
     1801 acttgcttaa ggcaaaagaa cttggcatga aaaccttgct agttttaagc ggcaagataa
     1861 gcgacacaaa agggcttgat acggatttgc ttgatggagt ttatcctagt gtttttgagt
     1921 ttttaaagga tctaaaatgc caaatttaga agaatttaga aataaaatcg atgcggttga
     1981 tgataaaatt ttagatcttt taaatgaaag aatgacttat gttaaaagta taggtgagct
     2041 taagcaaagt agtgggggaa gtatttatcg tcctgagcgt gaaagagcca ttatcaatcg
     2101 tttaaaaaat gcaaatttag gacttttaga tcaaaatgcc atagaggcaa tttatcaaga
     2161 aatttttgca gtttcaagaa atttagaaat gcctcaaact atagcttatt tagggcctga
     2221 aggaacttat acacatcaag cagcaagaag tcgttttggt gcgatgagtc gttatatagc
     2281 cttggccaat atcgaagatg tttttaaaga gttaagcaac aaagaagcaa aatacggtgt
     2341 tgtacctata gaaaataata ccgaaggtgc agtgggcatt actttagatt gtctaggtaa
     2401 gtataatgag cttaaaattt ttggcgaaat ttatatggat attcatcatt cttttgtagg
     2461 aattaatgaa aatttaaaag aaatcaaacg catttattcg catccgcaag gttataatca
     2521 atgtcgtaaa tttttagaaa gtcatgaact tagtgctata gaatttgttc cttcaaaatc
     2581 tacagctaat gcagcttacc tagcttcgca agataaatat gcggcagcaa tttgttctag
     2641 aatagcggct aagctttata atgtgcctgt actttttgat aaaatagaag ataatgcagc
     2701 caataaaaca agatttttaa ttttaagcga tattaaaaat cctaaaatgc caaattgtaa
     2761 aacttctatt ttagcacaca cagcacataa acctggggga cttagctttt tattagagca
     2821 gtttaaaaaa gaaaatatca atcttactaa gcttgaatct cgccctgtaa aatcaaaaga
     2881 atttttacac agtttttata tagattttga agggcatatt gatgatgaaa atgtaaaaaa
     2941 agccttaaaa gatatacaag agattgtttg gcttggatct tatttatcag gagaaaaaga
     3001 tgaaatttaa tgaattttta aataatttaa gcaattatga acccggcaaa gatatagaag
     3061 ttattgctaa agaatatggc gttaaagaag tgataaaatt agcaagcaat gaaaatcctt
     3121 ttggcgcgcc accaaaagct atagaatgtt taagacaaaa tgcaaacaaa gcccatcttt
     3181 accctgatga tagtatgata gaacttaaaa ccacattggc tcaaaaatac aaagttcaaa
     3241 atgaaaatat tatcatcggt gcaggcagtg atcaagtgat tgaatttgct atacatgcta
     3301 agttaaattc taaaaatgct tttttgcaag ctggagttac ctttgctatg tatgaaattt
     3361 atgccaaaca atgtggtgca aagtgttata aaactcaaag tattactcat aatttagatg
     3421 agtttaaaaa actttatgaa acgcacaaag atgaaattaa acttattttt ttatgcttac
     3481 caaacaatcc tttaggcgag tgtttggatg caagtgaggc gaccgagttt attaaaggtg
     3541 taaatgagga ttgtttagtt gtgattgatg cagcttataa tgaatttgca agttttaaag
     3601 atagcaaaaa acatttaaaa ccttgcgaat tgattaaaga atttgacaat gtactttatt
     3661 taggaacttt ttctaagctt tatggattag gaggtttacg cattggttat ggtatagcta
     3721 atgctaatat tattagtgca ttttacaagc ttcgtgcgcc ttttaatgtg agtaatcttg
     3781 ctttaaaagc agcagttgca gcaataaatg atgatgaatt tgctaaaaaa actttagaga
     3841 ataatttttc tcaaatggag ctttataaag aatttgctaa aaaacataat atcaaaatta
     3901 tcgatagtta tacaaatttc atcacttatt tttttgatga aaaaaatagt acagatttgt
     3961 ctgaaaaatt gcttaaaaag ggtataataa taagaaattt aaaaagctat ggtttaaatg
     4021 ctatacgcat tactatagga acatcttatg aaaatgaaaa attttttaca gaatttgata
     4081 agattttaag atagataaat caaataaaaa tatgtaaaat tcgctaaact aagggatgag
     4141 aattaatgga ttttaaaaat atgcttcatc aaattgggca actttatcaa aatttaactc
     4201 gcaagcagcg tatagtgatt gctgcatcta ttatagttgt ggttgggttt ttggtttttt
     4261 tagctttatt tcgtggaagt ggtagtaatg caaataatgg atatgcagtt ttagttgaaa
     4321 atgtaagccc aagttcttct gctgcaattg tagctaaact tgaacaaaat aatattccct
     4381 ataaattaga aagtgaaaat aaaattttag ttccacaaga tcaggtttat cgtcaaagaa
     4441 tgtttattgc aagcgaaggt cttataaaag atagtcgcgt gggttttgaa gcttttgata
     4501 ctcaagcttt tggagctaca aatgaagagc aaaaggtaaa ataccaaaga gccatagaag
     4561 gcgaacttgc aagaactatt gagactttag aacctattcg tagcgctgtt gtacacatag
     4621 catttcctaa agatagtgtt tttaccgaaa ggcaaattcc gcctacagct tcagttgttg
     4681 ttaatgttcg cgaaggctta aagcttacta gaaaacaaat tgatggtata aaaaatattg
     4741 tttcagcggc agttccaaaa cttactaaag aaaatgttaa gattagtgat caaagtggtg
     4801 tgcctttaga tgagcaagaa gcatatgaag atgacttggt tcgtgcgcaa attaaattta
     4861 aaagtgatca agaaaaagct ttagaagata agattataga aaatttagct ccttttgcag
     4921 gtggcatgga taaagtaaaa gtgagtgtaa atatagattt tgatttttcc aagcaagaat
     4981 ctcaaagtga aatttatgat ccaaatccta tagtgcgtag tgagcaaact ttaaacgagg
     5041 aaagaacagg tagaaaagat ccagaaattc agggtgttcc aggtgctgtt tctaatatag
     5101 gtcctgttga aggacttgac aataagggtc aaattgacac ttataaaaaa aatcaagtta
     5161 ctacaaataa tgaactttct aaaactatca caaataccaa aaaacaattt gcaacagttt
     5221 tacgcacttc agcagctgtt actatagatg gaaaatatca agatgtggtt gatgaaaatg
     5281 gggatgtaaa aagcgaatat gtcccattga ctaaagaaga gcttgcaagt gttgagagta
     5341 tagttaaaaa tactattaat tttagcgcta ctagaggtga tagcgttgtg gtgcaaaatt
     5401 taccatttca tcgtgagtcg attagagttg agagtaaagt taaaactttt tacaatcgtt
     5461 ttgttgagcc atttattccg ccggttaaat actttattgc agcgatttta ctttttattt
     5521 tttacaaaaa agttattgct ccatttactc aaaaaatgct tgaagatgtc gcagcacaag
     5581 aggaaatgca gcaaggtcca aatgctgttt tagatgatgc tgaagatgct ttagagaaat
     5641 ttaatgcagc aaggaaaaaa gttgaagaac aacttggttt tggggataac ttcaatgaag
     5701 attctatcca gtatgaggtt ttgcttgaaa aattgcgtgg tttggtaagt gataaaggtg
     5761 aggaaattgc agcacttttg caaaacttaa ttcaaaatga tagcgaattt ggcgaaaagg
     5821 atatgtgatg ataaagctaa gtgaagaaca aaaaatggtc tatgatgatt tatcgatgcc
     5881 tgagaaggta gcgatatttc ttatacaact tggcgaagat gcaaccactt ctgtgttttc
     5941 acatatggaa attgatgtaa tcacagaaat ttcacgttat attgctatgg ctaaaaatgt
     6001 tgatagatct gtagctactg cagttttaga agaattttac actctgcttc aatcaaatca
     6061 atatattaaa agtggtggtt tggaatatgc taaagaaata ctttttcgta cttttggacc
     6121 agagattgca aataaaattc ttgaaaaact cactaaaagt atggagaata atcaaaattt
     6181 tgcttatttg gcgcaaatta aaccacagca acttgcagac tttattacca aagagcaccc
     6241 acaaaccatc gctcttattt tggcacacat ggattctatt catgcggcag aaactttaga
     6301 gtattttagc gatgaattaa gggctgaggt ggttataaga atggcaaatc ttggcgatat
     6361 ttctccaagt attattaaaa gagtttctgc agtgctagaa agcaagcttg aaagtcttac
     6421 ctcttataag gttgaagtgg gcggcccaag agcagtagca gaagtgctta atcgtttggg
     6481 tcaaaaagca agcaaatcaa ccattactta tattgaacaa agtgatgaac gcttagcaga
     6541 gactattaaa gagcttatgt ttactttcga tgatatacaa aaacttagca ctcaggctat
     6601 aagagaaatt ttaaaagtag ccgataagcg tgatttaatg ataggtttaa aaggtgcaag
     6661 tgaagagtta aagcaaaaat tcttagccaa tatgtctacg cgtgcaagcg aagcttttct
     6721 tgaagaaatg ggttttttgg gtgctgtgcg tgttaaagat gttgaagatg cacaaagaaa
     6781 ggttgttgaa gtggtgcaaa aacttgcaga acaaggtctt gttcaaacag gcgatgcgga
     6841 tgaaatgata gagtaggtga gagatggtta atcgtagcaa tgtaatttct ggtggggctt
     6901 ctgatcagca tgttgttgaa ggatatcgtt ttaaagttat ttcagaattt gataatcata
     6961 caggtgaaaa aaaacatact caaactccag atgaagaaaa tactaatata tctttaaatg
     7021 acgaaaaacc agtcgaagaa aatcaagtca ttgcctctac acaagctgtt atggaaactc
     7081 aaattccaac atttcaacca agttttattg aagatttact taaaaaaaca gatgaaatgt
     7141 caagcaatat tattaaactt caaatgcaaa tagaaagcca agagaatgaa tttaataacc
     7201 gcttaaattc agaacttgaa aatgctaaag aaaaatttat caaagagggt tatgagaaag
     7261 caaaagaaga atttcaaaag gaattgagtg attttaaaga taagtattta aaaagtatag
     7321 ccaaacttga taatgcttgc gaaaatcttg aaaatttcat agaaaaaaat gagaaagaat
     7381 tagcagatac tgctatagat atcgctaaag aagtaatctt aaaagaactt gaactaaatt
     7441 caagtaagat agcttatgct ttggctaaag atttaatcgg cgagcttaag ggtgctagtg
     7501 caattgagct taaggttaat gcagaggatt atgagtattt aaaagagcaa tttgatcaga
     7561 atgctcatat taaaataagt cttgatgatg caattagcaa aggaagtgtt gttattataa
     7621 gtgacgcagg caatatagaa tccaatctta actctcgtct aactaaaatt aaaaaaatgg
     7681 tgaataatga gtaaaaaatt tgcccatact caagaagagt tagaaaagct aagtttaaaa
     7741 gaattagaaa atttagcagc atctatgcgt gaaaaaatca tacaagttgt gagtagaaat
     7801 ggtgggcatt taagttcaaa tttgggtgct gtagaactta gtatagcaat gcatttggtt
     7861 tttgatgcaa aaaaaaatcc ttttattttt gatgtgtcgc atcagtctta tacacacaag
     7921 cttttaagtg gaaaagaaga aatatttgat actttaagac aaatcaatgg tttaagtggt
     7981 tatacaaaac ctagcgaggg agattatttt gtagcagggc attctagcac ctctatttct
     8041 ttggcagtag gtgcttgtaa ggccattgct ttaaagggtg aaaaacgtat tcctgttgct
     8101 ttaattggag atggtgcttt aagtgcgggt atggcctatg aggctttaaa tgaattgggt
     8161 gattctaaat ttccttgcgt aatactttta aatgataatg aaatgagtat ttcaaaacca
     8221 attggagcaa tttcgaagta tctttctcag gctatggcaa cgcagtttta tcaaagtttt
     8281 aaaaagcgta ttgctaaaat gttggatata ttgcctgata gtgctactta tatggctaag
     8341 cgttttgaag agagttttaa acttattact cctgggcttt tgtttgaaga attagggctt
     8401 gaatatatag ggcctattga tggacataat ttaggtgaaa ttatttctgc attaaaacaa
     8461 gcaaaagcta tgcaaaagcc ttgtgtgata catgctcaaa ctataaaggg taaaggctat
     8521 gctttagctg aaggaaaaca tgctaaatgg cacggggtgg gagcttttga tatagatagt
     8581 ggagagagtg ttaaaaaaag tgatactaaa aaatctgcta ctgaaatttt ttctaagaat
     8641 ttgcttgatt tagcctcaaa atatgaaaat attgttgggg ttacggcggc tatgccaagt
     8701 ggaacaggtc ttgataagct tatagaaaaa tatccaaatc gtttttggga tgtggctatt
     8761 gcagaacagc atgcagtaac ttctatggcc gctatggcaa aagaaggatt taaacctttt
     8821 attgcaatat atagcacttt tttgcagcgt gcttatgatc aagtgatcca tgattgtgcg
     8881 attatgaatt taaatgtggt ttttgctatg gatagggcag ggatagtagg cgaagatggg
     8941 gagacgcatc aaggtgtttt tgatcttagt tttttagctc ctttgccaaa tttcactctt
     9001 ttagccccaa gagatgaaca aatgatgcaa aatataatgg agtatgctta tttacatcaa
     9061 ggacctattg cttttcgtta tcctagaggg agttttattt tggataaaga atttaattct
     9121 tgtgagataa aacttggcaa ggcacaatgg cttgtaaaaa atagtagtga aattgctttt
     9181 ttaggttatg gacaaggtgt agcaaaagcg tggcaagtct taagagcctt gcaagaaatg
     9241 aataataatg ctaatttgat cgatttaatt tttgctaaac ctttagatga agagcttttg
     9301 tgtgagcttg ctgaaaaaag taaaatttgg tttattttta gtgaaaatgt taaaattggt
     9361 ggtatagaaa gtttaattaa taatttttta caaaaatatg atttgcatgt aaaagtcgtt
     9421 agctttgaat atgaagacaa atttattgaa catggaaaaa caagtgaggt ggaaaaaaat
     9481 ctagaaaaag atgtcaatag tttgttgatg aaagttttaa aattttatca ttaaataata
     9541 aaaaatatta tttaatataa acttctttta ataaaaattt tattattatt ttta
//
LOCUS       DARGED010000057         9566 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.057, whole genome shotgun sequence.
ACCESSION   DARGED010000057 DARGED010000000
VERSION     DARGED010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9566
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.057"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            234..3193
                     /gene="cas9"
                     /locus_tag="SFZ84_001074"
                     /pseudo
     CDS             234..3193
                     /gene="cas9"
                     /locus_tag="SFZ84_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790896.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes.;
                     frameshifted; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
     gene            3180..4070
                     /gene="cas1"
                     /locus_tag="SFZ84_001075"
     CDS             3180..4070
                     /gene="cas1"
                     /locus_tag="SFZ84_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG8203194.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQASLSSALFNAFARHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQINVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFKNSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            4063..4494
                     /gene="cas2"
                     /locus_tag="SFZ84_001076"
     CDS             4063..4494
                     /gene="cas2"
                     /locus_tag="SFZ84_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG8203195.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     gene            complement(4860..6050)
                     /locus_tag="SFZ84_001077"
     CDS             complement(4860..6050)
                     /locus_tag="SFZ84_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8203196.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENICIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDI
                     IFMP"
     gene            complement(6054..6500)
                     /locus_tag="SFZ84_001078"
     CDS             complement(6054..6500)
                     /locus_tag="SFZ84_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG8203197.1"
                     /translation="MKHFTLYQGSLDISKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(6501..6722)
                     /locus_tag="SFZ84_001079"
     CDS             complement(6501..6722)
                     /locus_tag="SFZ84_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG8203198.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(6724..8265)
                     /gene="cueO"
                     /locus_tag="SFZ84_001080"
     CDS             complement(6724..8265)
                     /gene="cueO"
                     /locus_tag="SFZ84_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG8203199.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINYDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFKIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRAEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            8389..9537
                     /gene="nspC"
                     /locus_tag="SFZ84_001081"
     CDS             8389..9537
                     /gene="nspC"
                     /locus_tag="SFZ84_001081"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG8203200.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN"
BASE COUNT         3428 a         1345 c         1566 g         3227 t
ORIGIN      
        1 attgtatttt ttgagtatat cataaaaatt agcatagggt ctcttgaatt tacaataaat
       61 tggattttat ctaaattttt aaataaaaaa tattttttat ttaaaaatta cttgtttttt
      121 gtattataaa attaacatat atagtttggt tactgaaaag tttatgtttg tttaaaaaaa
      181 tgatttttgt attataatta tacacaaatc ataaatatta aaaaggatct agtgtggcaa
      241 gaattttggc atttgatata ggaataagct ctattggctg ggcatttagt gaaaatgatg
      301 agttaaaaga ttgtggagtt aggattttta caaaggctga aaatcccaaa acaggagaat
      361 ccttagcctt agacgccttg caagaagtgc tagaaaacgc cttgctagac gcaaagcaag
      421 gctaaatcac ttaaaacatt taatcgcaaa tgaatttaag ttaaattacg aagattatca
      481 aagctttgat gaaagtttag ccaaggctta taaaggatct ttaattagcc cttatgagtt
      541 aagatttaga gctttaaacg agcttttaag taagcaagat tttgcaagag tgattttaca
      601 tattgcaaaa aggcgtggct atgatgatat taaaaatagt gatgataaag aaaaaggtgc
      661 gattttaaaa gctatcaagc aaaatgaaga aaaactagca aattatcaaa gtgtgggcga
      721 gtatctttat aaagagtatt ttcaaaaatt caaagaaaat tccaaagaat ttacaaatgt
      781 tagaaataaa aaagaaagtt atgaacgctg catagcgcaa agttttttaa aagatgaatt
      841 aaagcttatt tttaaaaaac aaagagaatt tggcttttct ttttcaaaaa aatttgaaga
      901 agaggtgctt agtgtagcat tttataaaag ggctttaaaa gatttttctc atttggtggg
      961 aaattgtagt ttttttaccg atgaaaaaag agcgccaaaa aattcgccct tagcttttat
     1021 gtttgtagca cttacaagaa ttatcaatct tttaaacaat cttaaaaata ctgaaggaat
     1081 tttatataca aaagatgatt taaacgccct tttgaatgaa gttttaaaaa acggcactct
     1141 aacttataaa caaacaaaaa agcttttggg cttaagcgat gattatgaat ttaaagggga
     1201 aaaaggaact tattttattg agtttaaaaa atataaagaa tttataaaag ccctaggtga
     1261 tcatagttta agccaagatg atttaaatga aatagcaaaa gatattaccc ttataaaaga
     1321 tgagattaag cttaaaaagg ctttagcaaa atatgattta aatcaaaatc aaattgatag
     1381 tttaagcaaa ttggaattta aagaccattt aaatataagt tttaaagcct taaaacttat
     1441 cactccttta atgcttgaag gtaaaaaata cgatgaagct tgtaatgagc ttaatttaaa
     1501 agtagcaatc aatgaagata aaaaagattt tttacccgca tttaatgaaa cttattataa
     1561 agatgaggta actaatcctg tggttttaag agcgattaaa gaatacagaa aggtcttaaa
     1621 tgctttactt aaaaaatacg gcaaagtgca taaaataaac attgaattag caagagaagt
     1681 aggtaaaaat tacagccaaa gagctaaaat agaaaaagag caaaatgaaa actacaaggc
     1741 caaaaaagac gccgaacttg aatgtgaaaa actaggctta aaaataaata gcaaaaatat
     1801 tttaaaatta agattattta aagaacaaaa agaattttgt gcttatagtg gagaaaagat
     1861 taaaattagt gatttgcaag atgaaaaaat gcttgaaatt gatcacattt acccttattc
     1921 tagaagtttt gatgattctt atatgaataa agttttagtt tttaccaagc aaaatcaaga
     1981 aaaacttaat caaaccccct ttgaagcctt tggcaatgat agtgcaaaat ggcagaaaat
     2041 tgaagtttta gcaaaaaatt tacctactaa aaagcaaaaa agaattttag ataaaaatta
     2101 caaagacaaa gagcaaaaag actttaaaga tagaaatcta aacgatactc gctacatcgc
     2161 aaggcttgtt ttaaactaca ctaaagatta tttagatttt ttacctttaa gcgatgatga
     2221 aaatacaaag ttaaacgaca cacaaaaagg ctcaaaagtg catgtagaag caaaaagcgg
     2281 tatgcttaca tcggctttaa gacacacttg gggctttagc gctaaggata gaaataacca
     2341 tcttcatcac gccatcgatg cagtaattat tgcttatgca aacaactcta tcgtaaaggc
     2401 tttttcagat tttaaaaaag agcaagaaag caacagtgca gaactttatg caaaaaaaat
     2461 tagtgaatta gattataaaa acaaaaggaa gttttttgag ccttttagtg gttttaggca
     2521 aaaggtttta gataaaattg atgaaatttt tgtctcaaaa cctgagagaa aaaagccaag
     2581 cggagcctta catgaagaaa catttagaaa agaagaagaa ttctatcaat catacggcgg
     2641 aaaagaagga gttttaaaag ccctagagct tggtaaaatc cgcaaagtaa atggtaaaat
     2701 tgttaaaaat ggcgatatgt ttagagtgga tatttttaaa cacaaaaaga caaataaatt
     2761 ttatgctgtg ccaatttata ctatggattt tgctttaaaa gtattaccaa ataaagctgt
     2821 agcacgaagt aaaaaaggtg agataaaaga ctggatttta atggatgaaa attatgagtt
     2881 ttgcttttct ttatacaaag atagtttgat tttaattcaa actaaagata tgcaagagcc
     2941 agaacttgtt tattttaatg cttttacaag ctctactgtt agtttgattg tttcaaaaca
     3001 cgataataaa tttgaaacgc taagcaaaaa tcaaaaaata ttgtttaaaa atgcaaatga
     3061 aaaagaagta atcgcaaaaa gcataggaat tcaaaatcta aaagtatttg aaaaatacat
     3121 agtttcagca cttggagaag tgacaaaggc tgagtttaga caaagagaag attttaaaaa
     3181 tgagttacga tgaagctttt aaaacactgc ttattagctc taatgccaag ctaaatttag
     3241 agctaaatca tcttgtgatt aagcaagatg aaaatatagc caaattgttt ttaaaagata
     3301 taaatatcat cgttttagaa agcttacaag caagccttag ttccgcactt tttaatgcct
     3361 ttgcaaggca taaaatcatc ttgctaacct gcgatgaaac tcatagtata aatggtattt
     3421 ttactccttt tttagggcat tttcaaagtg caaaaatcgc aaaagaacaa ataaatgtaa
     3481 gtgctcaaaa aaaggctatt ttatggcaaa aaatcattaa aaataaaatc ctaaatcaag
     3541 cctttgtttt gaaaaaacac aataaaatag agcaaagcaa tgagcttata aatttggcca
     3601 aaaaagtaag cttaaatgat agtaaaaata tcgaagctgt tgcagcggcg ctttatttta
     3661 aaactttgtt tgggacttct ttttcaagag atgagctttg ctttaaaaat tctgctttaa
     3721 attatggcta tgcaatcatt agggcttgta ttattagagc agtttgtata agtgggcttt
     3781 tgccttggct tggcattaag cacgataata tttataattc ttttgcgctt tgtgatgatt
     3841 tgatagaagt gtttagggct agtgttgatg attgtgtttt aaagcttaag ggtgaaagtg
     3901 agtttttaag caaagatgac aaaagagcgt tgattggcaa tttacaaagc aaaatcaatt
     3961 ttgatgggca aaattatcct ttaaacagag cgataaatca ttatgtggca aattttaaaa
     4021 atgctttatt gtatgaagat gaactaaaga tagtgaaatt tgatgattga agataaattt
     4081 atgcgcgtgc ttttgatgtt tgatgtacct actaaaagta aaaaagagca aaaactagca
     4141 agtaaattta gaaacaatct tataaaatta ggttatttta tgctgcaatt tagcgtttat
     4201 atgcgtattt gcaagggttt aagttctgca aaaagttcta ttgaaaatgt aaaaaagatt
     4261 ttgccacctt atggaaatgt aagggcttta atcatcactg aaaagcaatt tgataaaatg
     4321 gagcttttgc ttggtggcat agtttttaat gaaaaagtta ataacgaaac caatttaacg
     4381 ctttttgata tagatagtca tggagaattt aaatataaaa attcaaataa tgaagaaatt
     4441 caaataaaca aaaaacaaga aaaatatcat cagcaaaatt tatttgaatt ttaaaagcgg
     4501 ttttagggga ttgtaacccc gcagagtccc gcaaactctt tattttagtc cctttttaaa
     4561 tttcttatga gattatagca taatttttgc tatttttcat gaaaaaaccc cgaaattttc
     4621 attatctggt aaatatctat tttaccataa agaaatttaa aaagggacta aaactaaagc
     4681 tatctttaaa cttttttttc atttatttta ccataaagaa atttaaaaag ggactaaaat
     4741 aaaccctagt ggattgaaac tccgctaggg ctaattactc cactaaaagg aggttgcgaa
     4801 tttgaaactt attgaaattt agggttgatt aaaatcgaaa taaaattatt taaacaattt
     4861 taaggcataa agataatatc cactaaactt tcattttcta aaatttcaca ttcttttggc
     4921 gccaccataa gggcagcttt attgttaaga ttgtttataa tcgcactaga gccttctttt
     4981 ttgccttcaa gattggctaa aatgcgtcca ttttcaaact ttatgttaca agcgacaaat
     5041 tccaaataag gtgttttttt cttgtaactt ccttgtaaaa aggctttgca aatatagtct
     5101 ttaggctgaa gtaaccaaga gtttaaaatc tctcttgcgt aaagattaaa cattaccata
     5161 gccgagtaag gaaaacctgg taaggcgatg atgaattttt cattagcctt agctattttg
     5221 atatgtctac ctggttttat gtcggcttta tcgatgatga tttcgtattc tttgatggct
     5281 ttttttaaaa agtcaaaatc tcccatagaa accccgcccg ttgtaaccaa aatatcacaa
     5341 ctttgcaaag cactttcaag ggtggaaaaa gtggctttct catcatcttt taaaagagga
     5401 aaaacccttg tatcgcaatt taaattttta gctaaattag ctatggcgat atgatttgaa
     5461 gagcggattt gagcaggatt ttccaaggct tctcctagat ctttgatctc acttccacta
     5521 cttaaaaccc ctacaatagg ctttataaac acactaatgt gaaaaaatcc aagttcagct
     5581 aaaagagcta tctcgctata atttaacttt gtgccttttt tgagtaaaat ttcatctttt
     5641 ttatagtttt ctcctaccgc acgcacggca aaagcttggg gaactttttt ttctataaaa
     5701 agagtatcat tttctatgca tatattttca acagggacta aagtatcgct tccttcgctc
     5761 atgagtgagc ctgtaaaggt ttttacacaa gtgccatttt gcacgctaaa ttgtggcata
     5821 gtacccgcag gtgtgatacc taaaattttt aaaggcttat cttgatcttc aaatttgatc
     5881 gcataaccat ccatagccga agttggaaat tcgggctgat ttttaggggc ttttatgtct
     5941 tgagctaaaa tgcgtcctaa acactctgta agagctattt tttcaatctt ttcataagtt
     6001 ttaatatgag aatgtaaaat ttttaaactt tcttcataag acattaacat tttttatcct
     6061 tttaaaagtc ctgcaccgca aagtttggtt gatctttctt tggcataaat tctttctttg
     6121 tttatcacat catacttcca aatgggcgca cttgctttaa aatcttcaac aaattcatta
     6181 agaagtttaa gtcctaattt tctttgtttg cttaaaattc ctgcaaaata cgagctttca
     6241 tgtatcgcta catcgcctat agagtgagca aaaagcaagc taataccatc aaaatctact
     6301 cttttttgcc actcatcaaa ccattttttt aaaagcggtt cataaatatc aaaactaagt
     6361 gcctcaatac ctccttcttc acgcacaata ccacaaaaag tcagtaaagc accgcagttt
     6421 ttatccttgg aaaattcata ccattggcta taaattttag aaatatctaa agagccttga
     6481 taaagtgtaa aatgtttcat ttagcctcca caaactggcg gtaaaagtgc tattttatca
     6541 ccatctttta acttggtgtt ttcatcaaaa atgatttcat catttaaaga tacagcacaa
     6601 agttctagcc attcttttaa actctcatct ttttgcaaaa tttcttttaa ttcttttaaa
     6661 ttttttactt caagttctaa attttcttta tttatggggc ctaaaaattc cacttttacc
     6721 attttattcc tttacttcta aatttcccat cattcctaaa tcttcatgtt ctaaaatatg
     6781 gcaatgatac attctaagtc ctttaaaatc ttgtttcatt ctaagtctta attcttcatt
     6841 aggacgcaca tttatagtat ctctgaaggc tctaaattcg gctttttgaa ctttgccatt
     6901 gagttttgat gagatgagtt caaattgcgt gccgtgtatg tggaaaggat gatccatgtg
     6961 agatttattt atcactatcc agtcttcaac tactccaagc ttggagctta aatcaatgcg
     7021 ttttaaatca tagcttttgc cattgattaa aaacatagac gcaagagcga tttttaattc
     7081 gctttcactt tttcccatca taccatgcat ttgcatatga tcttcactca tgattatttc
     7141 tttaaattcc ttaggttctt ctgaaggttt gaaaattttt aaattttttg gaagttctac
     7201 attttctttt tttagactaa tattagctaa aaatagggta ttaggttctt cttttaccat
     7261 cattttatcc ctatcataat aagcactttc tagcttaaaa ttcccatctt ttggagcgtc
     7321 gattaaaact tctgcacgag aagcaggact taagaaaagt tcttctttat aaatagtttt
     7381 ttctataagt ccaccatcag taccaacaag tataaactta gctccttgta tgcgtaaatt
     7441 taaatatctt gccgcagtag cattataaat gcgtatgcgt tcgtttgtgg cgagtttgat
     7501 ttgaggttta aattgtccat taatgagtac aaattctcct tctctaccat ttagccaatc
     7561 atttaggttg ttgttcggaa tttgagcgtt ttcatcaaga cgcaaatcgc taatcatcaa
     7621 atctctttct tttaaatgac ttaaagcatc tttttttgct ttgatcacaa aagcccctgc
     7681 taaacccata aaaacttgtt tagaagcggt ataatgaggg tgtggatgat accagtaagt
     7741 tcctgcgcta tcttgaggaa ttttaaaacg atatattctt tcttctcctg ctaaaatagg
     7801 atcatgtggg cttccatctt gatcaggcgg cacaggaacg ccatgccaat gtatagttgt
     7861 agcttctttg agtttgtttt tgactaaaat ttcaagttta tctccttcaa aaacttctat
     7921 ttttggagca ggcacgaggc cattgtaagt ataaaataag gtttttttac ctttgataag
     7981 ctctatatga ttttctttga tttctagggt agcacgaaaa atattttttt ctttactttc
     8041 atttttgagt aaaggcaagg cttttaaaat ttctccttgg gggaattgtt ttggatctaa
     8101 aagttttaaa ttttttggag caaagttgat aaaagaagta tctaagtcat aatttataga
     8161 atgattttta tgcatggagt gcatatcgtg cataggattt gcataggcta cacccatact
     8221 tgctagagtg agtgcattaa attttaaaaa atttcttcta ttcattagtt tttccttttg
     8281 cttgattttt tgtattatag tcattatttt tttaacttta gtaaatattt attttgaaaa
     8341 tttggtttaa ttttgttatg attttagcaa tttaatcaag gaaaaataat gttttatgaa
     8401 aaaattcaaa ctccagctta tattttagaa gaagataaat taagaaaaaa ttgtgagctt
     8461 ttagcaagtg ttggtgaaaa aagtggtgct aaagtgcttt tagctttaaa aggttttgct
     8521 ttttcaggag cgatgaaaat tgttggagaa tacctaaaag gttgtacttg tagcggactt
     8581 tgggaagcaa aatttgctaa agaatacatg gataaagaaa ttcatactta ttcacctgct
     8641 tttaaagaag atgaaatagg tgaaatagcc agtttatctc atcatatagt gtttaactct
     8701 ttagcccaat ttcataaatt tcaagctaaa acacaaaaaa attccttagg tcttcgttgt
     8761 aatgttgaat tttctctagc cccaaaagaa ctttacaatc cttgtggaag atactcaaga
     8821 cttggaattc gtgctaaaga ttttgaaaat gtggatttaa atgctataga aggacttcat
     8881 tttcacgcac tttgtgaaga aagtgctgat gctttagaag cagttttaaa ggcttttgaa
     8941 gagaaatttg gcaaatggat agggcaaatg aaatgggtga attttggagg aggacatcac
     9001 atcactaaaa aaggctatga tgttgaaaaa cttattgctt tgtgtaaaaa tttcagtgat
     9061 aaatatggcg tgcaagttta tcttgaacca ggcgaagcgg tgggttggca aacaggaaat
     9121 ttggtggcta gtgtagtaga tatcatagaa aatgaaaaac aaattgctat tttagatact
     9181 tcaagcgaag cacatatgcc agatactatc atcatgcctt atacaagtga agttttaaat
     9241 gctagaattt tggccacaag agaaaatgaa aaaatttcag acttaaaaga aagcgaattt
     9301 tcctatttgc ttactggaaa tacttgttta gcaggtgatg taatgggaga atacgccttt
     9361 gataaaaagc ttaaaatcgg cgataaaatt gtttttttag atcaaattca ttacaccatt
     9421 gtgaaaaaca caacttttaa tggtataaga cttccaaatc tcatgctttt agaccgtaaa
     9481 aatgaacttc aaatgataag agaattttct tataaggatt attctttaag aaattagtat
     9541 tatttataat ttgcataaaa tgttaa
//
LOCUS       DARGED010000058         9541 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.058, whole genome shotgun sequence.
ACCESSION   DARGED010000058 DARGED010000000
VERSION     DARGED010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9541
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.058"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            81..2171
                     /gene="cfrA"
                     /locus_tag="SFZ84_001082"
     CDS             81..2171
                     /gene="cfrA"
                     /locus_tag="SFZ84_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEG8203201.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVITKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVPGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKKGQLGTIT
                     KPGDKGSLIGGYTDIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNNGREVVGQATQ
                     PFLGENRDIVAEDIILDTKSVIPLGQSHILSVGGEYRLEKMQDKIANPTNFDQYLLAI
                     FAEDEYSIKDDLRFTFGARYNHHEIFGNNVSPRAYLVYNPTDELTLKGGVSTGFRTPY
                     ANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKDK
                     ISTQRYDKNNMIPGIGTCNADGCFRAINHGKVEYKGVELGAGISPLDNLNVNFAYTYL
                     DSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNINR
                     EYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGTTTTWVNTYNRI
                     EEGRRIYISINGSF"
     gene            2472..3266
                     /locus_tag="SFZ84_001083"
     CDS             2472..3266
                     /locus_tag="SFZ84_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG8203202.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3263..3790
                     /gene="grpE"
                     /locus_tag="SFZ84_001084"
     CDS             3263..3790
                     /gene="grpE"
                     /locus_tag="SFZ84_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG8203203.1"
                     /translation="MSEQKQEIENENAQNSENLQDDLQDNEKNETNELQKELEELKDK
                     YMRANAEFENIKKRIEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKIK
                     EGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYK
                     IADRVIRPTKVSVAK"
     gene            3812..5683
                     /gene="dnaK"
                     /locus_tag="SFZ84_001085"
     CDS             3812..5683
                     /gene="dnaK"
                     /locus_tag="SFZ84_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG8203204.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIEGKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            5816..7726
                     /locus_tag="SFZ84_001086"
     CDS             5816..7726
                     /locus_tag="SFZ84_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8203205.1"
                     /translation="MKQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRID
                     AVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRI
                     NFENYLDCFSENIKDIILKFKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEK
                     GNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIK
                     QGTWLIYDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLI
                     KGENPERIKFGSTLSNDQQNLQFDFMLSNPPYGKSWENDQKILGVEKKGLNSTCNDPR
                     FSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSDSGMVAIRKHIIE
                     NDYLEAIVALPTNMFYNTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLG
                     SKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFA
                     KLKDKDKILEKLQELEQNPQDFKNREEFIKFLGVKLKKSEENLIIDSDKTNNTEKIPL
                     KTNIQGYYDTEVKPYVANSWIAWESASVGYEILFSKYFYTYTPPRKLEEINNELEKLE
                     KEVQDLLREIVQ"
     gene            7723..9024
                     /locus_tag="SFZ84_001087"
     CDS             7723..9024
                     /locus_tag="SFZ84_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8203206.1"
                     /translation="MKNFKESGIEWLGEIPEHWEVVKINKIVTFVNGYAFENFDFNPI
                     FEIPVIRIGDMQKEKILYDNCLKTKEKEKLKQFLISNNDILIALSGATTGKIAFCDTD
                     NKAYINQRVAIVRSKLKLVKYYFLTRGFSLLIELACNGSAQPNISTKEIGEFKIPLPP
                     LKEQEQIANFLDEKCKKIANFIEKKEKLITLLKEQKQALINETITKGLDKNINFKDSG
                     IEWLGEIPQHWEVKKLKMLFTLGNGLNITKADFVSYGIPCVSYGEIHSKYPCRLNTTI
                     HTLPFVSKTYLADKPQSLLQKGDFVFVDTSEDIEGSGNFTSIQSDTPIFAGYHTIILK
                     YRGKINSLYFSFLFDSIFTRNQIRKEVCGVKVFSITKSILKEVQCLIPPLKEQEQIAN
                     FLDEKCEKIDLLIEKTKKQIKLIKEYKTTLINQAVCGRINL"
     gene            9036..>9541
                     /locus_tag="SFZ84_001088"
     CDS             9036..>9541
                     /locus_tag="SFZ84_001088"
                     /inference="COORDINATES: protein motif:HMM:NF024565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8203207.1"
                     /translation="MITKISMKNVASYKDETTLETNKRINLIYGLNGAGKTQISKFLA
                     NQKDEKFKDCKIEGLINEENLVYNQDFIDENFYDTDRQKGIFTLSEENTSIKQEIENL
                     QKELIRLKSSQDENQRKLEEKQKDIIKIENDFKDNIWKIKQNHSDNFKDFFEGKMGSK
                     ESFLNFIKS"
BASE COUNT         3725 a         1237 c         1740 g         2839 t
ORIGIN      
        1 tgatacaaaa tttatcttaa attaataatt attatcataa tattttgatt tctaaatcaa
       61 tatttaacaa aaggagaaaa atgaaaaaaa tatgtctatc agtttgcgcc attggtctct
      121 taagctccaa tgccatatcg caaaatgtag aactagatag ctcaatcgtt agtgcttctg
      181 gctttaccca agatattaaa gaagctcctg ctactatcaa tgttatcact aaaaaagaat
      241 tacaaagtaa gccttataga gatgttgcag aggctatcgc agatattcca ggcgttgatt
      301 tatatgctag caagggaaaa acaggttctt ataatatcac tatgaggggt attactggat
      361 atactttggt tttgattgat gggcgtcgtc agggtattgg cggagaggtg ggccctaatg
      421 gttttaatga aatttcaaat tctttcttac ctccgatttc tagtatagaa aggatagaag
      481 ttataaaagg tcctatgagt actttatatg gctctgaagc tttaggtggg gtggtaaata
      541 tcattaccaa aaaagtgagt gataaatggg aaacttctgt aagtttggat gctcttttaa
      601 atgaaaataa agactggggc aatacttatg gaacaagtat ttattctagt ggtcctttga
      661 tgaatgataa attaggtcta acgcttcgtt ttagagaatt ttacagacag caatctaatg
      721 ttgaatttac aaatggaagt ggacaaagag ttccaggaga tcaagctcaa agtcctacaa
      781 aggcaaataa ttttaacata ggaacaagaa ttagttattt agctaatgat tataatacct
      841 ttatatttga tatagatttt tcaagaaatc attatgataa taaaaaaggt caattaggaa
      901 ctattacaaa accaggtgat aaaggtagct taataggtgg ttatactgat ataatggaag
      961 ttgataaatt tgtgacttat ttaagtcatg agggtgttta tgaaaacttt tctatcactt
     1021 ctggtttgca gtataataga gtaagcaata acggccgtga agtcgtagga caagccacgc
     1081 agccgttttt gggagaaaat agggatatag tcgcagaaga tattatctta gatactaagt
     1141 ctgttattcc tctaggacaa agtcatattt taagcgtagg cggtgaatat aggcttgaaa
     1201 aaatgcaaga taaaatagct aatcctacta attttgatca gtatttattg gcaatatttg
     1261 cagaggatga gtatagtata aaagatgatt taagatttac ttttggagca agatataatc
     1321 atcatgaaat ttttggaaac aatgtttcac caagagctta tttggtttat aatcctaccg
     1381 atgaacttac tttaaaaggc ggtgtatcta cgggttttag gactccttat gcaaatcgtt
     1441 tgataaatgg agcttataat tatagtggtc aaggtagatt ccctatatat ggaaatcctg
     1501 atttaaaaga agagacatct ttaaattatg aaatagcagc tatttataat aatgatttat
     1561 tttatgtttc agcaacaggt tttttaacaa attttaaaga taaaatttca acccaaagat
     1621 atgacaaaaa taatatgatt ccaggaattg gtacttgtaa tgctgatgga tgttttagag
     1681 cgatcaatca tggtaaggtt gagtacaaag gtgtagagct tggagcaggg ataagccctc
     1741 ttgataattt aaatgtaaat tttgcttata cttatcttga tagtgaggtt aaagaagcac
     1801 aagataaaag tgtgataggt aaacctgagc aggatagttt aaaacataat attatgttga
     1861 aaactgaata cagcttctat aataaaatta ccccttggat aaaaggcgaa tggcaaatag
     1921 atcgctatat gggtgatact aatataaata gggaatatta taaggatatc tttttagctt
     1981 ctatgggtgt gcgttatgat atcaataagc aatggagtat caacgcagct atttataatc
     2041 tttttaacaa aagttttaca gatggttggg aatcttatca aaatagcggt actactacta
     2101 cttgggtcaa tacttacaat cgcatagaag aaggaagaag aatatatatt tccattaatg
     2161 gtagttttta agctttgata gaaaagccaa agagcttgta aaggcttctt tggttttttg
     2221 tttatagcat cttgtgcttt taaaaaagtt aaattatcga atctatttaa aatttcttat
     2281 ctaattatca ccctgtttac caatattgaa atatatccta tccttataaa aaagtaacta
     2341 ataaaacttt agttatatag actaaataaa attaagtata tttttttata tttatacttg
     2401 acaaaataac actcaatgtt gtataatata tctagcaatc aaaaaataga gtgctagata
     2461 taaaggaaaa catgatgaaa agtcgagata aaaaggattt gattttagag tctattatcc
     2521 aaacttatct tttggataat gcacctattg gttctaatga attaaattca aacctttgta
     2581 tacctgcttc gactatacgc gtttatctta aaagacttag cgatgagggt ttgatcactc
     2641 agcttcatat aagtagtggt agaattccta ctattttaac gatgcaaaat tattggcaaa
     2701 gtttttggga aaaagaacaa gataaaaata tccatatcaa aaacgaaagc tttttgaaag
     2761 agttaagtaa agaatttgaa atttattgtc ttgtttatgg aggtagaagt ttagtactta
     2821 aagaagtact agatcttaat actaaattta tagtgcttga ttttgaagat gaagagctgg
     2881 ttttaaaata cgaaaaagaa gcgtggaatt ttttacaaag tcttataggg cttgatcttt
     2941 ctagtataga aaaaatagct ttgagagttc attttataga tcttgtagaa aaaatagcta
     3001 gcttaagaca aaatttgatt tgctatagaa gcaatgaaga aagagcttat caaatttatc
     3061 aaaatgatga atttgttaag ctcttagatt gtcaaattca ccgtcatttt aaagaaagtc
     3121 ttgaatttga acctttattt aaagaaggtt ttatggggct taaggtagat gcgcagtttt
     3181 tgggcgaaga tgtaaatatt atcttagcag gtagtgttta tacggattat aaaaagatat
     3241 tacaatacat aaaggaggcg gcatgagcga acaaaagcaa gaaattgaaa atgaaaatgc
     3301 acaaaattct gaaaatttgc aggatgattt gcaagataat gaaaaaaacg aaacaaatga
     3361 attacaaaaa gaattagagg aattaaaaga taaatatatg cgtgcaaacg ctgaatttga
     3421 aaatattaaa aaaagaatag aaaaagaaaa gctaagtgct atggcttatg caaatgaaag
     3481 ctttgcaaag gatttgcttg atgttttaga tgctttagaa gcagctgtta atgtcgaatg
     3541 ccaagatgaa attagcttaa aaatcaaaga aggagtgcaa aatactttag atttatttct
     3601 taagaaactt gaaaaacatg gggtggctct tatcaaagat gaaaaagagt ttgatcctaa
     3661 tttacacgaa gcaatgtttc atgtagatag tgaaaaccat caaagtggtg aagtggttca
     3721 agtgcttcaa aaaggttata aaatagccga tcgcgtgatc cgcccaacca aagttagtgt
     3781 agcaaaataa attttaataa aaggataaaa aatgagtaaa gttataggta tagatttagg
     3841 aacaaccaat tcttgtgttg ctgtgtatga acgcggcgag agcaaagtaa tcccaaacaa
     3901 agaaggaaaa aacacaactc cttcagtggt agcttttaca gataaaggcg aagttttagt
     3961 aggcgatagt gcaaaacgcc aagcggtaac caaccctgaa aaaaccattt attctatcaa
     4021 aagaattatg ggtttaatga tcaatgaaga tgcggctaaa gaagctaaaa atagacttcc
     4081 ttaccacatc accgaaagaa atggtgcgtg cgcaatagaa atcgcaggta aaatttatac
     4141 tccgcaagaa atttcagcga aagttttaat gaaactaaaa gaagatgctg aagctttttt
     4201 gggcgagagt gttgtagatg cggttattac tgtgcctgcg tattttaacg atgcacaaag
     4261 aaaagcaaca aaagaagcag gaactatcgc aggacttaat gtattaagaa ttatcaatga
     4321 gcctacttca gcagctctag cttacggact tgataaaaaa gatagtgaaa aaattgtggt
     4381 ttatgatcta ggtgggggaa cttttgacgt tactgtgctt gaaactggcg ataatgtagt
     4441 agaagtttta gcaacaggtg gtaacgcttt cttaggtggt gatgattttg ataataaact
     4501 tatcgatttt ctagcaagtg aatttaaaga tgaaacaggc atagatctta aaaatgatgt
     4561 tatggctttg caacgcttga aagaagcagc agaaaatgct aaaaaagaat taagctcagc
     4621 taatgaaact gaaattaatt taccatttat cacagctgat gcgagtggcc caaaacactt
     4681 ggttaaaaaa cttactagag ctaaatttga aggtatgatt gattctttag tggctgaaac
     4741 catcactaaa atcaatgaag tagtaagcga tgcaggtctt aaaaaagatg aaattaaaga
     4801 aattgttatg gtagggggct ctactcgtgt tcctttagtg caagaagaag tgaaaaaagc
     4861 ctttaataaa gatcttaaca agtctgtaaa tcctgatgaa gttgtagcta ttggtgcggc
     4921 gattcaaggt gcggttataa aaggcgatgt taaagatgtg cttttacttg atgttactcc
     4981 gctctctttg ggtatagaaa ctctaggcgg ggtaatgact aagattatcg aaaaaggtac
     5041 aactattcca actaaaaaag agcaagtttt ctcaaccgct gaagataatc aaagtgctgt
     5101 tactatcaat gttttacaag gggaaagaga gtttagtcga gataataaat ctttaggaaa
     5161 tttcaacctt gaaggaattc caccagcacc acgcggtatg ccacaaatcg aagttacttt
     5221 tgatatcgat gcaaatggta ttttaactgt tagtgcaaaa gataaagcaa caggtaaggc
     5281 tcaagagatc aaaatcacag gttcgagcgg acttagcgaa gaagaaatta acaacatggt
     5341 aaaagatgct gaacttcaca aagaagaaga taaaaaacgc aaagaagctg tagatgctag
     5401 aaatgcagct gatagcttgg ctcatcaagt agaaaaatct ttaagtgagt tgggtgaaaa
     5461 agttgccgct gctgataaag aaaatatcca aaaggctctt gatgatttgc gtgagacctt
     5521 gaaaaatcaa aatgcaagca aagaagagat tgaaggtaaa atgaaagctt taagtgaagt
     5581 ttctcataag ttagctgaaa atatgtataa aaaagatgag ccaaacacag caaatgataa
     5641 aaagaaaaaa gatgacgatg taatcgacgc tgaagttgag taatcttcta aaatcttcat
     5701 tcaagccttg ttaaaaggct tgaactcaat tctattttat cttatttaat ttttaaaaat
     5761 tttttagtag tgattttata taatatatta ttaataaaaa tataaggaac acattatgaa
     5821 acaaagccaa ttccagccca ttgtcaactt tatatggagt gtggcagatg atttgcttcg
     5881 tgatgtttat gtaaagggca aataccgcga tgttatctta cccatgacaa tcataagaag
     5941 aattgatgcg gttttagagc ctacaaaaga taaagttctt aaaacctaca atacctataa
     6001 agatgaattt gaaaatttag aatctttgct aggtggaaaa caagggaata aactaggctt
     6061 ttttaattat tctcgattta atctacaaac ccttctaaac gatccaaaaa acataagaat
     6121 aaattttgaa aattatcttg attgttttag tgaaaatatc aaagatatca ttttaaaatt
     6181 taaattcaaa aaccaactcg ataccctaga agaatccaat atactttttg gtgttataga
     6241 aagattttgc tcgcctaagg taaatttcgg tatagaagat attttagatg aaaaaggtaa
     6301 tgttatccat aaaggcttga gtaatcttgg catggggtat gtttttgaag agcttatccg
     6361 taaatttaac gaagaaaata atgaagaagc cggagagcac tttaccccaa gagagattat
     6421 agagcttatg actcatcttg tatttttgcc tgtaaaagag cagatcaaac aaggaacatg
     6481 gcttatttat gataatgctt gtggaagtgg tggtatgcta acagaatcaa aagaattcat
     6541 cacagatcct gaaggactta tacagtcaaa ggcaaatatt tatctttacg gacaagaaat
     6601 caaccctgaa acttatgcta tatgcaaagc agatatgctg ataaaaggcg aaaatccaga
     6661 gcgcataaaa tttggttcta ccttaagcaa tgatcaacaa aacttacaat ttgatttcat
     6721 gcttagcaat ccaccttatg gtaagtcttg ggaaaatgat caaaaaattc taggcgtgga
     6781 aaagaaaggt ttaaattcaa cttgtaatga tccaagattt agtgtaggca ttacaagcaa
     6841 aagcgatgga caaatgatgt ttttgcttaa tatgcttagc aagatgaaat ttgacacccc
     6901 tttgggttct cgtatcgcaa gcgtgcataa tggaagctca ctttttaact cagatagcgg
     6961 tatggtagct ataagaaagc atatcataga aaacgactat cttgaagcta tagtcgccct
     7021 acctactaat atgttttata atacaggaat tcccactttt atatggatca tcaccaacaa
     7081 aaagtcagaa cacaaaaaag gcaaagtcca gcttataaac actacaaatg aagaatattt
     7141 ttcaaaaatg aaaaagtctt taggctctaa acaaaatgaa atgactaaag aacatataga
     7201 aaaaatcact aaattatttt tagaaaatgc aagtaataaa gattgcaaga ttttggataa
     7261 tgaagacttt ggctatacta aaatcatcat agaaaaacca aaaagcatag aagctttaaa
     7321 agatgatgaa aaatttgcaa aactaaaaga caaagataaa atcttagaaa aattacaaga
     7381 attagaacaa aatccacaag actttaaaaa cagagaagaa tttatcaaat ttttaggcgt
     7441 aaagctcaaa aaaagcgaag aaaatctcat cattgatagc gataaaacta acaatactga
     7501 aaaaattcca ctcaaaacaa atatacaagg ctattatgac acagaagtaa agccttatgt
     7561 agcaaactct tggatagcgt gggagagtgc aagtgtgggc tatgaaatac tttttagcaa
     7621 atatttttat acctacacac caccaagaaa gctagaagag ataaataacg aattagaaaa
     7681 gctagaaaaa gaagtgcaag atcttttaag agagattgtg caatgaaaaa tttcaaagag
     7741 agtggcatag aatggcttgg ggaaattccg gagcattggg aagtggtgaa aatcaacaag
     7801 atagtaactt ttgtaaatgg atatgctttt gaaaactttg attttaatcc aatttttgaa
     7861 attcctgtga ttcgtatcgg agatatgcaa aaggaaaaaa ttttatatga caattgccta
     7921 aaaacaaaag aaaaagaaaa attgaaacaa tttttaatta gtaataatga tattttaatt
     7981 gctttaagtg gagcaaccac aggaaaaata gcattttgtg atactgataa taaagcttat
     8041 atcaatcaaa gagttgccat tgttagaagt aaattaaaac ttgtaaaata ttatttttta
     8101 actagaggat tttcattact tattgagctt gcttgtaatg gatctgcaca accaaatatt
     8161 tcaaccaaag aaatagggga atttaaaatt ccacttccac cactaaaaga gcaagagcaa
     8221 attgcaaatt ttttagatga aaaatgcaaa aaaatagcaa atttcataga gaaaaaagaa
     8281 aaactcatca cacttttaaa agaacaaaaa caagccctga taaatgaaac tatcacaaaa
     8341 ggacttgata aaaatataaa tttcaaagat agtggcatag aatggcttgg agaaattcca
     8401 cagcattggg aagtaaaaaa gcttaaaatg ctttttacac ttggtaacgg attaaatata
     8461 actaaagcag attttgtttc ttatggaata ccttgtgtta gttatggtga aattcattcc
     8521 aaataccctt gtcgtcttaa tactactatc catacattgc catttgtaag caaaacatat
     8581 cttgcagata aaccacaatc acttttacaa aaaggagatt ttgtctttgt agatacttct
     8641 gaagatatag aaggttcagg aaattttaca agcattcaat ccgatacacc gatttttgca
     8701 ggatatcaca caataatttt gaaatataga ggcaagatca attctttgta tttttcattt
     8761 ttatttgatt ctatatttac aagaaatcaa ataagaaaag aagtttgcgg agtaaaggtt
     8821 ttcagtatta caaagtctat tttaaaagaa gtgcagtgtc ttatcccacc cttaaaagaa
     8881 caagagcaaa tcgcaaattt tttagatgaa aaatgtgaaa aaatagattt attgatagaa
     8941 aaaaccaaaa aacaaataaa actcataaaa gaatacaaaa ccacactcat aaaccaagcc
     9001 gtttgtggta ggattaactt ataaagggat aaaagatgat tactaaaatt tctatgaaaa
     9061 atgtagcgag ttataaagat gaaacaacac tagaaacaaa taagcgtatt aatttgattt
     9121 atggtttaaa tggagcagga aaaacgcaaa tttctaaatt tttagcaaat caaaaagatg
     9181 aaaaatttaa ggattgtaaa atagaaggtt taatcaatga agaaaattta gtttataatc
     9241 aagattttat tgatgaaaat ttttatgata cggataggca aaaaggtatt tttacactct
     9301 ctgaagaaaa tacaagcata aaacaagaaa ttgaaaattt acaaaaagaa ttaataagat
     9361 taaaatctag tcaagatgaa aatcaaagaa aattagaaga aaaacaaaaa gatataataa
     9421 aaatagaaaa tgattttaaa gataatattt ggaaaatcaa gcaaaatcac agtgataatt
     9481 ttaaagattt ttttgaagga aaaatgggaa gcaaagaaag ttttcttaat tttataaaat
     9541 c
//
LOCUS       DARGED010000059         9460 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.059, whole genome shotgun sequence.
ACCESSION   DARGED010000059 DARGED010000000
VERSION     DARGED010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9460
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.059"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            70..1047
                     /locus_tag="SFZ84_001089"
     CDS             70..1047
                     /locus_tag="SFZ84_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG8203208.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1048..2034
                     /locus_tag="SFZ84_001090"
     CDS             1048..2034
                     /locus_tag="SFZ84_001090"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG8203209.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKT
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2037..2504
                     /locus_tag="SFZ84_001091"
     CDS             2037..2504
                     /locus_tag="SFZ84_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG8203210.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNHFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2608..4074
                     /locus_tag="SFZ84_001092"
     CDS             2608..4074
                     /locus_tag="SFZ84_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG8203211.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIICGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFAMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4102..4830)
                     /locus_tag="SFZ84_001093"
     CDS             complement(4102..4830)
                     /locus_tag="SFZ84_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8203212.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLVDKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4823..5566)
                     /locus_tag="SFZ84_001094"
     CDS             complement(4823..5566)
                     /locus_tag="SFZ84_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8203213.1"
                     /translation="MNQKNIKIFVFFVIIILWGYFSFPIEILKIQDPSGVVSYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5649..5828
                     /locus_tag="SFZ84_001095"
     CDS             5649..5828
                     /locus_tag="SFZ84_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203214.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            5821..6390
                     /locus_tag="SFZ84_001096"
     CDS             5821..6390
                     /locus_tag="SFZ84_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG8203215.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6420..6785)
                     /locus_tag="SFZ84_001097"
     CDS             complement(6420..6785)
                     /locus_tag="SFZ84_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG8203216.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            6908..7900
                     /gene="pheS"
                     /locus_tag="SFZ84_001098"
     CDS             6908..7900
                     /gene="pheS"
                     /locus_tag="SFZ84_001098"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG8203217.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            7897..>9460
                     /gene="pheT"
                     /locus_tag="SFZ84_001099"
     CDS             7897..>9460
                     /gene="pheT"
                     /locus_tag="SFZ84_001099"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG8203218.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQIDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIESLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSCKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYYKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDS"
BASE COUNT         3274 a         1146 c         1676 g         3364 t
ORIGIN      
        1 taagaaaaaa aatattataa tcacaaacat ttttgactta aaaaaatttg aaatacctaa
       61 ggaaaaacat tgttaaaacg acttgcttta ttaattgcac tttcttcatt gatgttgcat
      121 gcctcagatc ttgttaaaat ttatcttaat caaggattag atgctgttgg tgtagcgatt
      181 gaaaaagaat taactcaaaa ggatttttgg ttaagtgaaa taggagataa aaatatttca
      241 cttggatact atgatgataa tgttgctatc gtgcttacaa ataaaacaga taaaattctc
      301 cgtgtttatt cttacgagga cggaaaaata agaaaagatt ttgaacaaaa agaaataata
      361 actggattaa tgggtgataa aaaaatagaa ggagatttga aaacgccagt aggtttttat
      421 gagttaggcc gtaagtttaa tccaggtgat ccttattatg gtccctttgc ttttgccaca
      481 acttatccaa atttacttga taaagtacaa ggaaaaacag gtggtggtat ttggatccat
      541 ggctatcctt tagatggttc tagacttgat gaatttaaaa caagagggtg tattgcttta
      601 tttaataata atttggagaa atttgcaaaa gttgtgcaag ataaaaaagt ttttgttatg
      661 acagaagaaa aagaaaaaat tagagctaaa aaggatcaaa tcgctagttt attggctgat
      721 ctttttacat ggaaactagc ttggacaaat agtgacacta atgcctattt aagtttttat
      781 gatgagcaag aatttaaacg ttttgataaa atgaaatttg aacagtttgc ttccatgaaa
      841 aaatctattt tttctcgtaa agaagataaa aagattaaat tttcagatat taatatcagc
      901 ccttatccga atttagaaaa tgaaactatg tatagaattt cattttatga ggattattac
      961 actaaaaact atcagtttag aggcgataaa attttatacg ttaagataga tagtaaaggt
     1021 aaaatgaaaa ttttagcaga gcaataaatg tctttaataa aaattgatca aaaagcttat
     1081 gaatacaatt taaggcatat tgctaaaaaa atagggagtt ttcaaagatt aatttgtgtt
     1141 tttaaggata atgcatatgg acatggagct aagcttttag ctccattagc caaaaattta
     1201 ggagtttctt ttgttgctgt taagagtgaa gaagaagctc gagaaatcga agaatttttt
     1261 gagaatatat taatactatc acatcgtcct catggtaatg aaaattctcg atttatttat
     1321 gctttaaatg acatttctca agtaaaaaat tacaagcaag atataaaaat acatctaaaa
     1381 atagatacag gcatgcatcg caatggaatt tgtgtagaaa atttagagca tgctataaat
     1441 cttattcaag gtagtgattt aaaacttact ggaatgttta cacattttgc tagtgcagat
     1501 gaaatggatg gaagtttttt tgttcaaaaa gaaaattttc aaaaagctaa aaagatagta
     1561 aaaaaatatt tttcaaattt attatttcat tcgtataatt ctgcagcatt atttagaggg
     1621 aaaattcctg aagatgaata ttgtagagtt gggcttgttc aatttggata tggggattca
     1681 aatttaaaaa gagttttaag tttgtatgct catagattaa gtcaaaggat tttacaaaaa
     1741 ggacagagca taggatatgg aggcattttt actgctgcaa aggatatgga agtagcaact
     1801 tatgatttgg gttatgctga tggtcttttc cgttacaatg gaaaagggga gttggtgctt
     1861 ggaaatggaa aaacaatgct tggaaagatg tcaatggata gtttttcttg tgaaaattct
     1921 ggtgaggaaa tttgcgtgtt taaagatgct gatatttggg ctgatttttt tcatactatt
     1981 aactatgaaa ttttagtaaa attaaatcct aatattcaaa gagttctagt ataaatatgt
     2041 ttaatatagt tttagttcac cctagaatac cgcaaaatac aggtagtata ggtagaatgt
     2101 gctttaatgc tggttttaaa cttcatattg ttaaaccaac tgtttttgat atttcacaaa
     2161 aggctgttag aagggcagga cttgattact gggataaatt agagcctatt atttgggaga
     2221 atcttgaaga atttttgaat gaaaatatga tttataaaaa tcactttttt ttcgcaacaa
     2281 ctaagagtca aaaagcttat tttgatgcag aatttcaaaa aaatgatttc ttattctttg
     2341 gaagtgagag ttatggtttg cctatggaat taatgcaatt aaactgggaa aatgctataa
     2401 ctatacctat gaaatcttat ggaagaagtt taaatttagc cacaagtgtt ggtataatct
     2461 cttatgaagc tttaagacaa aattttagaa attttgcttc ttaaaagttt caaatttaca
     2521 caatagctta aaacaaataa aatcataaag tcctttttat aaaaattatg ttaaagtaaa
     2581 atttagatta ttttttgagg agtttggatg aaattagata ttatgctaga ttttgccaat
     2641 aaagcgtctg atattatagc taataagatt gtcccaaata cagacattat tatggtagtt
     2701 ttacttatta tttgtgggct ttattatagt tttttaactc gctttgttca gtttcgtatg
     2761 ttgagttctg tatttaaaat tcttacagaa aaaaacgaag gacacgctaa agaacatatt
     2821 tcaccttttc aagcattaat gatctcaact gcttctagag ttggtatagg aaatattgct
     2881 ggaatttctt tggcattggc tacaggtgga gctggtgctt tattttggat gtgggttatg
     2941 gcattttttg gtggtgcctc agcatttgct gaaagtacct tagctcaagt ttacaaatca
     3001 aaagatgata caggcgggtt taaaggtggt ccagcttatt atataaaaaa agccttaggc
     3061 tcacattttt ttggagcttt ttttgctttt attcttatta ttacttatgc ttatggattt
     3121 aatggacttc aaagtcaaac aatgacttcg tcttttaaag tttattatga tatgtttaat
     3181 ccaaatgctg ctgtagattt tgcatcaagt tcttggccaa tgattattgg tattgtttta
     3241 actatttttg gtgcatggat gtttttttct caccatacta aaataggtaa aattagttct
     3301 ttaattgttc cttttatggc tttagcttat gttttacttg ccgtgattgc tgttttaatg
     3361 aattttgata aaattccttc tgtgattcat atgattttac aaagtgcttt tgattttaaa
     3421 gcgatttttg gtggttttgc tggttctgct ttggttatag ggattaaaag aggacttttt
     3481 tcaaatgaag cgggtatggg ctcggcacct aatgcagctg cagcagcttt gacaagtcat
     3541 ccagctaaac aaggtgttat acaagccttt tcagttttaa ttgatgttgt tgtttgtaca
     3601 agttctggat ttttagttct tttttctatg gcatatttag gacttggaga aagtaaaatt
     3661 gatggtggaa tgcctttagt tcaagaagct atgcgtgagt attacggtag ctttggaatc
     3721 cattttatta ctatagctat tgttcttttt gcaataactt ctttaatagg aaattattat
     3781 tatgctcaag ctaatgttaa atatttaaca aattccaaat ttgcaatgaa tttgtttaga
     3841 attacagctg tggctatgat ttttataggc tcacaaatga atttaaaact tgcttggaat
     3901 ttggctgatt tgactatggc tttcatggca acgacaaata ttatatcttt attgctttta
     3961 ggtggtatag taaataaagt tttaaaagat tttaatatgc aacaaaaatc tggtatagat
     4021 cctaaattta atgctagcaa acttggaatt aaaaacgctg aatgttggga ttaaaattca
     4081 taagccttag tggcttatga attaatgatt taaaaccttg tttaaaaatt ctctcaatct
     4141 ttcattgcta ggattttcaa atacttcttt agggcttgca tcaacagcaa tttttccttt
     4201 atccataaaa aatatacgat tggcaacatt tctagcaaag cccatttcat gagttactac
     4261 aagcatagtt aaaccttctt ttgcaacatc tttcataatg cttagaacct cgcctatcat
     4321 ttcaggatct agagctgaag taggttcatc aaataaaata acatcaggat tcatcatcaa
     4381 gcttctagca atagctatgc gttgtttttg tccgccagaa agcttatggg gcattatatt
     4441 ttctttgtct actaaaccca ccttagcaag aagtaatttt gcttttttta tggcttcttc
     4501 ttgacttaaa attcctgttt taatgggcgt taaacataaa ttttccataa catttttatt
     4561 ggcaaaaaga ttaaaatgct gaaataccat gctaactttt tgcctgatct tattaatatc
     4621 aatttcttta tcaagtatgt tttgcttatt gattaaaatt tccccactat cagctagttc
     4681 taagcgattg atgcagcgta aaaatgtact ttttccgcct ccacttggac ctatgatagc
     4741 tattacatcg ccttttgaga ttgtagtgtt aatatttttt aaaacttcta attctccata
     4801 ttttttttgt aaatttttaa cttcaatcat ttttattcat cctaagttca agtttttttg
     4861 caaaatagct aaaaattttt acacttacat aataaacaag tccagtgaaa ataataggtt
     4921 ttggattgta aagtacggct tgcaagcttt gactttgcat ggtaatatca ataacactaa
     4981 taaatcctac aacagaagtt tccttaaata aagaaataaa ttcattagct aatgcaggta
     5041 gaatgttttt agtagcctgt ggaagaataa tttctttcat tgaagttttg taatcaagtc
     5101 ccattgctct tgcagcttcc atttgtccct tatctacact attaatgcca cttcttacaa
     5161 tttctgctat ataagccgag ctattaagtc ctagtgcaag aatggctgca taaaggttat
     5221 ctataaaagt aaaaattaca aaagcaaaaa tcatcaattg taaaattact ggtgttcctc
     5281 gtataatgtc tatatattca tctataataa aattaagcgt tttaaattta gagaagtgta
     5341 aaatagctaa actaaaacca ataatcactc cgataataac agcgcaagca gttaataaaa
     5401 gtgtaataag atagcttttt aaataagctt ttgcattttc tgtatagcca tagcttacaa
     5461 ctccactagg atcttgaatt tttaatattt ctattgggaa agaaaaatag ccccataaaa
     5521 taataataac aaaaaaaaca aaaattttta tatttttctg attcaatttg caaacctttt
     5581 cagagaaatt atttaaaaaa agattttata gaaatatctt tgaattttct ctaaagattt
     5641 aaaaaaatgt gttagaattt cccaaaaata aggttgtatt tatggaaatt ttagatttca
     5701 ttctaatagt tatttttgtg tttttaatga ttgttttggt tataggtttc aatcatcaaa
     5761 tgatgcaaaa aaacaaagaa agagaagaaa gatttaaaaa atataaaaaa ggagaacaaa
     5821 atgagtaaaa aagtattaat tccattggct caaggttttg aagaagctga atttatagga
     5881 attgcggatg ttttaaaacg agcaaaagag ttaaatccag atttggaagt tgttatagct
     5941 tcgttaaaca gtgagttatt ggtaaaaggt gctaatagca ttagtataaa agcagattgt
     6001 tctatagagg atgttgatat agaaaattta gatgctattg ctttggcggg tggctttgaa
     6061 ggtatgatga atcttaagaa ttcaaatgtt attttaaata tcattaaaca acttcatagc
     6121 aaaaataaaa ttgttgccgc aatctgtgct tctcctatag ttttaaatga agcaggtgtt
     6181 ttagagggcg agtttgcttg ttatcctagt tgtgaagttg gacttaatgg aaatcgtgtt
     6241 aacaaggctg tagttgtaaa taaaaatgtt ataacttcag caggtccagc tacggcaatt
     6301 ctttttggtt tagaactagc taaaaagtta tgcggtgatg aaatttatca aaaattatat
     6361 gagggaatgt tgctaccttt gacaaaatag tttaaatggt agtttttcta ccatttaaac
     6421 taaaataaag cttgaggatt ttcttttttt gttttttcct taggcagttc aaaacctcca
     6481 agcatatgaa aatgcaaatg aaaaacttct tgtccactat tttttccaca gtttgttacc
     6541 aagcgatatc cacttttatc tacacctaaa agaacagcta attcttgtat gaaacttgtc
     6601 attttggcca taagttcagg atcaaattct tgaaagtctt taaaatattt tttagggatt
     6661 ataagtatat gtatgggtgc tttgggtgca atatcatgaa atgctagaaa atcgtcactt
     6721 tcaagcactt tattgcatgg aagtttacct tcaactatga gttcaaaaat tgttttttct
     6781 tgcattattt atcctttttt attgttggtt tgatacaatt atatctttaa agtttggttt
     6841 ttatgctgaa tttaaaatag tttttaatag aattagaact tgaaatattt tatttaaggt
     6901 aagaaaattg caaaatttta tagaacagat tcaaaaatgt gagaatttaa atgatttgga
     6961 agccattagg atttccgttc ttggaaaaaa aggtatttta acagaaggct ttacaaagct
     7021 taaagagtta gaagatgagg cgaaaaaaga atttgctgct aaattaaatg cacaaaaaga
     7081 aatatttaat gaggcttatt tagccaaatt taaagatttg gaaaatcttg ctttagaaga
     7141 aagaatgaaa caagatgctt taaattttaa ctattttgat gaaagtatta caacaggtgc
     7201 cttgcatcct gttatgagca ccatggataa aatcatagaa tattttatag ctttgaattt
     7261 tagcatagaa aaagggcctt taatagaaga tgactttcat aattttgaag cgttaaattt
     7321 acctaaatct caccccgcaa gagatatgca agataccttt tattttgatg ataaaaggct
     7381 tttaagaaca caaacttcgc cagtgcaaat acggacaatg cttgcacaaa aacctcctat
     7441 taggatgata gcccctggtg ctgtatttag aagagatttt gatattacgc atactcctat
     7501 gtttcatcaa gttgaaggcc ttgtggtgga agaagggcaa aaggttagct ttgcaaattt
     7561 aaaaagtgta ttggaagatt ttttgcgtta tatgtttgga gatgtgaaag ttcgttttcg
     7621 tccaagtttt ttcccattta cagaaccttc tgctgaagtt gatatttctt gtgtattttg
     7681 caaaggaaag ggttgtagag tttgcaaaca tacaggttgg cttgaagttt taggatgtgg
     7741 aatagttgat cctaatgttt ataattttgt tggttatgaa aatgtaagtg gttatgcttt
     7801 tggattggga gtagaacgtt ttgcaatgct tttgcatcaa attccagatt taagatcttt
     7861 atttgaaggt gatttgagat tattggagca gtttagatga taattactaa aagttggttg
     7921 aatgattggt tagaacttga agaaataagt tcagataaaa tagctaaaac tttaaactct
     7981 ataggtatag aagttgatag ggttggcgct ttaaaggctc cagataaagt tgttgtaggc
     8041 tatgttaagg aaaaaattaa acatgaaaat tcagataaat taagcatttg tcaaattgat
     8101 atcggaagtg aaaccttgca aattgtctgc ggtgctgcga atgttgatgc aggacaattt
     8161 gtagctgttg caactaaagg tgctatcatg ccaaacggta tggaaataaa agaagcaaaa
     8221 ttgcgaggag tggattcttg tggtatgctt tgttctagtt tagaactggg ttttgaaaaa
     8281 atcaatgaag gaattatgct tttagatgag agtataggga aattagaact tgggagacct
     8341 ttaaatactt atgaaatttt taatgatgag ctaatagaag tggaacttac tcctaatagg
     8401 ggtgattgtt taagtattta tggtatagct cgtgatttag ccgcagcttt aaatttaaat
     8461 ttaaaagaac caaaaccatt taaagaaagt gaaaatgttt taggtatcgg tagaattttg
     8521 cgcttagcag ctgagaaaga acttaatgga ctttataatt atcgagccat agagctaaaa
     8581 gaagaaattc aaacaaattt attgcttagt ttaagacttg ctcaaattga aagtttggga
     8641 aaaaattcca tagaaaattt attaaattat gcaacgcatt caactggtgt tctttttaat
     8701 gcttatgatt taagtagttt ttctgaaaaa gatgaagaat ttaccattaa tttaagcaag
     8761 caagtgcatg gagaaacaaa agtatcttgc aaagataaac ttttaagctt tagcggaatt
     8821 ttccaaaata atgaaagtag atgtaaagat gattctaaaa taattattat tgaggctaat
     8881 tataccgatc cattggtaat tgcagatgct aaaatatatt ataaagatca agatgaaaaa
     8941 atgctttata gaagttttag gggaagtgaa cctaaattaa atttaggaat ggattttttg
     9001 cttggtattt ttgagcagat tccaaatctt gttatttata gttcttctca acaaatttta
     9061 actgacaaag aattaccaat cataccaata agtattgaag gtattagcga tataatagga
     9121 caaaatgttg ataaagatga agtattaaaa atattaaaga aattaggttt tgagctcata
     9181 ctttcaggtg aagggcttat aaatgttaaa gcacctttac atcgtcctga tattaaaaat
     9241 ttatcagata tttgcgagga agttgtaaga attataggta ttgataatat tgcttccaag
     9301 ggtttagaat ttatagaaaa aaatcgttta aattctgcat ataaaaatta tattgagttt
     9361 ttaaatttaa gaaaaagagc agtagctagt ggttattttg aaagcttaca ttatgttttg
     9421 gataatggag aagaacttaa aagattaggt tttgactctg
//
LOCUS       DARGED010000060         9422 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.060, whole genome shotgun sequence.
ACCESSION   DARGED010000060 DARGED010000000
VERSION     DARGED010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9422
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.060"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..998
                     /locus_tag="SFZ84_001100"
     CDS             <1..998
                     /locus_tag="SFZ84_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8203219.1"
                     /translation="YKKPYQVIFKNIDKLGKTFYLETLLIPILDKNNELIEIVAFSHD
                     VSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFEKKMQIALEKNEKDI
                     KIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDEKGFAEIYSQSKDMI
                     KNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHVNINIVSKSDYEVLA
                     YENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDK
                     IFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACFEIFLKLKERVE"
     gene            1001..1681
                     /locus_tag="SFZ84_001101"
     CDS             1001..1681
                     /locus_tag="SFZ84_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8203220.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGEEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            1807..3273
                     /gene="ccoN"
                     /locus_tag="SFZ84_001102"
     CDS             1807..3273
                     /gene="ccoN"
                     /locus_tag="SFZ84_001102"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG8203221.1"
                     /translation="MHPGNVLNYDYTVTRYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            3286..3951
                     /gene="ccoO"
                     /locus_tag="SFZ84_001103"
     CDS             3286..3951
                     /gene="ccoO"
                     /locus_tag="SFZ84_001103"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG8203222.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            3956..4219
                     /locus_tag="SFZ84_001104"
     CDS             3956..4219
                     /locus_tag="SFZ84_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG8203223.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            4219..5082
                     /locus_tag="SFZ84_001105"
     CDS             4219..5082
                     /locus_tag="SFZ84_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8203224.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            5079..5300
                     /locus_tag="SFZ84_001106"
     CDS             5079..5300
                     /locus_tag="SFZ84_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG8203225.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            5297..5398
                     /locus_tag="SFZ84_001107"
     CDS             5297..5398
                     /locus_tag="SFZ84_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203226.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            5395..5997
                     /locus_tag="SFZ84_001108"
     CDS             5395..5997
                     /locus_tag="SFZ84_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203227.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            5984..6505
                     /locus_tag="SFZ84_001109"
     CDS             5984..6505
                     /locus_tag="SFZ84_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8203228.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            6502..8868
                     /locus_tag="SFZ84_001110"
     CDS             6502..8868
                     /locus_tag="SFZ84_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8203229.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKIKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFIYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQNEYCPYKLIYKKELK"
     gene            8865..>9422
                     /locus_tag="SFZ84_001111"
     CDS             8865..>9422
                     /locus_tag="SFZ84_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG8203230.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKIP"
BASE COUNT         3345 a         1051 c         1728 g         3298 t
ORIGIN      
        1 catataaaaa accttatcaa gttattttta aaaatattga taaattaggc aaaactttct
       61 atcttgaaac tttattaatc cccatattgg ataaaaataa tgaattaata gaaatagtag
      121 cattctctca tgatgttagt aattctttta agcttaatga agagcttgct ctaaatcacg
      181 ctaaattaag agaattaagt attaatcttg aaaatacagt taaaaatcac caacaagaat
      241 ttatacagtt aggtaaaaaa tttgagaaaa aaatgcaaat tgccttggaa aaaaatgaaa
      301 aagatattaa aatagcatat gaagagattt tgaaatcttc attagaacaa atgattagcg
      361 atatagcaca tcaatggaga caaccgttaa atgagctcgg tattgccatg tttcaaatga
      421 agcaaaatct taaagatgaa aaaggatttg ctgaaattta ctcacaatca aaagatatga
      481 ttaaaaatat gtcagaaaca attgatgtgt ttagaacttt gtttaacaaa ggagtagagc
      541 agtgtgtatt tataaaagag actttaaata aagccttgga aattgctttt gaaactatag
      601 aaaaaaatca tgtaaatatt aatattgttt cgaaaagtga ttatgaagtt ttggcatatg
      661 agaatggttt aataagagtt tttcttaatt tgattttaaa ttcaatagaa gcatttaaaa
      721 acaaaaaaag gaaaatcata acaataaatt tttcaaaatt tggaaaaaat tatctgaaaa
      781 ttacaataaa agataatgct ggtgggattg ataaagaaaa tttagataaa atttttcaac
      841 cttattttac aacaaaacat cctagtcaag gtataggagt aggactttat ataagtagac
      901 aaattatcga aagtttccaa ggaaaaataa aagttaaaaa tggaaaagac ggggcttgtt
      961 ttgagatatt tttaaaacta aaagagaggg tagagtagaa atgtcacaag aatgtaaaga
     1021 attgataata ttagtagttg aagatgaggt taaggctaga gaatcaatga ttaatatatt
     1081 aagcgaacgc tttagtaaag taatcggagc tcaaaatgga gatgaggggc ttaaaaaatt
     1141 taaaaaattt aagccagatt tagttatcac agatattgct atgcctatta tggatggact
     1201 ggatatggca agagagatta aagaaatttc agatgatgtt ccaattgttg ttcttagtgc
     1261 gtattcagag aaagagagac ttttgcgttc tattgatatt ggtatagata aatatttgat
     1321 taaacctgtt gatatagaag agttgtttaa agttttagat tatctgatag gtgaaaaaat
     1381 tgaagcaaat atgcttgtaa aaatttctga agaatatcaa tttaacaaaa ctaaacgaac
     1441 tttaatttac agtggtgaag aaattgtttt aactaaaaaa gaattggctt ttatttcttt
     1501 gcttttaaag caacctgggg ctttggtttt gcatgaagat attaagaaaa atgtttggat
     1561 aggtgaacat gtgagcgata ctgctgttag aacttttata aaaagagtaa gagataaagt
     1621 gggtgaagat tttataaaaa atgtgccaag tttaggttat aagataaata tcaataaata
     1681 agactgattt aaccttaaaa tataaagcat aacaaatgat taacaaaatt gttgttttta
     1741 agaaaaaatg tataattaat attctataat attctcttgt tatcaaaaat tttaaggaga
     1801 aagtcgatgc atccaggtaa tgtattaaat tacgactata cggttacaag atattttatg
     1861 tttgcgacca tattgttcgg cattgttggt atggctatag gaactcttat agcttttcaa
     1921 atggcatatc ctaatttaaa ctatttagca ggagaatatg ccactttttc aagacttaga
     1981 ccacttcata cttcgggtgt gatttttggt tttatgcttt cagggatttg ggcaacttgg
     2041 tattatatag gtcagcgtgt tcttaaagtg agtatggctg agtcaagatt tttaatggct
     2101 gttggtaagc ttcatttttg gctttatatg cttactatgg ttttagctgt tatatctttg
     2161 tttatgggtg tgactacatc taaagaatat gcagagcttg agtggccttt agatattctt
     2221 gttgttcttg tttgggtttt atggggtgta agtatttttg gacttattgg aattcgccgt
     2281 gaaaaaaccc tttatatttc tctatggtat tatatagcta catttttagg tatagctatg
     2341 ctttatcttt ttaacaacat ggaagtacca acttattttg ttactggaat gggtaaatgg
     2401 tggcatagtg tatcaatgta tgcaggaaca aatgatgctt tagtacaatg gtggtatgga
     2461 cataatgctg tggcatttgt atttactgtg ggtattattg ctcaaattta ttacttcttg
     2521 ccaaaagaaa gtggtcagcc gattttctct tataaactct ctttatttgc attttggggc
     2581 ttaatgtttg tttatctttg ggcaggtggt caccatttga tttattcaac tgtacctgat
     2641 tggatgcaaa ctatgggttc ggttttctct gtagtattga ttttaccttc ttggggttca
     2701 gcgattaata tcttgcttac tatgaaaggt gagtggagtc agcttcgcga gagtccgttg
     2761 attaaattta tgattttggc atcaactttc tatatgttct caacacttga agggccaatt
     2821 ctttcaatta aatctgttaa tgctttagca cactttacag attggattcc aggacatgtt
     2881 catgatggaa cattaggttg ggtaggattt atgactatgg ccgcgcttta tcatatgact
     2941 cctagagttt tcaaaagaga gctttatagc aaatctttaa tggaagctca attttggatc
     3001 caaaccacag gtatagttct ttattttgct tcaatgtgga ttgcgggtat tactcaaggt
     3061 atgatgtgga gagcgacaga tgagtatggt aacttgcttt atagctttat tgatactgtt
     3121 gtggctattg ttccttatta ttggattaga gcgattggtg gattgttgta tcttatcggt
     3181 ttctttatgt ttacttataa tatttacaaa acaattgctt gtggaagagt gcttgataaa
     3241 gaaccaaaaa gcgcttcgcc tatggcagca taaaaaggag aaaatatgtt tagttggtta
     3301 gaaaaaaatc cattcttttt tgctgtagct gtttttgtag tgattgctta tgcaggcata
     3361 gttgaagttt taccaaattt tgcagaaaat gcaagaccaa ttgaaggtaa aaaaccttat
     3421 acggttttac aacttgcagg gcgtgcagta tatattaaag atagttgtaa tgcttgtcat
     3481 tcacagctta ttcgtccatt taaatcagaa acagatcgtt atggtatgta ttctgtaagt
     3541 ggtgaatttg cttatgatag accttttctt tggggctcaa aaagaacagg acctgatctt
     3601 gctcgtgtag gaaattatag aacggctgat tggcatgaaa atcatatgtg ggatcctact
     3661 tctgttgttc cagattctat tatgccttca tataagcata tgtttaaaaa taatgcagat
     3721 attgaaactg cttatgctga ggctttaact gtgaaaaaag ttttcaatgt tccttatgat
     3781 gcagaaaatg gaacaaaact tggttcttgg gaagatgcac aagctgaagt aaaagctgaa
     3841 gctcaggcta tagttgatca aatgaaaaat caagaagtaa aagatgcttt tgctaaaggt
     3901 gaaatcaaag aaatagttgc tttgatcgct tatttaaata gtttaaagta agatgatgga
     3961 acatttatca atagtttttg atgtgattaa aaatttaatc acatttgatt tagcaacagt
     4021 tcaaaaacat gagtgggaga ttttccaagg ttatggtttt tttgcactcg tgatgttttt
     4081 gtcaatagta ttatatgcgt atttgtatca tttatataga acagaaaaaa aaggcgagag
     4141 aaattatgaa aattatgcaa accttgcctt aaaagatgat attgatgata gtgtattaga
     4201 aagtaaaagg agtgcttaat gcaatggtta aatttagaag ataatgttaa tctcttatct
     4261 ttaattggag ctattcttat cattttaatc acactggtta ttgtgggtag aatgtttaag
     4321 caaatgaaag aaaaaaaagg cgagtcagag cttagtgaac atagttggga tggaatagga
     4381 gagtataaaa atgctgttcc tactggttgg gctgtggtat ttttcctgac tattgtttgg
     4441 gctatttggt attttctatg gggatatcct ttaaattctt tttcaagtat aggtcaatat
     4501 aatgaagaag tagcaactca taatacaaaa tttgaagaaa aatttaaaaa tttatctcct
     4561 gaagataaaa tagcaatggg tcaaaatatc tttttagttc agtgttcggc ttgtcatgga
     4621 attacaggag atggtatcaa tggtaaagct caaaatttaa atatttgggg tagtgaagaa
     4681 ggtataatca atgtaattaa acatggttca aaaggtatga attttccagg tggagaaatg
     4741 cttggtgctg ctgatttagg tgtagcagaa gaagatatcc ctgctattgc tgcttatgta
     4801 gcaaaagatc tttcagctat taagaaaact gcaaatgaaa atttagtagc aaaaggtaaa
     4861 gaagcttatg caacttgtgc agcatgccat ggagaagatg gaaaaggtca agatggaatg
     4921 ttcccagatc ttacaaaata cggttctgca gcttttgtag tagatgtttt acatagtggt
     4981 aaggctggtt ttataggaac aatgccgagt tttccaacac ttaatgatat tcaaaaagaa
     5041 gctgttggcg agtatgtaat ttctctttca aggggtgaat gatggaaaat aataatagat
     5101 gcgtgttttc tctttcaggt gttacaggta tgttaattgc tacggttttg ttgcttgcta
     5161 tcttagcagt tttaactatt tggggtctta aagctcagca agaagtgatg caaaagccat
     5221 atagtcttaa agatgtacaa agtgtaaaga tgtttggttc aaaagaacaa gatcatagaa
     5281 gtataaagga agcacaatga gtaaggcttt ggaatattta attgttattg gtttagttgt
     5341 tgctgctgca atcaccgctt ggtcggtttt gaccgtaaat catcttcata taggatgaaa
     5401 aaaatattac aagatggctt ttttttagct atcttcttct ttgttttatt gccttctagg
     5461 gtttttgctc ttgatgctgt gctttttaat gaaaatattt taagtcaaaa agtaagtaac
     5521 gagattaatc ttataggaaa agagctttac caaaaaagta atatttttat cggcgttatg
     5581 gttggtgata aaactgaaat tgaaacttta ttaaataaac aaaaagaact tcctcaatct
     5641 tatatattgc ttcttttgtc aaaaaattct cacaaagttg atatagtggg ctcaaaaggt
     5701 gctttagctt tgattgataa agaagctgtg cttagtcctt atcctggaac aggatctatt
     5761 ttgccgatat tagctacaaa taaaggtgat atttataatg ctgctatact taatggttat
     5821 gcagatattg tagatcgtgt ggcaaaatcc ttgggattac aattagaaca ttctataggt
     5881 aatgcaaatc gtgatactat caatatttta agaatactta tctatggatt tatttgcttt
     5941 gcattgttat actatgcaca aagaagaata aagaggaaaa aaaatgttag aaactaaaaa
     6001 aagtttttgg ccttatggta ttttgctttc acttttggct ataattattg cttgtattgt
     6061 aacgattttt atagcaagtc accatcctgt gtatgaggat gatttttatt ttgactctta
     6121 tcaaaatgtt gaaaataatt acaatcaaat acaaaaacaa caagtaaatt ttgataaatt
     6181 ttttaaagta aattttcaaa atgataaaat cacttttata ggtaaaagaa aaattcctag
     6241 ttatgaagtg gatcaaaatt cctatgttgc aaattttaaa atttctgcat tgcaaaatat
     6301 aaattctaat gatttaaaag ttcaagttct tcttacaaga ccattcacta aaaattttga
     6361 tcaaaagtta gaaggacaag ttaaaaatgg aattttaagt atcgctttac ctaaattaga
     6421 taaaggtaga tgggagctta agctaaagtt ttatgcaaat caagaaacag tgggtttttt
     6481 tagctacgaa ttaaatgctc aatgaaatta agaattttta gctcttcaag gcaaattaga
     6541 gaatattata atcaaaaaaa acagcaaaat gctttattag atagtgctat tcatataggt
     6601 gaatttttag ataaagtttg tttgagcaat tttcataaag caagttctta tgaaagtttg
     6661 cttttaatgc aagaagcttg tctaaaaagt aaggatttag aaaaaaaact aggaatttcg
     6721 gtagaatttt ttgctttttt gaaaaataac gaatatcttt tttctttttt taaagaactg
     6781 agtttggaaa aaaaaagcat agaagatctt aaaaacaatg attattatgc cacctataat
     6841 gaacatttgg aaattttaga tgaggtatat aagaattatc ttgctttgct tgaaaagaat
     6901 tctttttatg atgatctttc tttacctaaa aattacactc ttaataaaga ttttttagat
     6961 gagtatgaag ctatagttta tgatttgcaa ggttttttaa gtaaatttga agaaaattta
     7021 ttaagtgaaa tttctcagat taaagaagtg gttttaagtt ttaaaacgag taaatttaat
     7081 cttgaatatc ttttaaaact tgatttttta aaaatatttg atttaaaaat aaacactcat
     7141 tatgaaatca atctttcaaa acaagagatc ttaaaagaag aaatttttaa aacaaaaaat
     7201 tcaaaaatta aactcaaatc ttttgaatta agggctttgc aatgtgcttt tgttatggat
     7261 gaaatttcac attttgtacg caaaggttta aagcctgaaa atattgcagt tataactcca
     7321 gatgaaagtt tttgtgagtt tttaagactt tttgataaag acaatatgct taactttgca
     7381 agtggaatta gtattaaaga gagtttgttt tatcaaaaat ttcaagcact ttatgaaagt
     7441 gctagtagtg cttcttttat ttataaaaat caagaggatt attttgaaga cacgcagatg
     7501 atttttgatt atcacaatac gcttttacat tctttaaaac ttgattttat agagtttaaa
     7561 aagtattttg atgagaaatg tgattttgaa tattttgaaa aattacttgc tttgttttta
     7621 gaaaatgaaa agcaagagct tatttatttg atacgaaaag aactttattt tattaaagat
     7681 ttattgaaaa atcagtcttt aactcttaaa gagttgatcc atcttttttt catgcaaatt
     7741 tcacaacttt cccttagtga tgtaggtgga ggtaaggtta cggtaatggg acttttagaa
     7801 agtcgtgggc tttgttttga tggagtgatt ttggttgatt ttaatgaaga atttattcct
     7861 aaaagaagtg ttaatgagct ttttttaaac aatgaagtgc gtaaaaaagc agggttgatt
     7921 agctatgata gaagagaaaa tttacaaaga ttttattatg aaagcttgat gaagaatgct
     7981 ttagaagtaa gtatttgctt tgtggaaaat gaagaaaaaa gcaaatcacg ttttttagat
     8041 gaacttgatt ttgacttttt ttatgaaact catatccacc aaaaagctta tcttaatgct
     8101 ttaaaattag actatgaagg cataaaacct aatctaactc ctataaaagc tcctatttta
     8161 aagcataatc ctttcgagtt tccgctttct tttagtcgtt ttaatttatt ggaaaatcaa
     8221 aaaagaactt attattatcg ttatatttta aatttagcag aacctagggt tttaagcgag
     8281 gaaagcaaag cgaaaaatca aggaaatttt atccataaaa tgcttgaaat ttattataaa
     8341 aattatgcaa ataatgattt tgatataaaa gtttttgcaa atttattgga taaagaatat
     8401 caaaaataca atatcagtga acttgatctt gaagtattta aattaaaatt tatacaattt
     8461 gctaaaaatg aaaaagagca tttttcaaaa ggcttttatg tcgcacatac agagcttgag
     8521 ttaaacaata ttttaaagct cggaacagat agtataaaac ttaagggtac tatagatcgt
     8581 atcgatagtt caaaagaagg taatttgatt attgattata aaagtggaaa agtgccaagt
     8641 aattcttatc aacttgcttt ttaccaagct ttatatgatg aaaatgcaag cgtgggtttt
     8701 tatgatttaa atagtatgca aatattgcat caaaaagcca aaagtttaga tgagctaaga
     8761 gaaagactta aagatttagt tcttatgagt aaggaagaaa tagagtttga aaatgaacaa
     8821 aatgagtatt gtccttataa actcatttat aaaaaggaat taaaatgagt caatttgagc
     8881 cttttttggc attagaagcg agtgcaggaa gcggaaaaac ctttgccttg agtgtgcgtt
     8941 ttgtagcact tattttaaaa ggagctagga ttaatgaaat tttagcttta acttttacca
     9001 aaaaagctgc taatgaaatg caaaaaagaa ttattgagac ttttttaaat ttagaaaaag
     9061 aaaataaaac cagtgaatgc aatgaacttt gcaagctttt aggtaaagat aaagaagagc
     9121 ttatttcttt aagagatgct aaaaaagaag aatttttaag aacagagtta aaaattagta
     9181 cttttgatgc ttttttcgga aaaattttgc gtgtttttgc tttaaatttg ggcttaagta
     9241 gtgattttac aatgagtgaa gaaaggcttg atgtaagaga gattttttta aaacttctta
     9301 aaaaagatga attaaaagat ttggcttatt acattaattt agttgatgag aaagaaaatt
     9361 tttttaacga gcttgaaaaa ttttatgaga atgcttattt tcaaaatcgt cctaaaattc
     9421 ca
//
LOCUS       DARGED010000061         9330 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.061, whole genome shotgun sequence.
ACCESSION   DARGED010000061 DARGED010000000
VERSION     DARGED010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9330
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.061"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1195)
                     /locus_tag="SFZ84_001112"
     CDS             complement(<1..1195)
                     /locus_tag="SFZ84_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8203231.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLKNNDQNLNLDKNLNKEIVKDTQNLVSNLTQKDFNLNKEPKNNNKENKDIKQN
                     FFDQKL"
     gene            complement(1211..1534)
                     /locus_tag="SFZ84_001113"
     CDS             complement(1211..1534)
                     /locus_tag="SFZ84_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203232.1"
                     /translation="MSKPLNEEIFVEFKSDLAERKNEVLLQVLELLETFRSDENEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILTALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            1669..3477
                     /gene="typA"
                     /locus_tag="SFZ84_001114"
     CDS             1669..3477
                     /gene="typA"
                     /locus_tag="SFZ84_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG8203233.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGSDENPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            3477..4124
                     /locus_tag="SFZ84_001115"
     CDS             3477..4124
                     /locus_tag="SFZ84_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG8203234.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLTQKELQIDALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEISKANKNPSFENEEQIYIK
                     LTDKNFTLNHIFSKENHYLIATLSNPFFIDIKKDFENNFKNLEENLNSIKNKLFK"
     gene            4302..5345
                     /locus_tag="SFZ84_001116"
     CDS             4302..5345
                     /locus_tag="SFZ84_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8203235.1"
                     /translation="MKKNILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
     gene            complement(5369..6718)
                     /locus_tag="SFZ84_001117"
     CDS             complement(5369..6718)
                     /locus_tag="SFZ84_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG8203236.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYIKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLTQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            6821..8023
                     /locus_tag="SFZ84_001118"
     CDS             6821..8023
                     /locus_tag="SFZ84_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG8203237.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            8020..8721
                     /locus_tag="SFZ84_001119"
     CDS             8020..8721
                     /locus_tag="SFZ84_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG8203238.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(8751..>9330)
                     /locus_tag="SFZ84_001120"
     CDS             complement(8751..>9330)
                     /locus_tag="SFZ84_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG8203239.1"
                     /translation="LTDISQDNFNLPSKDQNISLTELNSAKALIIANKEKLKEILSKV
                     YNDKYVSDYKKVLNELENNTSNVKNIIEEIDNKNNNSVVSAQLNKFLKLNFSQEIDIL
                     YAIKSNFSISEKLSPEQMALFDQKDSQDKLKSVLTLLKFKSSFEGILEVINQDEIIQN
                     IIKSTSVLYSIILLLCIFSLQKTARKNSIVPS"
BASE COUNT         3012 a         1408 c         1513 g         3397 t
ORIGIN      
        1 ttaatttttg atcaaagaaa ttttgtttta tatctttatt ttctttgttg ttgtttttag
       61 gctctttatt tagattaaaa tctttttgtg ttaaattgga aactaaattc tgagtatctt
      121 tgacaatttc tttatttaaa tttttatcaa gatttaaatt ttgatcattg ttctttaaat
      181 ttttattttg atcttgtata ttttcttgat ttaaattgtt tttttcttga tttttattta
      241 actctttatt aaaatctttg tttaagtctt tgctttcttt atttaaatta tcttggtttt
      301 ttttatcttt tatatttaac tcttctgtta aattttttgc aaactcatca tttttgatat
      361 tttttaaagt atttttagca tctgtggtat cttcttctat ttttgattta actttatcgt
      421 ttttttcgtg tttgctttct ttggatgaaa gtatggaatc taaatttttt aaagtttgag
      481 aaagcaaaga accgctatct ttagaatttg ttttttgcat agaatgagtg cttgtagtat
      541 gagttgtatt ttctaaattg tgatttaaat ttttactcac attggaaatt ttattattga
      601 tgatttcttt aaaaacatta tccacagcac ccttaaaaaa atcagcctta tctaaatttg
      661 gaaaagttgc tttaagatca agaagacgat ctactttaat attttttaca tttaagccca
      721 gatctttagc tatgtctaaa agctcactaa gatttgatgc accttttaaa gcattaaaat
      781 tagcctctgt tttaataaga cttgaaagtt gagtagaaag atttgctagt ttaacatctg
      841 ctgtatctgt ttttagctta tctaacaaag aaagaatttg cataaaagaa gcagattcga
      901 aaatgcttat cttatcgctc tcatcaaaag ctcctttttg aagtctgctc atcgcttcat
      961 taacaacttc tttttgactg atcttcatat gatcaggtaa aaattcattg gtttcattga
     1021 tagaattaag caaagaattt aaaaaacttt ccgtatcatc ttgagttgaa tttttactat
     1081 cactactttc atgttcttta tttttactag ttttactaaa agaactgcta gtagtagaag
     1141 ttttactcgg cgtaagattt aaaacatcat tttgcggagc taaatttgac atcacttttc
     1201 cttcaaaaaa ttattttaaa aatttatcta ccattacatt aggaaatttt tctttcaaat
     1261 aagaatcttc atatacttta atcatcttat cttcatttaa agcagttaag atatttaaaa
     1321 gctcttctaa atttttagca tttaaaattt tctctaaatt ttcttcattt tctaaaattt
     1381 ctgtaagctc acttgaaatt cttgccattt tttcgttttc atctgatcta aaagtttcta
     1441 aaagctctaa aacttgaagc aaaacttcat tttttctttc agctagatca cttttaaatt
     1501 caacaaaaat ctcttcattt aatggttttg acattttaac ttccttttta aaattttaat
     1561 ttcataagtt tttaaagcaa gaagtgttcc aagttttgat actttgtagt ttaagttaaa
     1621 tttttgtata atttaagctt ttaaaaattt agctttggag aagaaaattt ggaaaacatt
     1681 agaaatatag cagttatagc tcacgttgac catggtaaaa ccactatggt agatgaattg
     1741 ttaaaacaat caggcacctt tagcgaaaga gaacaaattt cagaacgcgt tatggatagc
     1801 aacgatatag aaaaagaacg cggtattacc atactttcaa aaaacacagc gatcaattac
     1861 aaaggtacaa aaatcaacat catagatact ccagggcatg ctgattttgg cggagaagta
     1921 gaacgtgttt taaaaatgat tgatggagtt ttgcttttag tagatgctca agaaggcgtt
     1981 atgccacaaa ctaaattcgt ggttaaaaaa gctttatctt tagggcttaa acctatagtt
     2041 gtaatcaaca aaatagacaa accagctgct gatcctgaaa gagtgatcaa tgaaattttt
     2101 gatctttttg tagccctaga tgcaaacgat gagcaacttg actttgctat agtttatgct
     2161 gcagcaaaaa atggttatgc taagcttgat ctaaacgatg aaagtgataa tatggagcca
     2221 ctttttaaaa ccatacttga acgcgttcca gctccaagtg gtagtgatga aaatcctttg
     2281 cagcttcaag ttttcacttt ggggtatgat aatttcgtag gtaaaatagg cattgctaga
     2341 attttcaatg gggttgtgaa gaaaaaccaa agcgtaatgc ttgcaaaagc tgatggtacc
     2401 aaggtaaatg gtagaatttc aaaactcatt ggctttatgg gcttagaaaa aatggacatc
     2461 gaagaagcag gaagtggaga tatcgtagct atagcaggtt ttgaagcttt agatgtgggt
     2521 gatagcgttg tagatccaaa caatcctatg ccacttgatc ctttacacat tgaagagccg
     2581 actttaagca tagtattttc tgtaaatgat ggaccattag caggaactga aggaaaacat
     2641 gtaacttcaa ataaaatcgc tgaacgctta gaagctgaaa tgaaaactaa tattgctatg
     2701 aaatacgaaa gcacaggcga aggtaaattt aaagtaagcg gtaggggcga acttcaaatc
     2761 actattttag ctgaaaatat gcgtcgtgaa ggttttgagt tttgcatggg aagacctgaa
     2821 gttatcgtaa aagttgaaga tggggttaaa acagaacctt ttgaacattt agttatcgat
     2881 gtgcctgaag aatttagcgg tgcagtaata gaaaaacttg gcaaaagaaa agctgaaatg
     2941 aaaaccatgg caccaacggg cgatggacaa acaagacttg agtttgaaat tccagcacgc
     3001 ggacttatag gttttagaag tcagttttta accgatacca aaggcgaagg cgtgatgaat
     3061 catagctttt tagaattccg tccttttagc ggtgcggttg aaaagcgtaa taatggagcg
     3121 ttaatttcta tggaaaatgg cgtggcttta gggtattctt tgtttaacct tcaagagcgt
     3181 ggagtacttt tcatagagcc tcaaactaaa gtttataccg gtatgattat aggtgagcac
     3241 tctcgtccaa atgatttaga tgttaatcct atcaaaggaa agaatcttac caatgtaaga
     3301 gcaagtggaa gcgatgatgc aatcaaactt gtgccaccta gaaaattaag tcttgaaaga
     3361 gctttagagt ggatagaaga agatgaactt gtagaagtta cgcctgtaaa tgtgcgtgtt
     3421 cgcaaacgct atcttgatcc aactcaaaga aaaagaatgg aaaaagcaaa atcttaatgg
     3481 atttaaaaag cttagaaaat aatagacttt atatacttaa acgcttagga atcttaaaat
     3541 tcctaagcat tatcgaagcc ttacttgtag gttttttagc ctttgttttt ataagagatg
     3601 ccttaatcgc agtaatttta gctgtttttg tgggtgtttt tttctttcgt tttacagcca
     3661 aaaaactaaa actcacacaa aaagaattac aaattgatgc tttaaatttg tttttgcgtc
     3721 gttttggggc gaaatttaaa aagcaaagtt taagtcaaaa agacttttta aaactaggac
     3781 ttacaaagga tttgaaagaa tttaaaagtc aaaactgctt tgaatttaag gattttaaaa
     3841 tttatgatat tcagttttta gacgaaaaca aacgcttttt ttgcggaatt ttgctcgaaa
     3901 tttcaaaagc aaacaaaaat cctagctttg aaaacgaaga acaaatttat atcaaactta
     3961 cagataaaaa tttcacttta aatcatatct tttctaaaga aaatcattat cttatcgcta
     4021 ctttaagcaa tccttttttt atagatataa aaaaagattt tgaaaacaat ttcaaaaatt
     4081 tagaagaaaa tctaaactct ataaaaaaca aactatttaa ataattaaca taaagttaat
     4141 atcataaaat tttaataaat gttaattata tactttaaaa atatattact tttagtaaca
     4201 ctttaaaatt taattttatt taaattattc ttattatgct taatatttaa gaaaaaatac
     4261 actaaaatca atttgaactg caaataaaaa ggaggaaaat catgaaaaaa aacattttat
     4321 tgcttggctt atgtcttagt ttgagtctta gtgctaaaag cgtgagtgat tacaaagtag
     4381 gagaagaatt aagcgacaag gaaggagtag agtattttaa ggaactttcc aaaagacctg
     4441 tgcaagaatg gccaaataaa aatttaagca tcaatgatgt tccaaaaggt aagcaagggg
     4501 atttaatccg ttatggcata gagcttttaa gcaagacaga aagtactcta ggaccctata
     4561 gcaagctaaa aaagacaagc aacgaagtaa actgtatttc ctgtcacatg gacaatgacg
     4621 gcaacggttt accagggaca aaaaaatatg ttattccatt tttaaatgtc ctaaacaatt
     4681 atccaagact tgatatagaa acgatgaaaa tcatctctgt tgaagataga attcgcggaa
     4741 tgggcggaac tgactctcat agatttccta atgattctaa agaaatgaaa gcaattttag
     4801 cttattttaa atggctaaaa gaagcttatg gtattaaaga cggcgtaaag cttgaaggag
     4861 atttttttgc taagatgaat tttccaaatc gcccagctga ccctgtgcgt gggaaaaagc
     4921 tctttgaaga aaattgcgtt gcttgtcatg gcgaaagagg acttggggta aaaaatgata
     4981 attacgaaca aggtagcgga catttatatc catctttact tatctatcct gatggtggac
     5041 acatggctat gataccattt ttagcaagat ttttaaaatc agccatgcct tttggtgcga
     5101 gtgcagataa tcctatatta agcgatgaag atgcactgga tatcgcagct tatgtcaata
     5161 caggttttgt aagaatgcct ataaccacta cagaaaatcg tgcaggactt gatacagctt
     5221 atagcaaatc cccatcatta aaacctgagt attttgcctc accgcaacaa aatttagacc
     5281 ctaaagaata cataaaagta aaatacggac cttggaaaaa tccaaatcac ttcccaggag
     5341 aatgattaat tttgggctta gcccaaaatt aatcctcatc tttggctaaa ttttcaagac
     5401 ttttaatccc ttcttcgcct atcaaatttc caccttgtaa atcactaaat atcgcattta
     5461 aagaactcac tatggcagtg gaattaaaac ttagattttc tatagctctt tctctttttt
     5521 tccatatatt ttgcaaagcc cttttttcag cttctaactc ttctttcata ttttggtaag
     5581 ttttgagtat aaaagtgatt tgcgtgttaa attccttgga atttaagtat tcgtataaaa
     5641 tgtgattttt ttcatctttg ttttgcaggg catttttgag tttataagcg tttataatgc
     5701 tttctctaag cactgctaaa acacctttga attcattaaa agtacaaatc aaaattcctt
     5761 ctttaaaatg cgttttttct ttatcttttg gcatagtttt tgtgatcaaa actgctatat
     5821 cactttttgc ggctatgctg tctagtttaa gtttatcaag ccattcttta ttaaattctt
     5881 tagtgcgttt gctctcatac aaaatacttc cacaaatatt tccaaaatta tcctttacta
     5941 tatgcagaca atcagctcca tttacgcctt ttggcacttc ttttacttca tcgcttaaat
     6001 actcactttg tatgtattct tctatgagta gttcggctgc ttcgccttgg agttgctgtg
     6061 agccttgctc tatcctgcgt tgtgcgtctt ctaacttttg ggctacactt ttaaaattcg
     6121 tttctagttc tttgtattta agatcttgct cttgagtgct tttttgaaat tcaagacgca
     6181 ttttttctct ttcaaattcc aaatttttgc tttcttgttc tttaaattct ttaaaagcct
     6241 cttctttggc ttgaaatttc aatctttctt cattttcttt ttgctctctt tttagccttt
     6301 cattttcagc ctttatgctt aaaaactcgc taagttcttt gctttttttc tcgagttctt
     6361 cttgcatgat tttcatttca ttttcatgct ctttgttaaa tttctcgctg aattcttttt
     6421 ggaaattttg cttttgtgtg agaagttctt gttcaaattt ttgcttttct aaaagaagct
     6481 tttggcttac ttgctcgttt atgagttttt cttgttctat cttttgagtt tttaaatcat
     6541 ttaaagcttt gatatattca gctcttttag catttacctc atcatcaaat tctttttttt
     6601 gttttagcat ttcttgctta gctttatcta aaatttgagc atataaagca gtgctgatat
     6661 cgataaaact tccacaactt gggcatttga tttgttcatt ttggtttaaa ttttgcataa
     6721 aatttcctta gaatttttcc ctaaatttaa catagaaaaa caaagattat tctaagattg
     6781 actcgttaaa atcattcttt taaaataatt aggattacaa atgcaaaaac acaccaaaat
     6841 tcacggcttt gctaaattta aactcatcgt tatccttgct ttgatgtcaa gcatagcacc
     6901 actttctaca gatatgtatt tgcctgcact ttctcatgtg gagcaaagtt ttcaaactaa
     6961 ttctttttta acccaactta gtatcgcaag tttttttatc gcttttgctt taggacagct
     7021 tatatatggg cctttaagtg atatttttgg gcgtaaaatt ccagctttgg tggggatatt
     7081 tttcttcatc gtttcgagtt tgttttgtgt gattatcgat gatatttatg cttttatcgc
     7141 tttgagattt tttgaagcac ttgggggttg tgcaggtgtg gttatcgcaa gggctattgt
     7201 caatgacttg tttgagatca aagaagctgc agggattttt gctttgatga tggtttttag
     7261 ttctcttgct cctatgcttt cgccaacttt tgggggaatt ttgctagagt atttttcatg
     7321 gcatagtatt tttgcgactt tgtttgcttt aggaatttta ctttttttga tgatactttt
     7381 tggtttaaaa gagtccgcac ctcatcttaa aaacaaaaaa ttttcccatc atgaagcgat
     7441 gaaaagctac aaatttgttt taagcgataa acgcttttta gtttatatac tatgtgcttc
     7501 ttttgctttg gcggcgatgt ttgcttatat cacaggatca agctttgttt ttacgcagtt
     7561 ttttagctta agtgagcaaa aatttgcttt gctttttggg gcaaatgctt taggttttgt
     7621 catctgtgca aatatcaatg caagattggt tttaaaatac gaaagcgaaa aaattttggc
     7681 aaaagctttg atgataatgt ttatatcgac tgtgatttta cttgcaaatg ccttttttca
     7741 tccaaatttc ttgctttttg aacttagtat ttttacaagt atcgctatgc ttggtttcat
     7801 cgcacccaat accacgactt tggctatggc aaggtttaaa gaacatagcg gaactgcttc
     7861 tgcggtgctt ggaacggtgc aatttggttt tgcagggctt atttcttttg tggttggggc
     7921 tattaacgca aatacgccga taatccttgc ttttgtaatg tgtgcttgcg tattggttgc
     7981 aaatatgata tattttctaa tcaaaataaa ggagaaaaaa tgaaaacaaa taatatcttt
     8041 atggctttag ccatagtttt agcaagtttg attctagctt ttggatttaa caaggcttta
     8101 agcgatttta aaacacttga aagaagtgta agcgtaaagg gtttaagtca aaaagaagtc
     8161 gaagcggata ctttgatact tcctataaaa ttcacaagat caaacaacaa tcttacaaat
     8221 ttatacgaag aactagaaca agataaagaa aatatcatca aatttttaaa agaacaaggc
     8281 gtaaaagagg atgagatcaa ctacaactcg ccaaatatca tagatcgttt aagtgatcct
     8341 tatagcaacg acactcaagc tgcataccga tacataggca ctgcgaattt actcatctat
     8401 actcaaaatg taaagcttgg aaaaagcata ctagaaaaca tttcaagtct tgcaaaattt
     8461 ggcatagtaa caaaaatcga tgattatgat atagaatacc tttacacgaa gctaaatgag
     8521 ataaaaccac aaatgataga agaagcaacg ctcaatgcta gaaatgcagc gataaaattc
     8581 gcacaagatt caaacagcca tctaggcaag ataaaaaagg cttctcaagg acaatttagc
     8641 atcagcaaca gagataaaaa caccccttat atcaaaacca taagagtggt ttctactata
     8701 gaatactact taaaagactg atgatgaaat ttcaagctaa gctttaaggc ttagcttggg
     8761 actatggaat tttttcgtgc ggttttttgg agtgagaata tacaaagcaa aagtataatg
     8821 ctatataaaa cactagtgga ttttatgatg ttttggataa tttcatcttg atttatcact
     8881 tccaaaattc cttcgaaact tgatttaaat ttcaaaagag tcaagacact ttttaattta
     8941 tcttgactgt ctttttgatc aaaaagagcc atttgctcag gtgatagttt ttcagatata
     9001 gaaaaattac tttttatcgc atataaaata tctatttctt gactaaaatt taattttaaa
     9061 aatttattaa gttgagcaga tacaacgcta ttgttgtttt tattgtctat ttcttctatg
     9121 atgtttttta catttgatgt gttattttct agctcattta aaaccttttt ataatcactt
     9181 acatatttat cattatacac tttagataaa atttctttta atttttcttt atttgctatt
     9241 atcaaagctt tagccgaatt taactctgtc aaagaaatgt tttgatcttt tgaaggaagg
     9301 ttaaaattat cttgcgaaat atcggttaaa
//
LOCUS       DARGED010000062         9322 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.062, whole genome shotgun sequence.
ACCESSION   DARGED010000062 DARGED010000000
VERSION     DARGED010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9322
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.062"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..457)
                     /locus_tag="SFZ84_001121"
     CDS             complement(<1..457)
                     /locus_tag="SFZ84_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEG8203240.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCKNIEQKSVEILEELKNLDYPILKVFHTSIKNNQ"
     gene            complement(454..1776)
                     /locus_tag="SFZ84_001122"
     CDS             complement(454..1776)
                     /locus_tag="SFZ84_001122"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG8203241.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYKQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            1854..3527
                     /locus_tag="SFZ84_001123"
     CDS             1854..3527
                     /locus_tag="SFZ84_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8203242.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILVQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILDQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILVDSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAKDLSVVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKTVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            complement(3524..4825)
                     /locus_tag="SFZ84_001124"
     CDS             complement(3524..4825)
                     /locus_tag="SFZ84_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203243.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQVPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYIMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSVKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFTFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     IFSTFSENLGVVDIYKNSKNLVVKFDSKLTNKEELEGKIKI"
     gene            4991..5593
                     /gene="rdgB"
                     /locus_tag="SFZ84_001125"
     CDS             4991..5593
                     /gene="rdgB"
                     /locus_tag="SFZ84_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG8203244.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            complement(5624..8095)
                     /locus_tag="SFZ84_001126"
     CDS             complement(5624..8095)
                     /locus_tag="SFZ84_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG8203245.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDTDLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLIFSNIEPIIKLGIMMSMGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNKFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKAKFPNQHKEHILKQ"
     gene            complement(8095..8664)
                     /locus_tag="SFZ84_001127"
     CDS             complement(8095..8664)
                     /locus_tag="SFZ84_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG8203246.1"
                     /translation="MKKIFLILVLFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(8674..>9322)
                     /locus_tag="SFZ84_001128"
     CDS             complement(8674..>9322)
                     /locus_tag="SFZ84_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG8203247.1"
                     /translation="FAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVALYDYGLRP
                     VLKGYNTITPEFIRLGVRNFFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFG
                     GLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPSNLRDTLALPATWYASFT
                     AYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK"
BASE COUNT         3296 a         1388 c         1407 g         3231 t
ORIGIN      
        1 cttgattatt ttttatactg gtatgaaata cttttaaaat gggataatct aaatttttta
       61 actcttctaa aatttctaca cttttttgct ctatgttttt acaaagatcg catttgctaa
      121 gtactaaaat gatattttta atatcaagaa tttttaaaat ttctaaatgt tctaaacttt
      181 gttcttttaa accctcgtta atatctacga caaataaaca aacactaaag ccaaaagctc
      241 cacttaccat agttttaacc aaatctttat gtcctggaac atcgataaaa gaaatgtttt
      301 tatcttttaa tttaagattt gaaaaactta aattaatggt gatttgtctt tcttgttctt
      361 cttttaaact atcgccttca aaaccattta aagctttaat gagtgaagtt tttccatgat
      421 caatatgtcc tgcggttcct ataataacag atttcataag ttttccattt gattaattgt
      481 aagaataagt ttttgaagtt cattttctcg tatagttcta aaatcaagaa caaattcatc
      541 attttcaatg cgtcctatga tattttcttt tctaaatcga gtttgtagtt ttaaagcatc
      601 tccttgaaaa gttagtatat aagtatctaa acttttatca ggcatagaac ctcctcctac
      661 taaacttttg ctttttttga gttgggtttg aaattttaat tctttttgca ctcttaaagc
      721 tttttcttct ataaaggata agtcatcatt taaaagtttt aaggtaataa ttttttcata
      781 atctttttgt aaataagctt ttaagctttc atttaaaaaa gatagggtta atttatccac
      841 tcttagcatt cttaaaagtt gattttgttt aagtttttct atgagttctt tttttccaag
      901 tataatgcct gcttgcacac taccaaaaag tttatctcca ctaaaactta aaatatcaca
      961 ttcttgtacg agttttttga ttttaggttc atttttaatc agcttttcat ttaaattttc
     1021 acaccagcca gaacctagat cataataact caaaagccct ttttcttttg ctagttcatg
     1081 tagatctttt atatttactt cactatgaaa acccataaga gcgaaattag acttgtgggt
     1141 ttttaaaatt agagcggtat tttcactgat agcttgttta tagtctttta agtgtgtttt
     1201 gttactagtt ccaacttcgc aaagctttac acctgcagct tttatcactt caggcacacg
     1261 aaaacttccg ccaatttcta caagttctcc tcttgagctt atgacttctt tatcataaca
     1321 aagagaatta agcactaaaa aaactgctgc agcgttgtta ttgactacta aagcatcttc
     1381 gcattcaaaa agcattttaa gtttttctaa taccaaagca taacgagagc ctctttttcc
     1441 attttctaaa tcaaactcta cattagaata attacaaatg atatctttac acgcttcata
     1501 aagttcttca tggattacac ttctgccaag gtttgtgtgt ataaccactc cgcttgcatt
     1561 aatcacactt tgtaaatctt tgcggtaaaa agttttgatt tcttttttga tttctaaaag
     1621 tagtttatct ttagaaattt catcttggga aaaattttct tttagttttg cgacaacttt
     1681 tttacaaaaa aatgctttga tataaaaagg ataggatttt aaactctcat cttcaataag
     1741 agtgttaatc tgtggaaaag ttctaaattt gttcatctta agccttaaga aaatatttgg
     1801 ttattttaac atagaattta taaaatgatg ttttaaagag attaaggaag acaatgcaag
     1861 attttgttta tataaaaaat gatgttttaa tccctttgcc tgacgctatt gaaattttag
     1921 ttcaggcaaa tgataaagaa gcattaattt gcaatgataa aaatcaaaaa gcacaaattt
     1981 atgcccctga gattaatttt tatcttaaaa attctcaaga tgaaatttta gatcaaagta
     2041 aaaatgtttt aacgctttat aaagcaagag ctagcgttta tgatttagga cttgatttag
     2101 aacaaagcaa agaagtgcaa aatcgtttga ttttagtaga tagcgatact caaaccgtag
     2161 agtttttaaa agaacatgga tttaaggtta ttgctttaag cagtgcagaa attttagctg
     2221 tttttggaag tgtaggggag ctttgtgctg tggttaaaaa tcaaggcgaa gaagtggaaa
     2281 tagattttga ttttttgctt tttaaagcta aggatttaag cgttgtgcgt aaagatttta
     2341 caagacaaag tggatgttat aatcttttaa attttgaaaa tcttgaagta ttgttagagt
     2401 ttttgcaaag caaaagtcca aaatatcatt ataaaactta tattagctat aatgctagcg
     2461 tgtgtcaata ccacgaaaga cgcagtgagc attgtgcaaa atgtgctgaa atttgtccta
     2521 ctgtggcgat tttaaaagat gatgaaaaaa agcatttgga attttctcaa gtggattgtt
     2581 tgggttgtgg aggatgtatt agcgtgtgtc ctagcggatc gcttgattat gctcctatgc
     2641 caagagaaag tttttttacc ctttgtgagt tttataaaga taaaaaaatt ttaattattc
     2701 ccaaaaaaat gtctttagaa aatttaaatc ttgctttacc aaaagatgtt ttacccttta
     2761 tgatagaggg tgaaaaatgg ctttcttcta tgcatttttt aacgcttttg caaaatagtg
     2821 gagcaaattt ggttttttat acggattttg tatctcgtgg tagcaatgag gctattgtac
     2881 ttttaaatac tttttttgag agaaaatttc aaaaaaaagc tatttttgtt gctaaagatg
     2941 aaaaagaatt gcaaaatgtt ttaaaagagc aagaattcat acaagattta aaatatgatt
     3001 ttcataataa caccttaact acaagagaaa attttgccaa aagaatgcaa gaaatgataa
     3061 aaaatgaaga ttttggtagt atagaaagtg gcgaatggtt gcgttatggt aaggtagaaa
     3121 tcaatcctaa tacctgtacg ctttgtcttt cttgtgtggg tgcctgtaat gtaggagctt
     3181 taatcgctga taaacaagaa aatgctttga aattcaatgc ttctctttgt acgacttgtg
     3241 ggtattgtga gttaagttgt gctgaaaaag atactttaaa attatttcgt agtggaatgg
     3301 agtttagagc ttcttatttt gaatatcaaa ccatggcaaa agatgagctt ttttcctgta
     3361 tagaatgcgg taaagaattt gcgaccaaaa aaactgtaga aaaaatagcc aatttaatga
     3421 agcctaaatt tggtaatgat gaaaataaaa tcaaaacact ttattgctgt gcagattgca
     3481 aggcaaaagt gatgataaaa gcaatgggtt ttgcggggca aaattagatc ttaattttgc
     3541 cttctaattc ttctttattt gtaagtttgc tatcaaattt aacaacaaga tttttagagt
     3601 ttttataaat atctacaacc cctaaatttt cactaaaagt actgaaaatt aaaggtgttt
     3661 ctaaaggtag ataaaggttt ttaaaatcag ctggattttt taagaaaaat aatgccacaa
     3721 gccaaattag agctaaaatt actaaaataa tagctaaaag atttaaggca tctagatgta
     3781 aaaatatccc tccgataata ccacctataa aacttccacc atatccaaaa gcattaaaca
     3841 accctaatgc cgcacctttt tcatgaactt tacaaaattt tgatgcacaa ctttgcataa
     3901 taggctcatg taaattaaaa cctataaaaa aaatcacaac tgctatgata aaaaaatcta
     3961 tagaattact aaaagtaaaa aaaagataag aaagtataaa aaaaacaatt cctaagagta
     4021 aaatttgttt agctaaacct cttttttcgc ctaaacttcc agcaaagccc atagcgataa
     4081 aacctgctac catagaagca ctataaacaa tccaaagttt atcagaagca aagcctaaat
     4141 gttttactag aatgatagga atacttaaaa atgctatact cataagcatt ttttgcatga
     4201 aattagtaag attcataagg gctaaatttt tttgtttaat aagatgaaaa aaaggagttt
     4261 tttcattttc atgagtgatt ttattttctt taggtacaac agtataaagt aaaattatac
     4321 ataaaagaga caaagctgca ctaagatcaa aaaggctaga taaaccccat tttacactca
     4381 ttaaaggaga gattaccata gaagctgcaa aactaagtcc tataaaagaa cccattactg
     4441 ccatggcttt accacgattt tcttctgtga taaaatcact tatcattgct gtagccacag
     4501 ctccaatagc tcctgcacct tggagcattc ttcctaaaag catgatgtag atattttccg
     4561 caaaagagca gattaaagag cctattataa aaataatcag tccaatgagc atggtttttt
     4621 tacgaccaat tttatcactt aaaatcccaa aaggcacttg taaaatcatt tgagttaagg
     4681 cataaacacc aactaaaagt cccactaaaa attcattagc gccttcaagt tttaaagcat
     4741 aaagacttaa aactggcaaa actataaaaa gcccaaaaaa tcttgttcca actatgaaag
     4801 ataagggtaa gacattgttt agcattatca atttcctatt aaatttgaaa tttaaattag
     4861 gataatttta ctatgaaatg gattaagcat tgattaacat cgttttatca tttgatattt
     4921 aaaagctacg cacaaggata aattttataa aatcatattt ttgttttgat attattttgg
     4981 agcttttgtt atgaagatta tcctagctac gagcaataag cataaggttt tagaacttaa
     5041 agaaatttta aaagattttg aaatttatgc ctttgatgaa gttttaatgc cttttgagat
     5101 tgaagaaaat ggaaaaactt ttaaagaaaa cgccttgatt aaagcaagag cagtttttaa
     5161 tgctttggat gaaaagcaaa aaaaagattt tattgcttta agtgatgata gtggcatttg
     5221 tgtagatgtt ttagaaggaa atccaggaat ttattctgct cgatttagcg gtaagggcga
     5281 tgataaaagt aaccgtgata aacttgtcaa tgaaatgata aaaaaaggtt ttaaacaaag
     5341 taaggcgcat tatgttgctg ctattgctat ggtaggtttg atgggggaat ttagtacgca
     5401 tggaaccatg catggaaaag taatagatac agaaaaaggt gaaaatggtt ttggttatga
     5461 tagccttttt attccaaagg gttttgataa aaccttagcc cagcttagcg tggatgagaa
     5521 gaataatatc tctcatcgtt ttaaagcttt agagcttgca aaaatcattt taaagatttt
     5581 aaataaagga taaaaatgaa aaatttttta aaatatatag ctattattgt ttcaatatat
     5641 gctctttatg ttggtttgga aacttggctt tcttagaata aatagtgatt aaaaagcttg
     5701 gtaataagaa caaacttcca cttaaaagca aaatcattac aaaaacggtt aaaattccaa
     5761 aataaatcgt tggaatgaaa ttactactca tcataacact aaaacctaaa actatgctaa
     5821 tggtagtata ataaagtgcc gaacctatac taaggtgaga aatcataatg gcttcttcta
     5881 ggcttttgtt tttaatttct tctctaaaac gataaatata atgtatagca tcatcaacgc
     5941 ctatacctat agcaatagca gctatagtaa tactcatcat atccaaagga atacctaaaa
     6001 gccccataag agcaaaaacc acacttaaag gaataacatt taccaatata gccgcaactg
     6061 aaaattttaa atccctaaaa acaatgataa aaagtatgaa aatagctaaa attacaaata
     6121 taagagtatc aaattgcgat gaaaaaagac tttggagcat attattataa agcaccatta
     6181 tgcctgtgat ttgcacttct actccatcgt tttttacaag ctcgttgagc tgttttttaa
     6241 gatctattaa aaacttatta cgtcttaaat tcggatcaga atcaacaata cgcatactaa
     6301 atcttaactc gttattctct atacttacaa aaggtgaaag caagtcttgt ttaaatttag
     6361 caggtaaatt ctcatttaaa aacgcaaggg caaaatcatc taactctttt ccatcgttga
     6421 tatttttccc tagggttaaa agactattaa gacttaaaac cgagcctaca aattctttgt
     6481 tttctaaaaa ttcatgaact ttttttgcaa tacgtgtttt tttagagtca aaccaataag
     6541 tttcttgtgt ggctaaattt tcaaattcac tttcaaaact atcaagagta tcgcttgtat
     6601 tttgatcgtt tttattattt ggaaaacgaa tgatcacttc taaaggcaag gttccaccta
     6661 gatttttatc aataaccaaa agtccttttt tgatttcact accatctttg aaataattga
     6721 caaaagaatt ttcaaccctg agttttgaaa tacctattaa agctaagatt atagcaagaa
     6781 ctgaaattcc ataaatcatg cgacgttttt taggatcaag agcggtttta gcgcaaaagg
     6841 ctaaaagatt aaatttaaac tcttttttat gataattttt tggttttaaa agaaccaaga
     6901 tacttgctaa aaataaataa ctaaagataa gagctaaacc tatacccata ctcatcataa
     6961 taccaagttt tatgataggt tcgatatttg aaaagattaa agaaaaaaat cctatcatcg
     7021 ttgtaacaat ggcataaagg ctaggatttg ctttggctag taaggtttca agcactatgc
     7081 gctcaacttt agctttggga tgattttgag tgctttcgat aaaatgcgtg attaaatgaa
     7141 caactacact taaggtgata attaaaacca aagcaacgta atttgatgaa ataaccgtga
     7201 tttgaaaatt taaaagtgca aaaactccac tagctgcact taagcttata aaacaaataa
     7261 aaagaggtaa aaaaacaaag cgccatgaac ggaaaaaata ataaagtgca agtcctagta
     7321 aaaatacaag agaaacacca tagagcacaa gatcagattt tatataagct atcatatcat
     7381 cagcgatcat gcttacgcca ccaaggtaga gcgtatcttt atttttttca taatttcgaa
     7441 ctatgctttt aatagtatct agactttgtt tcgtaataac tttttgcttg tcttgatgtt
     7501 tttttatagc aagacgaatt tgatcttttt ctttttcatc ggtagcaaga tcgcgttttt
     7561 ctacaagatc attataaact gtatcaggct ttaagtaaat aataagccct gttacttttc
     7621 catcttttga gatgatatta tttttataaa agggactatt taaaatttcg tttcgggctt
     7681 ttgtgcggtt tatatcttgg ctttctatgt ttgggatatt ttttaacagt tcttttaaat
     7741 ccgtattttg tgaactttga agcaaagggg cattgatgat gctaaaaacg cgctctacta
     7801 aaggggcctt ttctaattct tcatgaagtt tttttaattt ggctaaattt tcatttgaaa
     7861 aaggtttttc atcatagggt ttgaaggcta aaagtaaaaa attatcactt ttataatgtt
     7921 ttgaaatttc tctaaaagtt tttaaatctg tatcatcttc taaaagtaaa ctttcagcac
     7981 ttgcatctac gctaagctta aaagcaaaaa agcttaaaaa caggcatata aacaaggttc
     8041 caaaaaaagt actttttgga cgagaaataa aaaactttaa aagctttgca aacattattc
     8101 tatgacaata ctctcaagtt tttgaagtag ggcatcaaag ccttggttgg ctaaaatatc
     8161 tccaaattgt gatctataag tttgtactat actcacacct aaaacatcta catcataaat
     8221 aagccagtta ttattatcat tgtaaaattt aaaaatgata tttttttctt ccccatctac
     8281 taccatagaa gtagttaaaa aatagcgttt ttcatttttt aactcaccat ttttgacctt
     8341 taaaacctga tctttataaa gactgagttt atcggtaaaa ctttttttaa gacttgcttc
     8401 aaaggctgtg gtaaattttt cttgttcttt tggatttaat ttagaataat ttttcgaaag
     8461 actgagtttt gccatgagtt tataatctat tatgctatca aaaagtttaa aaattccatc
     8521 agcagcttgt tttttgtctt ctttgctatc ttgtaaaagt tttaagcttg catcaatgtt
     8581 tttttgcata gtactagaaa tttcatctag ctgcaaggca aaagcattaa aaaataaaac
     8641 caagattaaa aatatttttt tcattatttt cctttatttg ctaagttcat tgcgtctttg
     8701 ctcgtaagca tcacgcaaga atggatataa attaggcgtg ttgtgataaa tttcatcaat
     8761 ttcatcaagt ctaaaactaa gttcattacc aaatccataa gcacttatag ctatacttgc
     8821 ccaagtagga tcaatgtaag cagtaaaact tgcataccaa gttgcaggta aagcaagagt
     8881 atctctaaga ttactagggc cgagtatagg taagacaata tgaaaaccgc ttcctacacc
     8941 ccagtgagcc aaaacggttc ctaagtccgc gggatgtttt ttaagaccca tttttgatgc
     9001 cacatccata agtccaccaa agcccataat ggtattggcg gtaaatcttt taaattcttc
     9061 tcccgcttct tcaaatttaa actgcaaaat attgcctaca aaacgcaaag gagcaagtaa
     9121 attatcaaag aaatttctta cccctaatct tataaattca ggagtgatag tgttatagcc
     9181 cttaagaacg ggacgcaaac cataatcata caaagccaca ttaaaacttg tcatagcttt
     9241 gttgtatcct gaaagtggat cgtttacttg atagttttgg tattcttgtt cgaaatcatc
     9301 taaattttgt tctttagcaa aa
//
LOCUS       DARGED010000063         9176 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.063, whole genome shotgun sequence.
ACCESSION   DARGED010000063 DARGED010000000
VERSION     DARGED010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9176
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.063"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(61..1479)
                     /gene="htrA"
                     /locus_tag="SFZ84_001129"
     CDS             complement(61..1479)
                     /gene="htrA"
                     /locus_tag="SFZ84_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG8203248.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTTTANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKNGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            1680..2573
                     /locus_tag="SFZ84_001130"
     CDS             1680..2573
                     /locus_tag="SFZ84_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG8203249.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            2589..2963
                     /gene="hspR"
                     /locus_tag="SFZ84_001131"
     CDS             2589..2963
                     /gene="hspR"
                     /locus_tag="SFZ84_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG8203250.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            2970..4595
                     /locus_tag="SFZ84_001132"
     CDS             2970..4595
                     /locus_tag="SFZ84_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8203251.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            4605..4937
                     /locus_tag="SFZ84_001133"
     CDS             4605..4937
                     /locus_tag="SFZ84_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203252.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            4934..5554
                     /locus_tag="SFZ84_001134"
     CDS             4934..5554
                     /locus_tag="SFZ84_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8203253.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            5610..7604
                     /locus_tag="SFZ84_001135"
     CDS             5610..7604
                     /locus_tag="SFZ84_001135"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG8203254.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            7601..8422
                     /locus_tag="SFZ84_001136"
     CDS             7601..8422
                     /locus_tag="SFZ84_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8203255.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     IENKKIFPPKTLQERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRATTGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            8419..>9176
                     /locus_tag="SFZ84_001137"
     CDS             8419..>9176
                     /locus_tag="SFZ84_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG8203256.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLSALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKL"
BASE COUNT         3382 a         1367 c         1405 g         3022 t
ORIGIN      
        1 taaacttaat tttaatttta aactaaaatt tataacgaaa ggaaaatcct tccgttattt
       61 ttatttaagc acaagcaaag tcgcaaaacc attgcgatat acccaaactt tggtaaattc
      121 ttttttatta acttgtttta aagcttgttc taaatctttt aaatttttaa tttcactttg
      181 tccaacacct atgataatat caccctcttg gaaaccagaa ttttttcctt tgctcttttc
      241 tttaacacta tcaaccaaaa caccattaac atcttttgga atttgcaaac gatccttaag
      301 tcttggatct aaatttctca aactcaaacc atcaatcaaa tcgctttgta cgcctttagg
      361 attttctttt tcacctttaa gaataaaact tgcttgctta ttttctccat ctctttcgta
      421 acttaatgaa attttttgac caatctctaa agttcctata taatttttaa gatcaatagg
      481 actttttata accttatcat taactttagt aactaaatct ccacgcttaa gccctgcttc
      541 atcagcactt gaaccttttt gaacatcagt gattaaagct ccttcttgat ttttgtaagc
      601 ttttttagta tcaccttgca aagctaaaat agtcacacct aaaaatcctc tatcaatctt
      661 gcctttttca ataagttttt tagctatatc tttaaccata tttgaaggta tggcaaaacc
      721 tatgccgtta tttccaccac cacgagaaag aatagctgaa ttaataccta ctaaatatcc
      781 gcgactatcc accaaagctc cacctgaatt tcctggattg atagaagcat ctgtttgtat
      841 aaaattttca tattgattta aacctatatt gtctttattt aaagcagata ttatcccact
      901 tgtaacacta aaaccaactc caaaaggatt tccaagtgca aaaacaacat ctccttccat
      961 taaatcatca gaatttgtaa aagtaatagc tgaaagatta ttagcctcta tttttataac
     1021 agccaaatct gtttttggat ctttacctat aagttttgct ttatattcta tgtcgcttcc
     1081 tggtaaattc actgtaatcg tatcagcatc atctacaacg tgattatttg ttactatata
     1141 accatttttt gaaataatca cccctgatcc caaagaactc accacttctt tatcattttt
     1201 tccttttctt tgaggaaaat caaaatcaaa aaattgttta aaataaggat cattaaaaaa
     1261 atcatccaaa gggcttggac gatttgctct tgtaatagtt tttgaggtgg aaatattaac
     1321 cactgatttt tttgcatctt taatagaatc atgataagaa agcactgcat ttccagcagc
     1381 aggattcaca cgattagccg ttgtggtcga ttcgttaaaa ttaatacttg cagcaaataa
     1441 agcacttgct aaacttaatg ataaaaaaat ctttttcatt ttatttcctt ttgttcttaa
     1501 agataaatta tctcgtaaaa tattttactg tcttcatagt ataaaaccga aaatttacaa
     1561 aattgtaaat aaaaccttga gtgataaaaa tttataaaac ttgattgact taggctaaag
     1621 tttatgttat aatttaatcc tctataataa tcaagtaaaa atttttaagg aaatataaca
     1681 tgaatagttt atacgaaact cttggagtta gcaaaaacgc tagtgcagat gaaataaaaa
     1741 aagcttaccg tcgcctagct agaaaatatc atcctgatat caacaaagaa aaaggtgctg
     1801 aagaaaaatt taaagaaatt aatgctgctt atgaaatttt aagtgacgaa aaaaaacgag
     1861 ctcagtatga ccaatacggc gattctatgt ttggtggaca aagttttcat gatttttcaa
     1921 gaaatactgg tggggtaaat ttggacgata ttttaaaaga tctctttgga ggaggctttg
     1981 gtggacgctc aagagggggt tttaacggct tttcttcaaa aggctttagc agtggttttg
     2041 gaggatttgg aggttttgaa gaagaaattt tagacagcaa tctagagctt cacattcctt
     2101 tcgaaaaagc tgttaaaggc ggggaacata gttttaattt tcaaggcgaa accattaaat
     2161 ttaaaattcc acacggtata aaagaaggtg agaaactaag aattcgctct aaaggaaaac
     2221 aaagcagaaa tggagctaga ggcgatttaa tcattattgt aaaaatagaa gaaagtccta
     2281 tttacacaag agaagatgat gatttatatc aaaaagttga tatttcttta aaaactgcac
     2341 tttttggtgg aaaaataaat ataaaaacac tcaaagaagg caaagaagaa gcgacaatta
     2401 acataacgcc taattcaaaa aataaccaaa aaattcgttt aaaaggttat ggtgtgcaaa
     2461 atagaaaaag tgatatttat ggggatatgt atttgatttt aaatgttgtt ttgccaaatt
     2521 tagataccct tgatgaaaaa tttatagaac tcttaaaaga aaaattacct taaagaaagg
     2581 aataaaatat ggaacagcat tatgatgaac ctgtatattt aatcagtgtt gtggctaaag
     2641 ttttaagcat acatccacaa accttaaggc aatacgaaag agaaggattg atagagccaa
     2701 gtagaaccga tggcaaaata agactttatt ctcaaagaga tattgaccgt attaaactta
     2761 tattgcgttt aacaagagac atgggaatca atcttgctgg agtagatgtt atcttaaaat
     2821 tgaaaaacca acttcacgaa tttgaaaatt taattgatga actacgctta gaattaagca
     2881 aacaacaaga taaagaagcg gctagtaaag ccgttgttaa gcataaaaat agctttgatt
     2941 tgatttttta tgagaaaaaa taaaaaataa tggataattt tttagaaatt tttttaatca
     3001 ccgttgctat agctatagtt ttaaatgtca tatttaaaaa atttgaaatt ccaactatca
     3061 ttggatatat agctgctgga gaaatcattt ctgaaattta tcatttaagt ggcaaaggcg
     3121 aaatcactca tatagccgaa tttggtatag tgtttttaat gtttaccata gggcttgaat
     3181 tttcttttaa gcatttaatg gcaatgaaac aagaagtttt tttaaacggc tctttacaga
     3241 tgcttacttg tggctttgtt tttatgctac ttgctatagg aattttagga cttggagata
     3301 aaagcgctac catagtaggc tttgcactag cgctttcttc aaccgcagtg gtgcttaaaa
     3361 ttttaaatga taatggcgat ataaatgagc aatatggcag aaaagcattg ggaattttgc
     3421 tttttcaaga tatagccgtt attcctttgc ttttgcttgt agatattttt tcatccaaca
     3481 atcaaaacat agaaaaactc ctttttacca gtttaatttc agcacttatt ttaatcactt
     3541 tattattttt cataggtaaa tatctagtgg atagaatttt tagactcatt atccacactt
     3601 cttctcagga aatttttatt agtactgttt tatttatggt tattggagca agttttttag
     3661 caaattattt tggattttct tattctttgg gtgcttttat agcaggtgct ttgatagcag
     3721 aaacaaaata taaacacaaa atagaagcgg acttgatccc atttagagat ttgcttttag
     3781 ggcttttttt cataactgta ggcatgcaaa ttcaacttga tgtagtggca caaaattggt
     3841 ttttaatcat agttttaacc cttcttgtaa tggctttaaa atttggcata gtttttggct
     3901 ttttatttct ttacaccaaa aaaagagtag cgcttaaaac agcttttgcc atagctcaaa
     3961 ttggcgaatt cgccctagca attttttctc ttttacaagc aaaaaatatg cttgatatca
     4021 aaacttcaca aattttaatt gttgtttcta ttttaaccat gattatcacg ccttttattt
     4081 taaacaatat aagaaaaatt accaatgttg tagaagatat agcacttaat accaacgctg
     4141 tgcaaaatat tgacagcaat atcaagctga aaaatcatct tgttgttttt ggctatggac
     4201 gcttaggaca agaagtcgta caaaaaatca aaaacacagg cgtaccttat cttgttttag
     4261 aaagtgattt aaatttagta gaacttggag ttagtcgagg tgaaaatgtc gtttttgcca
     4321 atgctgctca agaagaaacc ttaaaaattg ccaatataga agaatgtgcc gtagctatta
     4381 tcacagttac aaatgaagct aaacttgaaa ttttatgtca agtgctagct aattatccaa
     4441 aacctataga caccatcatt catgtaaatg gaactttaaa aaagatgctt ttttctagca
     4501 tagatgaaaa tatacgcatc attcgctctg aaaaagtaat cgctagaaat ttagttcaag
     4561 aagcgctaga atgccgcatt cacaaaaata cctaaggaag aattttgaca aaaaatgaag
     4621 aaaaagcctt acgcgtaaaa tacctaagaa atcttgaaaa atttttcaat ggcgctatat
     4681 ctgcacttaa aaaagaagat tttgataaaa ctaaatttga agaaagaatg ttaaaaaatg
     4741 ctaaattttt tgaaaaaaat cccgcggtaa atcttaactc aacctatgca aaaaatcttg
     4801 aattttttgt caatgcttgt ttagattttt ccaaagaaaa aaacgagctt ttaaatcttg
     4861 ccaatgcttt agataagcaa aaaaaacaag gtgagaaaaa agaaaaacat aaaaattatt
     4921 taaaggatta tgaatgatta atgtattttt tgatatggat ggaactttaa tcgatagtgc
     4981 aaatgccatt tcttgtgcag tcaatgaaat aagacaggat ttaaacctag ccccactttc
     5041 aagagaaatc attatgcaaa ccatcaatac tcccaatatt gactgggcaa aagaacttta
     5101 caatatagaa aatttccatc attctagttt taaagaaggc tatgaaaaat attttgtcaa
     5161 gcactatgaa caaagcgtgg tgctttttga aggagtaaaa gaacttttag aatttttaaa
     5221 aagcaaaaat tgttttttag ctattgctac taacgccccg caaagctcac tttcaaacat
     5281 acttaaaaaa cacgatatca ttccttattt tgataaaatt ttaggcgtaa gtttaggcat
     5341 agaacccaaa cctcatccta tgatgctaga gcttttaaaa agcgaggctc catataaaac
     5401 aagcgttttt ataggagata gtcaaaaaga taaagaatgt gctaaaaatg ctaatttgcc
     5461 ttattttcat gccaaatggt atcaaaaaaa tttaaaagaa aatgaattta gcaacgctag
     5521 tgaacttaaa ggctttttgc aaaagtattt ataagttttt taatgaaatt ttagttaaaa
     5581 ttagaaataa attttaaaaa gagtaaatta tgagtgaatt attaatagaa attggtacag
     5641 aagaattacc tgctattcct ttgctaaaag aattagctaa tatagaaaaa aaatggaaca
     5701 atgttttaga agaataccgc ttggtaagtg attttaaatt ttattatact ccgcgtcgtt
     5761 tagttttttt tcatgaaaat tttgcagaca aacaagaaga tagctttgct gaatttatag
     5821 gagcacctaa aaatgttgct tataaagatg gagttttaac tcctgcggga caaagcttcc
     5881 tgcaaaaagc aaggatcagt gaaaatgaac tctcttttaa agaaatcaaa ggcaaggaag
     5941 ttttgtacca tcaaaaagct attaaaggtt tgcaaagtca agaaatttta ggagaaatgg
     6001 tagaaaaatt tctaaaaagt cttagttttg gcaaaagtat gcgctggggt gcaaattctt
     6061 ttgaattcat ccgtgcgatc cgttctatag cttgcatttt aaatgatgaa cttgttaatt
     6121 ttcaaagcta tggagtaaaa agtactaaaa aaactttcat tcacagaagc gtaagttatg
     6181 atttgcaaga ttttaacaat gcaaaagaat attttgaact actagaaaaa aactatatca
     6241 tccttgatcc aatcaaaaga aaggaaaaaa tacttgagca atttaaactc atagaaagtc
     6301 aaaaaaatat acaaattgga gaagatgaag agcttttagc tgaagtagtt gctatcacag
     6361 aatatcctaa tgcactttta ggaagttttg aagaagaatt tttagaaatt cctagcgaag
     6421 taatcatcac ttcaatgaga gaaaatcaac gttattttgc agtttttaac gataaaggct
     6481 taagtaatca ttttatagta gtaagtaatg cagtatgtaa ggattattca aaaatcatac
     6541 atggaaatga aagagttttg cgtgcaagac ttagcgatgc aatgtttttt tatcaaaatg
     6601 atttacaaaa tggcttaaaa cccgaaaaac ttgccaaaat gacctatctt gaaggtttag
     6661 gcacaatgca agataaaagt ttaagagaga ttaaaattgc tgaaatttta tgtcaaatgc
     6721 tccataatga taaaatcgaa aatatcagca cagcactaaa atacgccaaa gcagacttag
     6781 ccacacaaat ggtttatgaa tttactgatt tgcaaggcat tatgggaagt tattatgcgc
     6841 aaaaaatggg cttagattat caaatttgct tagccatcaa agaacaatat cttcctaatt
     6901 ccgaacaagc tccacttcca agtacagaat tttcaagcat agtagccctt gcaaacaagc
     6961 ttgataccct tataggactt tttagcatag gaaaaattcc aagcggaaca aaggatcctt
     7021 atgccttaag aagagctgcc aatgggatca ttaaaattgc tttaaattta aataaagaat
     7081 ttgatatcca aattttatta gaaaaacttt caaatcatta taaaagcttt gatatgcaaa
     7141 ttttaaaaga ttttattttt gaaagacttt atacttttta tacagtcaat gcttcttttg
     7201 taaaagcggt tttaagctca caaaatacag atcttatcca tatcaatcaa agcgtaaatg
     7261 ctcttataaa acttagcaaa aaagataatt ttaatgaaaa ttttgcaacc tttaaaagac
     7321 tagccaatat cgccactaaa aatcctcata aagttgatga aagtcttttt gttcaagaag
     7381 cagaaagtaa actttacaaa gcttttcaag aaaaaactaa agccaactct ttacaagaaa
     7441 aacttgaaaa tctttttgca cttaagcctt ttattgatga gttttttaat caagtgatga
     7501 ttaatgctga agatgaaaaa cttaaaaata atcgccaagc tttggtttat gaaatttatg
     7561 cggagttttt aaaaatcgcc gatcttaaag agttaagcct atgaaagccc tatggattct
     7621 tttaagcctt actctttggc tttttggagc tcaaaattta gaactcatca aaggtcaagc
     7681 tttattttta gaactagata agaaagattt tttatcttta aaaaataatg ataaaaatat
     7741 tcccaccttt gcacatccta aaaatcaaga aaaaattcta gctatttttt ccttacctta
     7801 caaaaatccc ccgcaaaaca ccaaacttat cgcattttat aaagataaaa aagaagaaat
     7861 tttcataaaa actttagaag gtaattataa aagtgaaaaa ttgcaaattg aaaacaaaaa
     7921 gatttttccg ccaaaaaccc tacaagaacg catcgctaaa gaattaaaag aagccaatgc
     7981 gatttacagc tcttatactc caaaagcttt atttaatggt gcttttaata tacctttaaa
     8041 ttcttttatc acaagtgatt ttggcaaagc aagaactttt aatgaaaaag tagcaagtta
     8101 tcacagcgga acggacttta gagctaccac aggaacacct atttatgcag ccaattcagg
     8161 tgtagtaaaa attgcaaaag atcgttattt cgcaggaaat tcagtagtca ttgatcatgg
     8221 ttttggaatt tattcacaat attatcatct ttctaaaatc gatgttaaag taggacaaaa
     8281 gataaaaaaa ggcgaactta taggacttag cggagctagt ggtagggtaa gtgggccgca
     8341 tttgcatttt ggaattttag ctggaggcaa acaagttgat cctttggatt ttgtatccaa
     8401 atttaatgct atttttcaat gaaatttagt gactttttcc atgcttggct ccatgaaagc
     8461 tattataaaa atgctgtaag tataggaaaa aacggagatt tttttactgc tgtaagcgta
     8521 ggaaatcttt ttggcacact tttagccaag cattttttaa atttaataga taaaaaaatt
     8581 ttacaactcc ctttagaact tgtagaaata ggcgctaatg aaggatattt aagtcgtgat
     8641 tttttatccg ctttgcttga attaagacct gaaatttttt ctcaaatttc ttttttcgtc
     8701 atagaaccgc atgaaaaatt aagaacttta caaaaaaaga ctttagaagg agtggaattt
     8761 actcacaaaa atagtcttaa agaatgccat tttaagaacg cttttttctt ttgcaatgaa
     8821 ctttttgata gttttgcttg cgaacttata gatcatgata aaatggcatt tgtagaaaat
     8881 tttaaactta tttttaaaaa tatggatgaa aatttaatca caaaatgcaa agctttaaat
     8941 cttaaaaaag gtgaactcag tttagagctt gaaaattttt ttaaagattt aaaccaaact
     9001 tgtgagagat ttatatttgc gggatttgac tatggaactt taaatccaca aagttttagc
     9061 ttaagaatct atcaaaagca cgaagttttt agcccttttg aagtatcttt aaaagatttt
     9121 ttcggcaaaa gcgatctaac ttataatgtc aattttactc atcttcaaaa actcat
//
LOCUS       DARGED010000064         9125 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.064, whole genome shotgun sequence.
ACCESSION   DARGED010000064 DARGED010000000
VERSION     DARGED010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9125
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.064"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..2130)
                     /locus_tag="SFZ84_001138"
     CDS             complement(<1..2130)
                     /locus_tag="SFZ84_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002904025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8203257.1"
                     /translation="MIFEKQEYQVKCIDNIITLLKDFDFKRQDNLKECLKEFYNNTFL
                     PVQNISDKLNLDILMETGTGKTFTYLNLIFELHRQFKQNKFIIFVPRKAILESVKQNI
                     ELTKIYFYSEYQKYLKVYYYSDGKSQSAIINHYINNKDELSVLVLTNSAIDKKTNLLN
                     QQNESLFKSLSEFKSVFENIIDLKPISIIDEPHLLKGKAFNEYFSKINSLYFRFGATF
                     PKEKDYELSNMIYCLDSISAFKEYLVKQVKVHTLGVNTNNIFLKEYKNKKAIFTYTLN
                     GIEREETIKLQDSFSLLNNAILTQVKDNKAYFNDETIIEKKESYVLNNDEIKELLKKA
                     IDLHFEKEEKLFKKGIKALSLFFIPNITDFRGESPFIKNTFEELYKEKRKEILKLNLD
                     VRYKEYLEKDFDEAGNLRVHQGYFSGDKGSPDEKEANGVKLILEEKEKLLSFDTSLRF
                     IFSVWALQEGWDNPNIFTLTKLSNSSSQISIHQQVGRGLRLCVNNKGKRITHNYLDFD
                     DNQFYDINYLDILVSAREVHYIENLQKEVLDSSFRFDSQTLEKNFLENLLNVDLANDL
                     IYLLKKSKLISYNKEQSNYKILSPIYESIKDNEEFKELLGDKFDKFLNIFKENSNNTH
                     EQIINAKNQDNKVKIRTHLAKDFKELWEKINKKAQIIYQNINEQNIIDEVILAFNALN
                     IEKERVYYERKLFDAKQNSIITEEIKTL"
     gene            complement(2229..2981)
                     /gene="peb3"
                     /locus_tag="SFZ84_001139"
     CDS             complement(2229..2981)
                     /gene="peb3"
                     /locus_tag="SFZ84_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG8203258.1"
                     /translation="MKKIITLFGACALAFSMTNADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKDNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(3245..4417)
                     /locus_tag="SFZ84_001140"
     CDS             complement(3245..4417)
                     /locus_tag="SFZ84_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009649861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203259.1"
                     /translation="MRNWSLSGVFIGYMGYYLVRNNITLSTPFIQNQLNLSKSDIGTI
                     TGSMLIAYGISKGAMSVISDKAGPKKYMALGLILCALVNVLLGFSNSFYAYVGFVIAL
                     GVFQGMGVGPSFITLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAALLG
                     VSMANFNETYWHMNHFYTPAACAVIISLYALYAVKGNPKNEGLVDITEINEMRGIKTE
                     EIKAIETPNLSSFEIFYHYVLKNKNAWYVAWMDTFVYMVRFGLISWLPIYLLETKGFN
                     KEQIGIAFWLFEWAAIPSTLLAGYISDKIFKGYRMPPAIGAMVIIFFMIIGYFTSNNL
                     YMVIFFAAMAGCLVYIPQFLASMQTMEVVPAFAVGSCVGLHGFMSYVVGASLGTKA"
     gene            4672..5448
                     /gene="surE"
                     /locus_tag="SFZ84_001141"
     CDS             4672..5448
                     /gene="surE"
                     /locus_tag="SFZ84_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG8203260.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            5438..6091
                     /locus_tag="SFZ84_001142"
     CDS             5438..6091
                     /locus_tag="SFZ84_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEG8203261.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKAKGIVSKIDEDFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR"
     gene            complement(6166..6546)
                     /locus_tag="SFZ84_001143"
     CDS             complement(6166..6546)
                     /locus_tag="SFZ84_001143"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG8203262.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(6543..7391)
                     /locus_tag="SFZ84_001144"
     CDS             complement(6543..7391)
                     /locus_tag="SFZ84_001144"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG8203263.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIKNITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(7402..8226)
                     /gene="panB"
                     /locus_tag="SFZ84_001145"
     CDS             complement(7402..8226)
                     /gene="panB"
                     /locus_tag="SFZ84_001145"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG8203264.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            8446..>9125
                     /gene="blaOXA"
                     /locus_tag="SFZ84_001146"
     CDS             8446..>9125
                     /gene="blaOXA"
                     /locus_tag="SFZ84_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /protein_id="HEG8203265.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALN"
BASE COUNT         3111 a         1465 c         1292 g         3257 t
ORIGIN      
        1 caaggtttta atttcttcag tgatgataga attttgctta gcgtcaaaaa gttttctttc
       61 ataatacacg cgttcttttt ctatatttaa agcattaaaa gctagtataa cttcatctat
      121 aatattttgt tcgtttatgt tttgataaat tatttgtgct tttttattaa ttttttccca
      181 aagctcttta aaatctttgg ctaaatgcgt tcttattttg accttattat cttgattttt
      241 agcattgatg atttgctcat gagtgttgtt tgaattttct ttaaatatat ttaagaattt
      301 atcaaattta tcgcctaaaa gttctttaaa ctcttcatta tcctttatac tttcatatat
      361 aggagataag attttataat tactttgttc tttattgtaa gaaattaatt ttgatttttt
      421 taaaagataa attaaatcat tagctaaatc tacatttaat aaattctcaa gaaagttttt
      481 ttctagtgtt tggctatcaa atctaaagct agaatctaaa acttcttttt gtaaattttc
      541 tatataatga acttctcttg cactcactaa aatatcaaga taattaatat cataaaattg
      601 attgtcatca aaatctaaat aattatgcgt aattctcttg cctttattat taacacaaag
      661 tcttaaacca cgccccactt gttgatgaat gctaatttga gaagaagaat ttgaaagttt
      721 ggttaaagta aaaatatttg gattatccca gccttcttgc aaagcccaaa cgctgaaaat
      781 aaaacgcaaa gaagtatcaa aagaaagtaa tttttctttt tcttctaaaa taagctttac
      841 tccattagct tctttttcat caggacttcc tttatcacca ctaaaatagc cttgatgaac
      901 tcttaaattt cccgcttcat caaagtcttt ttctaaatat tctttgtatc gaacatctaa
      961 atttagcttt aaaatttcct tgcgtttttc tttgtaaagt tcttcaaaag tatttttaat
     1021 aaaaggactt tcgcccctaa aatctgtgat gttcgggata aaaaacaaac ttaaagcttt
     1081 gatacctttt ttaaaaagtt tttcttcctt ttcaaaatgc aagtcaatcg ctttttttaa
     1141 aagttcttta atttcatcat tgtttaaaac ataactttct tttttctcga taatagtttc
     1201 atcattaaaa taagctttat tatcctttac ttgcgttaaa atggcattat ttaaaagaga
     1261 aaaactatct tgtaacttta ttgtttcttc tctttctatg ccatttaaag tataggtaaa
     1321 aattgctttt ttatttttat actctttaag aaaaatattg tttgtattta ctcctaaagt
     1381 atgtactttg acttgtttta caagatattc tttaaaagca gatatggagt caagacaata
     1441 aatcatatta ctaagctcat aatctttttc ttttggaaaa gttgctccaa agcgaaaata
     1501 aagtgaattt atttttgaaa aatattcatt aaaagccttt cctttaagca aatggggctc
     1561 atcaataata ctaataggtt ttaaatctat gatattttca aaaacgcttt tgaattcaga
     1621 taaactttta aataaacttt cattttgttg attaagcaaa ttggtttttt tatcaatagc
     1681 actattggtt aaaaccaata ccgaaagctc atctttattg ttaatgtagt gattaataat
     1741 agcactctga ctcttaccat ctgagtagta atagactttt aaatattttt gatattctga
     1801 ataaaaataa atttttgtga gttctatatt ttgttttacg ctttctaaaa ttgcttttct
     1861 tggaacaaaa ataatgaatt tattttgctt aaattgccta tgaagttcaa atatcaaatt
     1921 taaataagta aaagtcttac ctgtgcccgt ttccattaaa atatctaaat ttaatttatc
     1981 acttatattt tgcactggta aaaaggtgtt gttataaaat tctttcaaac attcttttaa
     2041 attatcctgt cttttaaaat caaaatcttt taaaagcgtg ataatattat ctatgcactt
     2101 aacttgatac tcttgttttt caaaaatcat tcacattttc cgataaaata ttttaaatat
     2161 tttatcttat tttggcttaa ttaaaagaag ttatgcaaga atacacgcta aaaagcgtgt
     2221 atgaaggttt attctctcca gccgtatttt ttaaaaattt ctttagcttc cttagaactt
     2281 aaataagcaa taaaatcttg tgtttctttg ctcgcacctt ctttagctac cacattaaaa
     2341 gttctataaa caaccaaatc tttttctata gctacggcag ttcctatgtc aggattgctt
     2401 tttgaccagt caatccaagt gatccaagca tcggcttgat cttgtgcgaa aagctttctt
     2461 gcacttccac tatttggaac aaaggccacg atattgtttc taaaattttg tatggttttt
     2521 atatcttgag ttctacctat catatcttcc caaactccag ttccagaagt attgctcttt
     2581 ccagcacctt caggcacaac gattcttact tttttattag ccaaatcttt taaacctttg
     2641 atttttaaag gattatcttt ttgagtaagt atgatggctt ctctaaaata taaaggcttg
     2701 attttactca cattaaaatc ttttccaaaa tcactcgcta tagctaaagc cgattgatct
     2761 gaagcgccaa ataaaatatc tgcatctttt ttagcctttt caaaccaagt cgcttgaggg
     2821 ccaaaattta catttacttt aacgcctgtt ttttcgctat atttgtttgc tatatctttt
     2881 aaggccgtgt gtgggccacc tggtccgtaa aggtttacat ctgcatttgt catactaaaa
     2941 gctaaggcac atgcaccaaa taaagtaata atttttttca tagtatttcc ttttatgata
     3001 aatttttatt gattgaaggt aagattttag aaattatatg ttaataaata gttataatgt
     3061 aacaaaaata ttattaaaat ctaacttttg cttggtattt ttgcaagcaa aagttaaaat
     3121 tgttattgat gcttcttttt agcgctaaaa tgacataaag tagaacaaag tatacaaaga
     3181 atacaagcac taaggagcat gataagacca gcattccaac taccatagta atccacagcc
     3241 taacctatgc ttttgttcca agtgaagcgc cgactacata actcataaag ccatgaagtc
     3301 ctacacaaga tcctactgca aaagcaggaa cgacttccat agtttgcata cttgctaaaa
     3361 attgtggtat atagactaaa caccccgcca tagctgcaaa gaaaataacc atataaagat
     3421 tatttgaagt aaaatatcca ataatcataa agaaaataat caccatggcg cctatagcag
     3481 gaggcattct atagccttta aaaattttat ctgaaatata tcctgcaagt aaagtagaag
     3541 gtatagcagc ccattcaaaa agccaaaagg caatacctat ttgttcttta ttaaagcctt
     3601 ttgtttctag caagtaaata ggaagccaag aaataagccc aaaacgcacc atataaacaa
     3661 aagtatccat ccaagccaca taccaagcat ttttgttttt aagtacataa tgataaaaaa
     3721 tttcaaaact gcttaaattt ggagtttcta tagctttgat ttcttctgtt ttaatccctc
     3781 gcatttcatt gatttcagta atatcaacca aaccttcatt tttaggattt cctttaactg
     3841 cataaagcgc ataaagacta atgataactg cacaagcagc aggagtataa aaatgattca
     3901 tgtgccaata tgtttcgtta aaatttgcca tactcacacc caataatgct gctaaagcaa
     3961 aacctgaaag cgaaactata ggagcaacta tcccgcctcc tatattatgt gagatattcc
     4021 aaacggccgt gtaaattccc cgctcttttt taggatacca gtttgcaaga gtgataaaag
     4081 aaggacctac ccccatacct tgaaaaaccc caagcgcgat aacaaaacct acataagcgt
     4141 aaaaagaatt tgaaaaacca agtaaaacat ttacaagagc acataaaata agacctaaag
     4201 ccatgtattt tttaggacca gctttgtcgc ttataacgct cattgcaccc ttgctaatcc
     4261 cgtaagctat aagcattgag cctgtgattg ttccgatgtc tgatttactg agattaagtt
     4321 gattttgtat aaatggagtt gaaagagtga tattatttcg cacaagataa tatcccatat
     4381 atcctataaa aaccccactt aaactccaat ttctcatttt gtaatatcta ggtaaaattt
     4441 cctaaagagg aaatttaata gcttttgcct taggtttgaa aaaatcaaac atatttaaac
     4501 catccttact aactttatat ttttatagtt taaataatgt taatcgatat aaaataaaaa
     4561 aataattaaa aataatacga aatttatata atttaaaaat taaaatttta tactatgaag
     4621 ctttaaaaaa atatgttaaa atccagattt ttatcttttg caaggaagac aatgaaagaa
     4681 attcttatca ctaatgacga tggttatgaa agcgaaggac ttaaaaaact cattaagatg
     4741 ttaacaaaag aatttaaagc caagatcacc atagtagctc ctgctagtga aaaatcagct
     4801 tgttcgcact ctataaccct aaccaaacct ttgcgttttg ttaaagtggg aaaaagattt
     4861 tacaaacttg atgatggcac tccagcagat tgtgtttatc ttgctttgca tgctttatac
     4921 aaaaagcgtt tgcctgatct tgtaataagt gggattaata aaggtgctaa tgtaggcgag
     4981 gatattacct actcaggaac ttgcgcagga gctatggagg cggttttaca aggaattcct
     5041 gctatcgctc tttctcaatt ttataaaaaa agcgaaaaag aactagacta taaaaatgct
     5101 ttacaaatta ccaaaaaaat cattcaaaat atttttgata aaggttttcc tttggaaaaa
     5161 aaagaatttt taaatatcaa ttttcctgca aaatcaaaaa tcaaaggcat taaaatttgt
     5221 aaagcaggca aaagggttta taattttgaa gcccattcaa atgtcaatcc gagaggagta
     5281 gagtactatt ggcttgcagc ggcgaattta gactttgaag atgagaaaaa tagcgatatt
     5341 gccttactta aaaaaggcta cgctacaata acacctataa tgctggatct tacagcttat
     5401 gaaagaatga aaaaagttaa aaaatggtta aaggcaaatg atgaatgata gatttacacg
     5461 tataaaatgg ctagttggag aagaaaaatt tcaaaaaatt tcacaaacaa aagttttggt
     5521 ttgcggactt ggtggagtgg gtggaatttg cgttgatgcg ctttatcgta gtggttttaa
     5581 aaaccttact ttaatcgatg cggataaatt tgaaatcact aatcaaaatc gccaaattca
     5641 tagcgaaaat ataggcgaag aaaaggctaa agtatttgaa agaatttata aggctaaagg
     5701 tatagtcagc aaaatcgatg aagatttttt aaaaaatttt gatttaagcg agtttgatct
     5761 tatcatagat gccattgatg atatccctgc aaaagtagct ttggctcatc ttatagattt
     5821 taaaaaacaa atttttatct cttcaacagg tggagctaga aagcttgatc caacacgcat
     5881 taaaactaca agtattttta aaactcacgg cgatgcttta gcaaaaaaat ttcgttacga
     5941 gcttagaaaa tcaggtttta aaggaaattt tgatgtggtt ttttcagatg aggaagcgca
     6001 ttgtaaagat cttggatctt tcatgggtgt gactgcatct tttggtttag ctttagcaag
     6061 tttagcatta agaaaagttc ttgctagata agattgaaat ttaaatattt atcttagata
     6121 aatgaattta tctaagatag aaaaaattac aaaaatagtt agatattaga aaatagctcc
     6181 gtgtttttca taatttgtta tttttgtagc agtgttattt tcatctacaa agacaacttt
     6241 tggtttaaat gtttttgctt cttcttcgtt aaaatcagca taagacatga tgatcacctt
     6301 atctcccact tctgcaagac gagccgcagc accatttaag catacaactc cttcttcttg
     6361 cgtggctatg gtataggttt caaatctagc gccattattg acattgacta cttggacttt
     6421 ttcgtattct aaaattccac tcgcttgcaa taatttttca tctatactta tacttcctat
     6481 ataatcaagc ctagcttctg ttacgcttgc gcgatgtatt tttgatttga gtaaagtgat
     6541 attcatttta atccttgtac taaaaaatta tcaatgagtc ttgtttttcc aacaaaagca
     6601 gccaccgctc ctaaaacatt atcagtgata tttttaatat tttccatagt gttaaaatcg
     6661 actaattcta tataatcgat tttgattagt ttttcttttt ctaaaatatc tttcatagct
     6721 tggatgatct tagaagtatt tttttctccc tctcggacta atttttcagc caaaaaaatg
     6781 ctttgagata tagctagtga cgcttttctt tcttctttgc taagatatac atttctagag
     6841 cttttagcta agccatcttc ttctctaatg ataggacaaa tttgaatttt taaatcaaaa
     6901 tttaaatcat caaccatatg cctaacgact acgcattgct gcgcgtcttt ttgccccata
     6961 tagactatat cagggtttag gatattaaaa aatttagtta aaaccgtgca aacgcctcta
     7021 aaatgccccg gtcttttagc cccgcaaagt ttatcagtga tcgtattcat atctacatag
     7081 gtgctaaaat tcttaagata catttgagtt gcatcgggga taaaaaccat atcaacgcca
     7141 ttatcttgac acattttaat gtcgcgttct aaatctcttg gataactaga aaaatcttca
     7201 ttaggcccaa attgcatagg atttacaaag atacttacta taaccttatc ttgtgttttg
     7261 gcatgtttga ctaaacttaa atgtccatcg tgtaaaaaac ccatggttgg aacatagcct
     7321 atactaagtt gatgtgattt ccaatctttt acaatttgtt ttgcttcttt gacagaagta
     7381 atgacttgca tatttgtatc cttagtataa tttatctaat aattcatcat ctaaataatc
     7441 aaagctgtgc tcttgggaag gaaaaatacc gcttttaact tcatctctat atttttcaac
     7501 tcctacttga ggatcaattt tatcaaaatg ctttacaaat tttgctttaa aatctttatt
     7561 taaacccaaa agatcgtgat aaactaaaac ttgtccatcg cagtatttgc ctgaacctat
     7621 gccgattgtt ggaatttcta aaatagagct tattttttgt gctagtttta caggcacaca
     7681 ttctaaaacc aacatacaag cacccgcatc ttgcacagct tttgcatcat ctataatttt
     7741 ttgggctgat tgtaaatctt taccttgaac cctatagcca cctagcatat ttacagcttg
     7801 tggggttagt cctaggtgag caacgacggg tattcctgat tgggaaatca atttaatctt
     7861 acttgcgatt tctatacccc cttccacttt taccccattt gcgtggcttt ctttgataaa
     7921 tcttgaggca tttaagatag cgtcacgatc tgaactttga taagacataa aaggcatatc
     7981 agcaagtacg aaagactttt tagctccgcg agaaacagct ttggtaaaaa tcaacatttc
     8041 atccatagta acacttaaag tatcttgcat accaagtacc gtcatggcta atgaatctcc
     8101 aaccaatata atatctatat cgctattgtc taaaattctt gcactatgat aatcatacgc
     8161 acttaccatg gttatttttt catttttggc ctttttttcc aaaaaactaa tcatactttt
     8221 tctcattttg catacctcaa tttttagcta taaaataata agcaaaaaac tagcatataa
     8281 tttttcataa atagtaaatg aatgataaag taagttatat ttaatcgatg gattgcttta
     8341 atggttacaa ttttagaaaa tttcagttca tgttaaagga tatttaaata aaataaagct
     8401 ttaaaaagta ttttgtttaa aattatttaa atagaaagat attttatgaa aaaaataact
     8461 ttatttttac ttttcttaaa tttagtgttt gggcaagata agatattaaa taattggttt
     8521 aaagagtata atacaagcgg cacttttgtt ttttatgatg gaaaaacttg ggcgagtaac
     8581 gacttttcaa gggctatgga gactttctct cccgcttcca cttttaaaat ttttaatgct
     8641 ctaattgcac ttgatagtgg tgtgataaaa actaaaaaag aaatttttta tcactataga
     8701 ggtgaaaaag tatttttatc ttcttgggcg caagatatga atttaagttc agctataaaa
     8761 tattctaatg ttcttgcttt taaagaagtg gcaagaagaa ttggtatcaa aactatgcaa
     8821 gaatatttaa acaagcttca ttatggtaat gctaaaattt ccaagatcga tactttttgg
     8881 cttgacaact cactaaaaat aagcgctaaa gaacaagcaa ttttgctttt tagactttca
     8941 caaaatagct tacctttttc tcaagaagca atgaatagtg ttaaggaaat gatttattta
     9001 aaaaatatgg aaaatttaga gctttttgga aaaacaggtt ttaatgatga gcaaaaaatt
     9061 gcttggattg taggttttgt gtatttaaaa gatgaaaata aatataaggc tttcgcgcta
     9121 aattt
//
LOCUS       DARGED010000065         9065 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.065, whole genome shotgun sequence.
ACCESSION   DARGED010000065 DARGED010000000
VERSION     DARGED010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9065
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.065"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            146..418
                     /locus_tag="SFZ84_001147"
     CDS             146..418
                     /locus_tag="SFZ84_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG8203266.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            405..968
                     /locus_tag="SFZ84_001148"
     CDS             405..968
                     /locus_tag="SFZ84_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8203267.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENKQENEFEDGHA
                     LNYQDFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIEN
                     VMPHFWANNRFIKLQEKLMGFKSEIKT"
     gene            952..2235
                     /locus_tag="SFZ84_001149"
     CDS             952..2235
                     /locus_tag="SFZ84_001149"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG8203268.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSLILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2239..2550
                     /locus_tag="SFZ84_001150"
     CDS             2239..2550
                     /locus_tag="SFZ84_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG8203269.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKI
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2547..3641
                     /locus_tag="SFZ84_001151"
     CDS             2547..3641
                     /locus_tag="SFZ84_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG8203270.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3638..4483
                     /locus_tag="SFZ84_001152"
     CDS             3638..4483
                     /locus_tag="SFZ84_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG8203271.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4493..6391
                     /gene="tkt"
                     /locus_tag="SFZ84_001153"
     CDS             4493..6391
                     /gene="tkt"
                     /locus_tag="SFZ84_001153"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG8203272.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            6393..7502
                     /locus_tag="SFZ84_001154"
     CDS             6393..7502
                     /locus_tag="SFZ84_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8203273.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKIAKEGLNSHFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALIVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            7503..8225
                     /locus_tag="SFZ84_001155"
     CDS             7503..8225
                     /locus_tag="SFZ84_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8203274.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHLDGGEYEILGYKLKNINEKDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8228..>9065
                     /locus_tag="SFZ84_001156"
     CDS             8228..>9065
                     /locus_tag="SFZ84_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG8203275.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEIGIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLIQNLELFKRVLIESNILIENLQ
                     NSP"
BASE COUNT         3309 a         1311 c         1580 g         2865 t
ORIGIN      
        1 taacaaaaac tttacagctt atgatttagg atttagcata caaaataatg acgaaccttt
       61 ttaatttatt taaatttcaa gccttaattt accttttttt aaacacaatc acgctaaagt
      121 atataaaaat ttttaaggat aaattatgat gccttttagt gatgaagagc ttataaatcc
      181 tgttaaagca agtttagaaa agagcttgcc tatgcttgaa cgtgatggcg gagggcttga
      241 atttttagga attaaaaatg ggatcgttta tgttcattta ataggagctt gtaaaggctg
      301 tgcatcgagt ggaacaacgc taaaatacgg tcttgaaagg caacttaaga ttgatattca
      361 tccggaaatc actataatca atttaaacgg cggagcagac gaatttgcaa aattataaaa
      421 aacttggaat tgaacatttt tacaagaaag attttaaaac tgcaaaaatg tatttttcta
      481 tggcttatga aaaacgcaaa aataaacgct tgctaaattt tatctgcctt tgtgatcttg
      541 ctttaaaatc tcctaaagaa gcttctttac tttttgattt ttatatagaa cattacaaaa
      601 tctctagcat tgataaagac ttagaagaaa ttttaagtac aattgaattt aaaaaacaag
      661 aaaacaaaca ggaaaacaaa caggaaaacg aatttgaaga tgggcatgcg ttaaattatc
      721 aagatttttt aaaaagcgaa gaagaacttg gctttcaaaa aagttttgaa aatatcatta
      781 acagcactaa attagttatt gataatcgtg atgatttttt agattttttg gaaaaattac
      841 ttgataatgg ctataaagat atgactttaa attacataga aaatgttatg cctcattttt
      901 gggcaaataa tagatttatc aaactccaag aaaaactcat gggatttaaa agtgaaatta
      961 aaacttgaaa attcattcat tacagataac accttagagt gtgaaaaaga atgctttttt
     1021 ttgcaaacca cacaaaatgc taaatttcac gctcaagcct tagaaaaagg tgcaaaaatc
     1081 attgatgtaa atgagtgtaa aaaactttta aaaatcgatg aaaagattca aatcatagga
     1141 atcacaggaa ccaatggcaa aaccacaacc gcagcagcga tttattctat cttattggat
     1201 ttaggttata agtgtgggct ttgtgggaca agaggagctt ttatcaacga tgaacaaatc
     1261 gatgaaaaat ccttaaccac ctcccttatt cttaaaacct tagaatacct acaaatagcc
     1321 actcaaaaaa aatgtgattt tttcatcatg gaagtaagct cacacgcgct cgttcaaaac
     1381 cgcatcgaag gcttaaattt tgctgctaaa atttttacca atatcactca agatcattta
     1441 gattttcacg gtacttttga aaattataaa gaagcaaaag aacttttttt taccgatgag
     1501 agtttaaaat ttatcaacaa agatgctttg gctattaaat ttaatgtgcg taatgctttt
     1561 acttatggca tagaaaatcc tgctttatat caaatcaaag cttattcttt agaagaaggc
     1621 attagtgcta ttgtaacaaa taaaaatcaa acttttcaca tagactcgcc cttgctagga
     1681 ctttttaatc tttacaatct tctagttgct agtgcttgtg tgaatgaact cgtaaagcct
     1741 gatttaaaag acttggaaaa agctatcagt ggatttggcg gggtttgtgg cagggtagaa
     1801 caagtagcaa aaggtgtgat tgtagatttt gctcatacgc ccgatggcat tgaaaaagtg
     1861 cttgacactc ttaaaaataa aaaactcatc gttgtttttg gagcaggtgg agatagagat
     1921 aaaaccaaac gccctttaat gggaaaaatc gtcgaacatt ttgcaaaaat tgctatcatt
     1981 acaagtgaca atccacgcag cgaagaacca aaaaccatca tggaagaaat tttatcaggc
     2041 tttactaaaa aagaaaaagt tttaatgata gaagatagaa aagaagctat aaaaagagct
     2101 ttagaactaa aagaaaatga cgatttagtc gttattttag gcaaaggtga tgaaactact
     2161 caagaaatta aagggataaa atatcctttt agtgataaag tagttgttaa tgaaatttta
     2221 aaaaatcaag gataatcaat gtttgaaaat atggattttt ctaaaatggg agaactttta
     2281 aatcaagttc aagaaaaagc aaaaaatata gaactagaac ttgcaaatcg tgaatttagt
     2341 gccaaaagtg gagcaggact tgttaaaata agtgccaatg gaaagggtga aattatcgat
     2401 gttagcattg atgattcttt acttgaagat aaagaatcct tgcaaatttt acttatttct
     2461 gcaattaatg atgttttggc tatggttgca caaaatcgtt caagtatggc gaatgatgtt
     2521 ttaggcggtt ttggaggtat gaaattatga aaaaaatttt aattatttgc atgcttttta
     2581 ctttgtcttt tggtatagaa agacctaaat ttgaagattt tttagcaggt tatgaaagaa
     2641 ataaggcaag catgctcaac tatgaaggaa tgccagcttt tgcactcagt gaaaatttac
     2701 ttgctgtgtt aaaacagcct aatgctaagc ttaacaaata tgtaaaatac gatccatttt
     2761 taaatttata tcttgtaaga actgacttta gcctaatccc tactcctatg ggtgatgaag
     2821 aaaaacttac tcgtaatgat tgggttggaa tttgggatcc taataaacct tatatagggc
     2881 atattaagta tttagctcaa aatattgatg aaaaagatca acttgatttt aattctaaaa
     2941 taggactttt agggactcca tgctgtgaaa tgatggggat tgctttaaat aatagctctt
     3001 ttataggcaa tcgctattta aaacatttta tgaaatataa cgatgtttat tggggggata
     3061 ttggcgttga ttttgttgtt cgagaaaata aaatttatgt taacaatgta agaaaaaatc
     3121 cacaattttt aatcaacgat caagttataa gtgttgatgg cttgcccgcc aatgatttaa
     3181 gaaaactcaa tgaaaaaatt ctttttgcag atcgcggaag cactctttat tttcaagtgt
     3241 tgcgtgataa tatggattta aatatttcta ctgaagtttt tgcaaaagat ttgagcaaat
     3301 ttaaccttcc tgattctaaa ccaaaaccaa aaattacaaa tttcacaagc aatcttggtt
     3361 taacggttaa tactagtctt gttgtaacca aaatagatcc aaaatcaaaa gcatcaaatg
     3421 caggatttat ggtaggagat aaaattttac gcgttaataa tattatttta aataatttta
     3481 aagaattaca aaatatttta agtgctggta atgactttag catcttaatt gaacgcaaaa
     3541 gtactaaatt acctttatca aatttcaaca atgaactagg cggaaatgcc aactcaggtg
     3601 gcgatggtaa atttcaattt ttcataaggc ttactaagtg aatttaaaag aactttttat
     3661 ccatcactta gaaaaaaatc tacctaaagt tgaaagcttt catccttttt ttaatgaagc
     3721 tttagcactt atgttaaaag cggggggaaa gcattttcgc gcacaattgc ttttaagcgt
     3781 agtacaaagc aataaacctg aacttttaaa tcaagcttta gatgtggctt tagctttaga
     3841 gtttatccat acttattcac tcatacacga tgatttaccc gctatggata atgcagactt
     3901 tagacgagga attccaacct tacacaaaag ctacgatgaa actacagcca tcttagtggg
     3961 tgatgcttta aatactgaag cttttttagt tctaagtcat gctcatttaa aagatgaaat
     4021 caaaatcaaa ctcatcaaaa cccttgcctt taatgcagga cttaatggaa tggtcatagg
     4081 acaagctatt gattgttttt ttgaagacaa aagactgagt ttaaatgaac ttgagttttt
     4141 acacacacat aaaaccgcaa gattaatcgc tgcagcttta aaaatgggtt gtgaaatttg
     4201 cgaacttaac aacgaagaaa gcaatcaaat ttacaaactt ggtttaaaac taggactgat
     4261 ttttcaaatc aatgatgata ttatcgatgt aaccacaagt caagaacaaa gcggaaagcc
     4321 tactaacaac gatattcata aaaattcttt tgtcaattta cttggacttg aacaagccat
     4381 aaaaacaaaa gaaaatcttc ttagtgaatg cgaacaagac ttagaaaaac ttaatgaaaa
     4441 actcgcacaa atgatacaaa atttaataat tcaatactta taaaggcaaa aaatggacat
     4501 tcaaatttta caagaacagg caaatactct aagattttta agtgctgata tggtgcaaaa
     4561 agcaaactca ggacacccag gtgcaccttt gggtttagca gatattttaa gtgttttaag
     4621 ttatcattta aaacacaatc ctaaaaatcc cacttggcta aaccgcgata gacttgtatt
     4681 ttcaggcgga catgcaagtg ctttgcttta tagtttttta catttaagcg gctatgactt
     4741 aagcttagaa gatcttaaaa atttccgcca acttcattct aaaacccctg gacaccctga
     4801 aatttcaact cttggagtag aaatcgctac aggcccttta ggacaaggcg ttgccaatgc
     4861 tgtaggcttt gctatggcag caaaaaaagc acaaaatttg ctaggcagtg atttaatcga
     4921 tcataaaatt tattgtcttt gcggagatgg ggatttacaa gaaggcattt cttatgaagc
     4981 ttgttcttta gcaggacttc acaaacttga taacttcata cttatttatg atagcaacaa
     5041 tatctccata gaaggcgatg taggtttagc ctttaacgaa aatgtaaaaa tgcgttttga
     5101 agcacaagga tttgaagttt taagtataaa tggacacgat tatgaagaaa tcaataaagc
     5161 cttagaacaa gctaaaaaat ccacaaaacc ttgtcttatc atcgcaaaaa caactatagc
     5221 aaagggtgca ggagagcttg aaggcagtca taaaagtcat ggcgcacctt tgggtgaaga
     5281 agtgattaaa aaagccaaag aacaagcggg ttttgatcca aatatcagtt ttcatatccc
     5341 acaagcaagc aaaatccgct ttgaaagtgc tgtagaactt ggggatttag aagaagcaaa
     5401 atggaaagat aagcttgaaa aaagtgctaa aaaagaactt ttagaaaggc tattaaatcc
     5461 tgattttaac aagatagctt atcctgattt taaaggaaaa gatcttgcta caagagatag
     5521 taatggtgaa attttaaatg ttttagctaa aaatttagaa ggatttttag gtggaagtgc
     5581 agacttaggc ccttcgaata aaacagaact tcacagtatg ggagactttg tagaaggtaa
     5641 aaatatccat tttggtatca gagaacacgc tatggcagcg attaacaatg cttttgcaag
     5701 atatggaatt ttcttaccat tttcggcaac ttttttcatc tttagcgagt acttaaaacc
     5761 tgccgcaaga atagcagctc taatgaaaat caaacatttt ttcattttca cacacgatag
     5821 cataggcgtg ggcgaagatg gaccaacaca ccaacctata gaacaactta gcacttttag
     5881 agctatgcca aattttttaa cctttagacc tgctgatggg gtggaaaatg tcaaagcttg
     5941 gcaaatagcc ctaaatgctg atattccgag tgcttttctg ctttcacgcc aaaaactcaa
     6001 agctctaaat gaacctgttt ttggagatgt aaaaaatgga gcgtatttac tcaaagaaag
     6061 caaagaggct aaatttacac ttttagcaag tggaagtgaa gtttggcttt gtttagaaag
     6121 tgcaaacgaa cttgaaaaac aaggttttgc ttgtaatgtt gtttccatgc cttgttttga
     6181 actttttgaa aaacaagata aagcttatca agaaagattg ttaaaaggtg aagttatagg
     6241 tgttgaagca gcacattcta atgaacttta taaattttgc cataaagtgt atggcataga
     6301 aagttttgga gaaagtggca aagacaaaga tgtgtttgaa cactttggat ttagcgtttc
     6361 aaagcttgta aattttatcc ttagcaaata aaatgaatac aaatttcaaa tttcaaaata
     6421 acactctttt tatctttgga atttgggata aaacaagcat ttataagtta aaaataaaag
     6481 attttttagc tttgatccaa agcaaggaag tgatttttga ttttaaagat ctaaaagcaa
     6541 tcgataccgc tggagtgaga tttttccttg ctttggaaaa tgatcttaaa gataaaaata
     6601 ttaaaatcgc caaagaaggc ttaaattcac actttcaaac cctttttgaa ctttgtgaaa
     6661 aaaactacca aagactaagc aaaacaaaaa aatcacataa aaatttcagt gaatacttta
     6721 tcgatcttgg aaaattaagt ttagaacttt taaaaatttt aagaaaattc atcaatttca
     6781 caggagcttt tttcacaagt ctttttttat gccttaaaaa tcctaaaaat tttcgcttta
     6841 ttgctttttt atatcatata gaaaattctg cttttaaagc cttacctata gttattttaa
     6901 ctgctctttt agtaggagtg gttttagcct atcaggctgc ttatcaactc gcacaatttg
     6961 gagccaatat tttcatagtg gatttgatgg gaatttcagc cactagagaa cttgcacctt
     7021 taatcgctgc catagtgatc gcaggaagaa gtgcaagttc ttataccgca caaattggag
     7081 tgatgaaaat tactgatgaa attgcagcta tgaatactat gggttttcgt tcttttgaat
     7141 ttattattat tccacgtgtc atggctttga tagtggctat gcctttaatc gttgccatta
     7201 gtgatgcgat cagtattata ggtggaatga tggttgcaaa attaaatctt gatatttctt
     7261 ttgccgaatt tttaagacgt tttagagagg ctgtagatat aaaacatatc tttataggac
     7321 ttgcaaaagc acctattttt ggatttttaa taggacttat tgcttgtttt cgtggttttg
     7381 aggtaaaaaa cactacacaa agcataggaa tttatacaac aaaaagcgtt gtaaatgcta
     7441 ttttttgggt gatagctttt gatgctttat tctctgttgt tttaacttct gcaggaattt
     7501 aaatggttat taaagcgcaa aatatcatta caaaatttgg agaaaaaatt gtccatgatg
     7561 gcgtaagttt tgaaatcaaa aaaaacgaaa tttttggtat tttaggaggt agtggaagtg
     7621 gaaaatccgt ccttttaaaa caaatgctta tgcttgaaca tcttgatggt ggagaatatg
     7681 aaattttagg ctataaactt aaaaatatca acgaaaaaga tgcacttgct ttgcgtaaaa
     7741 aatggggtgt ggtttttcag tttgctgcac tttttagctt ttttaatgtt tatgaaaata
     7801 tcgctattcc tttaaaagaa tacactcatt tagatgaaaa tagcatacaa gaactggttt
     7861 taatgaagct aaaaatggta ggcttaaacg aaagtgtttt aaaacaattt ccaagcgaac
     7921 ttagtggcgg tatgcaaaaa agagtggcaa ttgctagagc tttagcactt gatagtaaat
     7981 tgcttttttt agatgaacct acttcaggac ttgaccctca tagtagtcgt gaatttgacg
     8041 atttggtttt agagttaaaa aaaagttttg atctaaatat cattttggtt acacatgata
     8101 aagaaagtat gaaaaattta ctcgatcgtt ttatcatttt agaaaataaa aaagttggat
     8161 tttgcggcac ttatgaagaa ttacgcttgc aaaatgaacg actttttaaa agatttatgg
     8221 agtaaaagtg gaaaatagag caaattattt ttttgtagga ctttttgttt ttggagtatt
     8281 ttttgcaagc cttggtttca tactttggct tggtggatac tctaaagaag aaagttttaa
     8341 gtattatgaa attcacacac aagaatccgt tgcaggactt ggcataaaag cacccgtaag
     8401 gcttttgggc gtggaagtag gtagcgtaga agaaattggc atttataatc aagatgaact
     8461 cggcgttaac atacgcatca aggtcaaaaa caatactcct ataaaagaag atacttttgc
     8521 tactttgcaa cttcaaggta ttacaggact taaatttgtc caacttcaag gcggaagtaa
     8581 aaatagcaaa gatctagtat ctatccacgg aaaacttccg gtcattcctt ttaaagaaag
     8641 ttttttagcg accatagaca gacaaagtga acatattttt tctttggtta aaacggccga
     8701 tgataaatca aaagaacttt taagcgaaaa aaatcttaaa aatctagaaa tccttttgca
     8761 aaatctagca gaactaagtg caaatttaaa cgctaattct aaaaatttaa gccttaatct
     8821 ttcaaacgca agtttaaaaa taggaaaaat ggctgataat ataagcctta gtgcgcaaaa
     8881 tttcaactcc agtcttaaag acataaaaga aagcacaatg attttaaaaa atttcataaa
     8941 aaaagctgat gaaaaattaa acacttatga tgatattaaa gcatctttaa ttcaaaattt
     9001 agagcttttt aaacgagttt taattgaaag caatattcta atagaaaatt tacaaaacag
     9061 ccctg
//
LOCUS       DARGED010000066         8776 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.066, whole genome shotgun sequence.
ACCESSION   DARGED010000066 DARGED010000000
VERSION     DARGED010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8776
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.066"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..729
                     /locus_tag="SFZ84_001157"
     CDS             <1..729
                     /locus_tag="SFZ84_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8203276.1"
                     /translation="ALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNN
                     PSQDDLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNG
                     ANVNQANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTP
                     YFITFCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKK
                     ENADYLKSLGLKANENLFYGGSLE"
     gene            726..1475
                     /locus_tag="SFZ84_001158"
     CDS             726..1475
                     /locus_tag="SFZ84_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG8203277.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFIGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            1472..3205
                     /locus_tag="SFZ84_001159"
     CDS             1472..3205
                     /locus_tag="SFZ84_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG8203278.1"
                     /translation="MNKFLASLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSANIFKAQHLTFVNYYNTTIESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASVNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSIWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            3202..4275
                     /gene="trmA"
                     /locus_tag="SFZ84_001160"
     CDS             3202..4275
                     /gene="trmA"
                     /locus_tag="SFZ84_001160"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG8203279.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKNKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQGRKIFYEFNNDCFIQPNTTINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRAE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(4262..4678)
                     /locus_tag="SFZ84_001161"
     CDS             complement(4262..4678)
                     /locus_tag="SFZ84_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG8203280.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNTNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            4797..5210
                     /locus_tag="SFZ84_001162"
     CDS             4797..5210
                     /locus_tag="SFZ84_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG8203281.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILLKLVEKNIKNLWLQLG
                     ISNETAKEECKKLDINFIQNRCIMLEYPYFKTKEE"
     gene            5210..6421
                     /locus_tag="SFZ84_001163"
     CDS             5210..6421
                     /locus_tag="SFZ84_001163"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG8203282.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATILHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(6418..7143)
                     /gene="truA"
                     /locus_tag="SFZ84_001164"
     CDS             complement(6418..7143)
                     /gene="truA"
                     /locus_tag="SFZ84_001164"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG8203283.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(7140..8165)
                     /locus_tag="SFZ84_001165"
     CDS             complement(7140..8165)
                     /locus_tag="SFZ84_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8203284.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(8165..>8776)
                     /locus_tag="SFZ84_001166"
     CDS             complement(8165..>8776)
                     /locus_tag="SFZ84_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG8203285.1"
                     /translation="FLKAKCQTCKCHLPISLLINEILGIILLILVYSLSQNFYDFLFL
                     SLFLFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYTFRESEILHFLIFKEFSGGFLLN
                     AFSFGGFVFLLKSLVFFLMNFRKKDEILENLGDADIIIMSCIGGILGFEYGFLVLLIA
                     SILTLPFFIFFKIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
BASE COUNT         3270 a         1348 c         1308 g         2850 t
ORIGIN      
        1 gccttaaacg aatttttaaa ttgggctgtt ggtgaaacaa aaatttacaa agacattagt
       61 cctttagcaa aaatcatgtc aaataaaaat tattcagtat cttatataca agattttatt
      121 ttttcaaata atccaagcca agatgacctt actatagcct tgcaagcagc gcttctaaat
      181 caaagagaaa aagaaatttt agaacttttg attcgttttg gcgctaggat tgacgaaggt
      241 tatgaaagtg ctatttttta tgcattggaa agttatgaaa atacaaactt tttaatccaa
      301 aatggagcaa atgttaatca agccaatgcc tttggtaaaa ccccactttt ttatgccata
      361 gagtttaatc gtcttgatat cataaaacta cttcttgata atggagcaaa tgttaatcaa
      421 aaatatatta ataacaatga aaaattagca ttaagtgcga acataggttc aaatacgcct
      481 tattttatta cattttgtgc tctagagcac acttcaaaaa atgttttaat gcatgctgca
      541 gcctatggaa atgttgaaat tttaaaactt cttatttcaa aaggagcaaa ttttaatgct
      601 gttgatgatc ttggttttaa tgcactcgac tttgcgctat cagcaggtaa aaaagaaaat
      661 gctgattatc taaaaagctt gggtttaaaa gcaaacgaaa atctatttta cggaggtagt
      721 ttagaatgaa aaccgcattt attacaggag ctagttcagg ttttggtaga gcttgcgttg
      781 aagcttttat acaagaaggc tacaaagtaa tcgcccttgc tagacgcaaa gagcgtctag
      841 aagagctaaa aaatgcttac aaagataaga tttacaccct ttgcatagat gtaagaaatc
      901 aaaaagaaat ctttgaagct attgaaaatt tacctaaaga atttcaagaa attgatgtgc
      961 tttttaataa tgcaggttta gctttagggg tagatgaatt tgataaatta aaccttgaag
     1021 atattaacac tatggtagat acaaacatca aaggattttt atatgttgca aaagctgtta
     1081 ttcctatact tcgcaaacaa aaaaatgctt atatttttaa cttaggttcg gttgcgggac
     1141 gcaatcctta ttttggaggc aatgtgtatt gtggaaccaa agcctttata ggacaatttt
     1201 cattggcctt aagaaatgat cttagaggaa gcaatatcaa agtaacaaac attgctccag
     1261 gactttgcaa aactgaattt agtgaagtgc gttttaaagg agatatccaa aaagctgatg
     1321 cagtgtatga aaatacgcaa tttatcagtg ctaatgatat tgccaaagtg gtaatgtcta
     1381 tcattaacct accaagccat attaatgtta atgaaatcga gcttatgccg gtaacacaaa
     1441 cttggaatgg attttatata gaaagagatg aatgaataaa tttttagctt cattgttttt
     1501 acctttagtt gcatttgcaa actcctcaga agcagctgca aatgctaatt tatttggagc
     1561 ttttacgctt ataccacctt tagttgctat tgctttagcc tttatcacaa aagatgttat
     1621 tttatcgctc tttactggag ttttaagtgg aacttttcta cttagccttt ctgcaaatat
     1681 ttttaaagca caacatttaa cttttgtaaa ttattacaat actacaatag aatctttttc
     1741 aaaaattatt tcctatatct taggttcaac ttcagatcca gtaaatgcag gaatcatttt
     1801 acaaattctt tgtataggtg gtcttgtggc acttatcaca aaaatgggag gtgcaaaagc
     1861 tgtagcatta aaatttgcca aaagagccaa atcagctgta tcagctcaag ttaacacttg
     1921 gtttttaggg cttttaatat tttttgatga ctatgctaat ttactaatcg taggtccaat
     1981 tatgcgtcct ttggcagata aatttaaaat ttctcgtgaa aaatttgcct ttattatcga
     2041 ctctaccgca gctcctgtgg caggaatagc tgtaatttct acttggatag gcttagaagt
     2101 ttctttaatt aaaaccgctt atgaacacat aggcattagc aatattagtg cttttggaat
     2161 ttttgttgaa accatacctt atcgttttta taatatcttc atgctttttt ttgtagtcat
     2221 gactgcaatc atggggcgtg agtttggttc tatgtacaag gctgaagtgc gtgcaagaac
     2281 cacaggacaa attgctcctc tacctaaatc aggcacacta gatactactg aattagaaga
     2341 tcagttttta gcaccaaaag aaggtattaa aattcgtgct tttgatgcta ttgttcctat
     2401 ttttacttta atcattttag ctatattagg attttatttt aatggactta gcactttaga
     2461 aggcgaagaa cttgcaaaag caagtgtcaa tcctttgtct tttgaaactt ttagggctgc
     2521 ttttggaaat gctgattctt ctgtggtgtt attccaagct gctttgtttg ctgctattgt
     2581 agcgattttt atcggggtgc gtcgtaaaat tttcaatctt aaagaagcgg tagaaacttg
     2641 gatatatggc tggaaaacca tgatttttac catagtattg cttttatttg cttggtcgct
     2701 ttcaagtata gtaaaagatc taggaacttc tttatttatc actagtttgc ttgcagataa
     2761 attgcctgag tttattttgc ctgctactat ttttgctttt gcttcagcca tttcttttgc
     2821 cataggaaca agctatggaa ctatggggat tttaatgcct ttggctgtgc ctttagctca
     2881 tgaaatcgcc aaaatcaatg gcatggatgc aaacgctatg catcattata tggttattaa
     2941 tataagctgc gttttaacag gtgcgatttt tggaaaccat tgttcaccaa tttcagacaa
     3001 tgtaatcctt tcatctatga gtgcaaaatg cgatcatatg gagcatgtaa gaacacagat
     3061 tccttatgct ttatttatct gtggcatttc tttaatcgct ggatatattc ctgtatcttt
     3121 aggacttagc atttggtttg tcttgccttt aaatttcata cttattgcac ttttactaag
     3181 acttatcgga aagaaagttc catgagtctt gaaaattttg gaaattttct cactttagat
     3241 gaaaaacatt ctttcataaa aaaatatttt aaagaatttt atacaaagga ttttaaactt
     3301 tttgcttcaa aagataagca ttatcgtaca agagctgaac tttcatttta tcatgaaaac
     3361 gatacgcttt tttatgcgat gtttgatcca aaaaacaaaa aaaagtacat tatagaatat
     3421 ttagattttg ccgatgaaaa aatttgtgct tttatgccaa aacttctaga atacttgcgt
     3481 caagataata aattaaaaga aaaacttttt ggtgtagaat ttttaaccac aaagcaagaa
     3541 cttagcgtaa ctttactcta tcataaaaat atagaagata taaagtcaaa tttagaaaat
     3601 ttaagcaata atcttcatat caacctcata gcaagaagta aaggcaaaaa gcttattttt
     3661 aaaacagaaa atctaagaca aactttaaat attcaaggta gaaaaatatt ttatgaattt
     3721 aacaacgatt gttttattca acctaacact actataaatg aaaaaatgat tacttgggtg
     3781 tgtgaaattt taaacactca aaaaagaatg gatttgcttg agctttactg tggatatgga
     3841 aattttactt tagctttagc gccattcttt tttaaaattt tagccactga aatttcaaaa
     3901 agcaatatta attttgcttt aaaaaattgc gagcttaaca atacaacaaa tatccacttt
     3961 gcaagacttt caagcgaaga attaagtctt gctatcaaaa aagaaagaga attttttcgt
     4021 ttaaaagata ttcgattaga tgattttaat ttctctcatg ttttagttga tccaccccgt
     4081 gcaggacttg ataaaagcgt aattgactta ataaaaaaat atgaaaatat tatttatatt
     4141 tcttgcaatc ctatcacttt aaaagaaaat ttaaaagaat taagcctaac acatagagcg
     4201 gaagagtttg ctctgtttga tcaatttgtc aatactccac atcttgaatg tggagtattt
     4261 cttagcaagg tataaaaaaa taattcatta atttagccag tattactatc gcgatacaaa
     4321 gcacaaatac aaaagggtgg ataaaaacac cgagtggatt tttcttcttt aatataaaat
     4381 gacaaaataa agaaaaaaca actaaagata aaattccaaa agccaaaata atttttacag
     4441 caaaaagtaa atttaaaggt ttaaaatgaa aacctgccaa agcacctccg cttaaaaaaa
     4501 gcaaaagaac cacaaaaggc attattttaa ccccagtagc actaaaaaga cttttgtcaa
     4561 aattagtatt tttcttttta actacaccca aaacaaatac atcaacaaac aaataaccta
     4621 taaacaaaat agcacaaaga agatggattg ttaaagtata tggataaaat tcttccattt
     4681 ttccctcctt attaaacttc ggaatttgct atattataac acttttttca ttttttaaat
     4741 tcactttagt taatttttta atcatttaag ataaaatacc aaaacaaagg ttaacaatga
     4801 atgaaaaaga aactatctct tatattataa atacaagtaa aaatattgcc atatttgctt
     4861 taagtccaga taagacaaaa gcttcttata gggtagcaga atttttacaa agaaaaaatt
     4921 ataaaatttt tcctatttat cctaaagaag agtttatttt aaatgaaaaa gtttatagaa
     4981 atttagatca aatagaagaa aaaatcgata cacttatact ttttagaaaa ggcgaagtgg
     5041 cactagaaat tcttcttaag cttgttgaaa aaaatattaa aaacctatgg cttcaacttg
     5101 gtattagcaa tgaaacagcc aaagaagaat gtaaaaaatt agatataaat tttatacaaa
     5161 atcgttgcat tatgctagaa tatccgtatt ttaaaacaaa ggaagaatag tgttagagct
     5221 taataaaatt tacaaagcaa aacaacaaat ttcagggttt gtaaacaaaa ctcctttcat
     5281 atactcttct tttttaagtg atatttgtca aagtgagatt tatcttaaaa atgaaaattt
     5341 acaaattaca ggtgcttata aaattcgtgg agcttataat aaaatagcca atcttagcgc
     5401 tgaacaaaaa caacacggag tcattgcggc aagtgcagga aaccatgctc aaggcgtggc
     5461 cattagtgca aaaaaatttg gcattaaagc agttattgta atgccagaat ccactccgct
     5521 cttaaaagtt tctgctacaa aagccttagg agcagaggtg atactcaaag gggacaattt
     5581 tgatgaagct tatgtctttg caacctctta tgctaaagaa aataatctta gttttatcca
     5641 tccttttgaa gatgaatttg taatggcagg acaaggaact ttgatgcttg aaatgcttga
     5701 tgaaataagc gatcttgata tgattatcgc acctgttgga ggtggaggac ttataagtgg
     5761 tatcgcaagt gcagctaaac aaatcaatcc aaacattaaa atcattggag ttggagccaa
     5821 aggagctcct gcaatgtatg aaagttttca tgccaaaaaa atcaaaaatg caaaaagtgt
     5881 acgcactata gccgatggta ttgctgtgcg tgatgcaaat cctattaatt ttaatattat
     5941 tttagaatgc gtagatgatt ttatccaagt tgatgatgaa gaaatcgcta atgcggtatt
     6001 gtttttactt gaaaaacata aaatcatagt tgaaggcgca ggagctgcga gtgtagccac
     6061 catacttcat caaaaaataa atacacaaaa tcataaaaaa attggcgtag ttttaagcgg
     6121 aggcaatatc gatgcacaaa tgctaaatat catcatagaa aaaggtttat ttaaatctta
     6181 cagaaaaatg caaattcatg ttactttagt agataaacct ggggcattat tacaccttac
     6241 agacagctta aaaatagcca atgcaaatat agtaaaaatc gactatgata gattttctac
     6301 caagcttgat tatggcgatg cgatgatttc aattacccta gaaaccaaag gtaaagaaca
     6361 tcaagaagaa ataagaaaaa ttttaaccca aaaggctttt aatttctatg aaagttttta
     6421 ataacatata cggcttaaat aaagcccatt tggcggtgct aaaaagtgat tgtattgctt
     6481 tttagcctca atctgttctt tgagttcttt ttcactcatt tttccttcta aaacttttaa
     6541 aacacttgcc acacttaatc taatttgccc tcttaaaaaa ccattagctt taaaatgaaa
     6601 aatgctaaaa tctttataag cataagctct agcaataaaa atttctctta aagtcgtttt
     6661 attatcccct ccacttttgc aaaaaaactt taaatccttt tttcctacaa aaaaacccaa
     6721 aagttcatta gctttaccta ggtcaaattt aggataaaaa tgtacataag aagccataaa
     6781 aggactataa gaagcgtgag aaaatatata gcggtattct ctacttttta catcaaatct
     6841 tacttcaaaa tcatctttta ctttttcaat ttttttgata tggataaaag gatgagaaaa
     6901 tttattaagt tgtttttgaa gatattctaa atttgtaaaa taatctccac actccacact
     6961 agctacagca tagcttgcat gtactccttt atctgtacga gaagccatca aaagaggtga
     7021 aaaaataccc aaatgcgata aggccccact taaagcatct tgaacacctt ttttatgagg
     7081 ctgagtagca gaacctaaaa aagcagagcc atcataagaa aatataattt ttattttcat
     7141 caatatcgac tcaaaatcat tttcttaaaa caataagccg aaacaaataa acttaaagaa
     7201 aaaattccaa gacaagccaa aattggaggt tgagaaaaag aacttaaaag tccaaaatat
     7261 atagcaatca ctccaaacat acctaaatac acatagcctt tttcatagcg ataagtaacc
     7321 aaaccaaaac aaagcgcaaa aagcgtacta gcaagtggaa acaaggctat agttgtataa
     7381 atcacaaatt ctcttgctct ttgtggattt tcgtttaaat cattccagta ttcataaaat
     7441 ttctttgttt gaagattgtc tgtattaaac tgagtattta ctactaaagt gtcaaattct
     7501 ccactaaaaa tactttgacc ttgctcaaaa ttatacattt tgccttgatt caagctaaaa
     7561 gcaaagctat catcttttct ttgcacatgc gcttctttgg ctatgataag ttgttcttta
     7621 tcatctgctt tatgtttagg gcgatacata attatgtttt catacttatc actatcttgt
     7681 ttttctataa aaatcatcca gtctaaaaat ttttgtccaa attctcctgt tttgtagtta
     7741 aatttcactt gagtgctttt atagtttaca aagttatcct gaagttcaaa tactataggt
     7801 atcattacca aagccacaac aagcataaaa gcactaatca agcttgcaat tttaaggaaa
     7861 aattttgcca aaatcattgg tgaaaatccc aaagtaaaaa gtactatgct ttcattttcc
     7921 ttagaaagcc taaacaaagc caaagttaaa gaaataaaaa aagatatagg caaggtaaaa
     7981 attaaaattc taggcaacat aaatccataa agctttaaaa gatccaaaaa actaatctct
     8041 atacttgaag taagttttgc aagttgaata aaaaacacca tagatacaat agcaaaaagt
     8101 acgaaaaata tagacaaatt cgtacttaaa aattgattta aaacatatct taaactaagc
     8161 ttcattagaa taatcctaag tttttataaa ataaaactgc cacaaaagcg atatttaaaa
     8221 agggtatcat agcaagttct tgctctttta ttgctttaat tttaaaaaaa ataaaaaaag
     8281 gcaaagttaa aatagaagct ataagtaata ctaaaaatcc atactcaaaa cctaaaattc
     8341 cacctataca agacataatg ataatatcag catcgcccaa attttctaaa atttcatctt
     8401 tttttcggaa attcattaga aaaaaaacca aactttttaa taaaaaaaca aatcctccaa
     8461 aactaaaagc atttagtaaa aaacctccgc taaactcttt aaaaatcaaa aaatgtaaaa
     8521 tttcactttc cctaaaggtg taaaaaaaag caaataaaaa agcgctccaa agtaaaattt
     8581 gtggtacggc tttgagttta atatcaatta aagaaagtaa gaaaagatta aataaaaata
     8641 gagataaaaa taaaaaatca taaaaatttt gacttaaaga ataaaccaaa ataagcaaaa
     8701 ttatgcctaa aatttcattg attaacaaag aaataggcaa atgacatttg caagtttgac
     8761 attttgcctt taaaaa
//
LOCUS       DARGED010000067         8547 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.067, whole genome shotgun sequence.
ACCESSION   DARGED010000067 DARGED010000000
VERSION     DARGED010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8547
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.067"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1224
                     /gene="murJ"
                     /locus_tag="SFZ84_001167"
     CDS             <1..1224
                     /gene="murJ"
                     /locus_tag="SFZ84_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG8203286.1"
                     /translation="GAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADTIAL
                     AAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKNAPQ
                     NTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKFKKAKAKLQGFYGNFFHGV
                     LGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKILKHL
                     KSGQENLALKFMQRALALLSILLIASSIVGSVFALEISKLLFERGNFTHEDSVITAYV
                     LIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDESLK
                     VIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIKPYI
                     LSFFIGIFTSFKGVF"
     gene            1224..2612
                     /locus_tag="SFZ84_001168"
     CDS             1224..2612
                     /locus_tag="SFZ84_001168"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG8203287.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            2605..4347
                     /locus_tag="SFZ84_001169"
     CDS             2605..4347
                     /locus_tag="SFZ84_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8203288.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANACEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            4379..5437
                     /locus_tag="SFZ84_001170"
     CDS             4379..5437
                     /locus_tag="SFZ84_001170"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG8203289.1"
                     /translation="MAYEMIKPLLFKLNPEHAHALVEYSLRALSASFPGALSFLAYKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKNLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            5434..6684
                     /locus_tag="SFZ84_001171"
     CDS             5434..6684
                     /locus_tag="SFZ84_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8203290.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMENLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTM
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            6677..7573
                     /locus_tag="SFZ84_001172"
     CDS             6677..7573
                     /locus_tag="SFZ84_001172"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG8203291.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            7573..8352
                     /locus_tag="SFZ84_001173"
     CDS             7573..8352
                     /locus_tag="SFZ84_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG8203292.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNAVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(8393..>8547)
                     /locus_tag="SFZ84_001174"
     CDS             complement(8393..>8547)
                     /locus_tag="SFZ84_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203293.1"
                     /translation="LSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLG
                     WKLKLD"
BASE COUNT         2972 a          995 c         1607 g         2973 t
ORIGIN      
        1 ggagcttttt gtgttagtgt aatgatgcaa tttagcctta tagttttttt attttgtctt
       61 ttggtaagtt ttttctcctc tttttttact aagctttttg cttttgggtt taacgcagat
      121 actatagctt tagcggctcc tttggtggcg attaattttt ggtatttgtt ttttattttt
      181 ttagttactt ttttaggagc tattttaaat tatagacaaa aatttttcat tacctctttt
      241 tctgcggcat tatttaactt aagtattgtt atagctgctt tttttgtgga taaaaatgca
      301 ccgcaaaata cactttatta tttttcttat gcaacggttt taagtggggt ggcacagctt
      361 attttacatt tgcttgtttt aaaaaacaat cctgtaatcc gtgctatggc tttaagtata
      421 aaatttaaaa aagccaaggc gaaattacaa ggtttttatg gcaatttttt tcatggagtt
      481 ttaggttctt ctgcgactca atttagctca ttgcttgata caactatagc tagtttttta
      541 atgagcggga gtatttctta tctttattat gcaaatcgtg tcttccaact tccccttgca
      601 ctttttgcta tcgctctaac tcaagtttct tttccaaaaa ttttaaaaca tttaaaaagt
      661 ggtcaagaaa atttagcctt aaaatttatg caaagagcat tagcgctttt aagcattttg
      721 cttattgctt ctagtattgt aggttctgtg tttgctttgg aaatttcaaa gcttttattt
      781 gaaagaggaa atttcactca cgaagatagt gtgattacgg cttatgtttt gattgcttat
      841 cttatagggc ttttaccttt tggtttgcaa aagctttttt ctttgtggct ttatgcaaaa
      901 tttaaacaaa aaacagcagc ttggatcgcg gtaaaatctt taattatcag tgctttatgt
      961 tctatggctt ttatattttt gattaaagat gaaagtttaa aggttattgc agtagcactt
     1021 tcaagctcta ttagtgcttt ttatttgctt ggagctaata tcaaagaatt tggttttaag
     1081 aaattttttg ctttaatatc tattaaaatt tgcttattgg ttatagttgc tttgattgtt
     1141 tttacgatct tacttatttt gattaaacct tatattttaa gtttttttat aggaattttt
     1201 acaagtttta aaggagtttt ttaatgagat tattagatag tgtaacaaaa gagaaaataa
     1261 aacttgataa aaaagatatt agtatttatt tatgcggacc tacggtttat gatgatgcac
     1321 atttaggaca tgcaagaagt agtgtttgtt ttgatctttt gcgtagggtt ttacttgctc
     1381 aaggcaatag ggtaaaattt gctagaaatt atacagatat tgatgataag attttgaaaa
     1441 aaatggctca aagtggtcaa actttagagg aaattacgga attttatatc aaaagttatg
     1501 aagaggatat gagggtttta aatgtattag atcctgattt taaacctcgt gcaacgcatt
     1561 atataacagc tatgcttgat ttgattaaaa agcttgctaa ggatgggttt gtttatactc
     1621 tagaagatgg aatttatttt gatacaagta aagatgaaaa atatttaagc ctatcaaatc
     1681 gcaatttaga agaaaatatc tctcgtctaa gtaatgaagt gcaaaaaaga aatgaaagcg
     1741 attttgtgct ttggaaattt gatgaaaatt tttacgaaag tgaatttggc aaagggcgtc
     1801 caggttggca tactgaatgt gttgctatga ttgattctat ttttgaaaat actcttgata
     1861 tacatgctgg agggatagat ttgctttttc ctcatcatga aaatgaagct gcgcaatgtc
     1921 gttgtggatg taagagaaaa ttagcaaata tttggcttca caatggtttt gtaaaaatcg
     1981 atggcgaaaa aatgagtaaa agtttaaata atagtttttt tataaaagat gctttaaaag
     2041 aatttatggg cgaagcttta agattttatc ttttgagttc tcattataga tctcatttta
     2101 attattcttt atcggattta gaaaatgcta aaaaacgttt agataaattt tatcgcctta
     2161 aaaaaagatt ggatttaggt gaaatttctg attttgatgt tttaaatgat attgaaataa
     2221 aaagcgaaat tgctaagcaa attttagaga ttttaaatga tgatttaaat gtttctaaag
     2281 ccttggctct tttggatgat tttatcagta gtgcaaattt agagttggat aaagaaagca
     2341 aaaataaaat tttaaaacaa aatatcaaag aagctttaag tgagctagct aaaatttttg
     2401 gctttggttt tatggataca actttatatt ttcaatgggg tgtaagcaaa gaagaacgag
     2461 aagagattga aaagttaatt ttagaaagaa ctgaggctaa gaaaaacaaa gattttaata
     2521 cagctgatgc aataagagag caattaaata gtaaaaaaat cactctttta gatactccaa
     2581 atggaacaat ttgggagaaa ataaatgcat aatgagatga atttaaaaga ggttttaata
     2641 cgctttaagc ccttttataa aagatattgg aagcaatttg ctatagctat ttttggtatg
     2701 attttagcaa gcggaggaac tgctggaagt ttttatgctt tagagcctat tttaaattat
     2761 attttcgttg aaaaaaatga agctttactt tatacagtgc cttttttgct agtattgatg
     2821 tattttttta aaaatcttgg aacttattta caaagttttt atgtttcttt tataggaaca
     2881 gatatgttaa gagtattgcg tgctagggtt ttaaaaaatg ttttacgctt ggatatggat
     2941 ttttttaaac gctatagaag cggagagctt gtaagtcgtt gtactaatga tattaatgcg
     3001 cttcaaagca tagtatcaaa cattattcct gattttttta gagagctttt aactgctata
     3061 ggactgcttg cggtagtctt gtatcaaagt cctactttgg ctttttttgc tttagtgatt
     3121 ttgcctttag ctatttttcc tttggtatgg tttgctaaaa aacttaaaaa atatgcaaga
     3181 aatatacaag aaacaaattc ggatttactt tcttatttgg gtgaaatttt ttcaaatatt
     3241 gaattgatca aagctaatga taatgaaaaa aaagaaagtg ataaatttgc taagcataat
     3301 gatactttat gtaaattaaa cctaaaatcc gcacgtattg atgcacttac aagtccttta
     3361 atggatatga tgggttctgt tggggttgct gtggtgatta ttgtaggagg tagagaggtt
     3421 atcaatggtt ctatgagtgt gggaagtttt atcagttttg tttcagcact ttttgcgata
     3481 tatactcctt taaagcgtct ttcgtcttta tatggaaaac ttcaaggtgc tgttgcggca
     3541 agtgaaagaa ctttttattt attggattta gaacctcaaa ttaaaggtgg aagcaaagaa
     3601 ttaaaaaaca ttgaaaaaat tagctttgaa aatgttgaat ttgcttatga aaacccgcat
     3661 aaaagtgttt taaaaggcgt aaattttgat tttgttaaag ggcaaatgct tgctcttgta
     3721 gggacaagtg ggggtggcaa atcttctatt attaatcttt tgatgtattt ttatgaaaag
     3781 caaaaaggta aaattttact caatcaagaa gatattagca cttttaccat agaaagctta
     3841 catgctaaaa taggacttgt aacgcaaaat atttatcttt ttaatgatag ttttgctgca
     3901 aatattgctt atagcgaaga gttagaagaa gaaaaagtca tccaagcttt aaaattggcc
     3961 aatgcttgtg aatttgttaa agaaatgggc gggatttggg ctgaagtgaa agaacatggt
     4021 aaaaacttaa gtggaggaca aaaacaaaga atagcaatcg ctagagcttt atataaaaat
     4081 cctgatgtgc ttatttttga tgaagcaact tcagctttgg ataatgaaag tgaaaaagca
     4141 atagttaaaa ctatagaaaa tttaaaacaa gatagattga ttttagtggt tgcacatcgt
     4201 ttaagcacta tagaaaatgc agataaaata gtagtattgg ataagggcaa ggtattggca
     4261 ataggtaaag atgaagagct tttgcaaact tgttctttgt atcaaaaatt taaaagcaaa
     4321 gaaaaaacaa agcctagctt tagttaattt tagttagaat ttcaaaaagg attaaaaaat
     4381 ggcttatgaa atgataaaac ctttactttt taagttaaac cctgagcatg cacatgcttt
     4441 ggttgaatat agcttaaggg ctttaagtgc tagttttcca ggggctttaa gttttttagc
     4501 gtataaatat atagttgatg atgagagttt aaggcaaaat ttacttggac ttgattttaa
     4561 taaccctgtg ggtttagcag gaggctttga taaaaatgcc actatgataa gacctttgag
     4621 tgctttagga tttggctttt tagaagtggg aacttttact ccaaaacctc aagaaggcaa
     4681 tgaaaagcca cgcctattta gacttgtaaa acaagaaagt atacaaaatg ctatgggttt
     4741 taacaacgaa ggtgctgaaa agattgcttt aaggcttgca aaaacttatc cttttgtttt
     4801 acccttagga gtaaatatag ggaaaaataa aatcactcca aatgataaag ccttggagga
     4861 ttattttact ttgtttagag attttaagaa tttatgtgat tattttatcg ttaatatctc
     4921 atctcctaat actaaaaatt taagagagtt acaaaatgat gattttttaa ataccttgct
     4981 tgaagaagcc aaaaaaatca cttctaagcc tattttgata aaaattgctc ctgatatgaa
     5041 aatagatgat gctttaaatt tatgtgaaaa tgccattaaa aaaggtgcag atggatttat
     5101 attagccaat actagtgttg attatagctt gctagataat aatcgtactt ttggcggtat
     5161 tagcggaagg ctgattacgg aaaaaagtgg tatttttttc aaagaagtag ctaaaattct
     5221 ttttggcaaa accttgctta ttgcaagtgg agggattgat agtgctgata ttgcttatga
     5281 gcgtattaaa aatggggcta atttggtgca agtttataca gctttgattt ttaaaggtcc
     5341 ttctttggta aaaaatatca atcaaaatct tatagagctt ttaagaaaag atggtttttt
     5401 acacattagc gaagctgttg gggtaaattt aaaatgattg cttatgaaaa aattcaatta
     5461 aaaaacaagc ttgaagttta tgctttgcct gtaaataaaa atagcgatgt gattagcgtt
     5521 gatatttttt ataaagtggg ttcaagaaat gagatcatgg gaaaaagtgg catagctcat
     5581 atgttagaac atttaaattt taaaagtact aaaaatttaa aagctggcga atttgatgag
     5641 attgttaagg gttttggtgg tgtggataat gcaagcacag gttttgacta tactcattat
     5701 tatattaaat gtgcgaagaa aaatttagat aaagctttgg aactttttgc agaacttatg
     5761 gagaatttaa atttaaaaga tgaagaattt cagcctgaaa gagcagtggt tttagaagag
     5821 cgtagatgga gaacagataa taatcctttg ggatatcttt attttagact ttttaatcat
     5881 gcatttatgt atcatcctta tcattggact cctataggtt tttttaagga tatagaaaat
     5941 tggagcattg aagatattaa agaatttcac agtatttact atcaacctaa aaatgcgatt
     6001 ttacttgtaa gtggcgatat agaaagtaaa gaagtttttg agctttcaaa aaaacatttt
     6061 gaaaagatta aaaatactaa gactatgcct aaaattcaca caaaagagcc taagcaagat
     6121 ggagcaaaaa gaatatattt gcataaaaac tcagatactg aattattagc ccttgcttat
     6181 aaaattccaa atttcaagca caaagatata cctgctttaa atgctttatc cgagctttta
     6241 ggaagtggga aaagttcttt aatgagtgaa attttgattg ataaattaaa tttaatcaat
     6301 gattattatg cttatgttaa tgattgtata gatgaaaatt tatttatttt tatttgtaac
     6361 tgtaatccca atgttaatgc agaaaaagta gaaaaagaac ttttaaaaat cattgataaa
     6421 cttaaaatgg gtaaaatttc tcaaaaagat ttgcaaagag tgaaaaataa tgtcaaaagt
     6481 gattttattt tctcacttaa caatgctagt gcagtggcaa atatttatgg ttcatatcta
     6541 gcaagaggag atatcaatcc tttgttaaat tatgagaaag atatacaaaa tttggaatta
     6601 aaagatttga tttcttgtgc taaaaaatat tttattcaag aaaattcaac tacggtaatt
     6661 ctaagaaagg attcaaatgg ataaaaatat tatcattggg gcgatgactg ctcttattac
     6721 accgtttaaa aatggaaaag ttgatgagca aagttatgca agattgatta aaagacaaat
     6781 agaaaatggc attgatgcag tagttccagt aggaacaaca ggagagagcg caactttaac
     6841 ccatgaagaa catagaactt gcatagaaat agccgttgag acttgcaaag gaactaaagt
     6901 taaggtttta gcaggtgcgg gaagtaatgc aactcatgag gcagtgggtt tggctaaatt
     6961 tgctaaagag catggtgctg atgggatttt aagtgtggca ccgtattata ataaacctac
     7021 gcaacaagga ctttacgagc attataaggc tattgcgcaa agtgtagata ttcctgtgct
     7081 tttatataat gttccaggaa gaacaggttg tgaaatttca acggatacta ttatcaagct
     7141 ttttagagat tgtgaaaata tttatggagt aaaagaagcg agtggaaata tcgataagtg
     7201 tgtggatttg cttgcacacg aacctagaat gatgcttatt tcaggggaag atgcgatcaa
     7261 ttatcctata ctttcaaatg gtggaaaggg agtgatttca gtaacttcaa atttattacc
     7321 cgatatgatt agcgctttaa ctcattttgc tttagatgaa aattataaag aagctaaaaa
     7381 aatcaatgat gagctttata atatcaataa aattttattt tgcgaaagta atcctattcc
     7441 tattaaaacg gctatgtatt tagctggatt gatagaaagt ttggaattta gacttcctct
     7501 ttgttctcca agtaaggaaa attttgctaa aattgaagaa gtgatgaaaa aatataagat
     7561 caaaggattt taatgaatac agaatttcaa ggaaaaactt tagtgattag cggtggaact
     7621 cgcgggatag gcaaagctat agtttatgaa tttgctaaag tgggtgcaaa tatagctttt
     7681 acttataatt ctaatgcgca aattgctgat gaaatggttc aagatttgga gaaaaattat
     7741 aaaatcaaag ctagagctta tgagtttaat atcttagaac ctgaaaccta taaagaactt
     7801 tttgaaaaaa ttgatgtgga ttttgataga gtggattatt ttatctcaaa tgctatcatt
     7861 tcaggacgtg cggttgtagg tggctatact aaatttatga agttaaaacc aaagggaatt
     7921 aataacattt ttacagccac agtaaatgct tttgttgtgg gcgcacaaga agcagctaaa
     7981 aggatggaaa aagtaggggg tggaagcatt atttctatct catctacagg aaatttagtg
     8041 tatatagaaa attattcagg tcatggtaca gcaaaagccg ctgtagaagc tatggcaaga
     8101 tatgcggcta ctgaacttgg agaaaaaaat atccgtgtaa atgccgtaag tggtgggcct
     8161 attgaaactg atgctttaag agcttttaca aattatgaag aagtaaaaca ggctactata
     8221 aatttaagcc ctttaaatcg catggggcag cctgaagatt tggctggagc atgtcttttt
     8281 ctttgttcaa gtaaggcaag ttgggtgaca ggacatactt tcatcgttga tggtggtaca
     8341 acttttaaat aaaaattaag aaaaatcaat ggatttttct taaaaatatt tttcaatcaa
     8401 gttttaattt ccaccctaaa aaaacactta ataatgcaag taaaaaaata aaatttaaag
     8461 tccaattacc aaaacctata aaacctatag ataatacgct gtaaaaaaat cctcctacag
     8521 ctgaataaat acaaatcgta cttaaag
//
LOCUS       DARGED010000068         8483 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.068, whole genome shotgun sequence.
ACCESSION   DARGED010000068 DARGED010000000
VERSION     DARGED010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8483
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.068"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1129
                     /locus_tag="SFZ84_001175"
     CDS             <1..1129
                     /locus_tag="SFZ84_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8203294.1"
                     /translation="YFQNLREEIKIMKNKGFDFTSMYVGGGTTLIDEEELLKTLELCK
                     KLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDETLKKVARYNKFGSSKE
                     LQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAPQQITTYPLMKSNLTK
                     DNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNKLNDEYVSSHHEYLGV
                     GSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKEIIKYVFLTEIFSGKI
                     EIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFGQYLFVVLMKDFYTGM
                     DLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(1126..1578)
                     /gene="hemJ"
                     /locus_tag="SFZ84_001176"
     CDS             complement(1126..1578)
                     /gene="hemJ"
                     /locus_tag="SFZ84_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG8203295.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(1562..2032)
                     /locus_tag="SFZ84_001177"
     CDS             complement(1562..2032)
                     /locus_tag="SFZ84_001177"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG8203296.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(2025..3362)
                     /locus_tag="SFZ84_001178"
     CDS             complement(2025..3362)
                     /locus_tag="SFZ84_001178"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG8203297.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(3456..4481)
                     /locus_tag="SFZ84_001179"
     CDS             complement(3456..4481)
                     /locus_tag="SFZ84_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8203298.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            4681..5289
                     /gene="plsY"
                     /locus_tag="SFZ84_001180"
     CDS             4681..5289
                     /gene="plsY"
                     /locus_tag="SFZ84_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG8203299.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            5274..5591
                     /locus_tag="SFZ84_001181"
     CDS             5274..5591
                     /locus_tag="SFZ84_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG8203300.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            5670..6341
                     /gene="hsrA"
                     /locus_tag="SFZ84_001182"
     CDS             5670..6341
                     /gene="hsrA"
                     /locus_tag="SFZ84_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG8203301.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            6454..6699
                     /locus_tag="SFZ84_001183"
     CDS             6454..6699
                     /locus_tag="SFZ84_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG8203302.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            6699..8159
                     /locus_tag="SFZ84_001184"
     CDS             6699..8159
                     /locus_tag="SFZ84_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8203303.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTYEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(8156..>8483)
                     /locus_tag="SFZ84_001185"
     CDS             complement(8156..>8483)
                     /locus_tag="SFZ84_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203304.1"
                     /translation="LILVILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVV
                     FDHANKRYTMIIGNSNVLLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQR
                     QKGKKS"
BASE COUNT         3127 a         1344 c         1142 g         2870 t
ORIGIN      
        1 atattttcaa aatcttagag aagaaattaa aatcatgaaa aataaaggtt ttgattttac
       61 ctccatgtat gtgggtggtg gtacaacact gattgatgaa gaggaattat taaaaacctt
      121 agaactttgt aaaaagttat ttaatataaa agaaatttca tgcgaaagcg atccaaatca
      181 tattgatcca aataagcttt ctatgtttaa aggtataatt gatcgtttaa gttgcgggat
      241 tcaaagtttt gatgatgaaa ctttgaaaaa agtggcaaga tataataaat ttggttcatc
      301 taaagaactt caagaaaaaa tttcaaaagc tttaggaatt ttacctattt ttagtataga
      361 tcttattttc aatcttccag gacaaaacga aaaacaactt ttaaatgact tagaaattgc
      421 taaaaattta gccccgcaac aaatcacaac ctatccttta atgaaatcaa atcttaccaa
      481 agataatatc gctaaaagtc taggagtgag cattaaagat aatgaattta cttattatca
      541 aatcatacga gaatttttta aagactatac ccaaaacaat ggttggagtt tttctttaga
      601 aaaaaacaag cttaatgacg aatatgtcag ttctcatcat gaatacctag gagtaggcag
      661 cggagctttt agctttttag atggggagct tttaatcaat gcatttaatc taaatgatta
      721 tgctaaattt atacaagaaa aacaaaatgc taatatagcc aaagcttgtt ttgataaaaa
      781 agaaattatc aaatatgtct ttttaactga aattttttca gggaaaatag aaattgataa
      841 atttaataaa actctaaatt gcaatctcga aaaagaactt ttcatagaac ttttaggact
      901 taaaacaagt ggtgccatca taaaagatca aaatgcttta atcgcaactg aatttggtca
      961 atatcttttt gtggttttaa tgaaagattt ttacacagga atggatcttg tgcgcgcagt
     1021 atttagagat gataagcgtc ttaaaaataa agattatatc gatatcatga aagaaaatat
     1081 tgatccgctt aactccgcta gtatggaatt taaagcggag acaaactaaa agggacgaac
     1141 aaccatcatt aaagcgatga taataaacat tatagttgga aattcattat aaattctaaa
     1201 atattttcca cttttagtag aagtatcatt tgctaaagct tttaaacaat aataattatg
     1261 tatatgaaaa ataatcaaaa gtgtaacaca ggtaagttta acatgcataa aacccgcacc
     1321 taccattaaa acttccttat gagcatgcaa cattaaactt cctgtgatta aagtcacaat
     1381 catggcagga gtttgtatat aataataaag ctttctttct tgaattttta caacctcgac
     1441 aaaaccttta ttgtctttat gttcagcatg atacacaaaa agacgaggta aataaaaaag
     1501 acccgccatc caagaaacaa atgccaaata atgcacccat ttaatccaaa aataataatc
     1561 attaatccat tctgtcatct tttttccttt ttttaaatat ttcttgtatt aaaatcaaag
     1621 ccacacttat atttatcatg acatctgcaa cattaaaaat agcaaaatta aaccatttat
     1681 gccaaaaaaa catatccact acacctccat gtataaaacg atccaataaa tttgaaacgc
     1741 cggcaccaag catcattcca aaagctatgc tatgagtttt taaaagtgtt ctttgccaaa
     1801 aaagataaat aaaaagcacg ccaattaaag caagatgtaa atattttaaa ttatgttcta
     1861 aaaaactcaa cattgaaaaa gctacgcctg tatttagagc ataagttaaa tctaggtatt
     1921 cactctgcca tctaaatcct gctaaagtta aggattttac ccattgatca agggcaaaaa
     1981 ccaaaacaaa ggcaccccaa aaataaaaaa taaatttaaa agttttagcc atttaaagct
     2041 ttcttaaaaa actccacaac atttttcatt tctttttcta agagcttaat atctctggct
     2101 tctagtaaaa gtcttatcaa attttctgtt ccagaatagc gaaataaggt attaatattt
     2161 ttattttcta aatctttttt taattctttt aaacctttaa ttttatctaa atcttttttt
     2221 tctgcaattt taagattggt taaaagctga ggataaggtt tgacttgacc caaaatagag
     2281 cttgcagatt ttttcttaga aagcattaaa gcactaaatt gcaaagcagc tatcaaacca
     2341 tctccagttt ttgcataatc actaaaaata atatgcccac tttgctctcc accaaaattt
     2401 ccaccattgg cttttaattt ttcaagcaca tatttatcgc ccacattaca agtatcaagt
     2461 tctataccat gtttatttaa aaattctttt aaagcaccat tactcattat agtggctaca
     2521 acacttgatt gtaatttacc ttgttcttta agataaagtg ctaaaacccc taataaacta
     2581 tctccattag ccacttcgcc tttttcatct acaaccacca aacgatctgc atcaccatca
     2641 aaagcaaagc ccacatctgc acgcaaacgc tttacctcag cagctaaatt tgcaggatgt
     2701 aaagctccac aattttcatt gatattaagt ccattaggtt tatcgctcat tactataact
     2761 tcagcaccta attccttaaa aacagtaggt gctaccttat aagctgcccc atgagccaca
     2821 tctaaaacca cacgcaaaga ctttaaagta agatcttttg gaaaagaatt tttaatagaa
     2881 acaatatacc ttcctataac atcatcaatt cttttcgctt gaccaatttt ctccatatct
     2941 accttagagg cttgtataag cttatcatca aaataaattt cttctatttt tttctctata
     3001 tcttcactga gtttgtttcc atgagcatca aaaaatttaa taccattatc ataataagga
     3061 ttgtgagaag ctgaaatcat aatccctgca tcacaacgca tatcttcagt taagaatgca
     3121 atcgcaggag ttggcatagg accaatttgt ataacattat atcctataga agtaagccct
     3181 gaaacaatag cattttctat catatagccg cttcttcttg tatcttttcc tactaagata
     3241 ttattagtaa tacttttatc tttaaaataa atacccgcag ccattgctaa acgcatagcc
     3301 aaaaaactat ctaaaaattc acccgctttt ccacgaactc catcagttcc aaaaagtttc
     3361 attgcaaacc tttctagcaa aatttaaaga caattataac aaagctaaga taaagaaatt
     3421 taaacaagct ctaaaattag agcttgtttg gaaccttata gttcaggttt aggagttttt
     3481 tcagtagaaa taggaagttg tggataaaca attgctggtt ttgttcctgt taaagatttt
     3541 aagaaagttt caatactttt tgcttcttta tcagaaattt taatgccaag ttgcacacta
     3601 cccatttcct taatagcatc ttttaaattc caaatcgcac cattatgaaa atatggagca
     3661 gtttcagcaa catttcttaa agttggagtt tttaccatgc catttgcatc acctttaaaa
     3721 tcacctaaat ttgcaaattt atatttacca gcaacttcaa acgcttgcat attgccacct
     3781 aaattcacac cattatgaca agctacacaa cctttatcta taaaaagctt taagcctttt
     3841 tgttcttctt ttgttaaagc tttttcatcg ccttctaaaa atttatcaaa acgagatgga
     3901 gtgatcaaag ttctttcaaa atttgcaatt gcatcagcaa tattgtcaaa atttacaccg
     3961 cttttaccat agattttttt aaactcactc acatattcag gcaaagatga aattttttct
     4021 actgcaagtt tagcaggagt tgccatttca ggatcagctt ggattggacc tttagcttga
     4081 tcggctaatg ttcctgcacg accatcccaa aattgagtat tatttaaaac tgcattataa
     4141 actgttggtg aatttaaatg atgaggattt gctgtccatt tatgacctat tgcagtactg
     4201 attccatctg ttccaccaag tcctacatta tgacaggtat tacaagaaat gataccactt
     4261 tttgaaagac gtggttcaaa atagagcttt ttgccaagct ctgctttttc aagagtaaat
     4321 tcactagcct ttactccatt ttgttttaaa atttcatcaa cgcctttttg atcttttggt
     4381 aaggcaacaa gacctgaatt tttagcttca tctataagac ttgcagcatt taagcttgaa
     4441 aaagcaacta aggatgcgat tagcaatgat tttactttca tttataaact cctattaaag
     4501 ataaattaaa ataaaataat aatcatttag agcttaaata aaaataaata ttattaaaaa
     4561 atatttacaa ttaattaata ctatttttat cttaaaaatt attttttgtt tatttatttt
     4621 cataagatat aatttttagt tataaatctt aaaattttaa gatgatttga aaaggatatt
     4681 atggaaaatt taataattta cgcttttata tatcttttag gttcaatccc ttttgggcta
     4741 atcctagcta aattttttgc taaaactgat atcaaaaaag aaggttcaaa aagtatagga
     4801 gcaaccaatg ttttaagagt agtaaaagaa aaaaatccca aactagcaaa aaaacttgcc
     4861 attgctacaa taattttaga ttttgcaaaa gcagctattc ctttactaat cttgaaattt
     4921 cttcattatg atcaagcttt gctttggagc gtcgcagttt tggctatttt tggacactgt
     4981 ttttcaattt acttgttatt tgaaggaggg aaaggcatag caacaggagc aggcgctatg
     5041 atagttttac ttccattgga agtgcttaca gcatttattg tgtgggtagt tattggaaaa
     5101 atttttaaaa tatcttcgct agcttcttta gcagcgttac ttgcttttgt tataagttct
     5161 tttatattta attatgactt agaaattcat acacatgcac ccgttttcat tatcgctttt
     5221 attatagtat ataaacatct acctaatatt aaaagattga tttttaaaga agaatgcaaa
     5281 gtcatataaa aataaaattt cactttaagt gtattattgg tatattagat ttcgaaagaa
     5341 gaaaaaaaca aaaaattatt atcaagctta aagctaaagc aaatgaattt ttaaattatg
     5401 cagaggtaat taccaaaatt aaaacatggt ataaaaaaga agaattttac acccttgaag
     5461 agtctttaga ctttgtaagc ttaaatttaa aaaaagattt tcctaattta accaatctta
     5521 acataaaaat tttcaaaccc catataataa aaaatgctac agttggggtt aaattgaaaa
     5581 aaaaatatta attttttttt aaagatatct aaacatttac ttaagctatg atataattct
     5641 ttaaattttt cttaataagg atagaacaaa tgagaatttt agttatagaa gatgagatta
     5701 gcctaaataa aacaattata gacaatctta atgaatttgg ttatcaaact gattcttctg
     5761 aaaattttaa agatggagaa tactttatcg gcattagaca ttatgattta gttttagcaa
     5821 actggacttt acctgatgga gatggagcgg aacttgttaa cactattaag cataaatctc
     5881 caagaacttc ggttatgatt atgtcttcaa aaacagacaa agaaacagaa atcaaagctt
     5941 tgaaagctgg agctgatgat tttgttaaaa aacctttaga ttttgatatt ctactcgcaa
     6001 gaattgaagc aagactaaga cttggcggaa ccaatgttat taaaattgaa gacttagtta
     6061 ttgatccaga tgaggaaaaa attacttata aaggtcaaga tatagaactt aaaggaaaac
     6121 cttttgaagt tttaacgcac ttagcaagac attcggatca aattgtatcc aaagaacaac
     6181 ttttagatgc catctgggaa gaacctgagc tagtaactcc aaatgttatc gaagtagcta
     6241 tcaatcaaat tcgtcaaaaa atggataaac cattaaatat atctaccata gaaacagttc
     6301 gtcgtagagg ataccgtttc tgcttcccta aaaaatctta acaattttgc accttcggtg
     6361 caaaaaattt atctttattt ctatttttat attttattta agtttggtta ttgtataaac
     6421 taaaattatt ttttaaattt ttgaaaggtt atgatgtctc ttttaattac aaaagactgc
     6481 gtatgttgtg atgcttgcag agaagaatgt cctgatgaag ctatttatga aaatagtcca
     6541 atttatgtaa tagaccctga tctttgttca gagtgcgtta atgatttttc agagcctgcc
     6601 tgtattgttg cttgcccata tgaatgtatc attcctgatc ctgataatgt agaaactata
     6661 gaagaattaa aactcaaaca tagagataga gaattttaat ggcaaaaaaa acagccgttg
     6721 ttgatcttgg ctcaaactcc attagaatgg tgatttttga aaaaacttct agatatggtt
     6781 tttatacaac ttacgaatac aaacgcaaag taagacttgg agaaaatgct tataataatg
     6841 gcaaaattct ccaagaagaa gccatgcaaa gagccgaaga tgccttagct tttttcaaac
     6901 aatgcgcttt aaagcataag tgcaaaaaaa tatttatagt aggcacatca gccttaagag
     6961 atgccccaaa ttcaaaaaat ttcattaaaa gaatcaaaga taatctgtct ttaaatatac
     7021 gctgtataga tggaaaaagc gaaagttact taggtggtct tgcagctcta aatttattaa
     7081 gtccttttaa agatggaacc actttagaca taggtggtgg ttctagtgaa ttgtgtttaa
     7141 taaaaaataa tagaattatt tcttgcatat ctcttgatat tggcactgtt aggctaaaag
     7201 aattgttcta tgatactgga aaaatggatt ctttagaaga atttataaaa ccaattttag
     7261 aacaaattcc taaagaattt tgcaatcaaa accttattgc aataggtgga agcttaagag
     7321 caatatctaa ttccatcatg caaaaaaatt cctatccact gaaaaattta catgattttc
     7381 gctatatgct agatgaagaa aaagggcata ttttaaaaat ttttaattca aacttagact
     7441 ctttaatcaa ttttggcata aaaaaggatc gttttgatac cattaaagag ggtatattta
     7501 tttttttaaa gattgcggaa aaaataaaag ccaaacaagt tatcacgagt ggggttggaa
     7561 tcagagaagg agtttatttg caagatttac ttcgtcctaa aatcactttt ccaccaaatt
     7621 ttaatcctag tttaaaatgt ttacaagata aatttttaca atcaaaacaa aaaaataaaa
     7681 ctccacattt tgctctgcaa atttttacaa cccttaaaaa tcttcataaa cttaacgata
     7741 actataagca tactttacta aatgctgcta aattatgcca tattggagaa tatttaaatt
     7801 tctattttgc taatgaacac tctgctcatt ttgtactagg tggattaaat tatggatttt
     7861 cacataaaga aaaagcttta attgctagca ttattaagct taatggaaaa aaagttaacc
     7921 cttataatct tgaaccctat aaacaacttt tacccaatat tcataccatt tcatggctta
     7981 attttatttt gtgcctagct aaaactttaa gcacaaatga agataagatt gattttgctt
     8041 ttgcaaacaa tactctttat atatatcaag aaaacaaaat tcttaattta cccaaagatg
     8101 agctcaaaaa aattgcaaaa ccagctacca tagcattagc aatcaatcaa aaaatttaag
     8161 attttttacc tttttgacgc tgctctataa gattttgaat tcttttttta ttctcttcaa
     8221 aaaaagaatc aaaatttttc tctgtttttt ctgtatgttt tattatttgt tcctctggaa
     8281 tttcaacact ttctaaaagc acattggaat tacctattat cattgtataa cgtttattag
     8341 cgtgatcaaa aacaacaagt tgattatttt tatctaaaaa tctttggaaa atcatagtaa
     8401 aatctctaga aacattgtta tttttataaa ccatagtctt tttaaaccac caaagcacta
     8461 ttaacaaaat aactaaaatt agc
//
LOCUS       DARGED010000069         8437 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.069, whole genome shotgun sequence.
ACCESSION   DARGED010000069 DARGED010000000
VERSION     DARGED010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8437
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.069"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..1135)
                     /locus_tag="SFZ84_001186"
                     /pseudo
     CDS             complement(1..1135)
                     /locus_tag="SFZ84_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
     gene            1281..2354
                     /gene="ispG"
                     /locus_tag="SFZ84_001187"
                     /gene_synonym="gcpE"
     CDS             1281..2354
                     /gene="ispG"
                     /locus_tag="SFZ84_001187"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG8203305.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(2384..3082)
                     /gene="flgH"
                     /locus_tag="SFZ84_001188"
     CDS             complement(2384..3082)
                     /gene="flgH"
                     /locus_tag="SFZ84_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG8203306.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            3172..4677
                     /gene="pta"
                     /locus_tag="SFZ84_001189"
     CDS             3172..4677
                     /gene="pta"
                     /locus_tag="SFZ84_001189"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG8203307.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     KFNFEEVQKLKEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDAARLSLDLSTIQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            4691..5887
                     /locus_tag="SFZ84_001190"
     CDS             4691..5887
                     /locus_tag="SFZ84_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG8203308.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTIPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDIDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGAYFAILPKTDAIIFTGGIGENDSL
                     VRQKVCERLARLGIELDFELNKQRISGERMINHVNSKVKVLVIPTDEELEIARITEEL
                     IGKIKF"
     gene            complement(5908..>8437)
                     /locus_tag="SFZ84_001191"
     CDS             complement(5908..>8437)
                     /locus_tag="SFZ84_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8203309.1"
                     /translation="EIANEDIYYVSYKEKSKEIECYFDNYDFKILEKSKKVEKYTFYK
                     KGQIYLKNSSNSRKSTASFYTPQSIANFLIQSALKDKLNNENILKFKILDNACGSGHF
                     LVGILNAITHIVLSDFDHFTNLKELYEEEKENILNYIKDFVQDYELDESDVLKRLLLK
                     RIIYGVDLNPFSIELTKLSLWIDSFIFGTPLSFIEHHIKCGNALVGSSIIDFENLIKQ
                     NKENIFTNSITQEFEILQEVFEKLDNLQDTNEEQIKQSKQIYQNEITPKLDKLNLYLD
                     YINSLHFANKEELQILKALSQDDIQNLSQNEQAKAIISKYQKEFNFFNYELEFPEITE
                     NQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASKKKEIQDNLLAKDYIKQN
                     YEKQKAYINNLSEYYKKVYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLAYVLPSALMF
                     EDGSLTLRKEILENKTLEYFYSFENRQAIFADVDSRYKFALMLIKNTQANHTHKIKTM
                     FYKTDMNSLKNKDEILTLSLKDIKKLSPTHLALMELKDKQALKILRKCYNAFQNLSFD
                     YIDFVNELHMTNDKDLFIEEFREGLLPLYEGKMIYQFNANFSQATYFLEKAKFDERLK
                     SKELYRAKKATGKELNPKLIKYDREFFRLGYRAVASDTNERTLIASLLPKNCGFGHSM
                     FANAPKQYIVKDDEICMDIVPYEKILFVLALFNSLVVDFIIRNMVQINVSKSYLERIP
                     LPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNRHFDELKQEFSIKNEEIPKTKKAYDI
                     LRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYITLIKTI"
BASE COUNT         2844 a         1128 c         1384 g         3081 t
ORIGIN      
        1 ttctaattgc ttaaaatcat ttttatcaat atatacaccc atatcattac ataggtcgtt
       61 ttttataatt tcttgtatta tgtctatttt ttcatgattg atatgttttc tgtctaaaat
      121 tatgggaatg ctagaagttc tatcaatatt gaaattttta ttatttttag gagtattaag
      181 ataaaaggtg ttattaatat ctttagaatt tgcataaagt gtaataggaa aaagatagcg
      241 aatataacct ctaaattctt taattttaaa taaatctaat ttatctttat gggggggggg
      301 taaaattaaa atttatagca agtaaattca tggtatcgaa ggcctttgat tggcggattt
      361 cttccatatc aagatagtat acattgtctt tgttaaaata ttttaataaa taagagatga
      421 taaaaactcc ttgtcgtagt tcatttatat cgattttaat tttatgattt tgatgagtaa
      481 gatagttgat gtaataacgc caatcataag ttagattaaa ttcaggggga tagtttctta
      541 aaactttact ccaatctctt ccccagctat gctttaaaag tcctattgga tctcgaactc
      601 cgcaaataat cttagaatta aaatctaata aagatagata tttatcaaaa taaggtagat
      661 taatttctga tatattaata gcatattgag caattgtatt atcatttaga cacatgtaat
      721 taatacaata tctctctttg ctatcaggtg gtaaaaccca ggaggcaaaa caagttacat
      781 cgcaacattg attaaggtat cttaaaaatg ctgctgctcc aacgccatgt ggagaaatat
      841 agataaattt atagtgttta ggtaggggta aatttaaatc ccaagctaat tctgcgcaat
      901 gtcgactaga atctatttct ataaaattag gattgattaa aggtggataa ggatgttttg
      961 ttgataaata tctatcccta aattcgttag aattgagcca agtgcaaatt gtttcaatat
     1021 ttttcaaaac aaaggtaaaa aatttttcat tattcgaatt ttttaaagct tgtaaaagaa
     1081 tttgagctag ggttggagtt aggttatttt ttatatagag taaaagattt tgcatataac
     1141 ctcttttaat tgtatttaat ttatatataa ttcataaata tttaaatgtc atgaaattta
     1201 aatatattat caaaaataaa ctttaattaa agcaataaaa agttaaaatt tgatattaaa
     1261 atttttcaaa gagtgaagtt atggagtata aaagatttaa aaccagacaa atcaaagtag
     1321 gaaatgtttt aataggcggt gatgcaccca tttcagttca atctatgctt tttactaaaa
     1381 caagagatat agaaggttct ttagaacaaa tcaatcgtct ttattttgca ggagcaaaca
     1441 tagtgcgttt ggcgtgcttg gatatggctg atgcaagggc tttaaaagag attaaagcta
     1501 aaagtcctct acctttaatc gtagatattc attttaatca taatttggct gtatattgtg
     1561 ctgaatttat cgatggcgtg cgtataaatc ctggcaatat aggctctaaa gaaaatatta
     1621 aagaagtggt aaaagcatgt aaagaacggg gtatccctat acgcatcggt gtaaatcacg
     1681 gctccataga aaaacaattt agtgataaat ttggttatgg tgtcgatgcc atgctagaaa
     1741 gtgcgatgta taatatcaag cttttagagg atttagactt ttttgatatt aaaatttcca
     1801 tgaagacttc agatgctcaa aaaactatag aagcttatga gagattaaga ccgctttgtg
     1861 attatccttt tcacttaggg gtaactgaag caggaactaa atttcatagc actgtaaaaa
     1921 gttctatagc tttaggaaat ttacttctta aaggtatagg cgatactatg cgtgtttcta
     1981 tgacgggtga gcttgaagaa gaaattcgtg tagcgagagc aattttgcaa gatagcggag
     2041 tacaaaaaag cggagtaaat attatttcat gtccaacttg cggtaggatt caaagtgatt
     2101 tgttaagtgc gattaaaatc gtagaggaaa aaaccaagca tataaaagaa cctttaaaca
     2161 tcagtgtcat gggttgtgtg gtaaatgctt taggtgaagc taagggcgct gatgtggcta
     2221 tagcctttgg gaaaaatcaa ggacttgtca taagacatgg tgaagttgta gctaaattaa
     2281 aagaaagtga acttgtagat agatttttag ctgaagttga agatgaggtt aaaagtaggg
     2341 ctgtaaaaga ataaaagcct aaaagcaagg tttaaccttg cttttagaat ggccatatcg
     2401 cttctataac tttactaccc caaggttttc ttgtgcttct atccacttct ccttctgttt
     2461 tatatagaat tttagcatct gctatatatt tactatctat agtattgtct tgaccgatgt
     2521 cataaggacg aataacaccg cttaattgta tgatttgctt ctccccgttg attaaaagct
     2581 ctcttgaacc ttcgataaaa taattaccat ttgataaaat tttaattaca cgcgttgaaa
     2641 ttgtagtatt gaaactttca tttctgcttt gtgagcctgt tcctgtgtag ttgtttgaac
     2701 tattggtttg aaagcctata ttagaataag cattgacttt attaagagca ttagctacca
     2761 ctcctgaact tcctgttaaa gcacctccgc ctaaatttga ggtattagtt ctacttgttg
     2821 ctttattagc ttgtgtgctt tgagtggtgc tttcttgtat aacaactgta actaaatcat
     2881 ttacattcat agctttttta tctgaaaata aaggattatc ccctttgcca aaaagcgatc
     2941 ctggtgcact ttctacatta ttactttgtt ttggtgcaag ttcttctaca taagcaggtg
     3001 gtttcattga aatttgcgga tcaaccgttg cagaacaacc aaaaaatgca aacggtaaca
     3061 cataaaataa aacttttttc attttcgtcc tttaaaatat gaatttttat ttttctttgt
     3121 taaaattaga aaaagcaaag agtgttccac atttataaat tcaaggagaa aatgatggca
     3181 aatctttatt tgatgagatc tagaagtgat gagttaaata ctattattag tacaaatttg
     3241 cttaaaaatt atagcaaaat ttacaaaaat atcgcaattt attgccctgt aatatacata
     3301 catcgcgtcc ctgttttgca aggttggttg gaagaattta atatcaatca aactgtaaaa
     3361 agcgcttatg gttttacctt tagagaggca atggaggaat ttagcaaaga tcctcataat
     3421 ttttttaatg ttattttaga agaatacgaa gagttaaaac gcaaatacga ttttgtgctt
     3481 gtaaatagct tttgcgaatt tggaatactt gatggatttg atcttagtat aaaattggct
     3541 aaaaatctta atacccctat cgctgctatt attaacgatg aagataaact tatagctcaa
     3601 aaatatttcg atcatgccct agatggtcgt aattatgttt tgattaatga aaaatttaat
     3661 tttgaagaag tgcaaaagct taaagagtat gattttataa ctccgcatcg ttttaaatat
     3721 gaattgatta aacaaagcgt aaaaaataaa aaaactgttg ttttgccaga aagtaatgat
     3781 gagagaattt taaaagctgc tgaaatttta ttaaaaagta aagttgttga tcttatttta
     3841 ttaggtgatg aggaaaaaat caaacaagat gccgctagat taagtcttga tttaagtact
     3901 atacaaatta tgaatccact taattcagaa tataatcaag aatttacttc tattctttat
     3961 gaagcaagaa aatctaaagg catgagttta gaagaggcta agatgctagt tcaggataaa
     4021 acttattttg gaactttgct tatacatact ggaaaagctg atgctatggt tagtggagca
     4081 tcaactacta cagctgaaac gattcgccca gcattacagc ttattaaaac caaagaaggt
     4141 attagttccg tttcaggaat tttctttatg gggcttgaag atcaagtttt agcttttgct
     4201 gattgtgctg taaatccaag tccaactgcc gaacagcttg caactagtgc ttatgtaagt
     4261 gctatgactg ctaaatcttt tggacttgaa ccaagaatag ctttgctttc ttattctagt
     4321 ggtgatagcg gtaaaggaga aagcgtagat cttgtaaaag aagcattaaa gattgctaaa
     4381 gaaaaatatc ctgagttgaa tatagatggt cctatgcagt ttgactgcgc ttatgatcca
     4441 aaaactgcag caaagaaaat gccaaattct aagatagcag gtcatgcaaa tgtgtatatt
     4501 tttcctgatc ttaacgcagc aaatatttgt tacaaagcag ttcaaagaac tgctaatgct
     4561 ttagcaatcg gtcctatttt gcaaggtctt aaaaaacctg ttaatgattt aagtcgtgga
     4621 tgtttggtag atgatattgt agataccgta attttaagtg caatacaagc tcaatagaaa
     4681 ggaatgataa atgaaaattt tagttttaaa ttcaggttct tcatcgatta aatttaaatt
     4741 ttttgataat aaagtcgtta aagcgagtgg cttagtagag aaaattggag agcaaaattc
     4801 aaaggttgta ttaaaaaata ctttaaataa tgaaagtttt gaaagagaat taacaataaa
     4861 taatcacgaa gaaggcctta gtatagttaa tgagcttttt aaagaatcag gaattttagc
     4921 agatttaaat gcgcttgatg gctgcggtca tcgtatagtt catgggggaa gaaatttaag
     4981 cgagcattgt ttagtggatg attatgttct taaagagata gatagggtta gtatttttgc
     5041 tcctttgcat aatcctgcgc atttagcagg tataaaaaca atgatcaaag ctgcacctag
     5101 tgttgctaat gcagctattt ttgatacagc ttttcatcgc actatacctg attttgctta
     5161 tatgtatgct ttgccttatg atttttatga taagcataat attagaagat atggttttca
     5221 tgggacttct catgcttatg ttagttctag agcggcaaaa tttcttcaaa aagatcaaaa
     5281 tgaattaaat gtcatctctg ctcatcttgg aaatggtgca agtgtatgtg ctatagaaaa
     5341 aggtaagagt atggatactt ctatgggctt tactccgctt gaaggactta ttatgggaac
     5401 gcgttgtgga gatatagatc ctgctatttt accttttatt agtcatctta agggtttaac
     5461 tatagaagaa atagatactc taatgaataa aaaaagcgga gtatatggaa tttgtggtta
     5521 taatgatttt agagatatag aaagagagat agaacaaggt aatgataaag cacgcttggc
     5581 tcttgatatg ttttgttatc gtcttgtaaa atacatagga gcttatttcg ctatattacc
     5641 aaaaaccgat gctattattt ttactggtgg tataggagaa aatgatagtt tggttcgaca
     5701 aaaagtatgc gagagattag ctcgtcttgg tatcgagtta gattttgaac ttaacaaaca
     5761 aaggatttca ggcgaaagaa tgataaatca tgtaaattct aaagttaaag tgcttgttat
     5821 tcctacagat gaagaattag aaatcgctag aatcacagaa gaacttattg gtaaaattaa
     5881 attttaaaaa ctatataaat ctttcattta tatagttttt atcaaggtta tatattcact
     5941 ttgcttttcg tttaaaacct taaaagtgct tatcatgtaa gaaaattcat catcacttaa
     6001 accataaagt tctttaacca ataaatcatt ttttgctctt aagatatcat aagctttttt
     6061 agtttttgga atttcttcat tttttatact aaattcttgt tttagctcat caaaatgacg
     6121 attttgatca ttgtaaagct gtaaaagcaa agcattttta gcgagggttt tataaatttc
     6181 attgttttga atttcttcat cacttggttg aggcagggga attctttcta aataagattt
     6241 gcttacattg atttgtacca tatttcttat gataaaatca accactaaag aattaaacaa
     6301 agctaaaaca aataaaatct tttcataagg cactatatcc atgcaaattt catcatcttt
     6361 tacaatatat tgttttggtg catttgcaaa catactatgt ccaaaaccac aattttttgg
     6421 caataaagaa gctatcaaag ttctttcgtt agtgtcactt gcaacagctc tatatccaag
     6481 tctaaaaaat tctctatcgt attttatcaa tttaggattt aattctttcc cagtagcttt
     6541 tttagctcta taaagttctt tactttttaa acgctcatca aatttagcct tttctaaaaa
     6601 ataagtagct tggctaaaat ttgcattaaa ttgatatatc attttacctt catataaggg
     6661 taaaagtcct tccctaaact cttctataaa caaatcttta tcgtttgtca tatgaagttc
     6721 atttacaaaa tctatataat caaaagacaa gttttgaaaa gcattgtagc attttcttag
     6781 aatttttaaa gcctgcttgt cttttaactc cattaaagct aggtgagttg ggcttagctt
     6841 tttgatatct tttaaactta gagttaaaat ttcatctttg ttttttaatg agttcatatc
     6901 tgttttataa aacatcgttt tgattttgtg agtgtgattt gcttgtgtat tttttataag
     6961 cataagagca aatttatacc ttgaatccac atcagcaaat atagcttgtc tattttcaaa
     7021 actataaaaa tattctaaag ttttattttc taaaatttct tttcttaaag ttaagcttcc
     7081 atcttcaaac atcaaagcac taggaagtac ataagctaaa tttccatctt gttttaaaag
     7141 agaaagattt ttttctacaa aaagacgaaa taaatttcca tctccactgc ctttgtttaa
     7201 aggataaact tttttataat actcgcttaa attatttata tatgcttttt gtttttcata
     7261 attttgcttt atataatctt tcgctagcaa attgtcttga atttcttttt tcttgctagc
     7321 gattaagctt ctataatcgc ttttatattg cggaaagaaa tcactatcac taaatttagt
     7381 tttatcccaa ggtggattac ctatgatgat atcaaagcct ttaaagactt gattttctgt
     7441 gatttcagga aattctaact catagttaaa gaaattaaat tctttttgat atttgctaat
     7501 gatagctttt gcttgttcat tttggcttaa attttgtata tcatcttgac ttagggcttt
     7561 tagaatttgt aattcttctt tgttagcaaa atgaagtgag ttgatatagt ctagatataa
     7621 atttaactta tcaagttttg gtgtgatttc attttgatag atttgtttag attgtttgat
     7681 ttgttcttcg ttggtatctt gtagattatc aagcttttca aatacttctt gtaaaatttc
     7741 aaattcttga gtaatggaat ttgtgaaaat attttcttta ttttgcttta ttaaattttc
     7801 aaaatcaatt atacttgagc ctaccaaagc attgccgcat tttatgtgat gttctataaa
     7861 agaaagtggg gttccaaaga taaaactatc tatccaaagg ctaagtttag taagctctat
     7921 gctaaaaggg tttaaatcca ccccataaat aatgcgtttt agtaaaagtc gttttaaaac
     7981 atcactttca tctaactcat aatcttgcac aaaatctttt atatagttta aaatattttc
     8041 tttttcttct tcataaagtt cttttaaatt tgtaaaatga tcaaaatctg ataaaacaat
     8101 gtgtgtaata gcatttaaaa ttccaactaa aaaatgcccg ctaccgcaag cattgtctag
     8161 tattttaaat ttcaaaatgt tttcattgtt tagtttgtct tttaaagcac tttggattaa
     8221 aaaattagct atggattgag gtgtataaaa gcttgctgtt gattttcttg aattactaga
     8281 atttttaaga taaatttgtc cttttttgta aaaggtgtat ttttctactt tttttgattt
     8341 ttctaaaatt ttaaaatcat aattatcaaa ataacattct atttcttttg atttttcttt
     8401 atagcttaca tagtaaatat cttcatttgc tatttca
//
LOCUS       DARGED010000070         8399 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.070, whole genome shotgun sequence.
ACCESSION   DARGED010000070 DARGED010000000
VERSION     DARGED010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8399
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.070"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1898
                     /locus_tag="SFZ84_001192"
     CDS             <1..1898
                     /locus_tag="SFZ84_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG8203310.1"
                     /translation="AKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLITELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDSLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCTLKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKESIYTLFKEN
                     IIRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFNGGFLNIHSQERGFLE
                     SKEQILSVKKESIQALQKFEKISPQEVQSEERLDSKELYFGNAFHFFMQNLKLPKSEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEVLLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLVLKDEEAFIIDYKTGLAMQDKHKEQVRTYKIAIGEILKKDKVRAFIVYCLEN
                     EIQILEI"
     gene            1982..2407
                     /gene="rplM"
                     /locus_tag="SFZ84_001193"
     CDS             1982..2407
                     /gene="rplM"
                     /locus_tag="SFZ84_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG8203311.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            2410..2799
                     /gene="rpsI"
                     /locus_tag="SFZ84_001194"
     CDS             2410..2799
                     /gene="rpsI"
                     /locus_tag="SFZ84_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG8203312.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            2925..3884
                     /gene="cadF"
                     /locus_tag="SFZ84_001195"
     CDS             2925..3884
                     /gene="cadF"
                     /locus_tag="SFZ84_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG8203313.1"
                     /translation="MKKILLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            3884..4525
                     /locus_tag="SFZ84_001196"
     CDS             3884..4525
                     /locus_tag="SFZ84_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8203314.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLSYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKTHSMVFLNAYEAVNYIARLN"
     gene            4618..8178
                     /gene="nifJ"
                     /locus_tag="SFZ84_001197"
     CDS             4618..8178
                     /gene="nifJ"
                     /locus_tag="SFZ84_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG8203315.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLSA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            8202..>8399
                     /locus_tag="SFZ84_001198"
     CDS             8202..>8399
                     /locus_tag="SFZ84_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8203316.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGD"
BASE COUNT         3026 a         1096 c         1579 g         2698 t
ORIGIN      
        1 aagctaaaaa tatatttcat aaagataaaa ataccttaaa tttccaagat gtgagtaaaa
       61 aagtttatga gctaataact agtgaattta aggatatgat ttattttcgt ttagatggtt
      121 ttatttcgca tttgcttatt gatgaatttc aagatacaag cgtgatccaa tatcaaattt
      181 tacgcccttt gattactgag cttgtttcag gagaaggagt taaaaaaaat cgcacttttt
      241 tttatgtagg agataaaaaa caaagtattt atcgctttcg taaaggaaaa aaagaattat
      301 ttgatttgtt aaaacaagaa tttagtcaaa ttaaaagtga tagtttaaat actaattatc
      361 gttctaaaga gcttttggtt gattttgtta atgaaacttt taaagaaaaa atcaaagatt
      421 ataaagagca atttgcctta gaaagcaaaa aaggcggttt tgtgcgtatt gtggaatcta
      481 aagaacaaaa ggttaaaaac caagcccaag aaattaagga aaagacttta gaaactttat
      541 ttgagcaaat taatttttta agatctaaaa atatttctta tgatgatatt tgtattttgt
      601 gttggaaaaa tagtgatgca gatatggttt tggatttttt aagagagcaa aatattcctg
      661 catttactca aagcaatgtt ttacttgaaa ataaagcaag cgtaagactt gttttagaat
      721 atgctaaata ttgtattttt ggtgatgagt tttacttggt atttttaaaa gaacttttag
      781 gttttgagcc cagaaaaatc acccttgatt tttcaaaaaa tgctatggaa aatgtacttt
      841 ttttaataaa agaattaaaa cttgatttaa atgatatagc tttaatacaa tttatcgaat
      901 atgctaaaac taaggagaat tttttaaagc ttttatttga gccttgtact ttgaaaatag
      961 taagtgaaca aaatatgggt attagtatta tgagtgtgca taaatctaag ggtttggaat
     1021 ttgatcatgt gattttactt gatagtttat ctaaaaacaa ttcaaacaat gaagacatta
     1081 tgcttgaata tgatatcaat caaggctggc aactccatat taaagataaa attcgagagc
     1141 ttactaaaga gtctatttat actcttttta aagaaaatat tataagagca aattatgaag
     1201 atgatatcaa taaactttat gtggctttta caagagctaa ggaaagtttg attatcataa
     1261 aaagaaatga agaaagtgta aatggaaatt atccaagtta ttttaatgga ggatttttaa
     1321 atatacattc tcaagagaga ggttttttag aaagcaaaga acaaatttta agtgttaaaa
     1381 aagaaagtat tcaagctttg caaaaatttg aaaaaattag cccacaagaa gttcaaagcg
     1441 aagaaaggct tgatagtaaa gagctatatt ttggaaatgc ttttcatttt tttatgcaaa
     1501 atttaaaact ccccaagagt gaaaattttc aaatacttac tcaaagatgc aagagtaaat
     1561 ttaggcattt tttagatgag agtgattttg aaaagctttt taaaagaatt gaagttttgc
     1621 tgaaaaatat tcaatttcaa aatttgattg gcgatggaaa gcttttaaaa gaacaagctt
     1681 tgagttttaa tggagaaatt aaacaattag atttgcttgt tttaaaagat gaagaagctt
     1741 tcataattga ttataaaaca ggtcttgcta tgcaagataa acataaagag caagtaagaa
     1801 cttataagat tgccattggt gaaattttga aaaaagataa agtgcgtgct tttatagttt
     1861 attgtttgga aaatgaaatt caaattttgg aaatataaac tttattttta cttaaattaa
     1921 gtaaaaatta atattatttt ttatacaatc acattttaaa tttttggcaa aggtaaaaat
     1981 tatgacaaag ataacaaagc caaacgaagt aaaacgagaa tggattgttt tagacgcaga
     2041 aggcaaacgc tttggtcgtc ttttaactga agtagcaaca attttgagag gtaaaaacaa
     2101 gccttgcttt actccaaatg ttgattgtgg tgattatgta attatcatca atgcttcaaa
     2161 agctgtattt acaggtgcta ataaagcaga agataagctt tatcatagac attcaggata
     2221 ttttggaagt gtaaaaagcg aaaaatttgg tgatttactt gaaaaaaatc ctgcaaaatt
     2281 atataaatta gcagttagag gtatgcttcc taaaacaaat ttgggcagag ctatgcttaa
     2341 aaaattaaaa atctatgcgg gtagtgagca cccacacact gcgcaaattg ctaaagaagg
     2401 aaaataatca tggcaacaac atacgcaaca ggtaagagaa aaactgctat cgcaaaggta
     2461 tgggtaaaac caggtagtgg taaaattagt gttaatggtg ttgatttaaa cacttggctt
     2521 ggtggacacg aggcgattaa gcttaaagtg gttcaacctt tacttgtgac taaacaagaa
     2581 acttcaatgg atattaaagc aactacttta ggcgggggct atagtgctca agctgaagct
     2641 ttaagacatg gaatttcaag agctttagca gctatggatg ctgattttag agccttatta
     2701 aaacctaaag gacttcttac tagagatagt agaactgttg agcgtaaaaa atatggacgc
     2761 cgcaaagcaa gaagaagccc acaattctct aaacgttaat attttttggt gggattttcc
     2821 cacctttcta caatttttta taaaactcat ccttttttct gtcatttatg atataattgc
     2881 aaaatttaaa tttttatttt ataacacaat gaaaggtttt ttctatgaaa aaaatattat
     2941 tatgtttagg tttggcaagt gttttatttg gtgctgataa caatgtaaaa tttgaaatca
     3001 ctccaacttt aaactataat tactttgaag gtaatttaga tatggataat cgttatgcac
     3061 cagggattag acttggttat cattttgacg atttttggct tgatcaatta gaatttgggt
     3121 tagagcatta ttctgatgtt aaatatacaa atacaaataa aactacagat attacaagaa
     3181 cttatttgag tgctattaaa ggtattgatg taggtgagaa attttatttc tatggtttag
     3241 caggtggagg atatgaggat ttttcaaatg ctgcttatga taataaaagc ggtggatttg
     3301 gacattatgg cgcgggtgta aaattccgcc ttagtgattc tttggcttta agacttgaaa
     3361 ctagagatca aattaatttt aatcatgcaa accataattg ggtttcaact ttaggtatta
     3421 gttttggttt tggtggcaaa aaggaaaaag ctgtagaaga agttgctgat actcgtgcaa
     3481 ctccacaagc aaaatgtcct gtagaaccaa gagaaggtgc tttgttagat gaaaatggtt
     3541 gcgaaaaaac tatttctttg gaaggtcatt ttggttttga taaaactact ataaatccaa
     3601 cttttcaaga aaaaatcaaa gaaattgcaa aagttttaga tgaaaatgaa agatatgata
     3661 ctattcttga aggacataca gataatatag gttcaagagc ttataatcaa aagctttcag
     3721 aaagacgtgc taaaagtgtt gctaatgaac ttgaaaaata tggtgtagaa aaaagtcgca
     3781 tcaaaacagt aggttatgga caagataatc ctcgctcaag caatgacact aaagaaggta
     3841 gagcggataa tagaagagtg gatgctaaat ttattttaag ataatgaata aaactatttt
     3901 atttgattta gatggcactt taattgattc tactgatgct attttaaatt ctttccaagg
     3961 agcttttaaa gcccttggat taacttctaa aaataatgaa gaaatcaaaa atctcatagg
     4021 ttatccttta gagcaaatgt ttagaatgct ttatccagat aaagtaaatt taagtaaaga
     4081 atttgtatta tcttatcgtg aaatttatgc acaaatttat ttagaacaaa ccactctttt
     4141 gcctaaagca aaagaagcat tagaacttgg aagcgaaatt gcagatcttg gtatagttac
     4201 aacaaaagga ggtaaattta ctccgatttt acttgattat ttgggagtta aaaaattctt
     4261 taaaacttta attactcttg aagatgtcac aaatccaaag ccaagttccg aacctataat
     4321 tttagcctta aaaagactca ataaaactca agaaaatgcc tatatgatag gcgatacaat
     4381 attagatatt caagctgcaa tttctgctaa tatcactcct ttggccttaa cttgtggtta
     4441 tggcaatgaa aatgaattaa aaacccattc tatggtattt ttaaacgcat atgaggctgt
     4501 taattatata gctagattaa actaatttca agttttcgtt aaacgccttt taagagaatt
     4561 tatagtaaat tgatagctaa aaaattataa aaattatcaa tataaaggaa ggtctcaatg
     4621 ggtaaaatta tgaaaactat ggacggaaat gaggctgctg catacgctgc gtatgctttt
     4681 actgaagttg ctggaattta tcctattaca cctagttctc ctatggctga ttataccgat
     4741 atgtgggcag ctgcaggaaa aaaaaatctt tttggagttc ctgtaaaaat cgtagaaatg
     4801 caaagtgaag caggagctgc aggtagtgtg catggatctt tacaagctgg ggctttgact
     4861 acaacttata cggcttctca aggattactc cttaaaattc caaatatgta taaaatagca
     4921 ggtcaattac tcccctgtgt aatccatgta gcagcgcgtt ctttggctgc tcaagctttg
     4981 tctatctttg gtgatcatca agatatttat gcagcaagac aaattggttt tgctatgctt
     5041 tgttcgcatt ctgtgcaaga aaccatggac ttagctggtg tagcacattt atctgcaatt
     5101 aagggaagag tgccattttt acattttttt gatggtttta gaacaagcca tgaaattcaa
     5161 aaagttgaag taatggatta tgcgcatttt gatagattat tagatagaga agctttgctt
     5221 gaatttagaa ataatgcttt aaatccagaa aatccaaaaa cacgtggaac agcacaaaat
     5281 gatgatattt attttcaaac tagagaagta agcaatcgtt tttacgatgc tttacctgat
     5341 gttgttaatg aatatatgca agaaatttca aaaattacag gtagagaata caaaccattt
     5401 acttattatg gtcacaaaga gccagagtgt gtgattgttg ctatgggttc tgtaactcaa
     5461 gcacttgaag aggtagtgga ctatcttaat gccaagggtg aaaaggtagg gattttaaaa
     5521 gtttatcttt atcgcccatt tagtttaaaa tatttctttg atgttatgcc aaaatcagtg
     5581 aaaaaaatcg cggttttaga tagaaccaaa gaaccaggaa gtctcggaga accactttat
     5641 cttgatgtaa aatcagcttt ctatggaaga gaaaatgctc ctgttatagt gggtggaaga
     5701 tacggacttt cttcaaagga tgttgatcct gctcaaatga tagcagtatt tgaaaatctt
     5761 aaacttgata atccaaaaga tggctttact gtaggtataa ttgatgatgt aactcatact
     5821 tcactgagta ctggagagaa aatttcactt ggagatgaaa gtacgatcga atgtttattt
     5881 tacggacttg gtgctgatgg aactgtgggc gcaaataaaa actcgattaa aatcatcgga
     5941 gataaaacgg atttttacgc tcaagcttat tttgcttatg attctaaaaa atcagggggt
     6001 tatacaagaa gccatttaag attttctaaa aaacctatcc gttcaactta tcttgtttca
     6061 actccgcatt ttatcgcttg ttcggtagcg gcttatttgg aaatttatga tgttttagca
     6121 ggaattcgca aaggaggaac tttcctttta aatagtattt ggaatgctga agaaaccata
     6181 agacaacttc cagatgcagt aaagaaaact ttagctgaaa aagaagtaaa tttttatatc
     6241 atcaatgcaa ccaaactagc tcgtgatata ggtttgggaa atcgtacaaa taccattatg
     6301 caatcagcct ttttcaaact tgcaaaaatc attccttatg aagacgcaca aaaatacatg
     6361 aaagagcttg cgtataaatc ttatagtaaa aaaggcgatg ctattgtaga aatgaattac
     6421 aaggctattg atgtgggtgc tgatggactt gtaaaagttg aagtggatcc aaattggaaa
     6481 aatttagagc ttaaagaaaa agaacaaacc aatgcctata aaggtactga atttgttgaa
     6541 aaaatcgtaa aacctatgaa tgcggctaag ggtgatgatt tacctgtttc agccttttta
     6601 ggttatgaag atggaagttt tgaacacggc acaaccgaat acgaaaaacg cggtgttggg
     6661 gttatggtac caagatggat agaggcaaat tgtatccaat gtaatcaatg tgcttcagtt
     6721 tgtccgcatg ctgttatcag gccatttttg attaatgatg aagaaatggc aaatgcacct
     6781 cgcggtgtaa aagatcatgc tttagaagct aaaggaacca aaggagaaaa attaagcttt
     6841 aaaattcaag tttctccact tgattgtaca ggctgtgagc tttgtgttca tgagtgtcct
     6901 actaaagaaa aatctttggt tatggtacca cttcaagaag agatggattt tggtgagcaa
     6961 gaaaatgcgg attatttatt taaagaaatc acatacaaag atgatatttt aaataaagaa
     7021 actacaaaag gagcacaatt tgcccaacct ttatttgaat tccatggagc ttgtcctgga
     7081 tgtggagaaa ctccttatat tactttaatt acaagattgt tcggtgaaag aatgattgtg
     7141 gctaatgcga caggttgtag ttctatttat gggggttcag ctccatcaac tccttataga
     7201 aaaagtgtga aaaatggaca cggtcctgct tggggaaatt cactttttga agacaatgct
     7261 gagtttggtt tgggtatgaa aattgcaact gaaaatacaa gacaccgcat tgaacatatc
     7321 atgaatgaaa gtatgcaaga agttccaaat gctttatcag ctctttttaa agattggatt
     7381 gcaaataaag acaatggtgc tatgtctgtg gaaattaaag ataaaatgat ccctatttta
     7441 gagcaaaata aaaatattaa agccgtacaa gatatattag agcttaaaca gtatttaagt
     7501 aaaaaatctc actggatttt tggtggtgat ggttgggctt atgatatagg ctatggcgga
     7561 cttgatcatg ttttagcaag tggagaaaat gtaaatattt tagtgcttga tacagaagtt
     7621 tattctaata caggcggtca aagttcaaaa tcttctagaa caggagctgt agcacagttt
     7681 gcagcagcag gcaaacctat acagaaaaaa gatctaggtc aaattgctat gacttatggt
     7741 tatatttttg tagcgcaagt aaactcaacg gcaaattata ctcatcttat caaagctatc
     7801 actgcagctg aggcctatga tggaccatct ttggtgattt gttattctcc ttgtatagct
     7861 catggtatta aaggtgggct gggttactca ggagagcaag gtgagcttgc tacaaaatgt
     7921 ggttattggc cactttatac ctttgatcct cgtttagaag agcaaggaaa aaatccttta
     7981 actctaacag gaaaagaacc tgattgggat ttatatgagc aatttttgat gaatgaagtg
     8041 cgttataatt cacttaaaaa agcaaatcct gaacacgctg ctgagctttt tgaacgcaat
     8101 aaaaaagacg ctcaacgtcg ctatagacag cttaagcgta tcgctatggc tgattatagc
     8161 aatgaggtcg aaagctgata aaatatattt ttagtgctac attgtgtttt agcactttgt
     8221 ttgcacaaga taattttgaa gagtatttta aacttataga taaagaaaat cgtataaatt
     8281 ttaatactct tcaaaaccca tttgtgaatc ctacttttga aaaattaaga catattaaaa
     8341 ttactgcaat tatgcttgat aaagtaaaaa tttatgatcg atggtataaa aaaggtgat
//
LOCUS       DARGED010000071         8352 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.071, whole genome shotgun sequence.
ACCESSION   DARGED010000071 DARGED010000000
VERSION     DARGED010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.071"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(42..617)
                     /locus_tag="SFZ84_001199"
     CDS             complement(42..617)
                     /locus_tag="SFZ84_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG8203317.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSKLK"
     gene            679..1986
                     /locus_tag="SFZ84_001200"
     CDS             679..1986
                     /locus_tag="SFZ84_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG8203318.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFKE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            1988..2326
                     /locus_tag="SFZ84_001201"
     CDS             1988..2326
                     /locus_tag="SFZ84_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203319.1"
                     /translation="MPVSPLGNINYINQNMAYPAIQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            2335..3060
                     /locus_tag="SFZ84_001202"
     CDS             2335..3060
                     /locus_tag="SFZ84_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG8203320.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSLTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVTLL"
     gene            3057..4127
                     /locus_tag="SFZ84_001203"
     CDS             3057..4127
                     /locus_tag="SFZ84_001203"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG8203321.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            4129..5523
                     /locus_tag="SFZ84_001204"
     CDS             4129..5523
                     /locus_tag="SFZ84_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG8203322.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELKVKLFNDR
                     ILLSLKNPRKIINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            5520..6527
                     /gene="tsaD"
                     /locus_tag="SFZ84_001205"
     CDS             5520..6527
                     /gene="tsaD"
                     /locus_tag="SFZ84_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG8203323.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELEHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDANLEPLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            6528..7043
                     /locus_tag="SFZ84_001206"
     CDS             6528..7043
                     /locus_tag="SFZ84_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8203324.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRIGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            7043..8287
                     /locus_tag="SFZ84_001207"
     CDS             7043..8287
                     /locus_tag="SFZ84_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8203325.1"
                     /translation="MIVSKTYEIDSCDDVELGIKRESKLEFKLCFDDEKEIKALVFII
                     PGLGGDADENYREHLAEFVAGEYNAAVASVNYHCIGNRPQTGSSFFMDDIDKLILKTS
                     CEALNIQVNLDKLNSLEELSSILKEVDHILEEQKNQKLINPNFKLSIHLSLQPTKNEY
                     QNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLIDG
                     VIDNSSYAKFLWRLVGFGKEIDFMRYYCFGTANFFKHIFTYCSDKTFWTSNSSSNKFF
                     SIPRRMIRYILEPKHLEIQANYPKPCYISYHSFYDKEIAPPDEKLELYKYLEQFGFDA
                     ELYMIKNPDQVDGRFIKSLEHGMGMSIKTLISKELPLMLEKIKQNLKKDYKEKCISYP
                     CEDLLYQFSEKDDKISLKIDKF"
BASE COUNT         3039 a         1079 c         1447 g         2787 t
ORIGIN      
        1 ccatataaaa acacataagc ttaaaaataa agcaattttt ctcattttaa cttgctttta
       61 aatttttcat attcttcata aaaattaaga tttaaaaaag catcttcatc ttcaaattct
      121 acaaatttgg ttttaatctc agaaaataaa agtcctattt tttgttcatt tttttctaag
      181 aaatttttac aagtttgagc taaagagctg tgataaaagc cacataaggg atgtttatgc
      241 aaaggggttt ttgctatgat tattttatag ttttgttcta aaaaaggaag catttttaaa
      301 agttcatttt cacctacttt aggactatct acacttaaaa caaaaacaaa ttcattttta
      361 aaatttgaaa gtatagagta aagcgcaagc ataggagagt aaacttcaaa ttctaaagaa
      421 tcttttatca agctaaaatg gttttcaaat ttgtcttctt tcgcactcac atagacattt
      481 ttaaaaattt tagaaaattt atctacttga aattgagtta aattttgatt tttaagaatc
      541 aatttgcttt tatcttgtcc catacggcta gatttaccac cacataaaat cacgcaattt
      601 agctcattaa gctgcacaaa tttccttttt aatgtaattc taccacaaaa ttcgccaaaa
      661 tattttataa tttcttttat gaaatacaca gaacttttac aattacaaac ttttttttct
      721 cggtttaaaa aaattgattt tatcaagcgt atcaatgaca atattttgga attaagcttt
      781 gatagagaaa gatttatttt tgatcttact cgtgcaatga gtgcgattta tacagctaaa
      841 tttaatgcaa aaaattataa tgcacctttt gattttatgc ttaaaaagta ttttagcaat
      901 gcttttataa aggaagttaa agtccttgaa ggcaatcgta ttttatgttt tagtgtaaaa
      961 gctaataagg cttataaaag ctatgagagc aaaatttatt ttgaatttac gggtaaaaat
     1021 accaatgtta ttcttacaga tgaaaaagat ttgatcatag aggctttaag acacattgat
     1081 aaaagttatc gtgttgtaaa acctaatgtg attttagagt ctttaaagcc ttataaaatg
     1141 gatgaaaatt ttaaggaaat taaagacttt gcagattatt tttctcgcaa atttacaagc
     1201 atttatgaga gtaaaatcaa acaaataaaa aatttaaaac ttgcacaagt ggataaaaaa
     1261 atacaaaatt tacaagaact tttttctagt ttagatgaag aaaattcttt actcttaaaa
     1321 gctttagaat acagaaaaag ggctgatgta ttgtttgcaa atttgagtgt tttaaaagat
     1381 tatgaaaggg aatttaagct tgatgatttt gaaggcaaag agcttgaatt taagcttgaa
     1441 tttaatccta agcaaagcgc taatttatat tataaaaatg ctaaaaaatt agaacaaaaa
     1501 gctaaaaatt taaacataca aagacaaaat ttaaaagaaa agttagattt taccttgagt
     1561 ttgaaagaat tattgcttca agctaagagt gagatagagc ttgaaatttt actacctaaa
     1621 aaaaatagca aaaaaaatca agatcataaa caagaagatc ttgtggcaaa tttttatttt
     1681 aacgagttta aaatttgcgt gggtaaaaat gaaaaaggca atgaattttt acttaaaaat
     1741 gctaaaaaag atgatttgtg gcttcatgta agggatattc ctagcgcaca tactttgatt
     1801 gtatcaaaca agcaaaaaat cagcctcgat gtgatagaat ttgctgcaag gctttgtgta
     1861 agcttttcta agttaaagaa aggttcgtat tgggtcgatt atactttaaa aaattttgtt
     1921 aaggttcagc aaaaggcgtt tgtaaattat acaaatttta aaagtattaa tatcacaaag
     1981 gattaaaatg ccagttagcc ctttaggaaa tatcaattat ataaatcaga atatggctta
     2041 tccagctata caagcaagca atgagcttgc aaaagaaggt tttgcagcta cgctaaatat
     2101 ggctgaattt aatgaaaaag aaaaaacttt gaacaagctt gaaaaagtca atgagactca
     2161 tgaaatcaaa gaagagatca aagaaaaagc cgaacaagaa gaaaaaaaga aaaaacacaa
     2221 tcaagaagct aaaaccagcg atgatgagaa aaatgaagaa gatgagtcta aagatccaaa
     2281 ttttaaagac gcacaaagca ttcatcgctt agatattagt atataaggaa aaatatgttt
     2341 aatacaacta gaattatttc agctcttgtg atgatagggg ctattattat tatcgcgttg
     2401 attgatcaat tttttatcaa ttttatcgtt tttgcggttt tattgtatct atcttttagt
     2461 gaagcaaaaa aactttttgc tttagaaaat atctctatta tccctttggc tatagctttt
     2521 attttgggaa gtttatcgca taaagctttg ctttttggga ttttagcttt gttattagtc
     2581 gttggatatt tggtttataa aaaggcttcc ttaaaaccag ctcttattta tatttatcct
     2641 agtttgccta ttttagcact ttggcaagtg tatttagatc agggtatgtt tgcacttttt
     2701 tggcttatca ttatcgttgc agcttgtgat agtggggcgt attttatcgg aaaacttatg
     2761 ggtaaaactc ctttttctct aacaagtcca aacaaaacct tagaaggtgt tataggtggc
     2821 ttgatttgtg cgagtgttat tggaactatt ttgggagttt ttgtttatag tttttggctt
     2881 tctttgcttt gttcgttttt tgtagcgatt tttgcagtga ttggagattt gcttgagagt
     2941 tattttaaaa gagaagcagg tgtaaaagat agtggagatc ttatccctgg tcatgggggc
     3001 gtgctcgata ggatcgatgc ggtgatcatt gctgcttttg tgatggttac tcttttatga
     3061 tactttttgg aagcacgggc agcataggag taaacgctct taaacttgct gctttaaaaa
     3121 acattcgtat ttctgcttta gcttgtgggg ataacatcgc tcttttaaat gagcaaatcg
     3181 caaggtttaa acccaaattt gttgccataa aagattcaaa aaataagcat ttagttaaac
     3241 acgatagagt ttttataggg caagaaggtt tagagcaaat tttaacagaa tgtcaagata
     3301 agcttttact caatgccatt gtaggttttg caggacttaa aagcacttta aaggctaaag
     3361 agcttggcaa aaacatagct ttagctaaca aagaaagtct tgtagtagct gggagttttt
     3421 tgaaaggggc taaattttta cccgttgata gtgagcatgc agctttaaaa tttttactcg
     3481 aaggtaaaaa aaatatagca aaactttata tcacagcaag cggcggagct ttttataagt
     3541 ataaaatcaa agatttaaat caagtcagtg tcaaagatgc tttaaaacat cctaattgga
     3601 acatgggagc aaagatcact atagatagtg cgactatggc aaataagctt tttgagatta
     3661 tagaggctta tcatttatat gattttaaag aaattgatgc tttaatagaa ccaagatctt
     3721 tagtgcatgc aatgtgtgaa tttaaaaatg gagctagcac ggcgtatttt tcaaaagcag
     3781 atatgaaact agctatttca gatgctatat ttgaaaaaca agatacgcct attttagagg
     3841 ctgttgattt tagtaaaatg cctgctttaa aatttcatcc aatcagcaca aaaaaatatc
     3901 ctatttttaa gcttaaaaat acatttttaa aagagccaaa tttaggtgtt atcatcaatg
     3961 ctgctaatga agttggtgtt tataattttt tagaaaataa aagtggattt ttagacattg
     4021 ctaaatgcat ttttaaagct cttgatcatt ttggagtacc taaaatttca agcatagaag
     4081 aagtttttga gtatgatttt aaaacaagag agtatttaag gagttaaaat gaaatttttt
     4141 ttaacaattt tattttttat aacaagcatt tttgctttag agctagactt tagcgtagga
     4201 gaaaatggaa aaagtctaga tgataataat acagttttaa tttttggtgg aattcaaggt
     4261 gatgagcctg gtggatttca tgcggcaagt ttgcttttga gtgattataa tatcaccaag
     4321 ggtaagatta tagtggctcc aaatttagct tttgatagca ttatcaagcg ttcgcgtggg
     4381 aataatgggg atttaaaccg taaatttgca agcattagcc caaaggatcc tgattataaa
     4441 accgtacaac gcattaaaga gcttatttta cttcctgaag ttagtatggt gatcaatctt
     4501 cacgatggtt ggggttttta taaacctact tatatcgatg cgatgcaaaa tcctaagcgt
     4561 tggggaaatt caagcgtgat tgacacaagt gaaatcaatg caagcaaata ccctgatctt
     4621 gaaaatatcg ccactcaaac cgtaaatagt gtcaattctt cacttgctga tccaaagcat
     4681 gcttatcatc ttaaaaacac caaaacccaa gagcttggcg atacggaaat gcttaaagct
     4741 ttaacttatt ttgtgatttc aaatcacaaa gccgcttttg caaatgaagc aagtaaaaat
     4801 ctgcctgtaa atttaagagc ttattatcat cttttggcaa ttgaaaatta tttaaaaacc
     4861 gcaggaattg aatttagcag agattttgaa ctcactccac aaggggttga taaagccata
     4921 aaccgagagc ttaaagtaaa gctttttaat gatagaattt tactttcttt aaaaaatcca
     4981 agaaagatta tcaactatgt gccttttccg gtaaataaag agttaaatta taacacaagc
     5041 aatgaactta cggctgttat cgcagaagga aattcttttt atatccaata tggcaatcgt
     5101 tttcaaacaa gattatatcc tgagtattta gaatttagcg atgcttttaa tgaagtgact
     5161 tttcaagttg atggcaatga aaccacagtt ccttttggaa ccaaggtaaa agtaaaagag
     5221 aattttctta ttccaaagat agctaatgtg cgcgtaaata tcataggttt tgatcatgga
     5281 aaagatgaaa gtggtatttt agttcataaa aaaaatatgc aaacacaata ctctttagac
     5341 atggcaggta aaatttatag agtggaattt tatgagttaa gaggggcaaa tttgcaacaa
     5401 cttttagagg caaatatcaa tagcaagttg atcaaaaacg ctaaaaattt ggatttaaat
     5461 actcttaaaa tggcaagatc aaaagataaa ttcttaggtt ctattttagt ggaatttgaa
     5521 tgaaaaatct tatcctagct atagaaagtt cttgtgatga tagttctata gctatcattg
     5581 ataaaaatac attagaatgt aaatttcata aaaaaatttc ccaagaatta gagcatagca
     5641 tctatggggg agtggtgcct gaacttgctg caagacttca tagcgaggct ttgccaaaga
     5701 tacttaagca atgcaaagag cattttaaaa atctttgtgc catagctgtg acaaatgaac
     5761 ctgggcttag cgtttctttg ctcagtggaa tttctatggc aaaaacctta gcaagtgctc
     5821 taaatttacc cttaatccct ataaatcatc ttaaaggtca tatttatagt ctttttttgg
     5881 aagaaaaaat ttctttagat atgggaattt tacttgttag tggtgggcat actatggtgc
     5941 tttatcttaa agatgatgca aacttagagc ctttagcaag tacaaatgat gatagctttg
     6001 gagaaagttt tgataaagtg gctaaaatga tgaatttagg ttatcctggt ggggtcatca
     6061 tagaaaattt agcaaaaaac gccaaactta aaaatatctc ttttaacata cctttaaagc
     6121 attctaaaga actcgcttat agtttttcag gacttaaaaa tgcagtgcgt ttggaaattt
     6181 taaagcatga aaatttaagc gatgatataa aagcagaaat agcttatgcc tttgaaaata
     6241 cagcttgtga tcatatcatg gataaattag aaaaaatttt taatctttat aaatttaaaa
     6301 attttggcgt tgtaggagga gctagtgcaa atcttaactt gcgttcgcgt ttgcaaaatt
     6361 tatgtcaaaa atataatgca aatttaaaac tagctccttt aaaattctgc tctgataatg
     6421 ctttgatgat agcaagagct gcggttgatg cttatgaaaa aaaggaattt gtaagcatag
     6481 aagaagatat tttaagccct aaaaataaaa atttttcaag gatatagatg aaaaaagctt
     6541 ttactatatt agaacttgtt tttgtgatcg ttattttggg aattttagcc gctattgctt
     6601 tgccaaaaat gagttcaagt aaggatgaag ctgaagttag caagtcttta aacaacctta
     6661 aaactttgat caatgatata agcatttata ctttaaaaaa tgatcattta agctctataa
     6721 aaacgatgag taatgtaagc ggggttgaaa atgttgatct tagtaatttt aacggtataa
     6781 aagaagtaaa ttttcgcata ggcgatgata aagaatgctt aaaacttgtt tttataaata
     6841 aagctgattt tatactcatg ggaatttcaa gcaatgaagc aagtaaaaat gctatcatca
     6901 acgcagctaa tcaaagccat gaagatttag aaaatataga ctttacaagc tcttctagta
     6961 ataaagcttg tgtgatttta agtaagaatg aaaattttaa aaacctagcg agtaaaactt
     7021 atcttttaat agggggaatg taatgatagt gagtaaaact tatgagatcg actcttgtga
     7081 tgatgtagaa cttggtataa aaagagaatc aaagcttgaa tttaagcttt gttttgatga
     7141 tgaaaaagaa ataaaagctt tagtgtttat catccctggg cttggtggag atgcggatga
     7201 aaattaccgt gaacacttgg ctgaatttgt ggctggtgag tataatgcag ctgtagctag
     7261 tgtgaattat cattgtatag gaaatcgccc gcaaactgga tcaagctttt ttatggatga
     7321 tatagacaaa cttattttaa aaacaagttg tgaagcttta aatatacaag ttaatttaga
     7381 taagttaaat tctttagaag aattaagctc aatactcaaa gaagttgatc acatcttaga
     7441 agaacaaaaa aaccaaaaat taattaatcc aaattttaaa ttaagcattc atctaagttt
     7501 gcaaccaaca aaaaacgaat atcaaaattt tgggatcatg caagctcaag atcttttaaa
     7561 tgtcgcactt tatcttaaaa aacatgctcc ttttgatact atgggggggg gtataccagt
     7621 tattatgata ggtagttctc atggtgggta tttggcacat ttagcagcta agattgcgcc
     7681 ttggcttata gatggagtta tagataactc aagttatgct aaatttcttt ggcgtcttgt
     7741 aggatttgga aaagaaattg attttatgag atattattgt tttggaacgg ctaatttttt
     7801 taaacatatt tttacttatt gctctgataa aactttttgg acaagtaatt caagttcaaa
     7861 taagtttttt tcaataccaa ggagaatgat aagatatatc ttagaaccaa agcatcttga
     7921 aattcaagca aattatccaa aaccatgcta tataagttat cattcttttt atgataaaga
     7981 aatagctcca cctgatgaaa aattagaact ttacaaatat ttagaacaat ttgggtttga
     8041 tgcagagctt tatatgataa aaaatccaga tcaagttgat ggtagattta tcaaaagttt
     8101 agaacatggc atgggaatgt ctataaaaac tttaatttcc aaagaacttc ctttaatgtt
     8161 agaaaaaata aaacaaaatc taaaaaaaga ttataaagaa aaatgtatct cttatccttg
     8221 tgaggatttg ttgtatcaat ttagcgaaaa agatgacaaa atatcactaa aaatagataa
     8281 attttaagga aacccaatga ccatactaga aaaaaacata caagctttat taagtggggt
     8341 aaatgaaccc tt
//
LOCUS       DARGED010000072         8207 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.072, whole genome shotgun sequence.
ACCESSION   DARGED010000072 DARGED010000000
VERSION     DARGED010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8207
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.072"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            79..504
                     /gene="exbB"
                     /locus_tag="SFZ84_001208"
     CDS             79..504
                     /gene="exbB"
                     /locus_tag="SFZ84_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG8203326.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIIVGLSL
                     ALKATALGLLVAIPALMAYNALLRRVSLLSNAYKANKNA"
     gene            497..886
                     /gene="exbD"
                     /locus_tag="SFZ84_001209"
     CDS             497..886
                     /gene="exbD"
                     /locus_tag="SFZ84_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG8203327.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLIIIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            883..1432
                     /locus_tag="SFZ84_001210"
                     /pseudo
     CDS             883..1432
                     /locus_tag="SFZ84_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(1445..2314)
                     /locus_tag="SFZ84_001211"
     CDS             complement(1445..2314)
                     /locus_tag="SFZ84_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203328.1"
                     /translation="MKIDTSTSLTHFLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGKANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2318..2479)
                     /locus_tag="SFZ84_001212"
     CDS             complement(2318..2479)
                     /locus_tag="SFZ84_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203329.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKICRL
                     GLFAKCKKG"
     gene            2574..3557
                     /locus_tag="SFZ84_001213"
     CDS             2574..3557
                     /locus_tag="SFZ84_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG8203330.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSK
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3643..4731)
                     /gene="aroC"
                     /locus_tag="SFZ84_001214"
     CDS             complement(3643..4731)
                     /gene="aroC"
                     /locus_tag="SFZ84_001214"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG8203331.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLCEFGICVQSGVFGIGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4731..5405)
                     /locus_tag="SFZ84_001215"
     CDS             complement(4731..5405)
                     /locus_tag="SFZ84_001215"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG8203332.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDTLEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5392..5832)
                     /gene="rnhA"
                     /locus_tag="SFZ84_001216"
     CDS             complement(5392..5832)
                     /gene="rnhA"
                     /locus_tag="SFZ84_001216"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG8203333.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5819..6805)
                     /locus_tag="SFZ84_001217"
     CDS             complement(5819..6805)
                     /locus_tag="SFZ84_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203334.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKESDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6875..>8207
                     /locus_tag="SFZ84_001218"
     CDS             6875..>8207
                     /locus_tag="SFZ84_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG8203335.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELE"
BASE COUNT         2924 a         1412 c         1049 g         2822 t
ORIGIN      
        1 taattgatat taattataaa tttatttttt atacagtata atcttttaaa atttataagt
       61 atatttttgg agaaaaatat ggaattttta aaagattaca tcgatttaat tatcttttta
      121 attctaggaa ttatggcatt tatagctttt tggtgtgttg tagaaagaat gctatttttt
      181 agaaaaatta actttaaaaa ttatgagaat caagagcaat ttgatgatgc gattagtgaa
      241 aatttaacca ctatatatat catctattcc aatgcccctt atataggact tttaggcact
      301 gtaataggca tcatggttac attttacgaa atgggcttgg cgggcaatat agatgtcaaa
      361 tctataatcg tgggactttc tttagctctt aaagctacag ccttaggact tttggttgct
      421 attcctgctt taatggctta taatgcctta cttagaagag tttctctctt aagcaatgct
      481 tataaggcaa ataaaaatgc ttaaactacc aaaaaatgaa ggtttaaata tagtcccatt
      541 tatagacatt atgcttgttt tgcttgctat agtgcttagt atttcaacct ttattgcaca
      601 tggaaaaatt caaatctcac ttccttcaag tgaaaatgct accaatataa gcaataatga
      661 aaaaaaactt cttataatca tagacgaaaa aaatactttt tatttaaatg ataaattagc
      721 tgatttaaat gaagttcaaa atgctatttt ttcacttgat aaaaaaacca tagtagaact
      781 aaaaagcgat aaaaatgcta aatttgaaag ctttgtaaaa attatagatt ttttaaaagc
      841 caaagaacat gaaaattttc agattcttac tgagaaaaac aaatgaaaac tttattttta
      901 aatcataaat accaagcttc ttatataact tttatagtct ttataccttt actttttgtc
      961 atttttcact cgaatgactt ttttaaaatg gaaattaaaa atgaagattc tttttcttta
     1021 gcaataaaac aatttaccca aactaatcca acaaatgaga ctaaaccaac agaatccatt
     1081 atagaaccta tcaaaccaaa acctcagcca aaagttatta aaaaactcct gaaaaaatgc
     1141 aaaaaaagat aaaaaaaaca cctccacacc caataccaaa taaaacccca atagcaccaa
     1201 ctcaagaagt taaaactttt gcaaaaacaa ctgatacaaa tgtcaaacct aagatcactc
     1261 aattaacaca actttagcag atttaaaaat catcgaaagc tcaggatatg atttattaga
     1321 taaaagtgct ttagaaagca taagaaaagc ttctttaaat tttccacact ataatggaga
     1381 tttaaggatt acactaccta ttatatatga ttttaaaacc ctaagaggat aaaattataa
     1441 tttgctacac tctcttatct acaatttgtg cttcttgatt ttcaatttta ttttgaaaat
     1501 ctttacttaa attctgactt aattcttgca aagatttttg cttcagtttt tcaaattctt
     1561 caggattgct agcctcaagc tttgcctgct catcagcact taaagcactt aaaccttttt
     1621 cttgagcttt ttgaagcaaa tcttcgtctt ctttttcttt gatattattt tccttatcat
     1681 cttttttatt gattttttgc ggatctatgg ttttcatagc attagctcca ccacctgatg
     1741 cttctttaat gtcgcttaaa atttctctca tgctaggttc tttaacatca ctatcatcaa
     1801 ctttaccatc tttatttaca tctttatcaa taaaaaaatt taatttttct tctatatttg
     1861 catcatcaga tattttttca tcgcttgttt taaagcctaa attttgcata ctttgttgaa
     1921 gggtacttgt attaaaattt aattttacac tttgttgttt attatttaaa tttgaattta
     1981 aagaaccaaa attatctttt acactttcaa accaatttga aacaaattga tttgctttgc
     2041 cattaagcct tatactacca tcatttctag caacataatt cgtataagaa ccgaaatttt
     2101 tttgtaaact actataattt tcatcgctta aatttaaagc tataagttca ccttgcttat
     2161 tttcaaaaac aaccttaaca ccatcgctat ttaaactcga aagatcttgc acgggaattt
     2221 tatcttgatc ttcttttttt aatacgctaa gctctttttt atcaacatta ttagttaaaa
     2281 aatgggttaa actagtagaa gtatcgattt tcattattta tcctttttta cattttgcaa
     2341 ataaacctaa acgacatatt tttctctcat gtgaattttt taaagaatta cactttttaa
     2401 gttcctgctc gtagttagca caagaatttg caaaagcaaa agaactcaaa atgcttaaaa
     2461 ccaaaattat ttttaacact ttccaatcct tattttaaag attttttagt taaaattata
     2521 tcttttataa tcgacaaaat cttaaaaaat tttataatct cagaaaggaa tcaatgaaag
     2581 cattagctct ttttagcggt gggcttgata gtatgcttgc aatgaaactc atcactgcac
     2641 aaggcataga agttaaagct ctgaatatca acataggttt tggaagcaca agcgataaaa
     2701 gtaaaatcat gaaaaagcgt gcagcgatgg taggtgcaga ttttgaaatg atagatgtaa
     2761 gaaattccta tcttcaagaa gtgcttttta atccacaata tggctatggc aaacatttta
     2821 atccttgtat agattgtcat gcttttatgt ttaaaactgc tcttgctatg ttaaaagaag
     2881 aaaatgcaag ttttatcatc acaggagaag ttttaggaca acgccctatg agtcaaagaa
     2941 gtgatgcgat ggcaaaggtt aaaaaacttg ctcttgatga agaagattta atcttgcgtc
     3001 ctatgtgtgc aaaaaaccta cctctaacca aacctgaaag agaaggttgg gtagatagag
     3061 aaaaactcga aggtattagc ggaagaagtc gtaaaagaca acttgaactt gcagctaaat
     3121 ttggattaga agactttgaa agcccaggtg gaggttgttt gctaactctt gatagttttg
     3181 ctaaaaaaat tcgagatttc atagaatttg acaaagatat gcaggttaat gacgcacaac
     3241 ttttaaaata tggtcgtcat ttaagattac ccaatggagc taaaatgatc ataggtagaa
     3301 atgaacttga aaatactctt ttaaaaggtt taaaaactcc taaatatgaa gtaatagaac
     3361 ttggagattt aatcggagct tactctttgg tagatgaaaa aatttcagaa aaagacttag
     3421 aacttgcctt aaaaatagcc cttacctata ctaaacacga agtaggaaaa agctatgaac
     3481 ttaaatttaa aaatcaagct tatacaagta tagcttttga aaataaggct gatattaatc
     3541 aattttttat tagttaaagt ataaagtatt tagcaaaaca agcgatatag tatttgaatc
     3601 ttttcaaaat attgcaatca agcccatgaa aatgggcttt ttttatttta atccataagc
     3661 attttttaaa ttgtttaaat tcgcactcgc attcaaaagc aaacaatcag ccaaaactaa
     3721 acgcaccata gcactagcta caacacttcc tctaacacct acacaaggat catgcctacc
     3781 tttgagttca aattccaaat tattgccaaa tttatctata ctttcttgct tggcaaaaat
     3841 agaaggagta ggtttaaaat aagtttttaa aataagattt tctccatttg aaattcctcc
     3901 taaaattcct ccactatgat tgcttaaaaa cttgccatct tttaaagcat cattattata
     3961 cgatccgcgc attttgcttg cattaatacc ttcgcctatt tcaactgctt taacagcatt
     4021 aattcccatt aaagcatgag ctaatttaga gtctaactta tcataaagaa cttctccaag
     4081 tcccacaagc ataccactaa cttttgtaaa aacagcagcg cctacactat cttttgaatt
     4141 tctagcattt aaaatttcat ttttaaagtc actttctagt tttggatcaa ggcaaaaaat
     4201 ttcacttttc ttagcaaatt caaaatcaaa ttcttcttct ttcaaatttg atacaaaagt
     4261 tcctattcca aaaacaccac tttgaacaca aatgccaaat tcacacaaaa gcatcgctgc
     4321 aactgcacca ccagccactc tagcaacact ttccctagcg cttgatctac ccccacccct
     4381 atgatctctt atgccatatt tataaaaata agtaaaatcc gcatgagcag gacgaaatag
     4441 atcttttaaa ttatcataat ccttagaatg agcattttca ttaaaaacta ctatagctat
     4501 gggatgaccc gttgtatatc cttcaaaaac cccgcttaaa acctgagctt tatcgctttc
     4561 ttttcttggt gttgcaaatt tacttccgcc tttgcgttta tcaagctcat tttgcaaaaa
     4621 ttcttcatca aatttaaccc cagcaggcat tccatcaata atacatccaa cagccacacc
     4681 atgagactca ccaaaacttg taaatttcaa tctcgtacca aaggtattca ctataaagct
     4741 cctaatttct caagtgcaat ttttgctgcc atttgctgtg cttctttttt gcttcccgca
     4801 atagctcttg caagttcttt accatcaagc attaaagcga tttcaaattg ctttaaatga
     4861 tcaggaccaa aagcgcgcac tgtttcatac tgcggagttt gtccgatttt tccctgtgta
     4921 atctcttgta attttgtttt ataatctttt ataagaattt ttgcatcaat ttgagggaaa
     4981 tttttttcta taagccttaa agcaatagtt tttgcaaact cgaacccagc ttctaaatgt
     5041 atagcaccta taatggcttc taacgtatct gaaagtatag aaggcttttc ttttcctcca
     5101 ttgttttcct cagcaacact cataagaata aaatcgccca aatttaaact atttgcaatt
     5161 tttgcaaaag acttttcatt cactaaagct gctctaagct tagataaatc tccttcggca
     5221 tctttggcga atttatgaaa aaggtattca cctacaacta aatcaagcac ggcatcacct
     5281 aaaaattcca agcgttcgtt gttgtaagat tttttaaaac ttttatgggt taaagcatgt
     5341 ataagaagat ttttatcttt aaattcataa gttaaactct gctctagctt ttcaatgttt
     5401 ttcatcattt tcccttgcaa ttttcaaagc agcttcacgc gccaatgtat cacacctttc
     5461 attttccaaa tgtccattat gtgcttttac ccaaaaagcc ttaatcttat gagattttgc
     5521 cactttaata tattccttcc ataaatctat atttttttta cctttaaaat ccttttttat
     5581 ccatccttct agccattcat taatactttg aaccattagg ttagaatctg taaaaagcga
     5641 aatttcacaa ggctctttta aagccttcaa agattcaata attgccatta gctccattct
     5701 attgttagtg gtattagcct cagctccaaa accttccttt tgatactcct tataacgcaa
     5761 aatataagcc catccgccaa aacctggatt attaagacat gagccatctg tataaatttc
     5821 aatgtgtttc attgtttttc acttcataaa taattttaca agtattaaac tcataacaaa
     5881 caggacagtg ataaaaaaac aaaggcatta catttttaca ctcagaacaa cgatatgaaa
     5941 attctaaccc cgcattaaaa gaattatctt ttaaaatttt taacatttta aagttagaat
     6001 ttttaaaaac aaactggtgc gtatcatcat gctttgaaat tttacccaaa gcataaaaga
     6061 attctaaaaa atcttgattt tctaaattaa acgcttcatt ttctctataa agcaaatcac
     6121 aaatatcaaa aaaattttgc cctaaaaaca tatgatattt ttcaaaaact aaacgcccca
     6181 acataggatt atcttctatt ttaaattcta aaagtttttt ctttttttct tcatcagtaa
     6241 tattaaaagt acaaagttct aaagctttga taaaatcact ctctttttgt acatcttcat
     6301 taagctcaaa aagacattct aaaagttcta aattttcttt ataagaacga agttttaaat
     6361 aaacaatttt taaaagtttt aaggcttgta tatttcttgg acgcagtttt aaagcttgta
     6421 ataaaacttc ttttgcacgc tctaaaaatc ctgctttaaa ataaactttt gctaaagaaa
     6481 ggaaaataaa ttctctttct tgtttatctt tacatttttc aagagcaatc aaataaattt
     6541 gagttgcttt ttcaaattcc ccgcttttag taaaaatttc agccaaaaaa cttaaatttc
     6601 caaaactcaa gctactattt cttaataact ctttatgagc gttatccatt tcaaattttt
     6661 ttataaattt ttcaagcttt tgttcttcat ctttgctagc aaatattttc caaatataat
     6721 ttgcaacagc tacaacaaat actaaaatgg ttaaaattat aagccctact aaagggtctc
     6781 tgtattctac aaagaaaaaa tccatagtct cgctctaaaa attttatgcc aaattatagc
     6841 caaatctttg tataatttta acaaggtttg taaaatgata actaaagaaa gtatagaaaa
     6901 tttatcccaa agacttaata ttgttgatat tatagaaaat tatattgaag taaaaaaaca
     6961 aggctctagt tttgtatgta tctgtccttt tcatgcagat aaaaacccgt ctatgcatat
     7021 caatcctatc aaaggttttt atcattgttt tgcctgcaag gctggtggag atgcttttaa
     7081 atttgtaatg gattatgaaa aattaagttt tgctgatgca gttgaaaaag ttgcaagcct
     7141 tagtaatttt actttgagtt atacaaaaga aaaacaagaa aataaaaaag agctaaagtc
     7201 tatactacca agcttaaatg cgtattttaa agataatctc aaacaccaca aagaagtttt
     7261 aacctatctt taccagagag ctttaaatga caaagatata gccaaattcg aattaggttt
     7321 tgcaggagca agtgaagata gtataagatt attgcaaaat caaaaaattc ctttagaaga
     7381 tgctatgagt gttggagctt taaaaaaaga tgaaaataat gaattttacg caagttttat
     7441 atggcgtatc acctttccaa tctacgatca taaagactta ttggtagggt ttggagggcg
     7501 cactttaaat cccaatgtac cggcaaagta tgtaaattca ccccaaaata tactttttga
     7561 taaaagtaga attttttatg cttttaacat cgctaaagaa aatatagcca aaaaaaaaga
     7621 aataatagta tgtgaaggct acatggatgc aatagctttt cacaaagcag ggtttaacaa
     7681 tgctgtagca gttcttggaa cagcattaac cgaacatcat ctacccttaa tccgccgtta
     7741 tgatgcaaaa gtgattttat gttttgacaa tgatgaagca ggattaaaag ctgcgacacg
     7801 atctgcattt ttattaagca caaacaaaat agacggtaaa gtggcaattt tgcaaggcgg
     7861 aaaagatcct gctgagctcg tagcaaaaaa tgaaagcaca aaactccata atatactcga
     7921 tgaaggaata gagcttggtg aattttatat cagacgctta atatccactc attccataat
     7981 ttctgctctt gataaacaaa aagctttaga aactatacaa aaattcacct ttaatcttga
     8041 acctttagtg gcaaattctt acactagtct agtttcaaat ttattaaaag tggatgaaaa
     8101 atttattgtc ttatcacaaa attcaaaaaa aaccatacaa acccctttaa tttctcaaaa
     8161 taaatacaat tttcctaaag aaaaaattca cattgcagaa ttagaac
//
LOCUS       DARGED010000073         8172 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.073, whole genome shotgun sequence.
ACCESSION   DARGED010000073 DARGED010000000
VERSION     DARGED010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8172
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.073"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..901
                     /locus_tag="SFZ84_001219"
     CDS             <1..901
                     /locus_tag="SFZ84_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203336.1"
                     /translation="QFQSYEKHLLLAYEFFLKEIEILNHQILEQLKSISERISSEIFA
                     SVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAFLAMFYNSDAMSKEFKKIKNE
                     LYKSFEEIKMKLKGFINILEREILLFKAEFSNIQKDHIFQSDKNFSELRAFCNASDEY
                     FLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLSLAFFSRKINESRVLYELDSS
                     EFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTKIAKNFLEQSQILIQEKSKFLD
                     LKKAELRKRRVQILNVRESIKED"
     gene            901..1605
                     /locus_tag="SFZ84_001220"
     CDS             901..1605
                     /locus_tag="SFZ84_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG8203337.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKFYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            1741..2469
                     /locus_tag="SFZ84_001221"
     CDS             1741..2469
                     /locus_tag="SFZ84_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG8203338.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFIEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            2471..4192
                     /locus_tag="SFZ84_001222"
     CDS             2471..4192
                     /locus_tag="SFZ84_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG8203339.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSREKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            4398..5093
                     /locus_tag="SFZ84_001223"
     CDS             4398..5093
                     /locus_tag="SFZ84_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203340.1"
                     /translation="MVNFDTQYTNINYPNNNTSNKKAVLKNDDDAYYESIIKKFGDLE
                     KFKEENGYNGSPDVKEVENSLYKRYMEDRLSKDEIKILNKFGTDYLTEGVDLSALHKR
                     KVDLLKTLTSMNEFEKIWGAERAQREKQFFNELGKPLTQEDIDRFLTNKNNQKEDKEA
                     FKPIQAESKNKETYKDDNTRNELVKKLLEGKFSTSKELEILFGVKFSDDDAGEFNKIL
                     SLNSAPKSIDIKA"
     gene            complement(5199..5903)
                     /locus_tag="SFZ84_001224"
     CDS             complement(5199..5903)
                     /locus_tag="SFZ84_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203341.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANAAKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            6011..6373
                     /locus_tag="SFZ84_001225"
     CDS             6011..6373
                     /locus_tag="SFZ84_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG8203342.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            6447..7019
                     /locus_tag="SFZ84_001226"
     CDS             6447..7019
                     /locus_tag="SFZ84_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG8203343.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(7024..7980)
                     /locus_tag="SFZ84_001227"
     CDS             complement(7024..7980)
                     /locus_tag="SFZ84_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203344.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFAAYFQF
                     LFQEGTGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(8041..>8172)
                     /locus_tag="SFZ84_001228"
     CDS             complement(8041..>8172)
                     /locus_tag="SFZ84_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8203345.1"
                     /translation="KPNLYRIVMLGFKFDELLENSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT         2981 a         1012 c         1416 g         2763 t
ORIGIN      
        1 tcaatttcaa agttatgaaa agcatttact tttagcgtat gaattttttt taaaagagat
       61 tgaaatttta aatcatcaga ttttagaaca gcttaaaagc attagcgaaa gaatttctag
      121 tgaaattttt gcaagtgtta aggaaaaaga tgcttatttt tacaaagaaa gcaaaggatt
      181 tttaaagaaa gatttataca caagatatga ttataaagca ccttatattt caagtgacga
      241 tgcttttttg gcgatgtttt acaatagtga tgcaatgagt aaagagttta aaaaaatcaa
      301 aaatgaactt tataaatctt ttgaagaaat caagatgaaa ttaaaaggct ttataaacat
      361 actcgagaga gaaattttac tttttaaagc agaattttca aacatacaaa aagatcatat
      421 tttccaaagt gataaaaatt ttagtgaatt aagagctttt tgcaatgcaa gtgatgagta
      481 ctttttgaaa gattttaaag agcttttatt taaaagtatt ttagaacttg atttattttt
      541 tgaaaaatta aatcttaagg cttttacaaa ttatgaaaat gctacaaaac taagccttgc
      601 attttttagt cgtaaaatca atgaaagccg tgttctttat gagcttgata gttctgaatt
      661 tgtacttttt tatcccaaaa aaagtgaaat ttatgaaaga gttttaaatg aattaaatgt
      721 ttatgagttt gaagctttgc ttattaataa gcctattttg acaaaaattg caaaaaattt
      781 tttagaacaa agtcaaattt taatccaaga aaaaagtaaa tttttagatc ttaaaaaagc
      841 agaacttcga aaaagaagag tacagatttt aaatgttaga gaaagtataa aggaagattg
      901 atgagaatat ttttagcttt atttttattt tttaattcat tacttgcatt aagtgaatta
      961 gaagaaggtt taaaatttta tgaagcaaat aaatttgata aagcttatga aatttttaaa
     1021 agcctttgtg aaaaagatat ttctaaagct tgtttttctt tagcttttat gtacgaaagt
     1081 gctaagggta tgagtaagga tttaaatcaa gcttataaat tttatgataa agcttgcaaa
     1141 ttaggtttag caagtgcgtg ttctaatatg gctttgcttt tgcaaaatca aggttataaa
     1201 aatgaagctc ttttggcttt taataaagct tgtactttag gagaatcgtt aagttgtaat
     1261 aatatagctt tattttatga aaaagaaaaa gatggacaaa tggcctcaag tttttataaa
     1321 agatcttgtg atttaaaaaa tgcaagagct tgttatcaat tagggtcttt atatgataaa
     1381 ggagagcttg ttaaagcaag tgtaaaatct gcccttgctt tttattctaa atcttgcact
     1441 ttaggttttg gtgagtcttg ttatttgtta ggacgctata atcaactaga aaaacaagat
     1501 ttaacaaagg caaaaagata ttttggtatg gcttgtgatc aaaaacatca agaagcttgt
     1561 gcagcttata aagaacttaa ttctaaagat atagagcttt attaaaagtt ctattttcat
     1621 tactttcaaa gatattctta aataaaatta agaataacac aaaatttatc gctttttaaa
     1681 gttaaattta tattaatagg gctaatatag tcttgtttaa attattatca aggagaagta
     1741 atgcaagaca atattattga tcgcagaagc ttttttaaac tagggctttt aggtggttct
     1801 gtagtagcag ctagtactat aggtggcggt gctgttttaa aggcagcaga acttacgcat
     1861 tcgcatcaag cttcacaagg aaaatcaaat aaagttagag gtagaatgtt ttttcaaact
     1921 caaactgaat ttgatacctt aagtgcagcc tgtgaaagaa tttatcctaa agatgagcaa
     1981 ggagaaggag ctataggttt aggcgtacct tattttatcg ataatcagct agctagtgct
     2041 tatggttata atgatagaga atatatgcaa ggacctttca ttgagggtaa agctgaacaa
     2101 ggctatcaaa ctcctatgca acgcaaagat atttttttag aaggtgtgca tgctcttgaa
     2161 gaaaatgctc aaaagcgtta taaaaaatct ttttctctgc ttaaaggtgg agatcaggat
     2221 aaaattctaa gcgattttga aaaaggaaaa attcaaacta cgggttttaa atcttcttat
     2281 tttttcactc ttttaagaga tatgacagta gctggagttt tagctgatcc aatttatggc
     2341 ggaaatgata ataaaaatgg ttggagaatg atgcaatatc caggcgcaca aatgagctat
     2401 gtggataaaa ttgcaagtga tgaatttttt aacattgaac ctatgagttt agcagatatg
     2461 gagagttaaa atggctgaag tattaaaaaa agtagatgtg gtaacagttg gggcaggatg
     2521 gactggaggt atagtggctg cagagcttac taaagcaggt ttgaatgtac ttagtttaga
     2581 acgcggacat atgcaaagta ctgaaaattt taattttatc catgatgagt ggagatacgg
     2641 gattaattat ggtttgatgc aagattgctc gaaagacact gtgacttttc gccatgatcc
     2701 tagtggttta gccttgcctt atcgtaaaat gggttcgttt ttattgggta ataatgttgg
     2761 cggtgcaggg gtgcattgga atggttggac ttttaggttt atgccttatg attttgaaat
     2821 tcaaacccta agcaaacaaa gatatggtaa taaattaggt aatgattata ccttgcaaga
     2881 ttggggtgtg acttataagg atatggagcc ttattatgat agatttgaaa aaacctgtgg
     2941 ggtatcaggt gagccaaatc ctttagcgga aaaaatggga gcttttagat ccagtcctta
     3001 tccacaagaa cctcttgaaa atactaaaat gcttaaacga tttgaaagtg cagcaaaaag
     3061 ttcaaattta cacacttatc gtttgccagc ttcaaattct aaaggtggct atacaaaccc
     3121 tgatggtcaa gatttagctc cttgtcaata ctgtgcgtat tgtgagcgtt ttggttgtga
     3181 gtatggcgca aaagcaagtc ctttaaacac agtaattcca aaggctatga gcacaggtaa
     3241 atacactata cgcacttata gcaatgtaac gcaaattctt aaaaaagacg gaaaagtaac
     3301 gggggtaaaa tttgtcgata ctagaacgat gaaagagtat attcaacctg ctgatatagt
     3361 tgtgcttaca agttatatgt ttaacaatgc taagctttta atggtaagca acataggtga
     3421 gcaatacgat ccaaaaacag gtaaaggaac tttaggtaga aattattgtt atcaaatgaa
     3481 catgggtaca acagctttct ttgatgagca atttaacacc ttcatgggtt caggtgcttt
     3541 gggaactacg agtgatgatt ttaacggaga taattttgat cattctaggg aaaaattcct
     3601 tcatggagct atgatttata gcgttcagct tggaactcgc cctatacaat cagccccact
     3661 tccagcagga gctccaactt ggggtgctga atttaaaaaa gcattaaact ataatttcac
     3721 aagagctatt accgtagcag gacaaggtgc ttctttgcct cataagaata attatttaag
     3781 tcttgatcca acttataaag atgcttttgg tatgccactt ttacgcttaa cttataattt
     3841 caccgatcaa gatagagctt tgcataaatt tatcacagat aaaacagctg aggtagcaaa
     3901 aagaatgcaa ggagtaaaat caatcaaaaa aggtgcttat cttaaggatt atagcgttgt
     3961 gccttatcaa tctactcata acacaggtgg aacaaccatg ggtgcagata gagaaactag
     4021 tgtggttaat acttatttac aacactggga tgcggataat ctttttgttg taggagcagg
     4081 aaatttccaa cacaatagtg gatataatcc aactgatact gtaggagctt tggcttatcg
     4141 ctgtgctgaa ggtattttaa agtatcataa aagtggaaaa agcttagctt gataataact
     4201 tgagagtttt tgaaaactct caagattata aatttttaat tttcttccga tatagtataa
     4261 tatcaaggaa ggcaaaaatg attaatggta taaattctta tttaaactac aattatacaa
     4321 aaaggcaaat gtagtctgct cttggtggtt ggaatccaag attattttaa taaaatatca
     4381 taaaaaaagg gttttctatg gtaaattttg atactcaata tacaaatatc aattatccaa
     4441 ataataacac aagcaataaa aaagctgtgc ttaaaaatga tgatgatgct tattatgaat
     4501 ccataataaa aaaatttgga gatcttgaaa aatttaaaga agaaaatggc tataatggat
     4561 ctcctgatgt aaaagaagta gaaaactctt tatataaaag atatatggaa gatagactaa
     4621 gcaaggatga aataaaaata cttaataaat ttggcacaga ctatcttaca gaaggcgtag
     4681 atttgtccgc acttcataaa cgaaaagttg atcttttaaa aactcttaca agtatgaatg
     4741 aatttgagaa aatatggggt gctgaaaggg cacaaagaga aaaacaattc tttaatgaac
     4801 ttggtaagcc acttactcaa gaagatatag ataggttctt aactaataaa aacaatcaaa
     4861 aagaagacaa agaagctttc aaacctatac aagcagaaag taaaaacaaa gaaacttaca
     4921 aagatgataa tacaagaaac gagcttgtaa aaaaactatt agaaggtaaa tttagcacta
     4981 gtaaagaatt ggaaattctt tttggtgtga aatttagtga tgatgatgca ggagaattta
     5041 ataaaattct ttctttaaat tctgcaccaa aaagtataga tataaaagct tgaaaatgca
     5101 aaaatttaaa ttataaaaaa gaaaaaatgt taaatatctt aacatacaaa ttcaagtcat
     5161 cgtttttata aggaaatttt ttatttaaat taagaatttt aagatgcgat attgaattta
     5221 atgtcgttat tttgtgagtt ttgttgataa gttctagcaa caaaattttt aaagtcttta
     5281 tcaaaatttg aatttttatc gttgtttttt gaatctttat ctgttttttc taagctattt
     5341 tctgaatttt tgtcatcttt ttctttattt tcttcttctt tttctttggc ttcttcggct
     5401 ttaagcttca ttgcttcagc tcttgcttca aattccattt ttgcagcatt tgctgcaact
     5461 ttatagtctt gtgggctagg atcagcagga gccatagctg ctgctgcgat ttgtcttgca
     5521 ttggctatag tttcttctgg tgtgtttcct ttttgcatgc tgataggaac ttcacccgct
     5581 gtagcataca tttgattatc agggcctctt gtataagtaa aacttgcagc acctgctaag
     5641 ccgccacccg ctgcttgatg cgcagcttca tgagccttta catttctatc gatactttgg
     5701 agttcgcgaa cttgagctac ttctttttgg cttagctcta cgccattaac catttgggtt
     5761 tgttcgccat ttttttcttt atcatcttta ttttcactaa gatttttttc atctttttga
     5821 gtggaatcag attgatttgt tttatcaaaa gaaggtttgc tagagtagta atcataagag
     5881 ttataacttg aactaatttg catttatcct cctttttgtt ttttaaattt ttaggaattt
     5941 taacgcattt tgacttaaaa atttgataaa ttttgtaaaa taatcataaa tacaatttca
     6001 aaggaatgta atgatttatg aaaatgattt gatttatata gagaaagagg aggctcaagt
     6061 gccttggctt aaaattttta ctaaagaaat ttataaagaa tttagcgatt gtcctttaga
     6121 gttgcaaaag gaactttttg aaaaaatttt actttgtgaa aaggctatga tagaatttta
     6181 caaacctgaa aaaatcaata tcgcctcttt tgcaaattat gtgccaaggg tgcattttca
     6241 tgttatggca agatttaaag aagatgcgtt ttttccagag tgtatgtggg gaaaacagca
     6301 aagagaaaca ataaagcttg atttgcctaa atttgaagaa tttgtaaaat ttttaaatag
     6361 taaaattttt tgatttttat taatgatttg ttatgtttta tctaataaaa tttttatatt
     6421 gaaaattact ataaaaaagg aaaaaaatga aaaaagtttt attgagttca ttggttgcgg
     6481 tgtctttgtt aagcacaggt ttgtttgcta aagaatatac tttagataaa gcacatacag
     6541 atgtaggttt taaaatcaaa catttacaaa ttagcaatgt aaaaggaaat ttcaaagatt
     6601 attctgcggt gattgatttt gatcctgcga gtgctgaatt taaaaagctt gatgtaacta
     6661 taaaaatcgc atctgtaaat acagaaaatc aaacaagaga taatcactta caacaagatg
     6721 attttttcaa agcaaaaaaa tatcctgata tgacttttac aatgaaaaaa tatgaaaaaa
     6781 tcgataatga aaaaggcaaa atgacaggaa ctttaactat agctggagtt tctaaagata
     6841 tcgttttaga tgctgaaatc ggcggtgtag ctaaaggcaa agatggaaaa gaaaaaatag
     6901 gattttcttt aaatggaaaa atcaaacgct ctgattttaa atttgcaaca agtacttcaa
     6961 ctattacttt aagtgatgat attaatttaa atatcgaagt tgaagcgaac gaaaaataat
     7021 tttttagtct aagagtcttg ctcttagact ttgtaaattt ttatccaaat tttcttcact
     7081 ttcttgccaa atcaatttaa aatccggttt aaaattttca ttttctaaat taaattccgt
     7141 gtttttcaag gtggattcta aaaaagcaag atgatttaaa gcttgatttt tatcattaaa
     7201 aattaaaata aaatcatttt ctacgataaa aatttttgct ctaaagcgtt ttaaaatttt
     7261 tgcaatttgt tttaaaatga gtttggtata gctttctttg gtatctttta gttcattaaa
     7321 atgaagcaag gcaatgatat agttgttttt tccttttgta aagcgtgtaa ggcttttttc
     7381 attgggtagc tttgttaagg tgtcaaaaaa agctaaccta taagcgtgat ttaaaagata
     7441 aaaacaaaaa accaaacttg caaattcaaa atatcttatt cctgttcctt cttggaataa
     7501 aaactgaaaa tatgcagcaa aaaatgcgat aagaagataa tattctttag ttttaaaagt
     7561 tttgataaaa atgagtatta agccgactaa aaaaaataaa aatcctaatt cactcacagg
     7621 tttaaaaaaa tttaatgtaa taaaatggaa ttctaaacca gcgctattga aagtagtatt
     7681 tctaggtaaa atgatgctta aaacgcctat aaaaataagg gttgtaattg aggcgatatt
     7741 ttttttattt aaaattaaaa catgatgttt tccaaggcaa aatagagtaa aaatcatagg
     7801 taaaaacaaa gccacaaata aattagcttg aaaaaaactt gtataaaaat aaggcagctt
     7861 agctcctagt aatactaaag tcaaaaagaa aatttttgaa tttttaaagt aaaaggatag
     7921 cacaagagct gaaatttcaa aaataaaact caatgatatt aaaaaatcta ataaaaacat
     7981 ttcaaatcct tgattttaat aaaagtgata attgtataga aaaaagctta aaagcgggtt
     8041 ttatttaaat ttagcaattt catcttgtat ggtttgttct atatgaagca attcttcatg
     8101 agtttttttg ctattttcta aaagttcatc aaatttaaag ccaagcataa caatacgata
     8161 taaattgggt tt
//
LOCUS       DARGED010000074         8055 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.074, whole genome shotgun sequence.
ACCESSION   DARGED010000074 DARGED010000000
VERSION     DARGED010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8055
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.074"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            7..744
                     /locus_tag="SFZ84_001229"
     CDS             7..744
                     /locus_tag="SFZ84_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8203346.1"
                     /translation="MSLSFGADKTIIIGVTPTPYAEILNFSKPLFQEKGWKLIVKEFN
                     DYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLVPMAIYSNSIKDIK
                     DIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDISKNPKKLKFIELKA
                     AQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVLATRKGEETSQKSL
                     VIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            828..1490
                     /gene="flgA"
                     /locus_tag="SFZ84_001230"
     CDS             828..1490
                     /gene="flgA"
                     /locus_tag="SFZ84_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG8203347.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            1487..2050
                     /locus_tag="SFZ84_001231"
     CDS             1487..2050
                     /locus_tag="SFZ84_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG8203348.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            2090..2566
                     /gene="coaD"
                     /locus_tag="SFZ84_001232"
     CDS             2090..2566
                     /gene="coaD"
                     /locus_tag="SFZ84_001232"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG8203349.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            2557..3135
                     /locus_tag="SFZ84_001233"
     CDS             2557..3135
                     /locus_tag="SFZ84_001233"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG8203350.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            3132..4358
                     /locus_tag="SFZ84_001234"
     CDS             3132..4358
                     /locus_tag="SFZ84_001234"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG8203351.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCLQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            4355..6190
                     /gene="speA"
                     /locus_tag="SFZ84_001235"
     CDS             4355..6190
                     /gene="speA"
                     /locus_tag="SFZ84_001235"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG8203352.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            6191..6829
                     /gene="cysE"
                     /locus_tag="SFZ84_001236"
     CDS             6191..6829
                     /gene="cysE"
                     /locus_tag="SFZ84_001236"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG8203353.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            7001..>8055
                     /locus_tag="SFZ84_001237"
     CDS             7001..>8055
                     /locus_tag="SFZ84_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG8203354.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDEDIEKMRQAFEKRRNLALDMLKQIPKISIYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVV"
BASE COUNT         3025 a         1167 c         1363 g         2500 t
ORIGIN      
        1 tttacaatta gccttagttt tggggcagat aaaaccataa tcataggtgt aacaccaacg
       61 ccttatgctg aaattttaaa tttctctaaa cccttatttc aagaaaaagg ttggaagtta
      121 atagttaagg aatttaatga ctataatata cctaacatcg ctttaaatga aaaagattta
      181 gatgcaaatt tatatcagca taaacctttt ttagatgatt ttaataccca caaaggaaca
      241 aaattaagtt ctttaggtgc tattgtttta gttcctatgg ctatatattc taactccata
      301 aaagatataa aagacattcc taatggtgct aaaatcgcta tacctaatga tgctaccaat
      361 gaaagcagag ctcttgattt actagctaaa gcaaatttaa tagagtttaa aagtcaaagc
      421 acccttaaaa cccctattga cataagtaaa aatccaaaaa aacttaaatt tatagagctt
      481 aaagccgcac aacttccaag agccctaaat gatactgatt tggctattat taccacaaac
      541 tatgctcttg gagcaggctt aaacccttta aaagatggta tttttatgga agataaagat
      601 agtttatatg ctattgtttt agctacaaga aaaggtgaag aaacaagtca aaaaagtctt
      661 gttattaaag aaattttaac aagcgataaa attaaaaatt ttatcataga aaaatacaaa
      721 ggctctgtta tccctacttt ttaactctat acaaagcctt ctaaaggctt tgttaaactt
      781 ataaaagcta aaatactatt tattgcatta taattcttag gataaaaatg aaaattattt
      841 ttttaacttt ttttattgtg ataaattata tccaagcagc tagtttagaa gaaatcaaaa
      901 cagcactagc taaagaattt agaaataatt ttcctaaaat tataatttct caaattgatt
      961 taaaaataac atcattgcct aaagattttg atcaatatga atttctaaga atcgctaatg
     1021 ggcgttttaa tcaagcacaa ggctttttaa gggctgaatt taaaactccg caaaatatac
     1081 aaaaaaatgt attttttaga tatttcattc aagcaaattt agaagtttta aaaagcgaac
     1141 gcgctataaa aagaggagat aaacttggag cttttgacta taaaagcgta ttgattgatt
     1201 ttgataaagt tcctttaaat gccttaacct tagatgatgt agataatctt gtagctaaaa
     1261 gcaatattaa caaaaacgcc attttaagag caaatatgtt taaaaccaca gctttaatac
     1321 gccgaaatga tcctataatc gggattttaa gcgaagcaaa tgttgatgtt ttaatcgaac
     1381 ttgtggcttt gcaaagtgca aatatgggcg aaaggattcg tgcaaaaaac aaagaaggta
     1441 aagttatgca aggcatcgta gtgggtaaaa ataggatgat tatacaatga aggttttatt
     1501 aggaatttct ggttcaagca gtgtcaattt aggcttaaaa ttattaaaaa atctagaaaa
     1561 ccaatgcgaa ctttattgca ttttaaccca aggtgcaaaa cttagcttca aaactgaaaa
     1621 tcaagcaaat ttagaagaaa tttgtcaaga aaattttaaa tacacttatt ttttagatga
     1681 taaaaattta agtctaagtg tagcaagtgg atcttttgga atagaaaaaa ccatcattgc
     1741 tccttgttca atttcaagtt tagcaaaaat tcacgctggt tttgcagaca ctcttttaat
     1801 gcgtgctgca gcagtggcct taaaagaaag aaaaaaactt atcttaggcg tacgcgaaat
     1861 gcctttttct actttaaatt tagaacatat gttaaaactt agccaaatgg gagttattat
     1921 cgcccctcct attatcgcaa gctattctaa agcaaacaat ctagagcaaa tggaaaattt
     1981 tatcgcaggt aaatggttag atcttttaga aataaaacac aatttatatg aaaaatggca
     2041 aaatttttag tttaaatttg ttatattttt aaaaaaaatt ggagcaaaaa tgacttgttt
     2101 atatcctggg acttttgatc ctattaccaa cgggcattta gatgttataa aacgggcttt
     2161 aaaaattttt gatgaagtca tcgttgccat agcaaaaagt gaacataaaa aaccttgcta
     2221 tgatttagaa aaacgcaaag aactagccct gctcgcaaca caaaatttaa aaaatgttaa
     2281 aatcattgct tttgataatt tacttgtaga tttagccaaa gaattaaaag ttaatactat
     2341 aatccgtgga cttagagcag tgagtgattt tgaatacgaa ttgcaaattg gctatgcaaa
     2401 tcacgcactt tgggaagata tggaaaccat ttatcttatg ccaagtctaa aacatgcttt
     2461 tatttcaagt tctattgtgc gttctatagt agcacatggg ggtgatgtaa gttctcttgt
     2521 tccaaaagaa attctacctt ttttaaagga tcaatcttgt atgtagtttt tgaaggtatt
     2581 gactgcgtag gaaaaagtac gcaaatttca cttttaaaag aaatttacaa agatgccatt
     2641 ttcacactcg aacctggcgg aacagaactt ggaaaacatt taagagaaat tttacttaat
     2701 aaaactcatc ctattaacaa aagagctgaa ctcttgcttt ttttagctga tcgtgctcaa
     2761 cattttgaag aaatcttaaa aaccaatcaa aacaaactca ttattagcga tagaagtttt
     2821 atttcaggca tggcttatgc caaagatttt gaaaacgatt tgctttttgc tttaaatagt
     2881 tttgctttag aaaatttttt tccacaaaaa attatctttt taaaaggaga tgcaaacctt
     2941 atccaagaac gcctcagtca aaaagaacta gatagtatag aaaaacgtgg cattgagtat
     3001 tttttaagtg tacaggacaa actcgaaaaa gtgcttcatt ttttaaaaga aaaaatttct
     3061 gtagaaattt taacacttga cgcaaaagaa agtaaagaaa aattacacca acaaataaag
     3121 gaatttttac aatgattaac gctttaaaag gaatgaaaga tttattagat aaagatgcat
     3181 attattatga aaaagtgatt aaaacctgcg aagaagtagc taaaaactat ggctttactt
     3241 ttatcaatac accgcattta gaactttgca ccctttttaa aagaagcgta ggagaaagtt
     3301 ctgatatagt aggtaaagaa atgtatgaat ttatcgataa aggcgaaaat catgtttgca
     3361 tgcgtcctga aggaactgct ggggtggtgc gtgcctatat agaaaaaaaa ctcgataaaa
     3421 acactagtgt gaaaagatgg ttttatcatg gttctatgtt tcgttatgaa agacctcaaa
     3481 agggtcgctt aagagaattt catcaatttg gagttgaaag ccttggcata cctaatgttt
     3541 atgaagatgc aagcattatt ttaatgctag tagaaatttt ctcacgcctt ggtattgatt
     3601 ttaaacttca acttaattct ttaggctgct tacaatgctt gccaaaatac cgcgataggc
     3661 tcgttgaatt cttagattcc aaagaaggtt tttgtgaaga ttgtttgcgt agaaaaaatt
     3721 taaatcctat tcgtgtctta gattgtaaaa atgagcattg tcaaaatttg cttgaaaatg
     3781 ctccgctttt gatcaataat ttatgcacct cttgccaaaa agactttgaa acactgcaac
     3841 aaattttaaa ggataatgga gttaaatttg agttagattc aaaacttgtg aggggtttgg
     3901 attattattc taaaacggct tttgaattta taagcgatga aataggagca aaggctgcta
     3961 tcgcaggtgg agggcgctac gatagactta tagagtattt aggtggaaaa agtggctatg
     4021 gtataggttt tgccatgggt atagaaagaa ttataactat tttagaacaa aaagaagaaa
     4081 agattcaaag agaaggaatt tatctttgtg ctatggatga aatttatatc caaaaacttt
     4141 tgcatatcgc tacaaattta agaaaagaat ataaagtact tttaagctat gaagcaagaa
     4201 aactagccaa acatcttgaa aacgcggata aaaataatac tgaaattttt ctttgcatgg
     4261 gagaaaatga agcacaaaat gaaagtttgt tttataaaaa tttagcaaaa aaagaagaaa
     4321 aaatgattaa aatttcagac ttaaagaagg ttttatgatg gattatggta ttgatatttg
     4381 gggaaatgaa aatttcatta tcaaaaatgg taaagtttgt atcaattacg agaaaaaacc
     4441 tgctattatt gatatagtta aagaattaag agatgatgga tacaaggggc ctttactttt
     4501 aagatttcct catcttatcc aaaaacaaat tgaaaatatt tacggaaatt tcaataaagc
     4561 aagaaaggaa tttggctata aaggaggatt taacgctgtt tatcctttaa aggtcaatca
     4621 ataccctggt tttgtaaaaa atcttgtaaa acttggaaaa gactataact atggacttga
     4681 agcaggttct aaggcagagc ttttactcgc tatggcttat aataacgaag gcgcacctat
     4741 taccgtaaat ggctttaaag atagagaact tatcaacata ggctttatcg cagctgaaat
     4801 gggacataat atcactttaa ccatagaagg acttaatgaa cttgaagcta tcatagacat
     4861 agctaaagaa cgctttaaac ctaaaccaaa tataggctta cgtgtacgtt tgcattctgc
     4921 tggagttgga atttgggcaa aaagcggtgg gattaattct aaatttggac ttacatccac
     4981 tgaactcata gaagcggtaa atttactcaa agaaaacaaa cttttagaac aatttaccat
     5041 gattcacttt catctaggct cacaaattac cgaaattcac cccttgaaaa aagccttaaa
     5101 tgaagcagga aatatctata cagaacttag aaaaatggga gctaaaaatc taaaagctat
     5161 caatcttggt ggcggtttag ctgtggaata ctcacaattt aaaaatgaaa aaagtagaaa
     5221 ttacacccta agagaatacg ctaacgatgt agtttttatc ctaaaaaaca tagccgaaca
     5281 aaaaaaagat ttagagcctg atattttcat agaaagtgga cgttttgtag cagccaatca
     5341 cgctgtttta atcgctcctg tattagaact tttttctcaa gaatacgcag aaaacaaact
     5401 catacttaaa aaacaaaatc caaaacttat cgatgagctt tatgatcttt ataaaagtat
     5461 aaaaccttcc aatgctttag aatacttgca cgatagcata gatcatttag agagtatttt
     5521 aactcttttt gatttgggct atgtggattt acaagatcgt tccaatgctg aaattttaac
     5581 tcatttgatt acaaaaaaag ccatcttgct tttaggcgat aagcaaaatc ctgcggattt
     5641 acttgccata caagatgaag tgcaagaaag gtatttggta aatttttcac tctttcaaag
     5701 catacccgat ttttggggtt tagaacagaa tttccccatc atgccacttg atcgcttaga
     5761 tgaagaaccg acacgaagtg caagtatttg ggatataacc tgcgatagcg atggagaaat
     5821 ttcatactct aaagataaac ctttattttt gcacgatgta gatgtagaaa aagaaaatta
     5881 ttttctaggg ttttttcttg taggtgccta tcaagaagta cttggaatga aacacaatct
     5941 ttttactcat cctactgaag ctattataag catcaatgaa aaaggctatg aagtcgaggg
     6001 gattatagaa gcgcaatcca tacttgatac cttagaagat ttagactatg atatacacgc
     6061 tatcatggat atacttaatg aacgcataag taattctaag cttgtaaatg ataagcaaaa
     6121 aaagcatatt ttaggcgaac tttatctttt cttaaatgat aatggttatt taaaaagcat
     6181 aggagtttag atgaattttt ggggtattat aaaagaagat ttttctcagc caaaggcaca
     6241 agatccagct tttaattctt gtatagaact tttttttaat taccctggag tatgggctgt
     6301 agtaaattac cgctttgcac atttttttta cataagaaat tttaaacgca ttgctagaat
     6361 gattagcgga atttcacaat tcttaactgg ggtagatttg caccctggag cagaacttgg
     6421 aaggcgtatt tttatagatc atgccaatgg agtggttata ggtcaaacag caattataga
     6481 agatgatgtt ttaatttatc aaggcgttac tttaggtgga acaagccttg aaaaaggtac
     6541 taaacgccat ccaaccataa aaaaaggagt gatcataggc tcaggcgcaa aagtgcttgg
     6601 caatatcacc ataggagaaa atgccaaaat aggctcaaat gctgtagtgg ttaaagatgt
     6661 aggtgcaaat ttaactgccg ttggaattcc tgcttatatt atcgaagagc gtaaaaataa
     6721 aaacattaga gccatagatg caaattgcga tgacaaacta gaaaagttag aaaagaaaat
     6781 tttagaactt gaaaatctta tattaaaaca acctgaatca caaaaataat aattttttat
     6841 aatacataaa attatatgta ttattatgcg tattaatttt tcctaaaaat taatacaaat
     6901 tttcacattt attgaaattt acaactcatt tttaaattaa atttattgta aaaatgcaat
     6961 tttctgctaa aattaaacaa aaattatcaa ggattgaaaa atgcttacaa aaagatctca
     7021 agttttagaa gaatctatca ctttagctat cactgcactt gccaatgaac ttaaagccaa
     7081 aggcgaggat atcattagtt tttcagcggg tgaacctgat tttgacacac cacaaaccat
     7141 caaaaatgcc gctataagtg ctattgaaaa aggatgtgga aaatacactg ctgttgcagg
     7201 aattcctgaa gtattaaaag ctattcaaac caaatttaaa aaagataata atcttgatta
     7261 tgaaacaaat gaaatcatca ccaatgtagg cgcaaaacac tctctttttg aatgtataga
     7321 atgcttagta gaaaaagatg atgaagtgat tatccctagt ccttactggg taagctatcc
     7381 tgaaatggta aaatttgcag gtggaaaacc tgtatttata gaaggcttag aagaaaatgg
     7441 ctttaaaatt accgctgaac aattaaaaaa agctatcaca gctaaaacca aagttttgat
     7501 gctaaattct ccttcaaatc ctgtgggatc gatttattct aaagaagaat taactcaaat
     7561 tgctaaagtt ttagaaggaa cgcaaattac tgttttaagt gatgaaatgt atgaaaaact
     7621 tcgctatgat ggttttgatt ttgtagcttt tgcaagtgta agcgaagatg ctttaaaacg
     7681 cactgtgacc attaacggac ttagcaaatg tggagctatg ccaggatggc gttttggcta
     7741 tatggcaagc aaaaataaag ccctaatttc agctgttaaa agacttcaag gacaaagcac
     7801 ttcaaatatt tgctccatca ctcaacatgc agccattcct gctttaaatg gagaatgtga
     7861 tgaagatata gaaaaaatgc gtcaagcttt tgaaaaacgc cgtaacttag ccttagatat
     7921 gcttaaacaa atcccaaaga tcagtattta taaaccagaa ggtgcttttt atctttttgt
     7981 aaatatacaa aaaatagaaa aagattctat gaaattttgc caaaaattac ttgaacaaga
     8041 aaaagttgcc gttgt
//
LOCUS       DARGED010000075         8046 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.075, whole genome shotgun sequence.
ACCESSION   DARGED010000075 DARGED010000000
VERSION     DARGED010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8046
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.075"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..3753)
                     /locus_tag="SFZ84_001238"
     CDS             complement(<1..3753)
                     /locus_tag="SFZ84_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203355.1"
                     /translation="MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNID
                     FHQRKMLSKNQILTMEILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEIC
                     TKVYLEDLEEEIQDKKQDKDLNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIE
                     NIDPDNISSEKFDDFKKKVLEKIGNVIESDFFKNSISPTLKNTYEKFINELLEHIKKL
                     AEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRD
                     YGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIIDKKEIIDLSGFGLYLGSDESNIAS
                     NLAYKITLSEEIKSIENIFSEIFLNPEQKDKGYKNTPNDSKSSNLPAFISTQKLSNLY
                     LKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKISKNYL
                     IISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMP
                     QDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKE
                     KLAISENEPIIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEV
                     KESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNIN
                     LDLKKYGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYS
                     FVENDSSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYHLDEQKCIKEFMNLDEETQR
                     AFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFT
                     AQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKEQLGIFAPPKKNSIYHIHIKSNLII
                     KARLQQIEKELIHTKIQMILAQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWS
                     DKYMKQLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIF
                     LNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFVTYPFAINSKFISFDLKKI
                     FYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQK
                     YIIDDYTFYFKELKSLELKKCTIYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHAYN
                     EALQILQDFANGLYNTSKDKTGRYIEDKNKTRRLLEKLNIIGQNNLK"
     gene            complement(3798..4544)
                     /locus_tag="SFZ84_001239"
     CDS             complement(3798..4544)
                     /locus_tag="SFZ84_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203356.1"
                     /translation="MKYRYIKWDENEKCAIFFPDIDFDIWKKTQLLENDYANPTLIIS
                     SHLKDKVGILELFEYYILLICGKSMGVSRWECNNLILLDTYSIDNISSPFYLNTPKPT
                     YISEYINVLGQLFLAGYIDFGSYCDEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFYQ
                     DKFIRDLDDPETLDEGGYSLILNDVSWDTPQYWSQYNIWIATTPKGTKYFQEILAPKF
                     YNKYKDLEVEIDDKGNVLRWIGEINRDKKY"
     gene            complement(4534..6129)
                     /locus_tag="SFZ84_001240"
     CDS             complement(4534..6129)
                     /locus_tag="SFZ84_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203357.1"
                     /translation="MLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKK
                     QAIAKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPKEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQDKALNEFN
                     IDLKDLKDIEDLNILNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAY
                     KEFENKDLGAGYFTQLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLD
                     EILEDEDRKQELYVCKFVVVNGVSENNTQEIIPDNVIRIQTQDGSGEFIEIVFPSQLE
                     LNDKPLEDVSYTFVPALRGIKQFFKDTEYLKPRTLTKDEVLQIVDKLPKNVRDKRRRI
                     VENKEELDKLWKKLTKNSEEFENKVDKKYGQPIYMRKLDDQTIIQYKKTSKSGGETIE
                     INSNKPRGNLKTIHIENGIKNEI"
     gene            complement(6589..6984)
                     /locus_tag="SFZ84_001241"
                     /pseudo
     CDS             complement(6589..6984)
                     /locus_tag="SFZ84_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7047..7556)
                     /locus_tag="SFZ84_001242"
     CDS             complement(7047..7556)
                     /locus_tag="SFZ84_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203358.1"
                     /translation="MGEDITFSIFWGLVGFIFRLVTIDTILYITALSVLIAFSIINYW
                     MRINIKEFLKSYFSIYFIIFFTAIIIIFYLSYDLETYRGYVMLGPPEAEELSPQEYIV
                     YKCSKFLIFINFIFFTITFIILPCLLQAYFFKCYSTGEKHKKLSWFIGFVCNIIILIA
                     SVYVVYENL"
BASE COUNT         2671 a         1119 c          956 g         3300 t
ORIGIN      
        1 cttaagattg ttttgtccta tgatattgag tttttctagt aatcttctgg ttttattttt
       61 atcttctata tatcttcctg ttttatcttt acttgtattg taaagtccat tagcaaaatc
      121 ttgtaaaatt tgtaaagctt cattgtaagc atgaatagga ctatcttcat cctttttaaa
      181 agcactaatt tgcttttctt tatttctaaa ctctttaaac aaaggatgat tacaaggaag
      241 ttgatatata gtgcattttt taagttctaa agattttaac tctttaaaat aaaaagtata
      301 atcatctata atatattttt gttcttttat atcctctaaa gcagttgcat ttcttttctc
      361 atcaataatc aaataagaca aaagtctttt taaaagaaat tctttatttt cttcaagctt
      421 ttgatctatt tcataatgaa aggaaaaatg agtgtcaaaa actcctgtgc aaagatctat
      481 gccataaaaa attttcttta aatcaaagct aatgaatttc gaattgattg caaaaggata
      541 agttacaaaa tgatctctta taaccgctaa aggagaatca tctttaaagg tgtaaagctg
      601 ataaacaatg ctttcatatt gttcttgtag ggctttaaaa tttgttggaa agagataatt
      661 taaaaaaata cccacaaatt ctccagtcac aatagaagca aggtcaagtt tatttagctt
      721 agcataagta taaatagtat atttttgagt ttgtatatct atgctatgca taagagcaat
      781 tttagatata ttgctttctt gattagagta tataaataat tgcttcatat atttatcact
      841 ccaataaatc ttaatttgtt tttcattaaa gtattctttt atctttgtga taaatagatt
      901 taaaccggat gtattttttt gtattattaa attggatttt atctcttgtg ctaaaatcat
      961 ttggatttta gtatgaatta attctttttc tatttgttgc aagcgtgctt ttattattaa
     1021 attagatttt atgtgtatat gatatatact attctttttt ggaggtgcaa aaataccaag
     1081 ctgttcttta aaaaattctt taaatccttc tttgtttatt ttaatacaag cttgaataac
     1141 atattctatt gtttttaaaa aattaaaatc ccacaacatt tgagctgtaa agctgataaa
     1201 aggactagca cttaataaaa tttttaacat tgcataagta aatatttcac ttgttttttg
     1261 ttcttttgcc ttatttaaat attcttttcc atacatctgt tccaaaagct ttgataaatc
     1321 tgatatttgt ttctctatat ccatccatgc aacaaaagct cgttgcgttt cttcgtctaa
     1381 attcataaat tctttaatgc atttttgttc atctaaatga tacatttgct ttaatttgat
     1441 tattttttta tctaatgtat ttgttgtatc taaatctttt gataattcat taaaaaaatc
     1501 atctatagtt atcgaactat cattttccac aaaagaataa tcttttttgt caagtatttt
     1561 taataattgc gatacaactt catatgctgt aatatttgtt ggctcattat ttacatatat
     1621 tggacattca tctgtccata aaacataagt tttatctaag tattttatat atacaaaatt
     1681 actgcctcca tattttttca aatccaaatt gatatttgga aaaataagct tagcttgata
     1741 caagacaaat gaaatgaata aacattccat taaagaatag ttcccaaatg aagatttatc
     1801 cgatttttca aaaaactctt ttttcaaaaa agttaaatat tgatgagcta tctttttttc
     1861 tttttctatg atggattctt tgacttcgtt ttgtttaaag aattttttga tataaaaata
     1921 aggaagccat tttttatcat ttattttttt attgtagtca atataagcta aaatgtttat
     1981 tcgttcgcaa tgtcgtaaat tttccgtctt ttttactatt tctattattg gctcattttc
     2041 tgatattgct aatttttctt tagctgtttt tgcgaattct ggtagcttct gaggtgtagc
     2101 aacaaaattt gttaaatatt tataaacctt ttgcatatct tcataagctt ttttactatt
     2161 ctcataagct tctttggata ttttcacaaa agggcttaat tgtaaaatat aaggttcatt
     2221 ttcatcttgt ggcatttcta tgctatattc gctataatct cttgtgctgt cataagtttt
     2281 ttttgaagta tcaatatttt ttttaattct tctgtattta tcttgtatat tatagttggc
     2341 gatttcttga gttaaacttt cactaagtcc tgcattgtat ttattgggga tatttgaaat
     2401 aatcaaataa tttttactta ttttagttgt atttaaatct atttgtgcat tttgattttt
     2461 ttgtgcgaaa aattcagcta gtttacttga gttaaaattt ggactttcta tataggaaaa
     2521 ataaataaat tgtttaatat cttcttgcaa attctttaaa atagcattgt tttttaaata
     2581 caaattagat aatttttgcg ttgaaatgaa agcgggtaaa ttgctcgatt ttgaatcatt
     2641 gggtgtattt ttatacccct tgtctttttg ttctgggttt aaaaagattt cactaaaaat
     2701 attttcaatg ctttttattt cttcgcttaa agtgatttta taagccaaat tcgaagcgat
     2761 attgctttca tcacttccaa gatataatcc aaaaccactt aaatcaataa tttctttttt
     2821 atcaataatt aaaacacaag ataacaagcg agaattaata taatgaataa acatagcaca
     2881 tctagtggct aaaaatgcgg ctaaaggcgt taaaagtgtg ccataatctc tttgagcaaa
     2941 ttcataatac tcgcttgcag aacccattaa agaaaataaa ccagcagcca aaatagctaa
     3001 tcctgcccca cctgtaagaa cagctaccac tgtggctatt gcaacacccg ctatagcact
     3061 tagtatgatt ttaatttttt catattcttt ttcttcggca agttttttaa tgtgttctaa
     3121 caactcattg ataaattttt cataagtatt ttttaaagtg ggacttatgc tatttttgaa
     3181 aaaatccgat tctatgacat ttccaatctt ttctaaaact tttttcttaa aatcatcaaa
     3241 tttctcactg cttatattat caggatcaat gttttcgatt aactcgtcta aggttgttat
     3301 atcttcagaa tctttagcta gttcttttaa agtattgata aattcgatac aaagattatt
     3361 tttatctgta tgataaaaaa gattcaaatc tttatcttgt ttcttgtctt gaatttcttc
     3421 ttctaagtct tctaaataaa ctttagtgca aatttcactg cttgataaat cttttaaatt
     3481 tacattttgt ccagcatcaa gctcattaag ggtatggata tttatttcta tattattgtg
     3541 attatcacaa gtttgtttta aaatttctag tatttccata gtcaatattt gatttttaga
     3601 tagcattttt ctttgatgaa aatcaatatt ttttaatata gcgtgtaaaa tagaaaaatt
     3661 aggataaata aaatcaatct gtttaacttc tttattgttg attgttaaat ttttaatagt
     3721 ttgaattaac tctgttttag aacttataaa cataaaagat tccttatata aagcattatt
     3781 atatcatttt ttatttgcta atattttttg tctctattaa tctctcctat ccatctaagc
     3841 acattaccct tatcatcaat ctcaacttct aaatctttgt atttgttgta aaatttagga
     3901 gctaagattt cttggaagta ttttgtgcct tttggggttg ttgctatcca gatattgtat
     3961 tgtgaccaat attgtggtgt atcccaagaa acatcattta aaataagact atatccaccc
     4021 tcgtctaatg tttcaggatc gtccaaatct ctaataaatt tgtcttgata aaagaaatta
     4081 tctctaaaat atatccaagc ttgatattta tcttctttat aataagataa gtttgaggga
     4141 taatctattt tatttctatc ttcatcacaa taagatccaa aatctatata acctgctaga
     4201 aaaagttgcc ccaagacatt aatatattca cttatatagg taggtttggg tgtatttaaa
     4261 taaaatggac tgctaatatt atcgatgctg taagtatcta ataaaattaa attattacat
     4321 tcccaccttg agacacccat gctttttcca caaataagca aaatataata ttcaaatagt
     4381 tctaaaatac cgaccttatc ttttaaatga gatgatataa ttaaagttgg attagcataa
     4441 tcattctcta aaagctgggt ttttttccat atatcaaaat ctatatcagg aaaaaaaata
     4501 gcacactttt cgttttcatc ccattttata tacctatatt tcatttttta tcccattttc
     4561 tatatgtatt gttttaagat ttcctcttgg cttattggaa tttatctcta tggtctcacc
     4621 cccgctttta gaagttttct tatattgtat aatagtttga tcatctagtt ttctcatata
     4681 aatcggctgt ccgtattttt tatctacttt attttcaaac tcttcagaat ttttagttaa
     4741 ctttttccat aatttgtcta attcctcttt attttcaact attctcctgc gtttatctcg
     4801 aacatttttt ggcagtttat ctactatctg caacacttca tctttagtca atgttctggg
     4861 ttttaaatac tcagtatctt taaaaaattg ctttatccct cttaaagccg gaacaaatgt
     4921 ataactcaca tcttccaaag gtttatcatt gagttctaat tgactaggaa atactatctc
     4981 aataaactcc ccactgccat cttgtgtttg tattcttata acattatcag ggataatttc
     5041 ttgagtattg ttttcactaa ccccatttac caccacaaat ttacaaacat aaagctcttg
     5101 ttttctatct tcatcttcta agatttcatc tagtccttgt gcgatttgaa gttttaaatt
     5161 ttgcattttt gcaggagcta aaaaactaaa atgatattcg tttaattctt tattatcttc
     5221 taaagcattt ttgatgattt tatcatactc atgtagctgt gtaaaatacc ctgctcctaa
     5281 atctttattt tcaaattcct tataagcact tttataaact ttagcaatgt tttttgggat
     5341 aataaaataa agtttgatta aattagtatc aaagctaaga tttaattctt taaattcata
     5401 atctttacta aagtcttgtt tgaattgatt aagaatattt agatcctcta tatcttttaa
     5461 atcttttaaa tctatattaa attcatttaa agccttatct tgttcttttt tttcattatt
     5521 gattaaaaga ttatagatag gtaaattatc tttttgaaat ctatcacttt tataatgaag
     5581 tcttattata ggttctttta actctatttg atttttactt tgttctccta agccctcttt
     5641 aggatcaaag ctgtgatcaa atttaaactt agtaggagta aagcttactt ttaaagcaaa
     5701 gcctttatct gttttacaag ctgagatgag ttcttgtaag attacatatt cattattgac
     5761 tttcttttga gataaggatc cttttacatt aacaactttg gtacaaggaa cacttacacc
     5821 tgctatagta ttaggacaag ctactatact agagtttaat aaatcacttt ctagcattat
     5881 aggcacacca tcatctttaa aagtttttcc tttgtttgat ttaagtatga ctttacctcc
     5941 atggatacat tctaggtttt gattttctaa aagagcatga agtttagcta tagcttgttt
     6001 tttatctact tgtgtggttt tttgttcttt taaagtgttt gaaattaagt ctttatactc
     6061 taagctttgt ttgcttaaac attctaattt aatatttaaa gaattttcta atatagaata
     6121 attaagcaaa caaagttcat catttttata aaagatacta agtcttcctt tgccactgct
     6181 ttcatcttta ggagaaaaat aataactagg tgtatcttgt tttatagtat tatcttgatc
     6241 taattctcca aagtaaaaag gattattagg aagttcattt gatcctgtaa ggagggtgga
     6301 gtttaggaag atttttatat ctaaactttt aaaatctatt tgatattttt cttctatgtc
     6361 ctttatatcc aaaacacttc tatcttttgc aaaaatatca caatgattat cataaatatg
     6421 gatcaaattt gacatagaga tgaaagaagt attgttagaa ttatcttgca aatcttgtaa
     6481 atttacttta tctaagaata tgatttttat attatttgtc tttaatacta tggtattggt
     6541 atttttatca taaaattgct ctatgttaaa tacttcgttt aaaattaaat taacatcatt
     6601 ttccttagta ttaaagcttt gattatttag attatcttgt aaggaaattt ctttatttaa
     6661 atagtcttgg atatctttta ttttttcatt tcttttttct tttaaagtat tgatagattt
     6721 ataaagcctt tttctagcat caagataggt atcattgagc ttttctttat ctaggatgaa
     6781 gatctttgtg aaagtagaat tatagcctag attgtttata gcggtagctt gggtgaaaag
     6841 ctcttcttga ttataattta tagctatgga attttcacat tgatataagg cttttaagta
     6901 tgctatggat gaatttttat ctattgtgtc tatttcatca ttgtttataa aagcaagcct
     6961 tgttataaat aattctctat ccattttttt ctaaatattt aagataaatg aatattatat
     7021 caaatatatt aaatttttga tagtctttaa agattttcat ataccacata cacactcgca
     7081 attaatataa taatattaca cacaaaccct ataaaccaac ttaatttttt gtgtttttct
     7141 cctgtgctat aacatttaaa aaaataagct tgtaataaac aaggaagtat aataaatgtg
     7201 attgtaaaaa aaataaaatt tataaagatt aaaaatttag aacacttata tactatatat
     7261 tcttgtggtg ataattcttc agcttctgga ggaccgagca ttacatatcc tctataagtt
     7321 tcaagatcat agctaagata aaatatgata ataatagctg taaaaaagat aataaaatat
     7381 attgaaaaat aagattttaa aaattctttt atgttaattc tcatccaata atttataata
     7441 gaaaaggcaa taagaacgct taaggctgta atataaagta ttgtatcaat agtaacaagc
     7501 ctaaaaataa atcctaccaa accccaaaaa atagaaaatg taatatcttc tcccatttaa
     7561 actcctgtat tataaagcac attataagct tcatctttaa aatcaagttt agtgataaaa
     7621 tctttactat aaagtctaaa atccaaacca taaggagtga atttttgata gtctttaaag
     7681 attttcatat accacataca cactcgcaat taataaaaag atattacaca caaaccctat
     7741 aagccaactt aattttttgc gtttttctcc tgtgctataa catttaaata aataagcttg
     7801 taataaacaa ggaaatatga taaatgtgat tactaaaaaa aacatagttg caaaggttaa
     7861 aaatttaaaa taattacgca ctctatattc ttgcggtgat aatttttcaa tttctggagg
     7921 atcaagtaat acaagcgatt tataaaattc aagatcatag ctaagataaa atatgataac
     7981 aatagccata aaaaagataa taaaagatat taaaaaataa gattttacaa attcttttat
     8041 gttaat
//
LOCUS       DARGED010000076         7591 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.076, whole genome shotgun sequence.
ACCESSION   DARGED010000076 DARGED010000000
VERSION     DARGED010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.076"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            100..1590
                     /locus_tag="SFZ84_001243"
                     /pseudo
     CDS             100..1590
                     /locus_tag="SFZ84_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275251.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1789..3342
                     /locus_tag="SFZ84_001244"
     CDS             1789..3342
                     /locus_tag="SFZ84_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEG8203359.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3358..5148
                     /locus_tag="SFZ84_001245"
     CDS             3358..5148
                     /locus_tag="SFZ84_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG8203360.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDVKASEFRAQSKYYISDSFTTIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5269..7074)
                     /gene="mrdA"
                     /locus_tag="SFZ84_001246"
     CDS             complement(5269..7074)
                     /gene="mrdA"
                     /locus_tag="SFZ84_001246"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8203361.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSHTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(7075..7569)
                     /locus_tag="SFZ84_001247"
     CDS             complement(7075..7569)
                     /locus_tag="SFZ84_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203362.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILFYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
BASE COUNT         2699 a         1148 c         1100 g         2644 t
ORIGIN      
        1 attattataa aaaaaatatt taaaaatatt gtaatttaat tatttttcta ttactattag
       61 ttaaaatatt ttaagcataa aaaagaaagg tattgggaag tgactaaaca agaaatacaa
      121 aaactcgata caaatttact aggtcatccc aagcctttat tctctctatc aatggtagaa
      181 ctttgggaaa gatttgcttt ttatggcata cgatctttac ttgtgctttt catggcaaca
      241 accataagca aaggtggact tggaataagc actgaatacg cctcggcaat ttatggcatt
      301 tttgcaggat gcttgtattt agcagcactt cctggaggct ggattactga taattattta
      361 gggcaaaaaa aggctttatt tttaggttct tttattatag ctttaggaca tattagcata
      421 gccttatcta ttttaagcac acctatattt ttcctaggac ttcttttatc gttattggta
      481 ctggattttt taaaactagc gcttctgtaa cagttggaat gttgtataaa caaaataata
      541 caagatgcga tactggctat acgatttttt atataggaat taacattgga gcattcattg
      601 ctcctcttat atgtggtttt gttcaagcaa aatggaatta tcatttagga tttgtcatag
      661 gaggtttagg tatgctaatc tctttgctta ttttatattt taaagctgcc cttgagcttg
      721 aagaatttca taaaaattgt accttaaagc aaaactggga acaaccattt aaaaaagtaa
      781 aaaatttaac tcttatacta agtataagct tgttaagtat tattggattt tttctaatgt
      841 ttattaatct tgtaaatatt aatcccatat aatactatca aaaaaacttc taattgtaat
      901 tttactatgc ttggtaattt atttcatata tctttttgtt tttaaagcct taaataaaag
      961 agagaaacaa caattaataa ttttaattgt tttattcttt gcagccactt ttttttggag
     1021 tgcttttgaa caaaaaccta ctgcttataa tctttttgcg caagatttta caaatagaaa
     1081 tatttttgat tggaaaattc caacaaactg gtttcaatct tttaatccaa tttttatcat
     1141 catacttgct cctatagcaa gttatatttg gatattttta gagaaaaaaa tatatatttt
     1201 tcttccattg gaaaatttac tttaggaata ttatttgccg gtattggttt tatgatgatg
     1261 acctttgctt cacaaaatct aataaacaac aatggtttgc caatatccat ggcttggatt
     1321 atcataagta tattcttttt aacacttggg gaattatgcg tgtctcctat tggactctct
     1381 ataatggcta aggttgcccc tgatttaatc aaaaatcaaa tcatgggact ttggtttgta
     1441 gcaagtgcgc ttggaaattt tgttgcagga cttataggag gaaatgtcaa tattaaaaac
     1501 atcgatcaac ttcctaatat ttttggacaa tgcatgtgga tgctttttgt tgtagcactt
     1561 ttgcttttta ttgctaaaaa accatcttaa caaaaaaaat aagcaattat ctaactaaac
     1621 ttaaaataca aaatacacca aagttgaaaa ttgatcttaa tatttctttt tttatatttg
     1681 caaaaaagta acattatgat ataaatcatt taaaaatatt acaaagttat acatattttt
     1741 taatttcttg tctataattt ataaataaaa atacacaaag gatataaatt gagtaaaaat
     1801 gtaaaaaatt tagatacttc attttttgga catccaaaac cacttttatc tctttcactt
     1861 actgagcttt gggaaagatt ttctttttac ggaattcgtc ccttgcttta cctttttatg
     1921 atagcaagtt ttgaaaaaag tggaatgaac ttaaaacctg aagaagcaag tgcaattatg
     1981 ggaatttttg caagttgttt atatcttgct gctttgccag gtggatggct tgcggacaat
     2041 tacttaggac aaaaaagagc aattttacta ggtgctctaa ctatagcatt tggacatttg
     2101 tgcatagcct tttcttattt taacaataaa atgatttttg ttggtatggt ttttttggtt
     2161 ataggtacag gactttttaa aacttgtgct tctgtaatgg ttggaatgct ttataaaaaa
     2221 aatgatgcaa ggcgtgactc tggttttact cttttttata tgtgctttaa ttttggtgct
     2281 tttgtagctc ctttaatttg cggcttttta caaaaagaat acggatggca ctttggtttt
     2341 ggtgcaggtg ggattggtat gcttttagcg gtaattattt tctacctaaa aactatgcct
     2401 gatttaaaag aatttgatga aaaagttggc atagactcta cttgggatag accaagcaaa
     2461 aaaagcaaaa acgcatttta catcatcatt gtatcaggta ttgttttgct tggagcaata
     2521 tttttaatcc ttggtggttt tataaaatta gatgcacaag ttattaataa aaatattatt
     2581 ctaactatct tagcttgtgc tggaatttat tttttatatc ttttcgcttt tacttcttta
     2641 aaaatagaag aaaaaagaaa tttaattatt tttattgttt tatttttagc ggctgcgtta
     2701 ttttggtcag tatatgagca acaatatact tcttttaatt tttttgcaga aaaattaaca
     2761 gataaaacca tattaaatta tgaaattcct acaatatggt ttcaatctct tggaggttta
     2821 tttgttatac tttttgcacc ttttagtgct tttatatgga ctatatgtgc caaaaataat
     2881 aaagaaattt catctattat taaatttgca ttaggacttt tgggtgcagc tttggcattt
     2941 ttaataatgg ctttagcttc aaatcatgca attagtttaa atggcgatgc taatacatta
     3001 agagaaaatt tagaaaattc atcacaaatt attttagttt caccttggtg gcttgtcagt
     3061 agctttttgc ttatggtttt aggagagctt tgcctttccc ctgtgggact ttctataatg
     3121 acaaaaattg cacctaattt aattaaatct caagtcatgg gactttggtt tgtagcaagt
     3181 gcattaggta atgctttagc tggattcata ggtggtaaag caagtgaaga aaatatagct
     3241 tatttgccaa atttatttta ccaatgtatg tggatattac ttggtgctgt tataatttta
     3301 cttatactca aaaaacctat caataaaata ctaaaaaatt aatattaagg agaaaatatg
     3361 agtatttaca aacaaagagt attagaactt agaagattaa tgaaagaaaa taatattgac
     3421 gcctatctca tcttaagcgc ggatccgcat ttgagcgaat atttaccaga atattacaaa
     3481 aacagagtct ttatcagtgg ctttaagggt tctgttggaa cagttcttat cacacaagaa
     3541 gagggctttt tgtgggtaga tggaagatat tggcttcaag cacaaaagga attagaaggt
     3601 agtggcatac ttttacaaaa gcaagatgct aaaaatactt ttaccaaatg gttggaaaaa
     3661 aatttaagcg aagatcaaat tttaggcatc gattttgcac ttttaccttt atctttgcaa
     3721 aaagatttaa agattaattg caaggcaaat ttaaaacata tagatttgat aagtccgctt
     3781 tggaaagatc gtcccacttt accacaagaa aaaatttatg aacacgaact agaatactgc
     3841 tcttactcaa gaaaagaaaa attagcatta gtgcgtcaaa aaatgaaaaa tttaaatgtt
     3901 acctctcatt taatctccag ccttgatgat atagcttggc ttacaaattt aagagggaat
     3961 gatgtaaatt ataatcctgt atttttaagt catttgctaa tcttggaaga caaagccttg
     4021 ctttttgttg atcagaaaaa agtaaattca gaacttgaaa aaaaattaaa tttagatggg
     4081 ttttggctta aaaattatga tgaaatcatc atggagcttg aaaaacttgc aaatacaaat
     4141 ttgcttattg aaccttcaaa aatgaccgct ttactcataa attctttaga taaaagcgta
     4201 aaaatcattc aagaaattaa tccaagcact cacttaaaag cagctaaaaa tacaaaagaa
     4261 atagcgcata tacaagatgc tatgatagaa gatggagtgg ctttatgtaa attttttgcc
     4321 tggcttgaag aagcgataga aaataaagaa ctaataagcg aattagacat agatgttaaa
     4381 gcaagcgaat ttagagcaca aagcaagtac tacataagtg atagttttac cactatagca
     4441 ggctttaacg aaaatgcagc atatccacat tataaagcca caaaagagag ttttgcttat
     4501 cttaaaaaag atgggctttt acttattgat tctggtggac aatataaaaa cggcacaaca
     4561 gatattacac gcgttgtacc aataggaaag gctaatgcag aacaaattca tgactatacc
     4621 ttggttttaa aagcacatat tgccatttcc agtgcaattt ttccaaaaga tatagctatg
     4681 cccttacttg atgcaatcac acgcgcacct ttatggaaag aacaaattga ctatatacac
     4741 ggcacaggac atggcgtggg atatttttta aatgtccatg aaggtccaca agttttatct
     4801 tatctatccc ctgtgcttga aaaaacaaaa gccaaagaag gtatgctaac ctccatagag
     4861 ccaggtattt ataaagtagg taaatggggc ataagacttg aaaatttagt tattcatacc
     4921 aaagtagaaa atcctaaaaa taaagatttt ggagagtttt tatactttaa acctgttact
     4981 ctttgtcctt ttgaaatatc ttgtattgat acaaaaatgt tagatgaaaa agaaaaagaa
     5041 tggttaaaca attatcacaa agaagtattt gaaaaacttt ctcctaagct aggtgattat
     5101 ccaaaagctc tagtttggct tgaaaaaaga acaaaagcca tcttttaaga tacttttgtt
     5161 aacatagata aattttcctt gtattaaact tataatttgt ttaatacaag atttttaaac
     5221 caattgctaa aaaagttttt tttgaaaaac tcaatttaca actaaaaatt atttaaaata
     5281 tccaagttca atcatttttt gataaatttt agctacagtt gcccctgaag taatatttct
     5341 cccaccatgt tccaaaagaa cggtaactac atattttggc ttagaataag gagcataaga
     5401 agtaagccac gcatgagatc tagtataata ctcaaattgt ttttcatcaa ccctattttt
     5461 atctgtttgt gaaaatccca caacctgagc agttcctgtt tttgctgcaa ctttcacatc
     5521 aagattatgc aaataacgat aagaggttcc tccttgctca ttagcaacag catacattgc
     5581 atctcttata taaggcaatt gactcttttc aaacaaagta aaaatttctt ttttattttc
     5641 atccatttga ttttctatag ttgtattatt attttctatg ctttttaaaa aatgaggtat
     5701 aacctctcca ccttttgcga tttgagccgt atatctagca atttgcatag gtgttgcaag
     5761 aaaattacct tgacctatag ctgtatttaa agtatcacct tgaaaccaag attgtctata
     5821 tctttgcatc ttccattctt tgcttggtaa agttcctaca aattcactag gtaaatctac
     5881 ccctgttttc gctccaaagc caatgcgaga taaagtttca cttatttgat cgattccaac
     5941 ttgcaaactg ccattataaa aataaacatc acaactatat tttatcgcat gttttaaatc
     6001 cacaggtcca tggcctgatc gattccaaca tctaaaaaac ctgcctccaa gttcaatgct
     6061 tccattgcaa acatattgag tcgacgggct aatattttta gaatttaaaa aagaaagccc
     6121 tactcccatt tttacaacag aacctggagg ataatatcca tttataagtt tatttgtaaa
     6181 aggatgatca agactatttg aaagctcatc ccaatcctta aaagaaatcc ctgttacaaa
     6241 aggattaaga tcatattcag ggaaactccc tgcagctaaa atagatccat catttacatt
     6301 cataattata gcagctccag cattcccttc aaacaatgaa gttaaataag actgaagctc
     6361 tatatctatc gtaagttcta tatcattaga catagcagga gtgtgagaaa gctgttctac
     6421 ttcttgattt aaggcattaa ccttataaac cctagttcct ttttctcctt gtaaaatatc
     6481 attataatag cgttctatac cgctttttcc cgtatagtta gaaagttttg ctatttcatt
     6541 ttcttgaaca tcttgcaaat ttgccttacc tacataccca ataatatgcg aagccaattt
     6601 tccaaaagga tattttcttt ttacaacagg atctattttt attgttttat taagatttaa
     6661 ctctgaataa tgcggaataa tctcatcgta gggtataaaa tctacaactt taataaaatc
     6721 ttgattatag taagaatcat ttctcttata aatttctgct aatttactag catttaaatc
     6781 aggaaataaa tttgtaagtt cagataattc tttatctaaa attcctttat ttgacttttt
     6841 aatacttaaa taaggtttaa tagaaatact aaaacccaaa tcattaatag ccaataaagt
     6901 tccatttcta tctgtaattt gacccctaac aggtggtaaa aattcagttt ttatggcatt
     6961 ttgtttagca agctcttcat aatatacatt tgattttata ctcaaataat acacacgact
     7021 taataaaaat ataaaaaaca atagtataaa tccaacaact agacgcattc tcatttaaat
     7081 tttaccttta aaaaacacat aagctaaaca acattctata aaaactgaaa caatatacgc
     7141 ccatcctaaa attttaattt tttcatctcc aatataaaac aatatcatat ccaaaaacaa
     7201 aataatgccg taagcacaaa gcacaaaaac aacagggata aatttaccaa tttttaaatt
     7261 tgtcttaatc caatctgcac aaagataata aaaaataaaa aatgccaacc aagatgaaaa
     7321 aataaaaaaa ttataagtta tatcagtaaa aaataaaaaa aataaagaaa aataccatct
     7381 aaaatcaagc tttgaaaaag ttctctctct ctcttctaat aagcaaaaca tataacagaa
     7441 aaaaatccca taaagtaacg gggtatatac aaaagtcgaa ccaagaatct gataaattag
     7501 aaaaaaaaat cctaaaaaga cataagctcc attaaatttt gctttataag cacttaaatt
     7561 tcttctcatt tatcaagacc taaagtttga t
//
LOCUS       DARGED010000077         7569 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.077, whole genome shotgun sequence.
ACCESSION   DARGED010000077 DARGED010000000
VERSION     DARGED010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7569
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.077"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..821
                     /locus_tag="SFZ84_001248"
     CDS             <1..821
                     /locus_tag="SFZ84_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8203363.1"
                     /translation="VFYTIAFIVLFLVFSGFYIKYLDSKLSDISEKREELLKKSKELE
                     LSNSQMQKSIEEKTQQYAAIEDKIASFEEALGLEVENNLTISARLDNLQLTNEQQLGI
                     LGQIPNGWPIENKGITGNFGWREHPLLKRREFHPGIDLRAEIGTPIYAPASGVVEFSG
                     YSDNGYGYNVILLHNFGFKTVFAHMMRKEVVKAGQFVNKGQLIGYSGNTGLSTGPHLH
                     YEVRFINKTLEPLYFLNLQRKNMNDFFNQERRVPWQSLIKAVSAQHPALAQKQQ"
     gene            758..1153
                     /locus_tag="SFZ84_001249"
     CDS             758..1153
                     /locus_tag="SFZ84_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG8203364.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            1153..4089
                     /locus_tag="SFZ84_001250"
     CDS             1153..4089
                     /locus_tag="SFZ84_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8203365.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKIILLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQIPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKVQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGRIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVYEVYEIEGEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            4091..4852
                     /locus_tag="SFZ84_001251"
     CDS             4091..4852
                     /locus_tag="SFZ84_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203366.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLYAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            4849..5535
                     /locus_tag="SFZ84_001252"
     CDS             4849..5535
                     /locus_tag="SFZ84_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG8203367.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            5532..6344
                     /gene="thiD"
                     /locus_tag="SFZ84_001253"
     CDS             5532..6344
                     /gene="thiD"
                     /locus_tag="SFZ84_001253"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG8203368.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGIIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            6334..6966
                     /gene="thiE"
                     /locus_tag="SFZ84_001254"
     CDS             6334..6966
                     /gene="thiE"
                     /locus_tag="SFZ84_001254"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8203369.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            6944..>7569
                     /locus_tag="SFZ84_001255"
     CDS             6944..>7569
                     /locus_tag="SFZ84_001255"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG8203370.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICANQSLLDCVKLAKTLV"
BASE COUNT         2760 a          871 c         1426 g         2512 t
ORIGIN      
        1 tagtttttta tactattgct tttattgttt tatttttagt ttttagtggt ttttatatca
       61 aatatctcga tagcaaactt agcgatatca gtgaaaagcg tgaggagctt ttgaaaaaaa
      121 gcaaagaatt ggaattatct aattcgcaaa tgcaaaaaag catagaagaa aaaactcagc
      181 agtatgcagc tatagaagat aaaatagctt cttttgaaga ggctttgggc ttagaagtag
      241 aaaataatct tacaattagt gcaagacttg ataatcttca gcttaccaat gagcagcaac
      301 ttggaatttt gggacaaatt cctaatggat ggcctattga aaataaaggc attacaggaa
      361 attttggctg gagagagcat ccgcttttaa aaagaaggga atttcatcct ggtattgatt
      421 taagagcaga aattggtacc cctatttatg caccagcaag tggagtagtg gaattttcag
      481 gttatagcga taatggctat ggctataatg taattttatt gcataatttt ggttttaaaa
      541 cagtatttgc tcatatgatg cgcaaagaag tggtcaaagc aggtcaattt gttaataaag
      601 ggcagttgat aggttatagt ggcaatacag gtctttctac ggggccgcat ttgcactatg
      661 aggtaaggtt tattaataaa actttagaac ctttgtattt tttaaatttg caaagaaaaa
      721 atatgaatga tttttttaat caagaaagga gagttccatg gcaatcttta ataaaggcgg
      781 tatcagccca acatccagct ctagctcaga aacaacagta atttcttcag gtgcgagaat
      841 tgagggtaaa ttttattttg cttctatgct ccatgttgat ggagagttaa gtggcattat
      901 tcattctgaa agcattgtgg ttatcggaaa aaatggaaat ttaaaaggtg aattacaagc
      961 agataaaatt gtagtaaatg ggtgttttga agggcaactt gaggctaata gtttagaaat
     1021 tttagcgggc ggagttgtta atggtgatat ttcaacgcaa aaaatttcta tagaaaatgg
     1081 cggtcgcttt aatggaacta gtaaaattaa agaagatact atcaaactta ttgaaaataa
     1141 caacgaagaa taatgcaagc ttcattttat gaatacttac aaaatccaaa aatttgtgaa
     1201 ctttttcttt gtaaagatga aaaacaagca gatttactcg ctcaagtttc acgatttaag
     1261 ggtttaaaaa cctttgtttt acctgatttt agagcgcagt ttggagatga tttaagggct
     1321 ttttctaaag aactttttga tctttgtaag attttaaatg cttatcataa agaagaagaa
     1381 aaaaaaatcc ttatttctcc tttaaatact gttttaaaaa aacttccttc aaaaaaacat
     1441 ttacaaaatt atcatatcga taaaaaacaa aattttgatt tgaaatgttt tgaagatgaa
     1501 atttcaagat tgggatacga atttgtagat atagttcagg ataaaggtga aatttcaatt
     1561 cgtgcggata ttattgatat tttttgtatc aatgaagaaa atcctattag aattttactt
     1621 tttggcgaag agattgaaag tataagatat tttgatttgc aaagtcaaaa gtctattcct
     1681 aacgaactag aacattttga aatttgtcct tttttaaaat attttgacaa agaaaattat
     1741 gaaattttta aggacaaatt agaagatttt caaagcgata ctttaataca tgatatcaat
     1801 tctttaggct tttggtgtat tgatgatttt tttgattatt tagaacttga ttttttagct
     1861 tgtgaaaagt ttgatattaa tgaatatgaa aaagatataa gttttgtgaa tgcaaaaatt
     1921 ttacctcaag ctaaaaaatt taaagaattg caaagttctt acaataaaga tttttttgaa
     1981 tttcataaaa ataaaaaaat catactttta gctaaaaacg aagctttatt taaagcttta
     2041 gagcttgaag atactcaaaa tatccatttt gtaaaaagtg atttaaggct taatcttatt
     2101 agtcctgaag agctaattat ttctttaaat caaaaagaaa aacaaaaaac aagaaaaaaa
     2161 gctagtttga ttatagatga gcttaaaaat ggggattata tagtacacga agattatggg
     2221 gtaggtaaat ttttaggtct tgagatgata gtgataagcg gagcaaaaaa agagtttgtt
     2281 gctatagagt atcaaaattc tgataagctt ttattaccag tggaaaatct ttatttgatt
     2341 gataaatatt tgggcgtgag tggatctatt ccaagcttag ataaactagg taaaacaagc
     2401 tttattaaac ttaaagaaaa attaaagact aaacttttag ccatagcttc tgaaattgtt
     2461 attatggcgg ctaaaagatc tttggtgcaa gcaaaaaaaa ttacagtgga tttaaataga
     2521 cagactgatt ttatagctag tgcgggtttt atttatacaa gcgatcaaga taaagcttgt
     2581 catgaaattt tgcaagattt tcaaagtgga aaagtcatgg ataggctttt aagcggtgat
     2641 gtgggttttg gaaaaacaga agtcgctatg aatgctattt atccagtagt taaaagtgga
     2701 ttttgcgcat ttttatttgc gcctacgact ttgctttctc atcagcatta taaaacctta
     2761 aaaaagcgtt ttgatccttt tgatataaag gtttttaaac tggatcgctt tacaagtagt
     2821 gcagaaaaaa aacaagtttt acaaaattta aaagaaaata aagcttgtgt agttgtagga
     2881 actcatgcac ttttaagtgt agaatgtgaa aatttagccc ttgttattat tgatgaagag
     2941 cataaatttg gagtgaagca aaaagaaaag cttaaagaaa tcactcaaaa ttcacatatt
     3001 ttatccatgt cagcaacccc tataccaaga agcttaaatc aagctttaag ttctataaaa
     3061 tcttatagtg ttttgcaaat tccaccagaa gatagaatgg atgtaagaac ttttgtcaaa
     3121 gaaaatgatg acgcactttt aaaagaagct atagcaagag agttaagacg tggtgggcaa
     3181 attttttata ttcataatca tattgcaagt atagagcaat gcaaaaaaca tttattagaa
     3241 cttttttcta ctttgcgtat tttgatttta cattctaaaa tcgatgctaa ggtacaagaa
     3301 gaagaaatgt tgaaatttga aaacaaagaa tatgatttgc ttttaagtac ctctatcgta
     3361 gaaagtggga ttgatttacc aaatgcaaat actatcatag tagaaaaaag cgatcgtttt
     3421 ggcatggctg atttgcatca attgcgtgga cgtgtaggaa gaagtgataa gcaaggttat
     3481 tgttattttt taatcgaaga taaaaatgct atcacaaaag atgctttaaa gcgtctagtt
     3541 tctttagaaa gtaattcttt tttaggcgca ggttctgttt tggcttatca tgatcttgaa
     3601 attcgtggcg gtggaaattt attaggcgtg gatcaaagtg gacgtatcga gcaaattgga
     3661 tatagtttat atcttaaaat gttagaagat gaacttaatg ctttaagtaa aaatgaagtg
     3721 gatcaaaaag aaaataaact tgatttaaaa ctcaatgtta atgccttttt aaatagtgag
     3781 cttatcagcg aagatcgctt aagattagaa ctttatagaa gacttagcaa gtgtgagcaa
     3841 gtttatgagg tttatgagat tgaaggtgaa attgaagatc gctttggaaa acttgacatt
     3901 tatactaagc aatttttatc tttgattact attaaaattt tagctttaaa taaatttaaa
     3961 agcattagta actatgagca aaatattcaa tttactgctt taaatgatga aaaagaactc
     4021 atcaaggcaa aaagcaaaga tgatgatgat attttagagg caattttaac gcatttaaga
     4081 aaggcttaaa atggattgga ataaaactta tgcagcaatt tatagagcaa gaaaagatta
     4141 tttaaagcct atttttgaaa tcgatcctat tgctttaaaa gatttagtag gtatggaaag
     4201 tcaaaaaaaa gcactttatg aaaatacttt aaatttcatt caagataagg gagcaaatca
     4261 cgcactttta tggggatcta agggcactgg aaaatcaagt ttaattaaag ctatatttaa
     4321 tgaatttaaa gaacagggct taagacttgt cgaattaaat aaagaagatt tatttgcctt
     4381 agcagatatc atcgatgaaa tcagattaga aaattttaaa ttcatacttt tttgtgatga
     4441 tttttctttt gaaaagggag atgatagtta taaattttta aaacctttac ttgagggaag
     4501 catagaaaaa gccccaaata atgtaattat ttatgcgagt tcaaatcgta ggcatttatt
     4561 aagtgaaagc attactgata atcttgatac gcaaatcaca catacagaac ttcatttaag
     4621 cgatgctgct gaagaaagat taagtttgag tgatagattt ggtttgtggt taagttttta
     4681 tcagggaaat ttagaagagt atttaaagat gatagatttt tattttaaag attattcttg
     4741 tgataaagag cttttgtacg ctaaagctaa agaatttgct actctaagag caagtagaag
     4801 tggtcgtacc gcaaagcaat tttatttagc ttttaaggag aattttaaat gactggagca
     4861 caaattttta ccaagctttt aaatttggat ttaaattatc atgattttga ttggcttgaa
     4921 aatcaaggat tgagtgaatt tgagctttta atttctgtcg ttttaactca aaatacaaat
     4981 tggaaaaatg tcttaaaagc tttagaaaat ttaaaaaaag aaaatattgc aagcttagaa
     5041 caaatcaata ctttatccaa tttagaactt gcaactttaa ttaagcctag cggattttat
     5101 aataccaaaa ctaagcgttt aaaaggtttg gtagaaagta tcataaacac ttatgaaaat
     5161 ttagaaaatt ttaaaacaaa tgcaagcaga gaatggcttt taaatatcaa aggtttaggt
     5221 tttgaaagcg ttgatagtat tttaaactat ctttgcaaaa gagagatttt ggttgtagat
     5281 aattatagtt tgcgtttggc tttttactta ggttatgagt ttgaaaatta tgaagaatta
     5341 agagaatttt ttcaaagtga catagagagt gagcaagaaa atttgtataa aattttagga
     5401 aaaaaatgcg aactttacga actttatcaa atttttcatg ctttgattgt agcttttgca
     5461 aaacagagtt ttaaaggaca aaaattaagc cctaagggtg aagaatggat caaaatttta
     5521 aaggaagatt tatgaaagca aaaggaagtg aacttatacc tgttttaact atagcaggga
     5581 gtgattgtag tggtggagca gggatacaag ccgatcttaa aacctttagt gcacacaatc
     5641 tttttggtat gagtgtggtt ttaagtgtgg tagctgaaaa taccgcaagg gtgatttctg
     5701 tacacgatat acctactcaa agcgtggatg aacaaatgct tgccgtgttt gaagatatag
     5761 tgccaaaggc aactaaaatc ggaataatag gttcttgtga attaatgagc tgtgtagcta
     5821 aaaatttaag cgagtttaaa cctcaaaatg tagttattga tcctgtaatg tttgccaaaa
     5881 atggctatgc tttaatgccg caagaaaatt gtgatttttt caaacaaact ataataaaat
     5941 ttgcagacat tcttactcct aatattcctg aagcagagtt tttatgtggt tttaagatcg
     6001 ctaatgaaga gcagatgata aaagcagcta agcatttatg cagcttgggg gctaaggcag
     6061 ttttacttaa aggcggacat agtgaagcaa atgccaatga tgtgctttat aatggaaaag
     6121 aaatttatat tttaaaaggc gaacgcatag aaactaaaaa tactcacggt acaggttgta
     6181 cgctttcttc ggctattgct agtaatttag ctaaaggcaa ggatttattt cacgctgtta
     6241 gtgaagctaa agagtatgta agaaatgcga tttattattc acttaatctt ggaaaaggtt
     6301 gtggtcctac aaatcatttt ttcaagtttc tagatgaaaa ataaattaga tcttagcctt
     6361 tatttggttg ctactaaggg aaataaaagc gaggagtgtt ttttaaatac tttagaaaat
     6421 gctataaaag gcggagtaag tatcatacaa cttcgtgaaa aagagcttaa tgcaagagaa
     6481 ttttataaac taggcttaaa ggtgcaaaaa ctttgcaagt cttataaaat accttttttg
     6541 attaacgata gggtggatat agctttagcc ttagatgctg atggggtgca tttaggacag
     6601 gaagatttag aagcaaaatt agctagaaag cttttaggag atgaaaaaat cataggctta
     6661 agtcttaaaa agttagaaca acttgagttt atacaaggag taaattatct aggttgtgga
     6721 gctattaagg caacgcctac taaagaaagt tcgcttttaa gccttgagct tttaagtcaa
     6781 atttgtgata aaagccctat aggggttgta gccataggtg ggattgacaa agaagcactt
     6841 gttgagttaa agggtataaa tttaagcggt gtggctgtgg ttagggcgat catggatgct
     6901 aaagatgctt ttttggcagc taaagagcta aagcgtaaaa tctatgaaaa tttatctctt
     6961 aaatgaaact ccttttgaag gggtggaaaa tcttatttta aatgagattg ttttttatga
     7021 ttttagtgtg gatttgagtt tgtatgatgc tttaatctgc acttcaaaaa atgctttaaa
     7081 agctttacaa catgcaaaaa tcactttaaa tttcaaactc aatttatacg ctgtgggaca
     7141 aagtacagct caatacgcta aaaatttagg ttttaaaaag attaaaattc catcaaaggc
     7201 ttatggaaaa gatctttttc ttgaatttaa agaggagtta aaaatgcaaa aatgtttgta
     7261 tttaagggct aaaaatattg tttcaacttt aaatttggat cttaaaaatg taggtgtgga
     7321 tttagatgaa atgattgttt atgaaaatgt ttttaaaaaa ggcgacaaaa agcttatcta
     7381 tcctgctatt tttatattca cctctccttt aagtgtagaa aattttttaa aattttatag
     7441 cttaaaagaa gaagataagg ttgtagttat agggcaaagc acagcaaaga agcttttaaa
     7501 ttttaaaaat ctttatatat gcgcaaatca aagtctttta gactgtgtta agctcgctaa
     7561 gactttggt
//
LOCUS       DARGED010000078         7476 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.078, whole genome shotgun sequence.
ACCESSION   DARGED010000078 DARGED010000000
VERSION     DARGED010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7476
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.078"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1350
                     /locus_tag="SFZ84_001256"
     CDS             <1..1350
                     /locus_tag="SFZ84_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8203371.1"
                     /translation="YLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVVYTDLKKPI
                     LVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFGYKENVKSF
                     VLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAGAVVFKADD
                     ANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKAGNISKERI
                     RYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNETLRNSNEK
                     LIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDSYHMGLDLA
                     SVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDLDEMINKQS
                     IIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGKKIILGKN"
     gene            1350..2234
                     /locus_tag="SFZ84_001257"
     CDS             1350..2234
                     /locus_tag="SFZ84_001257"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG8203372.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            2273..2674
                     /locus_tag="SFZ84_001258"
     CDS             2273..2674
                     /locus_tag="SFZ84_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG8203373.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            2683..3561
                     /locus_tag="SFZ84_001259"
     CDS             2683..3561
                     /locus_tag="SFZ84_001259"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8203374.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            3586..3843
                     /locus_tag="SFZ84_001260"
     CDS             3586..3843
                     /locus_tag="SFZ84_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG8203375.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            3830..6445
                     /gene="infB"
                     /locus_tag="SFZ84_001261"
     CDS             3830..6445
                     /gene="infB"
                     /locus_tag="SFZ84_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG8203376.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            6442..6804
                     /gene="rbfA"
                     /locus_tag="SFZ84_001262"
     CDS             6442..6804
                     /gene="rbfA"
                     /locus_tag="SFZ84_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG8203377.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            6794..7216
                     /gene="rimP"
                     /locus_tag="SFZ84_001263"
     CDS             6794..7216
                     /gene="rimP"
                     /locus_tag="SFZ84_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG8203378.1"
                     /translation="MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW"
     gene            7321..>7476
                     /locus_tag="SFZ84_001264"
     CDS             7321..>7476
                     /locus_tag="SFZ84_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203379.1"
                     /translation="MNIAEFHFSNGNKTQAQIEDSNEKIFKIFLEKRLKNYNQYIKAT
                     KDIIKECK"
BASE COUNT         2867 a          871 c         1470 g         2268 t
ORIGIN      
        1 tatttatctg ttttaatttt agttttaata gcaattttga ttttttttat ttcaagatta
       61 agtatttttg aaaaaaatcc tcctcaaatt ttaatgccag atgttgtata tactgatctt
      121 aaaaaaccta ttttagtgca tattaaagat gatgaaagtt ctatcaaaaa tgtacaaatt
      181 atattgcata aagacgacaa tactagtgca atggttatag cagatgaaaa gatttctaat
      241 ttaaaagata ttaccttaca agttgctttg ccaaaatttg gttacaaaga aaatgtaaaa
      301 tcttttgttt tggaggtgat agctaaagat tctagttttt ggaatttttt tagtggcaat
      361 gaagcaagaa aacaaattgc ggtattagta gataatacgg ctccaaaaat caatatcata
      421 agcaattctt accaaatcga gcaaggcggt gccggggcag ttgtttttaa ggctgatgat
      481 gctaatttag ataaggtgta tatagaaaca aataaaggta aaatctttaa agccacacct
      541 tatgtaaaag aaggatatta tgcggctttg attgcttggg atgcaagaga tgaggaattt
      601 cgtgcatttg ttatcgctac ggataaagcg ggcaatattt caaaagaacg tataaggtat
      661 tattttgtta atcgtaaata tcgtgtttca aatatcaatc taacggataa atttttagat
      721 ggaaagattg agaatttagc aaatcagtac gctccaaaag ataataatct caatcgttat
      781 gaaaaattta agtttgtcaa tgaaacttta agaaatagca atgaaaaact tatccatgaa
      841 atcacttcaa aagtacctga ggaaaaaatt gataattttg atttgaattt atttttacct
      901 cttaaaaatg gtatgaaagt agcggatttt gctgatcata ggtattattc ttataatggg
      961 caatttgtga gtgattctta tcatatgggg cttgatctag caagcgtagc acaagctcct
     1021 atcataagta ataacgcagg caaggttgtt tttgctgctg aaaatggaat ttatggttta
     1081 aatttaattg tttatcatgg ttttggagta tatagtcttt atgggcactg ttcttctaaa
     1141 aatgttgatt tagatgaaat gattaataaa caaagcatta taggcaaaac aggaacaagt
     1201 ggtttagcct taggcgatca tttgcatttt ggagttttgg ttcaaggggt tgaaacgcgt
     1261 cctgaacaat ggcaagataa aaaatggata gaaaataata tttacaatgt tttaaatgat
     1321 ggtaaaaaga taattttagg aaaaaattaa tgaaacaatt aactttagca aaaactgtca
     1381 aaggcgtagg tataggactt cataagggtg aacccataga aattacttta gagcctttag
     1441 aagcaaatag tggtatagta ttttttagaa gtgatcttaa tgcaagctat aaggcaagtc
     1501 ctgaaaatgt gatcaatact caaatggcaa ctgttttagg agatgaaaga gggtttattt
     1561 ctacaataga gcatttaatg agtgcgatta atgcttatgg aatcgataat gtacgcatag
     1621 ttttaaatgc aaatgaagct cctgttatgg atggatcaag tattagtttt tgtatgatgc
     1681 ttgatgaagc aggggtaaaa gaacttgatg cgcctaaaaa aattatggta attaaaaagc
     1741 ctatagaagt aagagatggt aataaatttg tgcgtttaac tcctactaaa gaaccccgta
     1801 ttaattacac aattaaattt gacaatgctg ttataggtga acaaagttac aattttgaat
     1861 tcagcaaaaa aaattatata gaaaacatag caagagctag aacttttggt tttttaaaag
     1921 atgttcaagc tcttaggagt atgaatttag cactaggtgg aagtttagaa aatactatag
     1981 tggtagatga aaatcgtatt ttaaatcctg aaggtttgcg tttcaaagat gagtttgtaa
     2041 gacataaaat tttagatgca attggagatt taaccttact tggatatcgt gtttttgggg
     2101 attatacttc atatgctggg agtcatcatt taaatcattt actcactaaa gaagttttaa
     2161 aagataaaga tgcttatgaa attgtaagcc ttgaaaaaac aacccaaaaa gcttatgaaa
     2221 aggtatttgc ataaaaactt ctcttttact taatacttta tctaagcctt taatgatcgg
     2281 aatttatcaa gatgataaac ttataaaaac ttataaaagt gaagaaaaag caagcgaatt
     2341 tttaccaaaa attttagatg aattgcttaa agaatatgat tttacaagtt taatctatgc
     2401 taatggtcca ggttcttata tggggattaa aatttcttat gtaagtttga gtactttaag
     2461 tatagtaaaa aatattcctt tatttgcggt gagtgctttt gaattaaatg gctataaacc
     2521 cataagtgca aataaaaatt tttgttttgt atataaggaa ggtgaaattt gtttagagca
     2581 aaatatccca gcagagtttt ttttaccaaa aaatttacaa gagcttaaac taaataatga
     2641 taatcttccc ttttattttt tagatgcaat ttaggatgaa atttgaaaat tttagttcca
     2701 gctacgagtg cgaatttagg gccaggtttt gattgtttag gacttagttt aaagcttttt
     2761 aatgaaactc aaatccaaaa atcaggtgtt tttagcatta gtattggagg cgagggaagt
     2821 gataatattt ttcttaaaaa aaacaatata tttgtaaata ttttttatga aatttatgaa
     2881 aaactaagcg gaaaaaaaga taattttcgt tttatttttc aaaataacat tcctctttca
     2941 agaggattag gaagctcttc agctgtgatt gttggagcta ttgccagtgc ttattatatg
     3001 agtggattta aggtagaaaa agaacgtatt ttagatgaag ctttaattta tgaaaaccat
     3061 ccagataata tcgctccagc tactcttggt ggttttgtgt gttctttggt tgaaaaaaat
     3121 aaagtttata gtatcaaaaa agagattgat aaagatttag ctgctgtggt tgtgatccca
     3181 aatttggcaa tgagcacgga acaatcacgc caagctttgg ccaaaaattt aagttttaat
     3241 gatgcggttt tcaacctttc tcatgcttca tttttaaccg cttgtttttt ggagaaaaaa
     3301 tatgaatttt taaaatttgc aagtcaagat aagctccatg aaatcaatcg tatgaaaaac
     3361 ttacccgagc tttttgaagt gcaaaaattt gccttagaaa ataaagcttt aatgagcaca
     3421 ctttcaggtt cgggatcgag ctttttttct ttagctttta aagatgatgc tttagcttta
     3481 gcaaagaaaa tacaaacaaa atttaaagat tttcgtgtgc aatatttaga atttgatgat
     3541 aatggctttg aaatttgcta aaaaatataa aaaaaagata taattttgaa aaaacatata
     3601 ccaattagaa tgtgcatagt gtgtaaaaac cgctttgagc aaaatatgtt atttagattt
     3661 aaagttgttt taggagatat tgtgcctaaa gcagaacatg gaagaagcgg atatttatgt
     3721 caaaattgta ttgagagaga agataaagtc ttacaaaaag cattttctaa aatatgtaaa
     3781 aatttaaata ctaaaattac tcagcaagga cttaaggaga tatttttaaa tggcaaagat
     3841 tagaattcat gaaatcgcaa aagaattagg ttatgatagt aaggaaatta ttgaaaaggc
     3901 aaatgaatta ggacttggaa ttaaaacagc atcaaatgct gtagaacctg agattgcggc
     3961 agctatttat gagtatatac aaacaagaga aattccagaa gcttttaaga aaaatatcaa
     4021 aactcctaca gcaaaaaagc ctaaaaaaga aaatataaaa gaacaagaaa agctaaatga
     4081 atctgaaaaa aaagaaccta aaaaagaaga aaagcttaaa caagaagtta aaaaagaaga
     4141 attaaaaatt gaaaaagaaa atgcaaaaga ggaagaaaaa caagaaatta ttgatgctca
     4201 taagccacaa agccttgcta gtgcaacttt agccaaaaga cgcggacttg ttattgttaa
     4261 aaagaaaaaa gacgaagaag aaattcaagt taaaaaagaa gaagtaaaaa attcaaatga
     4321 tatatctatc aataatgaag agcgcttaag tttaaaaact atgttttcaa atgctgatga
     4381 gagtttaaag aaaaagaaaa aagaaaaaaa atcttttgtt gcgagtaaaa aagaaagtac
     4441 cgaaaaaatg aattttttag atgaacatga ttttggtgat atttctttag atgatgaaga
     4501 tgaggtagta ttacctgatt ttagtgtaaa agaacaagaa aaaccacaaa atatcaataa
     4561 aaaacaacct aattttataa gacaagctgt tggaaattct gcgggttttg ggcttgaagg
     4621 tggaattcaa agaagaagtc gtaaaaaacc atctaaaaag attgaaaaaa aggaagtaga
     4681 agaagtaggt agcgttgcta tttctaaaga aattcgtgtg tatgaattcg ctgataagat
     4741 aggaaaaagc actagtgaag tgatttcaaa acttttcatg cttggaatga tgacaacaaa
     4801 aaatgatttc ttagatgaag atgcgattga aattttggct gctgaatttg gtatagagat
     4861 caatatcatt aacgaggctg atgagtttga ttatgtaaaa gactatgaag aagagactga
     4921 tgaaaaagat ttagtgacta gagcgcctgt gattaccatc atggggcatg ttgatcatgg
     4981 taaaacttct ttgttagatt atatcagaaa atcacgcgtt gcaagtggag aagcaggggg
     5041 tattacccaa cacgtgggtg cttatatggt agaaaaaaac gggcgtaaaa ttacttttat
     5101 cgatactcca ggtcacgaag cttttactgc tatgcgtgca aggggtgcaa gtatcactga
     5161 tattgtaatc atcgttgtag ccgcagatga tggggtaaaa ccacaaacca aagaagcgat
     5221 aaatcatgct aaagcagcag gtgtgcctat tattatcgct attaacaaaa tggataaaga
     5281 agcggcaaat cccgatatgg taaaaactca acttgcagaa atggaaatca tgccagtaga
     5341 atggggcgga tcttatgaat ttgtaggagt ttcggctaaa acaggaatgg ggattgaaga
     5401 tttacttgag atcgtgcttt tacaagctga tattttagaa cttaaagcca atccaaaaag
     5461 ttttgctaaa gcaagcatta tagaaagttc tgtgcaaaaa gggcgtggtg cggtggctac
     5521 tatcatcgtg caaaatggaa cacttactgt aggaagtact gtggttgcag gcgaggctta
     5581 tggaaaagtg cgtgcgatga gcgatgatca aggtaaagcc ttaaaagaaa tcaaaccagg
     5641 tgaatgtggg gttatcgtag gacttagtga agtagcagat gcaggtgaaa ttttaatcgc
     5701 agtaaaaaca gataaagaag caagagaata cgctaataaa cgccacgaat acaaccgcca
     5761 aaaagaactt agcaaatcca ctaaagttag cattgatgag cttggagcta agatcaaaga
     5821 aggcaatcta aaagccttgc ctgttatttt aaaagctgat gtacaaggat ctttagaagc
     5881 cttaaaagca agtttagaaa aacttagaaa tgatgagatt aaagtgaata tcattcatag
     5941 cggggtagga gggatcacac aaagtgatat agagcttgca agtgcgagtg aaaactctat
     6001 agtactaggt tttaacatac gcccaacagg ggaagttaaa gagcgtgcta aggataaagg
     6061 cgtagaaatt aaaacctata atgtgattta taatctttta gatgatgtaa aagccttgct
     6121 tggtggtatg atgagtccga ttatttctga agagcaatta ggacaagcag agattagaca
     6181 agtgatcaat gtaccaaaaa tcggacaaat tgcaggttgt atggtaactg aaggggtgat
     6241 taaccgtgga gctaaaattc gtcttatccg tgatggagtt gtggtttatg aaggcaatgt
     6301 gagttcactc aaacgcttta aagatgatgc taaagaagtg gcaaaaggct atgaatgtgg
     6361 cgtaggtata gaagggtgtg atgatatgag agtgggtgat tatatagaaa gctataaaga
     6421 agtagaggaa caagcaagtc tatgaaccca agtgagatta aaaaactacg cactgaaagt
     6481 atcttaaaag agctgatccc tgaagcttta gcaaatttag atgatgaaaa tttgaaaaat
     6541 ttgtgtgtag tggatgtaga gtgtaaaaaa ggcagatacg atgcttttgt gtatcttgat
     6601 aagatgtttt ttaatgttca tgagcaagaa aaaattttat cttctttaaa aaaggcaagt
     6661 agagctttgc aaaattactg catgagtgag cagggctggt ataggtgtcc gaattttcat
     6721 tttaaatttg atgataggct tgagtatcaa aaccatatgg atgcactttt tgaaaaaata
     6781 aaaaaggata aaaatgaatc ttgaagccct ttgcaaagaa gcaggactta gtttttatga
     6841 tgatgagcta gtaagtgaaa atggcagaaa aatttataga atttatgtac aaaaagaagg
     6901 cggggtaaat cttgatgatt gtgcaaggct tagtgaaatt ttatcgccta tttttgatgt
     6961 agagtcacct gtaaatggag agtatttttt agaagtatct tcaccaggac ttgaaagaaa
     7021 acttagcaag atagaacatt ttgcaaaaag tataggtgaa cttgtgaaga tcacaaccaa
     7081 tgaaaaagaa aaattcgaag caaaaatcat tgctgtagat gatgaaaata tcactttaga
     7141 aaatttagaa aataaagaaa aaactactat aaattttaat gatataaaaa aagctagaac
     7201 ctttgtggag tggtgaaaat ttagaaatat gattttttaa ttacctttta tataattaaa
     7261 tttaaatata aacacaaaaa actataaaat tttatatttg taggttaaaa ggaaaatagt
     7321 atgaatattg ctgaatttca tttttcaaat ggaaataaaa cacaagcaca aatagaagat
     7381 tcaaatgaga aaatttttaa gatatttttg gaaaaaagac taaaaaatta caatcaatat
     7441 atcaaagcta caaaagacat aattaaagaa tgtaaa
//
LOCUS       DARGED010000079         7425 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.079, whole genome shotgun sequence.
ACCESSION   DARGED010000079 DARGED010000000
VERSION     DARGED010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7425
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.079"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..2841)
                     /locus_tag="SFZ84_001265"
     CDS             complement(<1..2841)
                     /locus_tag="SFZ84_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8203380.1"
                     /translation="MLKAYLENIKDISTNDKEHTHRTALQNLLQAIKDNQDKQNKISI
                     KQEPNNDKEGRGAPDFLITKDFLTLGYIENKRVNANLDNIITSDQILKYTKLSPNIIL
                     TDYLRFILLSLNDKNEIIICKEVKICSLDEIKSIVKNQSLLDTKTQELNELFSIFFSK
                     IPNPINSALDFANHLSLRTRILKDELLLSSKNETLLSLFNTFKETLYKELSYEEFCDS
                     FAQTLTYSLFLAKLNNDTAKEIDLNNAKKFIPKSFPLIRSMGGFLDDSFENLENIKWL
                     LEEIINIINHIDITSIIKELNKTSEKDLFNRSILSTHKDPYLHFYETFLASYDPKLRE
                     VRGVYYTPAPVVIFIINAIDEALKQDFNHKKGLSEALDKNITLLDFATGTGTFLLEAF
                     RKALEPISKNSVNYNPKALIDKFCGFEFLIAPYTIAHLKISQSFKEEFNSPLNDDESL
                     KIALTNTLYFKSISKEQNDQNTLFTLIDLTREFKKAQKIKEEQILIITGNPPYSGASS
                     NKGLYEDEIKISYGLEPSKANLNNEQKKWISSYFKEKSKQNTSTFKAIYEKHKLENEK
                     NPKVMLDDYVKFIRFAQSKIDSQESGIFAFISNNSFLDNPTFRGMRYSLMQSFDKIYI
                     LNLHGDTRKKEKAPDGSKDDNVFDIMQGVSINIFIKQNSKAKNTNIYYHDLYGKRKDK
                     YEFLYENDLNSIKWTLVKNNEPFYLFLPQNNDLLEEYNKGISVKDIFMLSSVGIASSK
                     DAILISTNNKKLEQQVYNFYNEFDKKYIKEIAYKPFDTQKIYYDIKKVERPRIDIMEH
                     FLGYENIGLIYDRGTNLKEISNLFISSKVIDKHLVGANSYVSPLYLYPTTRSKKFLKK
                     ENPNFNEENFTSKIENFKESFRTFIDELYKEKFSPEDILGYIYAVLFHKIYREKYLDF
                     LKIDFPKIPFTKDKNTFKNLSKLGLKLVNLHLL"
     gene            complement(2851..3846)
                     /gene="pyrC"
                     /locus_tag="SFZ84_001266"
     CDS             complement(2851..3846)
                     /gene="pyrC"
                     /locus_tag="SFZ84_001266"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG8203381.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRILKVCKDENFTPLMTLFFKNYDEKFLYSAKGEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDREANFAKIYEKLAKNFPKLK
                     IVMEHITTKVLCDLLKDYENLYATITLHHLMITLDDVVGGKMDPHLFCKPIAKRYEDK
                     DALCELAFSGYEKAMFGSDSAPHPLHTKECCGCAAGVFSAPVILPVLVELFEKHSNET
                     NLQKFISDNACKIHNLKFEKDKIVILEKQEWQVAQKYGDVVPFMAGKTLNFKVAN"
     gene            complement(3856..4083)
                     /locus_tag="SFZ84_001267"
     CDS             complement(3856..4083)
                     /locus_tag="SFZ84_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG8203382.1"
                     /translation="MKFEKLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            complement(4080..4436)
                     /locus_tag="SFZ84_001268"
     CDS             complement(4080..4436)
                     /locus_tag="SFZ84_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG8203383.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASTAVFFSV
                     LLALFVWSFILYSIYL"
     gene            complement(4433..5971)
                     /gene="eptC"
                     /locus_tag="SFZ84_001269"
     CDS             complement(4433..5971)
                     /gene="eptC"
                     /locus_tag="SFZ84_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEG8203384.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFAIVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKDYESSLFYLSDHGESLGENGIYLHGMPYAIAPSY
                     QTRIPAIFWSNDEKLMNLAKEHKDLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            6089..6847
                     /gene="xth"
                     /locus_tag="SFZ84_001270"
     CDS             6089..6847
                     /gene="xth"
                     /locus_tag="SFZ84_001270"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG8203385.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            complement(6866..>7425)
                     /locus_tag="SFZ84_001271"
     CDS             complement(6866..>7425)
                     /locus_tag="SFZ84_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203386.1"
                     /translation="RILKISSIILNTAFEIANESMAYAKDLCLGVIKGTRDGIVLAME
                     KFKASLTYANFEEDVSLKSKELIGIEDDFIALLKKEIQLQNDPCKSIVENLLEHELDN
                     LFAKFRRLAGESREQLILVLNDIKKNPKINDFNKLTQRKLNRFKQEIFELEKIASEKY
                     KDLNSKKAKKLGVRLWEKAKKFVKK"
BASE COUNT         2539 a         1073 c          979 g         2834 t
ORIGIN      
        1 taataaatgt aaatttacaa gttttaagcc tagtttgctt aaatttttaa aagtattttt
       61 atcttttgta aaaggaattt ttggaaaatc aatttttaaa aaatcaagat atttttctct
      121 ataaatttta tgaaaaagca ccgcataaat atagcctagt atgtcttctg gtgagaattt
      181 ttctttataa agctcatcta tgaaagttct aaagctttct ttgaaatttt ctatttttga
      241 ggtaaaattt tcttcgttaa aatttggatt ttcttttttt aggaattttt tacttctagt
      301 tgtaggataa agataaagtg gagaaacata gctatttgct ccgactaaat gtttatctat
      361 aacttttgag cttataaata aatttgaaat ttcttttaga ttagtgcctc tatcataaat
      421 caaacctatg ttttcatacc ccaaaaaatg ttccattatg tcaattcttg gtctttccac
      481 tttttttata tcataataaa ttttttgcgt atcaaaaggt ttatatgcta tttctttaat
      541 gtatttttta tcaaattcat tataaaaatt ataaacttgt tgttctaatt ttttattatt
      601 cgttgagatt aatatagcat ccttagagct tgcaattcct acgcttgaaa gcataaaaat
      661 atcttttacg cttatgccct tgttgtattc ttctaataaa tcattatttt gtggtaagaa
      721 aagataaaaa ggctcgttgt tttttaccaa agtccatttt atagaattta agtcattttc
      781 atataaaaat tcgtatttat cctttctttt gccgtataaa tcatgataat aaatgtttgt
      841 atttttagct tttgaatttt gttttataaa gatatttatg ctcacacctt gcatgatatc
      901 aaagacatta tcatctttgc ttccatcagg agctttttct ttttttctag tatcgccgtg
      961 taaattaagt atataaattt tatcaaagct ttgcattaaa gaatatctca tacctctaaa
     1021 ggtaggatta tctaaaaagc tattatttga aataaaagca aaaattccgc tttcttgaga
     1081 gtcgatttta ctttgggcaa agcgtatgaa ttttacatag tcatcaagca ttacttttgg
     1141 atttttttca ttttctagtt tgtgtttttc atatatggct ttaaaagtac ttgtgttttg
     1201 tttggatttt tctttaaaat acgagcttat ccactttttt tgttcattat taagatttgc
     1261 tttgcttggt tctaaaccat agcttatttt gatctcatct tcgtataagc ctttgttgct
     1321 acttgctcca ctataaggcg gattgcctgt gatgattaga atttgttctt cttttatttt
     1381 ttgtgctttt ttaaattctc ttgttagatc aatgagagta aaaagcgtgt tttgatcatt
     1441 ttgttctttg gatatgcttt taaaatataa agtatttgtt agtgctattt taagactttc
     1501 atcatcgttt aatggagagt taaattcttc tttaaaactt tgagaaattt ttaaatgtgc
     1561 tatggtgtaa ggggctatta aaaattcaaa accacaaaat ttgtctatca aagcttttgg
     1621 attgtaatta acgctatttt tgcttatagg ttctaaagct tttctaaaag cttcaagtaa
     1681 aaaggtgcca gtgcctgtgg caaaatcaag taaggttata tttttatcta aagcttcgct
     1741 taagcctttt ttgtgattga aatcttgttt taaagcttca tctatggcat ttatgatgaa
     1801 aattactaca ggcgcaggag tataatacac tccccttact tctctaagct ttggatcata
     1861 acttgctaaa aatgtttcat aaaagtgcaa ataaggatct ttgtgagtag ataaaatact
     1921 acgattaaat agatcttttt cactagtttt gtttagttct tttataatac ttgtaatgtc
     1981 tatgtgattt ataatgttta tgatttcttc taaaagccat tttatatttt ctaaattttc
     2041 aaaactatca tctaaaaatc cacccataga acggattaat ggaaatgatt ttggtatgaa
     2101 ttttttagca ttgtttagat ctatttcttt tgcggtatcg ttatttaatt ttgctaagaa
     2161 taagctataa gttaaagttt gtgcaaaaga atcgcaaaat tcttcatagg ataattcttt
     2221 ataaagtgtt tctttgaagg tgttaaataa acttaataaa gtttcatttt tgcttgataa
     2281 taaaagctca tcttttaaaa ttcttgttct taggcttaga tggtttgcaa aatctaaagc
     2341 tgaatttatg ggatttggga ttttagaaaa aaatatgcta aaaagttcgt ttaactcttg
     2401 tgttttagta tctagtaaag attgattttt aacaatgctt ttaatctcat caagagagca
     2461 aatttttact tctttacaaa tgataatttc attcttatca tttaaactta ataatataaa
     2521 tcttaaataa tctgtgagaa tgatatttgg gcttaatttt gtgtatttta aaatttgatc
     2581 acttgttatg atgttatcaa gatttgcatt tactcttttg ttttctatgt aacctagtgt
     2641 taaaaaatct tttgtaatca aaaaatccgg agcacctcta ccttctttgt cgttatttgg
     2701 ttcttgtttg atagagattt tattttgctt gtcttgatta tcttttatag cttgcaataa
     2761 attttgcaaa gctgttctat gggtatgttc tttatcgttt gtagaaatat cttttatgtt
     2821 ttctagataa gcttttagca ttaatttcct ttaatttgcg actttgaaat ttaaagtttt
     2881 ccctgccata aatggcacta catcgccgta tttttgcgct acttgccatt cttgtttttc
     2941 taagatgacg attttatctt tttcaaattt aagattatgg attttgcaag cattatctga
     3001 aataaatttt tgtaaatttg tttcatttga atgtttttca aaaagttcaa ctaatacagg
     3061 taaaatcacc ggtgcgctaa aaactccagc cgcacaacca caacattctt tagtgtgcaa
     3121 tggatgaggc gcgctatcgc ttccaaacat agccttttca tagccactaa aagcaagctc
     3181 acataaagcg tctttatctt catagcgttt tgcaataggc ttgcaaaata aatgtggatc
     3241 cattttacca cccactacat catcaagcgt tatcattaaa tgatgcaaag tgatagttgc
     3301 gtataaattt tcataatctt ttaataaatc acacaaaacc ttagtggtaa tatgctccat
     3361 tacaattttt aattttggaa agtttttagc taatttttca tatattttgg caaaatttgc
     3421 ctctctatcc atgacaaaat cattggtttc tccatgcact aacaaaggaa tatttaaatc
     3481 actcatagcc tctaaagtag gttttaaata ctctatatca aaacttgaaa ctccaccatt
     3541 tgaatttgtt gtaattcctg ctggataaag cttaatgcca aaaatttcac ctttagcact
     3601 gtaaagaaat ttctcatcat aatttttaaa aaaaagtgtc attaaaggag tgaaattttc
     3661 atctttacaa accttaagga tacgcatttt ataagctttt agatcttcta aattgcaaag
     3721 tggagggatt aaatttggca taatcacagc tgcacaaaaa tctcttgcac tcaaaggtgc
     3781 aataagttct aacatttgat tatctcttaa atgcaaatgc atatctaaag gatttttaag
     3841 tttcattttt atctcctata tttttagctg ataaaatcca tttttaagac gcttaaaaag
     3901 ctttttttct tctaaaaatt taaaagtagc gatgatagtg ggcttgcttt ggtttaattt
     3961 ttcttcaagc tcactgattt taatcataat aaaaccattt tcatcggcat tttcgcataa
     4021 aaattttaac aattcaaaac gcttttttcc caaaatttct tgtattaatt tttcaaattt
     4081 cataagtaaa tgctatataa aataaaactc caaacaaaaa gagctaaaag cacactaaaa
     4141 aacactgccg tactcgcaca atctttagcg atttttgctt tttcatgcca ttcatttgta
     4201 atcaaatcaa cacaagcttc aatagccgaa tttaaagcct ctataattaa aataagcatt
     4261 aaaacactta ccaataataa atgctccaaa aaactaactt ttaagaaaaa actaaaaact
     4321 atcgcaggga taataataca aagttcaatt ctaaacgcca tttcattttt aaataaagca
     4381 aaaatccctt ctaaagcata tcttgcatta tttaaaaaat gatatttagg cttcatggat
     4441 ttgccttaag tttaggattt aataaatcat attctggctc ataaacactt gtttttacat
     4501 caaaatatcc taaaagagta ctaaaaagat tatcttgaga aagttttaaa tctttatgct
     4561 ctttagctaa attcattaat ttttcatcat tgctccaaaa aatagcagga atacgggttt
     4621 gataacttgg cgctatagca taaggcatac catgaagata aataccattt tcacccaaac
     4681 tttcaccatg atctgaaaga taaaacaaag aactttcata atctttttgc tcttttaata
     4741 gttttataat ctcacttaaa agatagtctg tataaagcaa agtattatca taagtgttga
     4801 ttaaagcctc gctatcacat tttgaaagtt cattagtatc acaagttgga gtaaattttt
     4861 taaattcgct tggatagcgt ttataataag ttggcccatg agaaccttgc aaatgaagaa
     4921 ctattatatt ttgatcactt aaatgattta atttttcttt aaaaggggcg agtaaatttt
     4981 catccaaatc actagaaagc ttttgcttat aagctaatct atcacaaacc cctttacaac
     5041 caccagaatt attatcaaac catgcagtat ctacacctgt tttataaagc acatccatcg
     5101 cattttcttg aaattctgaa cttgaataat tttcacgctt agaaatagaa aacatacaag
     5161 gtaaacttac cgctgttgct gttccacatg atgaaaaatt atcaaaaaac actacattat
     5221 cttttttggt ataaaaattg gtatcatttt tagcatatcc acccaaagag taatttgccg
     5281 ctctagcggt ttcacccact accaaaacta aaagtttttt agtgtgattg ttttctctat
     5341 aagcatcatt agctatagtt ttaaattctg gcttagcttt tacaaaacga acataatagc
     5401 gatatacggc ataaatttga taaaaaggag tattatacat tcttatttca ttatagtttc
     5461 taaaaaaagg caagaaagtt ttacttaaag ggattaaaac cgcacaaaca acaatcaaac
     5521 ctgatattat attgataatt ttaattttta gatgggattt aaaactacca taataatcaa
     5581 tttttacttt aacaacataa aaaactaaca ataaagccaa aacaacaaat aagattaatt
     5641 ttaaatttaa caaatctttt acttctttga tatctgtttg aacaacattt tgtatcatat
     5701 cagaatctat aagcacccca taaaaactaa taaagtaaac acttaaaaaa gatgatatta
     5761 taaataatat agaaaaaaat ttagtaaaaa actttataaa aagcaaagag caaatcacgt
     5821 gaacaatggc aaaataggcc acaataaaaa caaaagttat aaaccagttt tgtgtatttt
     5881 tttcatacac aaaataaaat aaattaaaat tcaacaatac aatcatcaaa gaattaaaaa
     5941 aagtaaactg aagccaagtt aatctaagca tataaatccc acctccaaat ttaagctttt
     6001 aattttattg aattttttta aatggattgt agtttgaaat ctttttatgt tatgatttac
     6061 acttttaatg aaaattttaa ggaaaataat gaaactactt tcatggaatg tcaatggctt
     6121 aagagctatt tgtgataaaa atgcacttga ttggatagca caagaacaaa ttgattttat
     6181 aggttttcaa gaaatcaaag cacatgaaga taaatttcct aaaaaaattt atgaatatcc
     6241 ttttaaacac atgtatttta attctgctaa aagagcgggg tattctgggg taatgagtct
     6301 ttgtaatttt aatagcgaag taaaaaaatg cgaatttttt gatgatgaag aaggtagggt
     6361 tttagaacac cgctttaaaa atattgcact ttttaatatc tattttccaa atggtcaaaa
     6421 agatgaagag cgtttaaatt ttaagatgaa attttatgca gattttttag tgtatttgga
     6481 taagctttta aaggatggat ttgaaattat tatttgtggt gatgtcaata ccgctcataa
     6541 agaaatcgat cttactcatc caaaagccaa tgccaacact tcaggttttt tacctataga
     6601 aagagcttgg attgatgatt tgctaaaact tggttttata gatactttta gagaaattaa
     6661 tggtgaaatc aaagaaaaat actcgtggtg gagctataga atgaaagcaa gagaaagaaa
     6721 tgtaggctgg aggattgatt attttttcat ttcaaagggt ttaaaagata aacttaaaaa
     6781 cgctttcata agagatgata tttttggctc tgatcacgca cctgtaggta tagaaataga
     6841 tatttaatat cccaaaaatg ggatattatt ttttaacgaa tttttttgct ttttcccaaa
     6901 gtcttacacc gagcttttta gcttttttgg aatttaaatc tttgtatttt tcactagcaa
     6961 ttttttctaa ttcaaaaatt tcttgtttaa aacgatttaa ttttctttga gtaagtttgt
     7021 taaaatcatt aatctttgga tttttcttaa tatcatttaa aactaatatt agttgctctc
     7081 tgctttcacc tgcaagacgt ctaaatttag caaaaagatt atcaagttca tgttctagca
     7141 aattctcaac tatactctta caaggatcat tttgtaattg aatctctttt tttaaaagag
     7201 caataaaatc atcttctata cctattagtt ctttgctttt taaactaaca tcttcttcaa
     7261 aatttgcata agttaatgaa gctttaaatt tttccattgc caaaacaata ccatcccttg
     7321 tgcctttaat cacgcctaaa caaagatctt ttgcataagc catagattca ttagctattt
     7381 caaaagcggt atttaaaata atacttgaaa tttttaaaat tcttt
//
LOCUS       DARGED010000080         7352 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.080, whole genome shotgun sequence.
ACCESSION   DARGED010000080 DARGED010000000
VERSION     DARGED010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.080"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..211)
                     /locus_tag="SFZ84_001272"
     CDS             complement(<1..211)
                     /locus_tag="SFZ84_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG8203387.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGI"
     gene            complement(215..1465)
                     /gene="mtaB"
                     /locus_tag="SFZ84_001273"
     CDS             complement(215..1465)
                     /gene="mtaB"
                     /locus_tag="SFZ84_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG8203388.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(1462..3033)
                     /locus_tag="SFZ84_001274"
     CDS             complement(1462..3033)
                     /locus_tag="SFZ84_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG8203389.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLRGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSIENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYSKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
     gene            complement(3030..4085)
                     /locus_tag="SFZ84_001275"
     CDS             complement(3030..4085)
                     /locus_tag="SFZ84_001275"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG8203390.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(4131..5531)
                     /locus_tag="SFZ84_001276"
     CDS             complement(4131..5531)
                     /locus_tag="SFZ84_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG8203391.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIISKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            5561..6682
                     /gene="tgt"
                     /locus_tag="SFZ84_001277"
     CDS             5561..6682
                     /gene="tgt"
                     /locus_tag="SFZ84_001277"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG8203392.1"
                     /translation="MEFELKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDPTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            6684..>7352
                     /locus_tag="SFZ84_001278"
     CDS             6684..>7352
                     /locus_tag="SFZ84_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8203393.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDGEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLAR
                     IDTLYTLTNAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLI"
BASE COUNT         2576 a         1221 c          874 g         2681 t
ORIGIN      
        1 ctatgccatc ttttataatt acgtaatttt caccttctgc cttaagccaa atttcgtctt
       61 tatcaatcac agctttttgg attaaatttt ggcttaatag actttgataa agattttcat
      121 ctatatattt aggttcattt ttaaaatata aaattcccaa aagcatacat aaaaccataa
      181 aagatgctaa aattatcttt ttatttttca ttatctagcc ttttaaattt gtaaagttag
      241 acttttcttg tacttcatat tcagatataa cgatccattc tttagctata tctttatcac
      301 ttttaatttt gatcttatta aaaaactgat cataaccctc aaaaaaacca tctttttgat
      361 tttctaccaa aacttcaagt gaaacttgat tttttttcct aaattcataa ttattttttt
      421 ctactatgga ttttaaagtg tttagccttt ctttagctaa agttccattt atcacatctt
      481 tcatggtagc agaatgcgtg ttgtttctag ggctaaaaat aaaagcatgg atatgagtga
      541 gtggaaattc tttaaaattt cttaaagctt cttgccatag ctcttcactc tcgcctggat
      601 gagctactat aaaatccgtc cctaaagcat atcctttgct tgctatagta ttaaaaagct
      661 ttaaatcatt atccgtatgt gatcttcttc tcattatacg aagcattttt tcacttgtat
      721 gttgcaatgc aatatgtaaa tgcctttcaa gccaagcttc atctaaaatt tctaaaaaac
      781 tttcatcaag ctgtgcaggt tctaaactac ctaaccttat gcgttttata cctaaaattt
      841 gtcccatttt ttgcaaaagc ttgcctaggg ttgtgccatt tttaagccca tatgaaccta
      901 tattagtccc tgttaaaaca atttcactat aaccattagc tcccaaaatt tcaacctgtt
      961 ttaaaagagc tttttcatcc acgcttcttg attttcccct cacgctagga ataatacaat
     1021 aagaacaagc aaaatcacaa ccttcttgaa ttttcacaaa agctttggta tgattttcat
     1081 actcacaaac tatatcttta tcaataaaat ttaaatttcc aagttcataa aaacttgtct
     1141 ttgctcctaa aaattcattg attttatctt tatttgacgc tccaagcact ccaaaaactt
     1201 gctttttatc taaaagctcc ttacctttgc ttacagcacc acaacctgta agtataactt
     1261 taataccttt tttttgcatg gtatttacat aagactttat tccgctatca gctccatttg
     1321 taaccgtgca agaatttaca acgataattt gtgctttatt ctcatcattt ataatctcat
     1381 aatcttttac ataacttttt aaaagctctg tatcataaat atttgtgcga catccaaagg
     1441 ttttaaaaaa aactttttct ttcaatcctt attccttgca tgaaaataca tattttcatg
     1501 atgttgttca aaatgatttt gatttaaatt tcctaaatat aaattttgcg atggataagc
     1561 aatttttata tctttatgct tattaaattc ttttataatc tctttgctaa tcgtacttct
     1621 taataccaaa gccgcataag cattagtcat ataccatgca gaaattcgca ttccccaatg
     1681 ttcaaaaaac ataaaaaacc ttggctccac tttaggattt ttaatactat attcatgttg
     1741 taaacgagct atattttttc tagcaagctc agtataacct ttggcatggc gtgtaacaat
     1801 attttccaca atttcttgag ctttgtcaag attgctatca aaagtaacac ttatatcaat
     1861 gccatcaagc acggttttca taccatgatg agtataatta gcaagcaaat ttgtaaaaac
     1921 atagttatta ggaataaata taatacgtcc actacgacga tttttactat aagtttcaag
     1981 cgtaagttct tcataaagag taatgcgtaa aaaagaaata tctataatat ctcctatata
     2041 ggtagtatca ttttgaaaaa cttttacacg atcccctact ctaaaacttc cgccaaaaat
     2101 aatcacacac catccaagca tagacataaa catatctttc atagcaatag ctaagcctgc
     2161 agaagcaaaa ccaagtatag ttacaagata agtaatattt tctatataag caaagagcaa
     2221 aataagaaaa ataatattta tattaataaa attaataatc ttcgtagcag tataatatct
     2281 ttcactatct ttaatgtatt ttttagcaat aaatttcaac ataaaagcta tagctataac
     2341 aataacaata gcaacaagta tatttacagc ccttaagctt tgaactttaa tctcagcact
     2401 tactcgagaa agctcttcat caattttttt ctcataaaca gaataagaaa cactagcaaa
     2461 atttaaagct tgctcaaatt cttccaactt tttatccgaa gcttttaaag cttctatatt
     2521 ctcaatactt ggtttaagct caactaattc cttaagttct gagttttttt ccctgatttt
     2581 atctactaaa tttttaaaat cattaaattt aaatatatac tcttcctttt ctcctcttaa
     2641 tttcttaata tgagaaaaag ctcctataat agccaaagga ttagtaagct tagataaagt
     2701 ttctatatta tcaggggcgc taagactttg tgcaaaattt aaatctttgt attctttaag
     2761 caagctcaat tgctcttcta aatttgctat cttgcgttta agttcttctt gttggtgaat
     2821 atcggaagtc ttttttaaat taagatttaa aatgattaat tcatcattta tatcttgata
     2881 ttttataaaa ttttcataac gtatattcca aatactagca ctgattacag tatttaaagt
     2941 attaattttc tcatttatat tattaataat agtccgattt acatcaccaa aagcaaaaac
     3001 aacaaaaaag gttaaaataa taattttttt cattggaatt ctcttaaagt tgcaattata
     3061 tcttctttag aaatatcacc ttttatcaaa cccttgccca aaggactagc aagaacaaaa
     3121 ttgatttttt tattagagct ttttttatcc atgaaaaaag cttcataaaa ttcatctaca
     3181 ttgttgattt tatatgatat tggcaaaccg aatttaagta aaatatcttt tattttttga
     3241 ctttgcattt tatccaaaag ccctaaattt aaagccaatt gatttgccat aaccatacct
     3301 atagccaccg cttctccgtg taaataaagc ttataatctg taaaattttc tataacatga
     3361 gcaaaagtat gaccataatt taaaagcatt ctaagccctg attctttttc atcttgttca
     3421 acaacccttg atttaagttc tatgcttctt gctataattt gagtaaaaat ttcattctca
     3481 caagtagcat ttaagaaact tttttcatca attttttcta taaaatcaag tatactataa
     3541 tcaaacattg ctgccatttt aataaattca gccatgcctg cagcaagttc tctagagctc
     3601 aaagtcttta aaaaaaaact ctcacaatat acagctttag gttgataaaa agtgccaata
     3661 agatttttac caaaattatt attaacacct gtttttccac ctactgctgc atcaacacaa
     3721 gctaaaagtg tagtaggaat atttataaaa tcaatacctc tttgataaat actagcagca
     3781 aatccgccca tatcactaat cacgccacca ccaaaactta taagtacgct ttttctatcc
     3841 aatttagaat taaacatttg gtttaaaatt tcttccatgg tgcttaaatt tttatattct
     3901 tcaccatctt ttacagtggc aataaaaatt tcttttgcct taattttaga aagtaatgtt
     3961 ttcaaatgaa gacctgaaat cttaggattt gaaagtataa aaaccttact atcaaattct
     4021 aattcttcaa gttcatcaat ataaacctta taagcatttt cttttaactt aacttctact
     4081 tgcattgaac tactcttttt gcatttattt tatcacattt aattaattat ttattctact
     4141 ggtatgaaaa gttggtaatt ttgtctcatt ttataataat gcctatttaa atttgtactt
     4201 aaatttctgg caaaatctct atttagtaat tctttttgaa aactcacaaa ttgtaacaaa
     4261 tcttcgcgat attgcaaatt taaaagaggg ttttcatcat ttttattaat aatttgtata
     4321 tttttatcat aaagcttaga taaacttcta aaatactcct ccatatctgt agtattttga
     4381 gaatttggat tataataata taaaataact ccaaaatcaa gctgtttact taaatcagta
     4441 atgacatttg cattgttttc aagttcactc tcatcagcac ttaaaataat cgcttcttta
     4501 agctcatcaa aagaagcttc acccaccttc ataataggaa tttttaaatc aaaaaaagct
     4561 tgtttttctt tctcaaaatt ttttatatca gttacaacta atcctatatc attattttgc
     4621 aaccacatgg aaatttgttt aaaatccgtg ttgaaataat caaaaaacac accttcttta
     4681 tcctcagaaa gtttttttaa tttttcatac attaccccta atttaggatt gataacatgt
     4741 ataaaaaatc tttttgcatt gcttttttga gttaatttta aagtagtatc aagcactctt
     4801 tcttgcatat tttgattcat atttttcata tcaattaaag caaaaacatt acttccaaaa
     4861 ggcataggaa attgccctgc tttgcctctt atattatgaa aaatactttg taaaacaaca
     4921 ggatctccaa cgatcaaaat gctatcattt ggctctaaaa caaaagatgg ttttacaaaa
     4981 taaatcttag aatttctata aataaggact atgcgccacc ttttttgttg tattgaactt
     5041 atgtgcctat aagcaaaaat agaccctgct ggaattttta cttccataat ctctccaacc
     5101 ccaagtccta tatactgagc tgttaaagca atatctggta aaaaatccat aaatctacgg
     5161 cttaaagtca ttctagcatc agctaaattt gcatgagtat cattaacact taacccccaa
     5221 aaatccatta tttctatttc taaatttgga tttaaagaac gcaaagcctc ataacttttt
     5281 ttagtttcaa attcatcttg catataaata aaagcctgtt taaaatcttt acttataata
     5341 ttttcaagac gcgctgtgct tgtaggatca aaataatgca agtcaatata ctcactagaa
     5401 atatttaagt tatttttttc actattttga cacactactg taaaaaagta acctaagcct
     5461 ttttcaaaac aaagcctttc taagaaatgc tttgctaaaa taccatctat tataattaaa
     5521 atattattca ttttaaactc caaaaaggaa attataacaa atggaatttg aattaaagca
     5581 taaagatgga atggcaaggg tttgtgaaat cactaccgca cacagcactt ttttaacccc
     5641 tgtttttatg cctgttggca cagtaggagc ggttaaaagt cttgatgcta atgatatgaa
     5701 aaatgagctt gatgcaaaaa ttattttagc aaatacctat cacatgtact tgcgtccaac
     5761 ttccaaagta gtaaaagatt ttggaggttt acatggattt acgaaatttg atagaagttt
     5821 tttaaccgat agtggtggtt ttcaagcttt ttctttaagt aaaaattcca aacattttaa
     5881 tgaaggcata gaatttaaaa gtcacattga tggaagtcgt catcttttta ctccaaaaag
     5941 tgttttagat actcaatatg attttaattc tgatattatg atgattttag atgatttagt
     6001 agccctaccc gcaaccaaag aaagggttaa aatttctgtt gatcgcacta tactttgggc
     6061 aaaagaggct attacttatc ataaaaatat gcaaaataaa ggtataggta tagggcaaaa
     6121 tatttttggt attatccaag gtggtacaga ttatgaagaa agaaagcgtt gcgctttaag
     6181 tttaaatgaa atgccatttg atggtttagc tataggtggg cttagcgtgg gcgaagaaaa
     6241 cgccttgatg tacgaaacag tccaaaactt aaacccttat ctagatgaaa atcgtccaag
     6301 atatttaatg ggcgtaggaa cgcctgaaga tttagtagaa aatgttgagc gaggagtaga
     6361 tatgtttgac tgtgtgatgc caactagaaa tgcaagaaat ggaacatttt tcacaagttt
     6421 tggaaaattt aatatcaaaa aagcagaatt tatcaacgat catgaagtta tagatcctac
     6481 ttgctcatgt tatacttgtc gtaatttttc aaggggttat ttaaaccatc tttttaaagc
     6541 taaagaactt actttttttc gtttggcaag tctgcacaat ctacattatt atcttgaact
     6601 tgcaagaaag atgcgtgaag caattttgaa caattctttt acgcaattta aaagaaattt
     6661 ttatcactta agaggcaaat aaaatgctag aactacacga aaatctaaaa aaaatcctac
     6721 aagcaaagaa tttagaaact ttttatagtg aaatttatgg acaaaaaatt tttgtttatg
     6781 tgggattaaa tttggaaact tggcttttta acgatgaaaa aatttataaa cttcaagatg
     6841 gagaatttaa gctttctagc atagaagaat tttcaaattt tattaaatcc attttagaag
     6901 attttaaagt acaaaatact cattttcaaa accttttaga acacaaagaa ggtattatct
     6961 taaaaggtgg ttttgttaaa aatttttaca aaaaatcctt tgtgttaaga caaaaaatca
     7021 acaaaaatct aaagcaaatt aatcttctaa gcgaagcttt caatcttttg cttagtgaac
     7081 aagcacaata taaaaaacat ttaaaaattt taaatttatc catcagcatc ttaagtaaaa
     7141 acaccaaaga acatctagca agaattgaca ctctttatac attaacaaat gcaattaaaa
     7201 atgaaaaaat gaataaaagt atttatcttt taagtatact ttcttctatt ttcttgcctt
     7261 taaatttgat cgtaggattt tttggaatga atactaataa tctttttttc aaagatagcc
     7321 cttatggtac actttatatt ttttctttga tt
//
LOCUS       DARGED010000081         7287 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.081, whole genome shotgun sequence.
ACCESSION   DARGED010000081 DARGED010000000
VERSION     DARGED010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.081"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..795
                     /locus_tag="SFZ84_001279"
                     /pseudo
     CDS             1..795
                     /locus_tag="SFZ84_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
     gene            805..2850
                     /gene="kdpB"
                     /locus_tag="SFZ84_001280"
     CDS             805..2850
                     /gene="kdpB"
                     /locus_tag="SFZ84_001280"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEG8203394.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGSI
                     LTLILSIFPTLFNGNSDERIYNILITFILFIILFFANFAESIAEGRGKAQAATLRQSK
                     KDSKARHIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGTASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLMVVVSLYPFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIKAIKKEQAQGKI
                     VAMTGDGTNDAPVLTQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMTNDIAKYFAILPAMFSVVLPQMQILNIMHLATPKSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            2886..3375
                     /locus_tag="SFZ84_001281"
                     /pseudo
     CDS             2886..3375
                     /locus_tag="SFZ84_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246928.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
     gene            3452..5272
                     /locus_tag="SFZ84_001282"
     CDS             3452..5272
                     /locus_tag="SFZ84_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HEG8203395.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLVKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALAQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEAKALEENIELAKSFDAKIISVYDDIARQIAEYSSLSNVSKI
                     VLGKNKDKKSLKKRFLKLSLKKHPILIYILSMKIKFLLLKYEVKKSFDFLGFLKITGV
                     LLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFAFYSSLVSVLIYNFFFL
                     EPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSENL
                     ARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSADE
                     IAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGKKLKGL"
     gene            complement(5374..>7287)
                     /gene="uvrB"
                     /locus_tag="SFZ84_001283"
     CDS             complement(5374..>7287)
                     /gene="uvrB"
                     /locus_tag="SFZ84_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG8203396.1"
                     /translation="IVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNK
                     SLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS
                     ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKR
                     NDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRF
                     ILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTS
                     TGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGD
                     RSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQI
                     MRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELG
                     IKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGF
                     LRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKHNITP
                     TSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKA
                     AAIRDEINKLRDL"
BASE COUNT         2416 a         1037 c         1298 g         2536 t
ORIGIN      
        1 tttgctttta atttatttta gcgaaaaaat gtcaaatcca aatttggatt ctttgggttt
       61 aaatgcaaat ttgggaaatt tggaaggtaa agaaataaga tttggcacag atggttcgag
      121 tttatttagt gctgtaacta ctgcttttac tacaggaagc gtcaataata tgcacgatag
      181 tttaaatcct ttaagcatca gtgctacttt gctaaatatg atgctaaatg tagctttcgg
      241 tggcgaagga gtagggctta tgaatatgat tatttatgtg ctcttaaccg tgtttatttg
      301 tgcattaatg ataggtagaa ctccagaatt cttgggtaaa aaaatagaaa gcgcacaaat
      361 gaagcttata gctttggtaa ttcttatcca tcctttatta atccttgttt taagtgcatt
      421 agctgttgtt tttgcaaaag atagtataag caatcctagc tttcatggct tggctcaaat
      481 tttgtatgaa tttagttctt cggcagcaaa taatggttca ggacttgaag gtttaaaaga
      541 tgataattta ttttggaatt taagcacagc ttttgctatg ttttgtgggc gttatttggt
      601 tttaatagct cagcttgcta tagctggatc gcttttggct aaaaatacac aagaaaatac
      661 tgcaaattct ttaaaaacgg ataatttaac ttttatgttt gtgcttgttt gtattatata
      721 tatttttgct gcacttactt ttttccagtg cttactttat caagcgttgc agaatattta
      781 tctttatggc attaaggaga gtcaatgtct aaaaaacaaa ataaactcat tacaaaagaa
      841 attttaaata atgccataaa aggagcattt ttaaaatttg atccacgctt tatggtaaaa
      901 aatcctgtta tgtttatggt ggaagttgga tcgattctta ctttgatttt aagtattttt
      961 cctactttgt ttaatggaaa ttctgatgaa agaatttata acatcttaat cacttttatt
     1021 ttatttataa tcttgttttt tgcaaatttt gcagaaagta ttgcagaagg aaggggtaaa
     1081 gcccaagcag ctaccttaag acaaagcaaa aaggattcta aagctagaca cataaaaagt
     1141 gatggcagtg aagaaatgct taattctagc gagttaaaaa taggtgatat agttttagtt
     1201 aaagcaggtg aacttatacc taatgatgga gaaattatag aaggtactgc aagtgttgat
     1261 gaatcagcta ttacaggtga aagtgcacct gttatgcgtg aagcgggcgg tgatttttct
     1321 tctgttacag gtgggactac ggttttaact gattttttaa agattaaaat tttagttgga
     1381 gctggggaaa gttttttaga taaaatgatc aatcttgtag aaggtgctgc gcgtcaaaaa
     1441 actccaaatg aaattgctct taatactctt ttaattgtac ttagtttgag ttttttgatg
     1501 gtggttgtaa gtttatatcc ttttatgcaa tttttaggcg tgagtttgcc tatttcatgg
     1561 ttagtagcat tgcttgtatg tcttattcct acaactatag ggggactttt atcagctata
     1621 ggaatagcag gtatggatag ggtaacgcgt tttaatgtga tcgcactttc aggcaaggct
     1681 gttgaaagtt gtggtgatgt tgatactatg attttggata aaacaggaac gattactttt
     1741 ggaaaccgtt tggcaaatga attttatgaa gtccaaggta taagtaaaga agaaatgatt
     1801 aaagcttgtg ttttatcctc tttaaaagat gaaactccag aaggtaaaag catagttgca
     1861 ttggctcaaa aaatgggtta tgaattagaa ggtaatgata ttaaagaatt tatcgaattt
     1921 agcgctcaaa atagaatgag tggtgtggat ttgcaagata atacaaaaat tcgcaaaggt
     1981 gcttttgatg ctataagagc ttatataagc gaaatgaatg gaaaaattcc tagcgattta
     2041 gaaactaagg taatggaaat ttcaaatctt ggcggcactc ctttggtagt gtgtaaaaat
     2101 gaaaaaattt taggagtgat ttatctaaag gatacagtaa aaccaggact taaagagcgc
     2161 tttgatgagc ttagaaaaat gggcataaaa actttaatgt gtaccggaga taatccttta
     2221 acagcagcta ctatagctaa agaagcaggg cttgatggat ttatagcaga atgcaagcct
     2281 gaagataaaa taaaagccat taaaaaagaa caagcccaag gtaagatagt agccatgaca
     2341 ggagatggaa ccaatgatgc tccagttctt acacaagctg atgtaggtat agctatgaac
     2401 tcaggaactc aagcagccaa agaagcagcc aatatgatag atcttgattc taatcctact
     2461 aaaattttag aagtagttga aataggaaaa ggtttgctta ttactagagg tagtcttaca
     2521 acttttagta tgacaaatga tattgctaag tattttgcta ttttacctgc tatgtttagt
     2581 gtggttttac ctcaaatgca aattttaaat attatgcatt tggctacccc gaaaagcgct
     2641 attttatcag cacttatttt taatgctatt attatacctt tgctcatacc tattgctatg
     2701 cgtggagtta aatttaagcc tatgaaaagc gagcatttgc ttttaagaaa tttgagtatt
     2761 tatggtttag gtggtatgat agcacctttt atagggataa aaataattga tattcctaca
     2821 gcttggatac ttagaatttt aggagtgtga tatgcttaga aactttgctt agtttttttg
     2881 tggtaatgct aatattgtgt actcttgttt atccttttgc tttaaataca gttgcaaaat
     2941 ttatttttcc ttatcaatca agtggaagtt tagtagataa agaaggtcgt ccgactttgg
     3001 atgtaagcaa agcggtaggt tcaaagcttt tgggtcaaga ttttaataaa ccttattttc
     3061 tacattcaag aacatctgtg tcaaattaca atacaagcga tacaaatgaa agcagtgtaa
     3121 gttcaggtgg atttaattat gctatgtcaa atcctgcttt aaaagagcgt gtgcaaaaat
     3181 atttgcaaaa atttttagat gaaaatccgc aaattacaaa agaacaaatt cctttggatt
     3241 tcaggatcag gtcttgatcc tcatatcagt cttcaagcag ccctagtgca aattcctagg
     3301 ataagtcaat cttcaaaaat caccaaagaa gaactagaaa aaatcattca agaaaatact
     3361 gagtctaaat tttagggatt tttggggaag aaaaggttaa tgttttagct gttaatatag
     3421 ctattgctaa agccatgaaa aaagaataaa catgcaaaga caaagtcctg aacaaattct
     3481 taaaaaactt gaggttaaag ctaaggaaga agaaaaaaac aaacttgtaa aattaaaaat
     3541 tttcttaggt tatgctgcag gttctggaaa aacttatgct atgttaagtg aagccagaac
     3601 tttaagggat aatggagttg atgttgtttt aggctatata gagcctcacg atagacctga
     3661 aacaatggct ttagcacaag gttttgaaag tatagctaat cttgaaattc cttataaaaa
     3721 tatagtatta aaagaatttg atttagacgc tacccttaag agaaagcctg ctttggtttt
     3781 agtagatgag cttgcacaca ctaatgctaa aggcttgcgt aatgaaaagc gttttcaaga
     3841 tatagaagaa cttctaaaag cagggattga tgtttatact actttaaata tacaacattt
     3901 agaaagctta aatgatttag tcgctaatat cagtaagata gaagttaaag agcgtattcc
     3961 tgatcgtatt tttgatgagg ctgatcaggt tgaacttgtt gatattgaac ctaataagct
     4021 tttaaaaaga atgcaagatg gtaaaattta taaggaaaaa caagctaaac tagcacttga
     4081 aaatttcttt cgccaagaaa gacttatagc tttgcgtgag attgccttaa gaagacttgc
     4141 ttcaagagtg aatttaagag caagtgaaca aaggcttatt aatgatgatt tagcttatca
     4201 tactggagag catattttag tttgtattaa tgcttcaaat gcaaaggtta ttcgtgcagc
     4261 tgcaagactt gctttagctt ttcatgctaa attgagtgcg ctttatataa aaaatcccaa
     4321 tattaaagaa gcaaaagcct tagaagaaaa tatagaacta gctaaaagtt ttgatgctaa
     4381 aatcattagc gtatatgatg atatagcaag acaaattgca gagtattcaa gccttagcaa
     4441 tgtctctaaa attgttttag gcaaaaataa agataaaaaa agtttaaaga agagattttt
     4501 gaagctgtcg ctaaaaaagc acccgatatt gatttatatc ttgtcaatga aaatcaaatt
     4561 tctactccta aaatacgaag taaaaaaaag ttttgatttt ttaggttttt taaaaatcac
     4621 aggagttttg cttttagcaa cttttatagc ttttgtattt cataaattta atactcagcc
     4681 aagtaatata gttatgattt ttattttagc agtttttgct tcttctttta tttctgataa
     4741 taaaattttc gccttttatt cttctttggt aagtgttttg atttataatt ttttcttttt
     4801 agaacctatt tttagtctta aagttcatga tagtggaaat attattactt ttacaactat
     4861 gtttatagtt ggatttttaa cagctgtttt tactagaaga ttaaaattgc aatctaaaga
     4921 actcactaaa agggcttata gaacagctat tttacttgaa aatagtgaaa atttagcaag
     4981 agtgaaaagc aaacaagagc tttgggaaca acttggaaat caagctttaa aattattaaa
     5041 tttacctatt attatttatc ctataaataa aaacaatatt ttatcgaaac ctttgttgtt
     5101 ttttaacgat gataagcaaa tgttaaaaaa ttgttttagt gctgatgaga ttgctattgc
     5161 tcaatgggtt gcaacaaata aagaaagagc aggtgtttgt acaaataccc tacctaatgc
     5221 taatgctatg tatttaccta tagaagatgg gaaaaaacta aaggggttat aggtatagtt
     5281 ttaaaagaaa aacgtccctt gcaagacttt cagtatgaaa ttttaagtgc tttacttaat
     5341 gaggcaggag ttagaacaag ggatatattt ttattataaa tcccttaatt tattaatctc
     5401 atctctaata gcagcagctt tttcaaactc aagtgcttta gctgcttcaa gcatttgttt
     5461 tcttaattct ttgacaagtt ttgctctttc gctagcaggc attttttcta gttttttacc
     5521 tttgcgataa atttcgccta aatcctcttc atttttcaaa ctttcttcaa tatggcgttt
     5581 gactgaagtt ggcgtgatat tgtgtttttt attataagcc atttgaagtt tgcggcgttc
     5641 attggtggta tccatagctt cttgcatgga ttttgtgatt tttttgcaaa aaagcaaaac
     5701 cttaccattg acatttctag ctgctcttcc catggtttgg attaaacttg tagtgcttct
     5761 taaaaatcct tccttatctg catccataat ggcaatgagt gaaacttcag gtagatctag
     5821 tccttctcta agtaagttaa tgccaattag catatcaaaa gcaccgcttc ttaaacctct
     5881 tatgatttca ttgcgttcta tagcatcgat gtctgagtgc atgtatttga cttttatacc
     5941 aagctctaaa taataccttg taagttcttc agcgagtttt ttagttagca cagtcactaa
     6001 aacacgttca ttcctttgta tgactttttt agcctcatca aataaaattt caacctgatt
     6061 atcactatct tttaactcta ttaaaggatc aagcagtccc gtaggacgca tgatttgatg
     6121 aaagatgttt tctttgctaa gttcaagttc taaaggtgca ggtgtggctg aaacaaaaag
     6181 aaattgacaa tttttatgga taaattcatc aaacattaaa ggacgattat ccaaggctga
     6241 aggcaaacga aaaccataat ctaccaaggt ttgttttctg ctcctatctc ctgcaaacat
     6301 acctctaaat tgtggtaaag atacatggct ttcatcgact ataacaagaa atttcctatt
     6361 tttaatcgca aaataatcaa aaagcgtata aggagtatca ccttctttaa gccctgttaa
     6421 atgccttgca tagttttcaa ctcctttaca cattcctgtg cttgtaagca tttcaagatc
     6481 aaattcaacc ctttgtttaa ggcgttgata ttctacgagt ttattttcat gttcaaaata
     6541 agcaaggcgt tcgttaagtt ctgcttttat gtcttttatc gcttgtttta atcttgtttc
     6601 gcccacgcta aactggcttg taggatagag tatgaagcgt tttaaatctt tacctttttt
     6661 attttctaaa acattgtaat gatacatagc atcaagctca tcgccaaaaa attcaagtct
     6721 tactacttca tcttcataat aagctggata aatatctata atatctcctt gaactctaaa
     6781 atctgcacga tcaaaaaaat tatcatttct tttataaccc atatctacaa gtttttttaa
     6841 aagttctttt tgtgaaattt gcatacctag ttcaaagatt aaaaccatgc ctatgtattc
     6901 atttggatta ccaagtccat aatttgccga aacgctagct atgcaaacta catcttcata
     6961 acttaaaaga gaagcagtag cgctcagtct taaacgctct aagtcttcat tagtggagct
     7021 gtctttttct atgaaaacat cagtgcgtgg gatataggct tcaggttgat aataatcata
     7081 ataagatata aaatattcca catgattttt agaaaaaaag cctttaaatt cgctataaag
     7141 ttgtgcacaa aggcttttgt tgtgactcat gataagagta ggcatattaa gttctttaat
     7201 gacatttgcc atggtaaagg tttttccact tcctgtaacg cctagtaagg tttgatattt
     7261 gttgcctttt tttatacttt ttactat
//
LOCUS       DARGED010000082         7237 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.082, whole genome shotgun sequence.
ACCESSION   DARGED010000082 DARGED010000000
VERSION     DARGED010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7237
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.082"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..627
                     /locus_tag="SFZ84_001284"
     CDS             <1..627
                     /locus_tag="SFZ84_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein CapA"
                     /protein_id="HEG8203397.1"
                     /translation="KEADDRLEQVICKNKKKFFDLLLGYGQNPTFPYDIYMNYYFKDF
                     DQYSNIFYVACRIFSEFNIPESRVNTYYPNFHPIIFDQFKMFIFKDLPKNDQEIGAVK
                     KIRNHLAYKLGVAAIKNSKSLWGYIRMPYVLSYIRDMHKESQNKMDKKSISLEYYSDY
                     ESALKEKEGFVYKLGQIIIKAHKNWHKGGYIMLWFEVKKLKKEFKKGK"
     gene            627..1172
                     /locus_tag="SFZ84_001285"
     CDS             627..1172
                     /locus_tag="SFZ84_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG8203398.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLV
                     PDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKWEK
                     FIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGI
                     DWPTNTPILSDRDILATKNKG"
     gene            1176..2102
                     /locus_tag="SFZ84_001286"
     CDS             1176..2102
                     /locus_tag="SFZ84_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203399.1"
                     /translation="MEKLLKELNNNIKLSNQLSYQILMSNIISNLDIDKKDKEILLLL
                     LQARDRNYIRINNNEQCYQNIINYLNLIRPLELPLCDLLRIGGNGDGGYVMYNGGGDM
                     SDINAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYDHENIVFHKKFIGNVNN
                     ENTITLVQALKDNNLDESKPNILQCDIENCEWDMLENIDISILNKYFSQVIFEFHGCN
                     PEEQDGVEKRISLLKKLNEYFVPMHTHFHNHGKIFYSQGLFFSTTLEVSYLRKNLINL
                     DIMKYRDVAGGFKNLDFPWISNPEIPIRFRGY"
     gene            2102..3142
                     /locus_tag="SFZ84_001287"
     CDS             2102..3142
                     /locus_tag="SFZ84_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEG8203400.1"
                     /translation="MQTNSKIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVN
                     QQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMIQNNVIHNSFLNNVKKL
                     VFFGSGYMYPENAKNPLKEEYLFQGDLEYGAYSFGAAKIAGAIMCESYNIQYGTNFIT
                     LVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNNFEEAKEYL
                     HNFGISKKSVEIWGTGKVRREFIHSDDLADVAIYTMQNIDFKDLIKDRKSKNTHINIG
                     TGIDYSIKEVALMVKNIVGFSGELVFNTSRPDSTMDRLMDCSKIHSLGWRHKIELKDG
                     IKMMYEWYKTQN"
     gene            3166..4107
                     /locus_tag="SFZ84_001288"
     CDS             3166..4107
                     /locus_tag="SFZ84_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase"
                     /protein_id="HEG8203401.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYRDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSANIGEDPDKRDYLVSN
                     TKLEATGWKPDNTLEDGIKELLRAFKMMKVNRFANFN"
     gene            4126..4978
                     /locus_tag="SFZ84_001289"
                     /pseudo
     CDS             4126..4978
                     /locus_tag="SFZ84_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344809.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
     gene            4998..6017
                     /gene="hddA"
                     /locus_tag="SFZ84_001290"
     CDS             4998..6017
                     /gene="hddA"
                     /locus_tag="SFZ84_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG8203402.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFRADFGTLAQILGKSWRSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALRKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            6005..6610
                     /gene="gmhA2"
                     /locus_tag="SFZ84_001291"
     CDS             6005..6610
                     /gene="gmhA2"
                     /locus_tag="SFZ84_001291"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8203403.1"
                     /translation="MENLNSYIKGHFADSILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALEFCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            6598..>7237
                     /gene="hddC"
                     /locus_tag="SFZ84_001292"
     CDS             6598..>7237
                     /gene="hddC"
                     /locus_tag="SFZ84_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 1-phosphate
                     guanosyltransferase"
                     /protein_id="HEG8203404.1"
                     /translation="MQAIILCGGLGTRLKSIIKDIPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKETLKFVKNEAYVL
                     NGDTFFDIDLSKLKLNESKICLALKQMNDFDRYGTVNVDEQDLVISFEEKVFKKQGLI
                     NGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPED"
BASE COUNT         2695 a          788 c         1362 g         2392 t
ORIGIN      
        1 aaagaagcag atgataggtt ggagcaagta atttgtaaaa ataaaaaaaa gtttttcgac
       61 ttattgctag gatatggcca aaatccaact tttccttacg atatttatat gaattattat
      121 tttaaagatt ttgatcagta tagtaatatt ttctatgttg catgtaggat tttttctgaa
      181 tttaatattc cagaatctag ggtcaatact tattatccta attttcatcc tataatattt
      241 gatcaattta aaatgtttat ttttaaagat cttcctaaaa acgatcaaga aataggtgct
      301 gtaaaaaaga ttcgtaatca tttagcttat aaacttggcg ttgctgctat taaaaattct
      361 aaatctttat ggggatatat aaggatgcca tatgttttgt cttacataag agatatgcat
      421 aaagaaagcc aaaataaaat ggataaaaaa tctattagtt tagaatatta ttctgattat
      481 gagtcggctt taaaagaaaa agagggtttt gtttataaat taggacagat tataatcaaa
      541 gctcataaaa attggcataa aggaggatat attatgttgt ggtttgaggt taaaaaatta
      601 aaaaaagaat ttaaaaaagg aaaataatgg caatagaatt tgatatacaa gaatcaaaaa
      661 ttttaaaagg agtgtatatc ataactccta ataaatttag agatttaaga ggtgaaattt
      721 ggacagcttt tacagatgaa tatttaagca agttggttcc agatggaatt aaatttaagc
      781 atgacaaatt tataaattcc cattttaatg ttttacgtgg aatacacgga gatgtgaaaa
      841 cttacaaact tgtaacttgt gtctatggag aagtgcatca agttgtggtt gattgcagaa
      901 aagattcccc aacttattta aaatgggaga aatttattat aagttataaa aatcagcaac
      961 ttattttatt accaccaaat atgggaaatt ctcattatgt gagttcaaag gaagcagtgt
     1021 attattataa acttgcttat gagggggaat atatggatgc acctgatcaa tttacttatg
     1081 catggaatga tgaaagaatt ggtatagatt ggccaacaaa tacgcctatt ctttccgatc
     1141 gcgatattct tgcaactaaa aataaaggat aaattatgga aaaattatta aaagaattaa
     1201 ataataatat taaacttagc aatcaattgt cctatcaaat cttaatgtca aatattattt
     1261 cgaatttaga tattgataaa aaagataaag aaattttact tttattatta caagcaagag
     1321 atagaaatta tattcgtata aataataatg aacaatgtta tcaaaatatc ataaattatt
     1381 taaatctcat tcgacctttg gaattgcctt tgtgtgattt gttaagaata ggtggtaatg
     1441 gagatggtgg ttatgtgatg tataatgggg ggggggatat gagtgatatt aatgcaaaag
     1501 ctctttcttt gggtgtttcg gatagttctc cttgggattt agaaatggct cagaggggat
     1561 ttaaggtgat agaatatgat gctagtatag aaaaatgtcc ttatgaccat gaaaatattg
     1621 tttttcataa aaaatttata ggtaatgtaa ataatgagaa tacaattact ttggtacaag
     1681 ctttaaaaga taataattta gatgagagca agccaaatat tttgcaatgt gatattgaaa
     1741 attgcgaatg ggatatgctt gaaaatattg atataagtat tttaaataaa tatttctcac
     1801 aagttatatt tgaatttcat gggtgcaatc ctgaggagca agatggggtg gaaaaaagaa
     1861 taagtttgct aaaaaaactt aatgaatatt ttgttccaat gcatacgcat tttcacaacc
     1921 atgggaaaat tttttattct caaggattat tttttagtac cactttggag gttagttatt
     1981 taagaaaaaa tttgattaat cttgatatta tgaaatatag agatgtcgca gggggattta
     2041 aaaatttaga ttttccttgg atttcaaatc cagaaattcc aatacgattt agaggttatt
     2101 gatgcaaaca aattcaaaaa tatatatagc ggggcacaaa ggaaccgcag gtacagcatt
     2161 ggtagaaaac ttacaaaaaa gaggatttaa taatcttgtt ttaaaaacaa ggcaagagct
     2221 tgatttggtt aatcagcaag cggttgctaa attttttaaa gaagaaaagc cagaatatgt
     2281 ttttttgact gcagtcttac cttgtggtgc tgcaaatgtc gctcaaaggg ctgattttat
     2341 ttatgaaaat ttgatgattc aaaacaatgt tattcacaat tcatttctta ataatgttaa
     2401 aaaattggta ttttttggtt ctgggtatat gtatcctgag aatgctaaaa acccattgaa
     2461 agaggaatat ttatttcaag gtgatttaga atatggcgct tattcttttg gtgcagccaa
     2521 aatagctgga gctataatgt gtgaaagtta taatattcaa tatggtacta atttcattac
     2581 tcttgtttta aataatcttt acggaactaa agcaaatttt gattttggaa aatcaagagt
     2641 cttacccgca ttgcttagaa aatttcattt agcaaaattg ttaagcgagg gtaatataac
     2701 tcaaatcctt caagatttga aaatgaataa ttttgaagaa gcaaaagaat atttgcataa
     2761 ttttggaatt agtaaaaaaa gtgtagaaat ttggggcact ggaaaagtta ggagagaatt
     2821 tattcatagt gacgatctag ccgatgtagc tatctatacg atgcaaaata ttgattttaa
     2881 agatcttatt aaagatagaa aaagtaaaaa tacccatatt aatataggga caggtattga
     2941 ctattcaatc aaagaagttg ctttgatggt aaaaaatata gttgggttta gcggagaact
     3001 agttttcaat acttctagac cggatagcac aatggataga cttatggatt gctcaaaaat
     3061 tcattcttta ggttggaggc ataaaattga acttaaagat ggtattaaaa tgatgtatga
     3121 atggtataaa acacaaaatt gattttcaaa gacgaaagga aaagtatgtc aaaaaaagtt
     3181 ttaattacag gtggtgcagg ttatataggt tcggttttaa cgccgatttt acttgaaaaa
     3241 ggttatgaag tttgtgtgat tgataatttg atgtttgatc aaatttctct tttatcttgt
     3301 tttcataata aaaattttac ttttataaat ggtgatgcta tggatgaaaa tcttattagg
     3361 caagaggtag caaaagctga tattattatt cctctagctg ctttagttgg agctccactt
     3421 tgtaaaagaa atccaaaatt agctaaaatg atcaattatg aagccgtaaa aatgataagt
     3481 gattttgcaa gtccttctca aatatttatt tatcccaata caaacagcgg ttatggtata
     3541 ggagaaaaag atgcaatgtg tactgaagaa tctcccttgc gtcctatctc agaatatggg
     3601 atcgataaag tgcatgcgga gcaatatttg ctcgataaag gaaattgtgt gacttttcgt
     3661 ttagctactg tttttggaat ttcacctaga atgagacttg atttacttgt taatgatttt
     3721 acttatcgtg catatagaga taaatttata gtgctttttg aagagcattt tagacgcaat
     3781 tatattcatg ttcgcgatgt ggttaaagga tttattcatg gaattgagaa ttatgataag
     3841 atgaagggtc aggcttataa catgggatta agttctgcaa atttgaccaa aagacagctt
     3901 gctgaaacaa ttaaaaagta tattcctgat ttttatatcc attcagccaa cataggtgaa
     3961 gatccagata aaagagatta tttggtttca aatactaaat tagaggctac aggttggaaa
     4021 ccagataata ctttagaaga tggtattaaa gagcttttaa gagcgtttaa aatgatgaaa
     4081 gttaatcgct ttgcaaattt taattaaaat taaaggagat aaataatgaa aaaagaacaa
     4141 ttggaagtat taaaagaggc tctaaatggc ttgatttatc aaattgataa tcatcagcaa
     4201 gctaggaaac caatagctga tgtagaaagg ataatttcag agttgcaagt attaaaccat
     4261 tggaataagc aagaaaatgt ttataatgca ttgcatttaa ttcagggtgc tatagccgat
     4321 ccacaagggc ttggtagatt aaatttgtta ttagataatg ccagaattcc aaaacaatat
     4381 tatgatattt tttacaagat gctttatgtc gataaatatg gggggggggg atggatatcg
     4441 tccagtatgt attgattgtg gtggacatgc aggcttaatt actgatatta ttttacattg
     4501 tggcgggcaa agttatatct ttgagccaaa tatttattta aattattttt taagaaaaaa
     4561 atatgaaaat aatataaatg taaaactttt tcaaaaagca gtatcggaca gaaattatga
     4621 aacagatttt attatgtttg gaaataggat actatctcaa ggcaatcgta tagttgaaag
     4681 tgtacaagac agtcagacgg aaaaaacata taaagttcaa gtaattgatt tatgcgagtt
     4741 tatcgaaaat gaaattttaa cacaacataa aaggatttat tttctaaaac ttgatattga
     4801 aggaatggag tttgagataa tgaaaaaaat tattgaaaaa aaaatatata aaaaaattga
     4861 ttatattgct tgtgaaacac atgaatatat gtttgatgat tcagagaaaa agatagggga
     4921 gttaaagcaa ttgattaata aatgtaatat tcaaaatatt ttacttgatt ggatatgata
     4981 aataaattag gagatttatg aaaaccatac gcacacaaac tcctcttcgt ctcggtctag
     5041 caggtggtgg gactgatata aatttatatt gtgataaata tacaggttat gttttaaatg
     5101 cgactatatc tttatacata cattgtactt tgatcaaaag agaagatgga aaaatcattt
     5161 ttgattctcc tgatacaaat tcttactgtg agtacgaaag taaagaattc ttaggaaatg
     5221 atggaaaatt agatattttt aaaagtattt ataatcgcat tgtaaaagat tttacaaaaa
     5281 aacctttgag tttttctttg catacctatt cggatgtacc aagtggtagt ggcttgggcg
     5341 gaagctcaac tttggttgta ggggttataa aagcctttgc agaatggctt aatctacctt
     5401 taggagaata tgaaatcgct aaacttgctt atgagataga aagagaagat ttaggcatag
     5461 taggtggagc acaagatcaa tacgccgcaa cttttggtgg ttttaatttt atggaatttt
     5521 ataacaataa aagagtcatt gttaatcctt tgcgtattaa aaactggata gctagtgagc
     5581 ttgaagctag aactgtgctt tattttacaa atatcacaag agaagcaaaa gatatagaag
     5641 agcataaaaa aggaaagctt ggagatgaaa aatctttaga agccatgcac gcgataaaac
     5701 aagatgctat aaagatgaaa gaagctttat ttagagccga ttttggtact ttggcgcaaa
     5761 ttttaggaaa atcttggcgg tcaaaaaaaa tcatttcaga aatcgttagt aatgatgagc
     5821 ttgaaagaat ttataaactt gctatagata acggagccta tagtggcaaa accagcggag
     5881 caggagctgg tggatttatg tttttcttcg tagatcctac taaaaaatac aacttaatca
     5941 aagctttaag aaaagagcaa ggttatgtgc aagatttttc atttacaaaa gagggggtta
     6001 aatcatggag aatttaaatt cctatataaa aggacatttt gcagattcta ttttagtaaa
     6061 agaacaaatt ttaaaagatg agaatttgat aactcttatt aaaaatgctt cattagaagt
     6121 cataaaagct tataaaaatg gtaacaaaac tttattagca ggaaatggtg gcagtgctgc
     6181 agatgcacag catattgcag gggaatttgt aagtaggttt tattttgata gacccggtat
     6241 cgcaagtatt gcacttacta cagatactag catattaaca gctattggta atgactatgg
     6301 ttatgaaaat ttgtttgcta gacaagtgca agctcaaggt gttaagggag atgtttttat
     6361 aggcatttca acaagtggaa atagtaaaaa tatcttaaaa gctttagagt tttgcaaaca
     6421 aaaagaaatc ataagtatag gcttaagtgg agctagtggc ggggctatga atgaactttg
     6481 tgattattgt ataaaagtgc cttcaacttg cacgccaaga attcaagaag cgcatatttt
     6541 aataggacat attatttgtg ctattgtcga agaagagctt tttggtaaag gtttttcttg
     6601 caagcaataa tactttgtgg cggcttagga acaagactta aaagtattat aaaagacatt
     6661 ccaaagccta tggcaccgat aaatgataag ccttttttag aatttatttt tgagtatctt
     6721 aaaaagcaag gtataaaaga agtaatttta gcagtatcat acaaatatga agtgataaaa
     6781 gagtatttta aagatgagtt tttaggtata aaaataaaat acagcatcga aaaagagcct
     6841 ctaggaacag gcggagccat aaaagagact ttgaaatttg taaaaaatga agcttatgtt
     6901 ttaaatggtg atactttttt tgacatagat ttaagtaaat taaagctaaa tgaaagtaaa
     6961 atttgtcttg ctttaaaaca aatgaatgat tttgatagat acggcacagt aaatgttgat
     7021 gaacaagatc ttgtaatttc ttttgaggaa aaggtattta aaaagcaagg tttaatcaat
     7081 ggtggaattt atcttttaac taaagatatt tttaatgatt ttgctttgca ggaaaaattt
     7141 tcttttgaag agtttttaca agaaaattat aaaaaactaa aggctagggc ttgtattttt
     7201 gatgattatt ttatagatat tggtgtgcct gaggatt
//
LOCUS       DARGED010000083         7207 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.083, whole genome shotgun sequence.
ACCESSION   DARGED010000083 DARGED010000000
VERSION     DARGED010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7207
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.083"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1203)
                     /locus_tag="SFZ84_001293"
     CDS             complement(<1..1203)
                     /locus_tag="SFZ84_001293"
                     /inference="COORDINATES: protein motif:HMM:NF015210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEG8203405.1"
                     /translation="MIKKVKEVLNNSIFFIPNYQRDYAWEEKNLDDLWEDLLEAEQAV
                     SDQMGHFLGTIVVSKNSKNPEIYDIIDGQQRITTIFMLRYALNFRTQNSQRNIVYFCD
                     DNDNFRLQVQDENKLFFNEVLKQAENNKINIELENKAQTQGQQKLYKVFKAIWSYVAS
                     LESDKALKLFNIIGNMSIMWLEEQDSGKAIRMFQTVNDRGIPLLILDKLKSLLILYSN
                     KYCKGELDEVINERFGKIFKISMNIKKHKTIHSLGDVQFYQELEARIFNYHSLGVKEI
                     AHYRNSANIHYNELKRVLKNKDKTKEEFKKWLDDYSKYLLQFFETFLKILEKTQDNIE
                     MFKIFMILKINPYFYSSLIRLEMNNILDDECLRLFSQAEIIFYSFGQTNDSTAFKLGE
                     VTESKDEFK"
     gene            complement(1223..5710)
                     /gene="gltB"
                     /locus_tag="SFZ84_001294"
     CDS             complement(1223..5710)
                     /gene="gltB"
                     /locus_tag="SFZ84_001294"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG8203406.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIRLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHIAYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     Q"
     gene            complement(5844..7151)
                     /locus_tag="SFZ84_001295"
     CDS             complement(5844..7151)
                     /locus_tag="SFZ84_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG8203407.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         2401 a         1389 c          931 g         2486 t
ORIGIN      
        1 tttaaattca tcttttgatt ctgttacctc gccaagttta aaagcagtag aatcattagt
       61 ttgtccaaag gaataaaata taatttctgc ttgtgaaaaa agtcttaaac attcatcatc
      121 taatatatta ttcatttcca atctaataag agaagaataa aaataaggat taatttttag
      181 tatcataaaa attttaaaca tctcaatatt atcttgtgtc ttttcaagaa tttttaaaaa
      241 agtttcaaaa aattgcaata agtatttgga ataatcgtct aaccattttt taaattcttc
      301 tttagtttta tctttatttt tcaacactct ctttaattca ttataatgta tattggcact
      361 atttctataa tgtgcaattt ctttcactcc taaggaatga taattaaaaa ttcttgcctc
      421 taattcttga taaaattgaa catcacctaa agagtgaata gtcttatgct ttttaatatt
      481 catgctaatc ttaaaaattt ttccaaatct ttcattaata acctcatcta attccccttt
      541 acaatactta tttgaatata aaatcaataa agattttaat ttgtctaaaa ttaaaagtgg
      601 gatacctcta tcattaactg tttgaaacat tctaatagct tttccagagt cttgctcttc
      661 tagccacatt atagacatat ttccaatgat attaaataat tttaaagctt tatcagattc
      721 caaacttgca acataactcc aaattgcttt aaagacttta taaagttttt gctgtccttg
      781 tgtttgtgcc ttattttcta actctatatt aattttatta ttttctgctt gttttagaac
      841 ttcattaaaa aacaatttat tttcatcttg aacttgaagt ctaaaattat cattatcatc
      901 acaaaaatat acaatatttc tttgagaatt ttgcgttcta aaatttaaag cataccgtaa
      961 cataaaaatt gttgtaattc tttgttgccc atctataata tcatagattt ctggattttt
     1021 agaattctta gatacaacta tagttcctaa aaaatgaccc atttgatcac ttactgcttg
     1081 ttcagcctct aataaatctt cccacaaatc atctaaattt ttttcttccc aagcataatc
     1141 tctttgataa tttggtataa aaaaaattga attatttaac acttctttta ctttttttat
     1201 cattatttct ccttttaaaa ttttattgtg tgattttcaa aaatgctgct aaatttggat
     1261 ctttttcatt tttacaaaga tcaagcattt ttaacatctt ttcataatct cttggcatga
     1321 ctttaaaaaa gtctttttta tcgaattttt ctaagatatc tttagccttt ttagaatctg
     1381 tataagcgat atgtttttct atcacagctt ttaattcttt ttcatcctta gcattaagat
     1441 ctttaatatc cacaagctcg gtatttacat gagcttcatt gtgtcttcca aagatataaa
     1501 caacgccacc actcatacca gcagcgaaat tcgcacccac atctccaaga actacaactt
     1561 gcccacctgt catatattca cagccatgca cacctgttcc taaaaccaca gccaaagctc
     1621 ctgaatttct tacacaaaat ctttcccctg ctataccatc taaatacact tcaccttttg
     1681 tagctccgta taaacaagca tttcctgcga ttatattttc ttcaggtgaa aaagtggctt
     1741 catttgaaat ttttgctatg attttgccac cacttaaacc ctttcctaaa taatcattgc
     1801 tatcgcctat aatctcaagt ctaatgccct ttaacaaaaa cgctccaaag ctattgcctg
     1861 cattgcctat agctttgata tggatgctat cttcatctaa agcatctttt ccataagttt
     1921 ttaaaatttc acttgaaagc atagttgcaa aagtacgact ttgatttcct acttctaaag
     1981 aaagtttgat aggctctttt ttctccacag catttttaca aagtggtagt aaaattctat
     2041 aatcaatcgt tttttcaagt ttattgtctt tataatcttt aaaatgcaca gcggttctat
     2101 tataagtagg caaggatttt aaaattttat ctaaatttag ctttcctgct ttaccttgca
     2161 cacttttttg gcggagttta tccacgcgac ctatcatatc atctaggcgt tcaaaaccaa
     2221 gccttgccat gtattctcta agctcctcag ctataaaata catgaaatta atcacatcat
     2281 ctactttgcc tttgaaacga tctctaagtt ctgtatcttg agtggctata ccaaaaggac
     2341 aggtatttag atgacaaact ctcatcattg tacaacctaa aacaatcaaa ggcgcggttg
     2401 caaaaccaaa ttcttcagct cctaaaagtg ctgctatggc taaatcacgc ccgttcataa
     2461 gctttccatc agtttctaat cttaccctat ctctaagctt atttaagatc aaagtttgat
     2521 gcgtttcagc taagcctaac tcccaaggaa ttccagcatg cggtatagaa gttctaggac
     2581 ttgcacccgt acctccatca taacctgaaa caaggattaa attcgcgcct gccttagcca
     2641 cacctgcagc aaccgttcct atgccatttt cgcttacaag ttttactgaa attttagcgt
     2701 ctttgttcgc atgttttaaa tcataaatga gttgagccaa atcctcaata gaataaatat
     2761 catgatgagg aggtggggaa ataagcgtca cacctgcagt agaatgtcta gccttagcta
     2821 tccaaggata gactttaaag cccattaatt gtccgccctc acctggtttt gcaccttgag
     2881 cgactttgat ttgaatttct tttgcatgac ttaagtagtt taaatccacg ccaaaacgcc
     2941 cacttgctac ttgcttaatg gctgagtttt tatccacacc ctctttgatt tcatagcgtt
     3001 cttcatcctc gccaccttca cctgaatttg atttagcacc tattttattc atagcctgtg
     3061 ctaaacactc gtgtgcttct ttagaaatag aaccataact catcgctcct gttctaaagc
     3121 gtttaactat actttctaca ctttcaacct tatctatact gatagcttca ctaaaatcaa
     3181 attccatcaa agaacgcaaa ttaacttgtt tttcatctac taaagccgag tattttttaa
     3241 agcttttata gtctttgttg cgacaggctt gctgaagatt aaaaatcaca agtggatcga
     3301 ttaaatgttc ttctttagca cttctaaaac catgaattcc tttagaatct aaagccttat
     3361 gcgtatcgtt aaaagcatgt ttatgtaaag caatgagctc tttttcaaaa tcttctaaat
     3421 ccataccttc aatgcgtgaa gttgtagaag tgaagtattt atcaatcact ttagagctta
     3481 agcccagaca ttcaaaaagt gcagagccat tataactttg caaggtagaa actcccattt
     3541 tagaagcaat tttgactatg ccacttgaac ttgccttgat gaaattttct accgcctttt
     3601 cataacttaa atttaaatct ttattggcaa tgagtttttg tatgctctca taaaccaaat
     3661 aaggattaat aacagtcgca ccataaccta aaagacatgc aaaatgatga atttctctag
     3721 gttcaccact ttcgataata agacttgtgt gtgttcttaa attttttctt actagatgat
     3781 tatgcactcc agaaacagca agcaaagcgg ggatataagc gtttttttca tccactcctt
     3841 tatcgcttaa aatgataata gaaacacctt ttttaacctc atcttctatc ttaacgcaaa
     3901 gctcatctaa agccttttct aaagtttttt tagaataatc ataaagtata gaaaattctt
     3961 taacttgaaa tttatttaaa gccttaactt caaaaagttc ttcattgctt atcacaggca
     4021 aggctatttt tacgcgtttt gcattgtttt catcaggttt taataaattg ccttcgcttc
     4081 ctagataaat ccttgtagaa gtaacaatct cttctcttat ggcatcaaga ggaggattag
     4141 ttacttgtgc aaaaagttgt ttaaaataat tatacaaagg ttgataagtt ttagaaagta
     4201 tagccaaagg agtatctaca cccatagctg ctatagcttc tttaccattt tgagccatag
     4261 cagccacact cattttaagc tcatcataac tccaaccaaa agctttttgg agttttaaaa
     4321 cctcatcttc ttttaaaaac tgatgtttat aaactccgct tttttgtttt tcaagttcaa
     4381 ctaaattttt aagccatttt ttataaggct tggcattagc ataatgctct ttgatttcat
     4441 tatcagctat aaccctacct cttgctgtat caacgagtaa aagttttcca ggttctaagc
     4501 gttttttggc tttgatattt ttttcatcaa gttttaaagc ccctgtttca cttgaaagta
     4561 tgagcatatc atcttttgta agataatacc ttgaaggacg aaaaccattt ctatccaaac
     4621 tcgcccccat aatcactcca tcagtaaaaa ctatagcagc aggcccgtcc caaggctcca
     4681 tcaataaaga atgatattca taaaaagcac gctttttgct ttccatattt tcatttttat
     4741 gccaaggttc tggcaccatc atcataaaag cttcttctaa agtacgacca tttagagcta
     4801 aaaattctaa agtattatca aacattgcag aatcactgct aggcttagct atgataggaa
     4861 aaatttcatc taaattttca aaatactcac tttgcatcaa gccttctcta gctcttatgc
     4921 tatcaacatt tccgcgtatg gtattaatct ctccattatg caccatataa cggtttggat
     4981 gggctctttc ccaacttggg aaggtattag tcgaaaagcg agaatgcacc aaagcgatgg
     5041 ctgatttcat attgacatct ttaaaatcaa gataaaaatc gctcaattga gttgaaagaa
     5101 gcattccttt ataaactatg gtgcgtgaag aaaaacttga aaaataaaat tttggcacat
     5161 taatagctct tttttctata aggcgacgcg tactataaag cactctttca aactcaagtc
     5221 ctgcacttat tttacttggt tttttcacaa aggcttgtaa aaaataaggc atagctttta
     5281 aagcacttgc acctatatcg ctaggattaa aaggcacttc tctaaaacct aaaaattcaa
     5341 gttttttatc ctttaaacct tgtaaaaata tttcttttgc ttcttctttt gcatcagtat
     5401 tgggtgataa aaacatctgt gctacggcat aatcaccctt tttaggaagt tcaaaaccca
     5461 attcttgagt tttaaaaaaa tcatgtggaa tttggatcaa aatccccgcc ccatcacctg
     5521 aattttcttc agctcctgca ccacctcggt gctcaagatt catcaaaatt tctaaagcat
     5581 cacaaataac cttataagag gcaataccgc gtatattagc aactgcagcg ataccacagg
     5641 catcgtgttc gttctttggg tgatataaac ctatgctttg attattttct aggatatttt
     5701 ctaaatccat tttgctctcc ttataagact gatttaaatt ttgttagctt tataaggatt
     5761 atagcataca tttttttaaa atcgatataa tttttatctt aaaaataaat aaattaaaaa
     5821 atattttgat agatttgtaa aaattataaa aacatggcga taatactacc taaaatcaat
     5881 aatgggccat tataaaaaat aaaagttggt atgcaagtat ctttaatgtg atcgtgttgt
     5941 ttatcagcat ttaatcctac agtagttccc atggttgttt cactggctgg acttcctgca
     6001 tctcctaaag ctcctgctac tcctaagata aatataataa gtgctgtact aaaaccaagt
     6061 tccaaacaaa taggacaaaa aagcgtagct atgataggta tagttccaaa agaagtacct
     6121 atacccatag tgatgataag tcctattaaa agcatgaaaa atactgctaa aaatttactt
     6181 tgctccatcc aaggaacgac tgaatttaca agatctacta ctgatccact ttcttttaaa
     6241 acttctccat atcctgcagc aacaaggata acaaaagcta taaaacccat cattttaagc
     6301 ccatcatcaa aaacttcatt gacttttgaa aattcaactc cacccaaaat aaccattaaa
     6361 acaaaaccca aaagccctga taaaggcaaa ttcatagtca aaatttgcaa aattaaagtt
     6421 aaaacaagcc cagctaaaac gccccattcc ttacgcgtca tttcaagatt ttctaaatcc
     6481 actttagcaa tttctacttc ttgatactct cttggcttac gataaaacac aaaaagcgct
     6541 agaaaaagtc ctgctatcat acaaatagca gcaaaataca tagtatttgt aacatcattt
     6601 aaagatacac ttacattatt tgcatttaaa ttatctttta aaagatcttg aaaagtaagc
     6661 ccaaaaccta ctggcaaaac catataaggc gtagtaaggc caaaagttaa agcacaagca
     6721 accgctctac gatcaatttt aagtttatta aaaagactta aaagaggtgg aatcaacaaa
     6781 ggtataaaag ctacatgaat aggaattaaa ttttgagaaa aacaagaaat caaagctata
     6841 gacaaaagca ataaatattt tttatgagat ataaaatgac ttactatctt gatcaaatat
     6901 gcagttaaat ttgtctttga aatcgctgca gcaatggctc ctaagagtat atagctaaga
     6961 gctgttttta aattttcttt cattccgctt ataagtatat tcatagtatc tacgagttca
     7021 agatgagaaa atacacctgc aacaagagct gagatcaaaa gactcaaaag cacattaaaa
     7081 cgaaacaaac aaagtaaagt catcaaaaca acactgataa tgataggatt agtaagtaaa
     7141 gtcaaaatca ttccttaaat aattttaaaa atttaattgt agaaaaaact tagttaaaat
     7201 gtaataa
//
LOCUS       DARGED010000084         7150 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.084, whole genome shotgun sequence.
ACCESSION   DARGED010000084 DARGED010000000
VERSION     DARGED010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.084"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..1407
                     /locus_tag="SFZ84_001296"
                     /pseudo
     CDS             1..1407
                     /locus_tag="SFZ84_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1388..3577
                     /gene="hypF"
                     /locus_tag="SFZ84_001297"
     CDS             1388..3577
                     /gene="hypF"
                     /locus_tag="SFZ84_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG8203408.1"
                     /translation="MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDKLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFMQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEVLKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3655..4398
                     /gene="hypB"
                     /locus_tag="SFZ84_001298"
     CDS             3655..4398
                     /gene="hypB"
                     /locus_tag="SFZ84_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG8203409.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            4398..4679
                     /locus_tag="SFZ84_001299"
     CDS             4398..4679
                     /locus_tag="SFZ84_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG8203410.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4663..5754
                     /gene="hypD"
                     /locus_tag="SFZ84_001300"
     CDS             4663..5754
                     /gene="hypD"
                     /locus_tag="SFZ84_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG8203411.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            5751..6725
                     /gene="hypE"
                     /locus_tag="SFZ84_001301"
     CDS             5751..6725
                     /gene="hypE"
                     /locus_tag="SFZ84_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG8203412.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6725..7069
                     /gene="hypA"
                     /locus_tag="SFZ84_001302"
     CDS             6725..7069
                     /gene="hypA"
                     /locus_tag="SFZ84_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG8203413.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
BASE COUNT         2517 a          854 c         1387 g         2392 t
ORIGIN      
        1 tcatttttct atcgatgcag atgaagaaaa tttaaagact ttttgtgatt ctttgaattt
       61 catgagtcat agcgtttttt gaaaaaattt gatgtaaaag cggggcaggg ttttaaccct
      121 tgtataccag aagataaaga attttcaaga ttttcttata ttactcattt aaattctaat
      181 gcttatcaag aaaaaaaact tttaaacaaa aacgaatggg gcgtgttttg tgagtgtgaa
      241 ttttcaagca atttatcaga atttgaaaaa atcaatgaag aaaatttcaa tactttttta
      301 aatcttgcct ttgatttgtt aagtcaagaa aaaaagattt atttgaaaga taaaaatggc
      361 atttatgaat tttctttgtt taagaacgaa tttataggag attttttact tccttgtgat
      421 attaaagcta taaattcagt ttttgtttgt tcaaatgaaa atttaaaact tcttgcaagt
      481 ttagaaaaac ctttgatgaa actaaggctt aatgccatat ttagaaaaaa tcacaatctt
      541 gattttagtg attttaaaat tagacttgct agggatttat tttgttttgc tttaggtttg
      601 aaactttttg aaaatgagta taaattttta agcgtaaaaa agatagaaga gtatcaaaaa
      661 gatttttata tcagtgcttt agatgagcaa gtggtggttt tggaaggctt tgaatttatc
      721 aatactaagg caagagagct tattttttct aaagaagata aaaatatggc aagaatttct
      781 tatcttgtaa gccgttataa agaaaaggct tttattttag agcttagtaa ggattatgaa
      841 gatattttgc ttgtcaataa agagcttaat ttgcttaaac tttccttgcc aaaacacagc
      901 aaagaacttt atgaagaaat taaaaaagat gaaattggtg caaggctttt agaaaatttt
      961 agcaaggaat ttcctctttt agatgaaaat tttgagcttc aaaacaattt ttattctttg
     1021 cttgggttag taggtagagt gctaaatttg ggtaaaaatt tacaagagag tgctagcgag
     1081 cttttaaaaa tcgctgatga gtcaaaaatg cctcgtggag taaagattga ttatcgtttg
     1141 aaagaagata aaagttttga ttatacaaga accttaagat ctgctatgag ttttatgtta
     1201 gcaggtgtag atagtgctaa tatcgcttat ggagcggttg agagtttggc ttatttcttg
     1261 cgtgatactt atgatgaatt aagagagaaa aagcaaagtg atttagcact tataagtgga
     1321 tctttgtttg aacataaatc tttacttaaa aatactttaa aacatcttaa aaattgtcag
     1381 ttaagcgatg cgccacttag ggtataagat caaaatttca ggtctagttc aaggggtggg
     1441 ttttcgcccc ttagtttatg aactagcttt gaaatcaaag ctttttggag aagtaagaaa
     1501 tgatggtttt gggatagaaa tcatccttgc ttgcactcaa aaagaatgtg aaaatttcat
     1561 agaaaattta aaaaatcatc ttccaccttt agcaagaata gataagctta taatcacgca
     1621 aatttctatt tcaaactatg agaattttag cattactcct tctttagaga atacaaaaag
     1681 cacgcctatg ttaagcgatt ttgcgctttg taaggagtgt aaaaaagaat tttttgatga
     1741 aaaaaatcca cgctttttat atccttttat cacttgcaca cattgtgggc cacgctttag
     1801 tattataaaa agtcttcctt atgatagatt taatacctct atgcaagaat tattgatgtg
     1861 tgagttttgt aaaagtgaat atgaagatcc taaaaatagg cgttttcatg cccaacctat
     1921 tagttgtcct aaatgcaaaa tcaatgtttt tcttaaaaat ccaaagggtg aaattttagc
     1981 caaagatcaa gaagctttta tgcaaagtgc gaagttttta aaggaaggta aaattttagc
     2041 cattaaaggc atgggcggtt ttcatctcat gtgtgatgcg tttaatgaag aagttttaaa
     2101 aactctaaga cttagaaaaa atcgccccaa aaaacccttt gctttgatgt gtaaagattt
     2161 acaaagtgct aaagaacttg cctttataga tgaaaaagaa gaagctttgc ttggtggggt
     2221 tttggctcct attgtgattt taaaggcaaa aaaagccttt tctttaatcg ctcctgatgt
     2281 tgataaaatc ggtattatgt tagcttatac gcctttacat cttttgcttt ttgagtattt
     2341 taaaggaagc cttgtagcaa cgagtgcaaa tttaagcgga gaaagtatca ttaaagatga
     2401 gtttaatttg cgtcaaaaac ttgataaagt ttttgatttt tatttggatt atgataggga
     2461 aattatcaat gcaagtgatg acagcatagc tcaagtggta aatggcaaaa ctatgttttt
     2521 gcgtacttca aggggtttaa atccctttta tttggaaaga aattttaata aaaaaggcac
     2581 ttttttagct ttgggtgcgg aacttaaaaa tgaatttgtg attttttatg aaaataaact
     2641 tttaatttct ccttatatag gggatttgaa aagtcttgat gtgcatgaga gattttttaa
     2701 acttttagaa ttttttaaac aaaattatga tttgaaattt gatgcgattt tgtgcgataa
     2761 acacccgcat tttagctatg caaaagaatt tgaagaaagg attaaaattt ctcatcatta
     2821 tgcgcatttt tgtgcggctt attttgaata cgaagaaaat tttgcaaaag atgaaaaggc
     2881 tttagctttt atttgtgatg gaacaggtta tggcgaagat ggtaaaattt ggggtggaga
     2941 agtttttgta ggaaatttaa aagaatatga aagaattgca cattttgaaa atttcactct
     3001 tataaatagt gatattaaaa atatacaaaa tttagcctta agtcttattt ttcattatga
     3061 tttagaagat aaggctaagg attttttagc aaaaattcca aaaattaaac ttaaaaatct
     3121 taaaaaaatt tattctcatt ctaacttaca aacaagttct ttaggacgca ttatcgatgc
     3181 ttttggaagt attgttttta acttagaaaa aagttcttat gaagctcaag ttggcttaat
     3241 gtgtgaagct ttttatgata aaaatcttga tttttcttat aagctttttg tagaaaaagg
     3301 gcaggttaat tttaaaaatt taatcctagg ggctttgcaa gatgaaaaaa ctaaggcgat
     3361 tacaggtatg tttaatgcct tggcaaattt tatcatagat tttagcaaag attatgattt
     3421 aaaagtgctt ttaagcggag gggtttttca aaacaaaacc ttgcttgaaa ttttaaaagc
     3481 taaaaatttt gattttttta tacctttaaa gtacccttgt aatgatagct ccatagcctt
     3541 aggacaaatg gtgcattttt taaatttaga aaaataaagc aaatattcta aaaactcata
     3601 attttttaat gcttttaagg ttaaaatgaa acaaaaaata tataaggaaa gaaaatgtgt
     3661 aaagattgcg gctgctctat aaattcaagc catacgcatg gtcatcatca cgaccaccat
     3721 catgaaaatc caagtttaaa agaaagcaaa accatagaag tgatttctaa aattttaagc
     3781 aaaaatgatg aagaagctaa gcacaataga gcgcatttta atgaagctaa cacgctttgt
     3841 attaatttaa tgagttcccc aggtagtgga aaaaccacgc ttttagaaag cacgattaag
     3901 gctttgaaaa atgaacttaa aattgctgtg attgaagggg atttagaaac caataatgac
     3961 gctctaaggg taaaaaatgc cggagctttg gcgtatcaaa tcactacagg acaaagctgt
     4021 catttggacg cttttatggt gcatgaggct ttgcatcatt tagccattga tgatgtggat
     4081 ttgcttttta tagaaaatgt tggaaatttg gtttgtcctg caagttatga tttaggagag
     4141 catttaaatg tggttttgct ttcgataact gaaggaagtg ataagccgca aaaataccct
     4201 gtgatgttta aaaaggctga tatagtttta atcacaaagg tagatttggc ccatcatttt
     4261 gatttcgata ttaaagaggc gactaggttg attaaagaat taaatcctag agcagatatt
     4321 atcacccttg atgcaaaaaa tggcaccaat atggagcttt ggtataaggt gcttaaactt
     4381 aaaaaggagc ttttttaatg tgtttgtcta taccttctga aattttagaa atcgatgagt
     4441 taaacaatgc tttagtacaa actttaggcg tgaaaagaaa agttaatttg gatttgattg
     4501 atgaaccttt aaaacaaggc gattatgtat taatccatgt aggcgttgct atggaaaaaa
     4561 tcgacaaaga agctgcacta gaaagcatta aaacctatca agaaatagta gaaaaaatga
     4621 atagtggaga gataaaaagt gatgaaggag atttgggttt aaatgaattt catcgatgaa
     4681 tttagagata aagaaagcat tttagcttta aaaaaactca tagaacaaga acttaaaaat
     4741 cctattaata tcatggaaat ttgcggtggg catacgcata gtatcatgaa atatgctttg
     4801 ccttctattt tgccaaagga aattaacttt atccatgggc caggatgtcc tgtttgtgtt
     4861 atgccaagag ttcgcattga tacagctatc aagttagcct ccatgaaaga tacgattttt
     4921 tgtactttag gggatctttt aagggtgcct ggaagtgaaa tttctttact ggatttaaga
     4981 gctaaagggg ctgatgttag agcgctttat tctccgcttg aggttttgga aattgctaag
     5041 caaaatttaa acaaaaatat catctttttt gctataggtt ttgaaactac tacgcctatg
     5101 agtgctttac ttcttcaaaa ggttatagaa gaaaaaataa ataatgtctt ttttcatatc
     5161 aatcatatca cagttccagc acctgtagaa gcgatcatga atgatgaaaa tgtaaaaatc
     5221 aatgcttttt taggtccttc tcatgtgagt gtgataacag gttatggtat ttatgagcct
     5281 ttagcagcaa aatttaaaac ccctatagcg gtgagtggtt ttgagccagt tgatatttta
     5341 gaaagtgtgt taaatatcat aaaacaaagc aatgaaggca cttttaaagt gtataatcaa
     5401 tacaaaagag ccgtaagcaa agaaggcaat gttaaagcac aaaatttagt aaaaaaatac
     5461 tttagggtgt gtgattttga atttcgtggc ttaggactta ttaaagatgg aggcttggag
     5521 ttaaaagaag aatttagcgc ttacgatgcg agtaaaaaat ttgattgtgc ggtgcaaagt
     5581 aaaaatgaaa gcaaagcctg tatttgtggg caaattttaa gaggtttggc caagccttat
     5641 gattgtaaag tttttggcaa ggcttgtacg ccaagaagtc ctataggaag ttgtatggtt
     5701 tctggcgagg gtgcttgtgc ggcgtattat aaatactcaa aggtgaatgc atgaaaaata
     5761 tttccttagc ccacggaggc ggtggagaag agatgaatga gcttttaact aagcttttta
     5821 agatctttga taatgaaatt ttaaacgcaa ataatgatgc agcgattttg ggaaatttgg
     5881 ctttaagcac ggattctttt gttttaagtc cgattttttt agatgaagag gttaatatag
     5941 gtaaactttg tgtttgtggt tctattaatg atgttttgat ggtgggtgct aagccaaaat
     6001 atctaagctt agggcttatc ttagaagaag gttttgagct agaaaaatta gaacgtattt
     6061 taaaaagcat taaagaagaa tgtgaaaaat gtggagttat gttagtttgt ggcgatacta
     6121 aagttgttcc taagggtaaa gcagatgaaa tttatatcaa cactacagcc ttaggtgaaa
     6181 ttatttctaa aaaagaaagt aaaaatatca aagcagggct tagcatactt ctttcaggtg
     6241 atataggaag gcatggagct agtgttttaa tcaaaagaaa tgagttagaa gctaatgtta
     6301 aaagtgattg taaggcttta gataaagagg ttttagagct tttagaaaaa gatataaagg
     6361 ttgtagcaat gagagatgct actcgtgggg gacttagtgc ggttttaaat gagtgggcaa
     6421 agcaaagtgg aaatgatctt ttgatctttg aagaaaaaat catcgttcaa gatgaggttt
     6481 taggactttg cgagcttttt ggttatgaag cctatgagct tgcaaatgaa ggcactttta
     6541 tactttgtgt ggaaaaagaa gatgggttaa aagccttgga aattctaaaa aaatacaatg
     6601 taaatgcgag tattatagga gaagttttag aagagaaaaa agcacgcgtg atcttacaaa
     6661 acgcttatgg agcaaaacgc tttttagaaa gccctaaagg cgaactttta ccaagaattt
     6721 gctaatgcac gaattaagta tagtagaatc tttaatcgaa ctttgtgaag aaaatgcctt
     6781 aaacaataag gcttacaatg tgcaagaaat ttatgtaaaa atcgggcgtt taagcggtat
     6841 agaagtggat ctttttaagc gttgttttga aacttttaaa gaaaactcaa atatttgtaa
     6901 aaatgctaaa ctttttatag aacttgcccc acttgaaatt ttatgcttaa aatgcgatca
     6961 aacaagcatt ttagaagaaa atgtttttaa gtgtcctaaa tgtcaaagta tagaatacaa
     7021 aatcacacaa ggtgaggact tgcaccttat gcgacttgtg atggagtgag ataataaatt
     7081 tagaaacatt gttttttgtt tgattttata taatttctag tattataata aaataaaatt
     7141 tttaatttta
//
LOCUS       DARGED010000085         6998 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.085, whole genome shotgun sequence.
ACCESSION   DARGED010000085 DARGED010000000
VERSION     DARGED010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.085"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            84..308
                     /locus_tag="SFZ84_001303"
     CDS             84..308
                     /locus_tag="SFZ84_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004084762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203414.1"
                     /translation="MGFETDKNNTFVSDNSLSQTKTDYEVKAGNQILHQVGDTQIVTK
                     GDYVIIKAGGVEVVIDSNGLVVKGGEIRAE"
     gene            308..2299
                     /locus_tag="SFZ84_001304"
     CDS             308..2299
                     /locus_tag="SFZ84_001304"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203415.1"
                     /translation="MEALNQKNSLNIRLLSSNNILLHNQEFKLYEIAQGNKNEIKTIF
                     TTNRMGEAHLNASEIFSKEAQSFELILNQSSVYKNKPIYNHRFLLRSYEYGHWCEIKF
                     ERKADKGSINSIRLKSKEFTLENNEKIVRNFYTFGDIVEFEAIYEDAKIKEEQIKWGY
                     VFIQDKNTLDKLNKNQLTNDKKESSLFDEEILKDCFYIEKEEDKALLSSSIIYRHLEN
                     NKAYCGKHLSLQLPNPKDTQEQKTLLVFAYKEIPNYNASYLIRINDYPQITIDCTLAE
                     TLRAHTNKDEISRLGWGVSYICQRLWHDNPSDAKELKDLTFRSSTSQDFIDTIPNETM
                     KTIVKEILPRVEMQQLKTDNTKSRDKARFYAELDWDSFYMKFPIMQELKGEYMNLKKL
                     FGEESDFQKQFEDFLNDTLLDIKNIKNTQEYTMALNIQAMKENKTKNAEVFKLYKKEE
                     TLPETHKAIKDLQKPSDIIDNSLYFQRFDIKNDVFLPHLGLSKFDAFSLQNSIQHEKE
                     VLDKFHSNPKYKQNFALYSIAGAFNILYIPSLIQITRVTRFYNYHSLYAACKKVRAFI
                     IDTVNFNNNGSDQPIGAWDYEKVGFDLYNSIMQYRNTKFHFKYTSPKSFLFPLYNSDF
                     LKTKQYFNLGLDFFLYSSTFLDMDFSHTQMQDTAFIVGK"
     gene            2466..2912
                     /locus_tag="SFZ84_001305"
     CDS             2466..2912
                     /locus_tag="SFZ84_001305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203416.1"
                     /translation="MWVIFVDTTIISLFEIFQMFLIPIILQIIHLTFILYAIIYTYFD
                     MQKISFTKRLGRYIVSFFIGIGLLILSFVMMYAIGYYISSWCDRYYLKIDERNEAIRT
                     ITFYVLVVVFPSIIALLLSYILYKNHKSFFTKILYRILSMIGKDKP"
     gene            3094..3240
                     /locus_tag="SFZ84_001306"
     CDS             3094..3240
                     /locus_tag="SFZ84_001306"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203417.1"
                     /translation="MTDGFGFLAYVFTLPVLILGGISYVCIVFLIRFQSFCGFVCSKS
                     FWIA"
     gene            3622..4437
                     /locus_tag="SFZ84_001307"
     CDS             3622..4437
                     /locus_tag="SFZ84_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203418.1"
                     /translation="MQKFLIVLRICVTLSININAQSPEEAKPSFNCAKAKSKVEKMIC
                     SDKSGELQKLDRLYSKLYFSILKSIPKDTKEGQETKKQMQKFAKNFIDYRDNMRCFLL
                     AKNDDEKEVEEVFNKGRENGIMYENLDSVHFGFKPHHYKPCIARVYKMGILLLSTNTI
                     IDTSFLIDKDTFYTCKGNMILDIFSIKGLVKFRFYNKLFPQGYKETIIEASKALQELS
                     SNGRYTQVCVFEDEGFICTNGGCEFDLDEMQTRVIQPLDNFIQNIDFRKLNAN"
     gene            4427..6967
                     /locus_tag="SFZ84_001308"
     CDS             4427..6967
                     /locus_tag="SFZ84_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203419.1"
                     /translation="MPIKTTNLSYEEFYNKLFSLLRLVEGIRTKIYADSADDPKITIG
                     IGFNIDEDKWRNVILMYKAGILQYTDLENGVYTLANILGKQSQSMQILINTTSKEIKD
                     KINEYKASNKIQKNTYQTGKNPNQNMINLQKDINAILQNNIKIYNQNPENINQKLDEN
                     IVFKLTDNEAIEVKNIISFSEIRALRHKLNKWNANHLTSFSKTELTNPQEFIPLLSIY
                     YQRPARFNPESGLILLQKALKDKNRFLAWFSVRYYADIRQFKNPYYSRRIQEAAMFGL
                     SNKNQNNNIEYFSTSLDIFSYLDFNFREANAKQGLKLSDKYTYLSFMQTYKKCKEVDE
                     KAEYLLREYSTYHTKDKHYYSYVAKEEFQGIADILSLYLSYLNTLTQKNFSLDNIYCI
                     ANYCENLGANKLDNVALLNKTLRQKFEKLEANTPHNILILYPNPTPSIIQIEQPKNTF
                     ITLLIGAKAKIDCTKLIEDQCELMYLKYDPTQEEQQAINPQAFSCSTQEELILKKENE
                     IYFKAVKNNISYFINKNDGILKVALTGNEENAIELYSFAKENQFKILQDKASKMLKIY
                     LKLERYSSEEILLHRGGNFELTLNNLKILDKNGNNHETITKIFLHNCENRRIYESLKL
                     EYQEGIYKSSFKIDLILDENSSFFKRATKCIIATKTLEGFSTSQMHKIGNVAIVSLSS
                     ADKKGGSYTFTNKVSMQDFGENLYLDTEANGYEKQIKNSRENLYITNLKAYKEKEQQN
                     TTDKIPYNETIFIRAYLNNEEKFFFDETIKWAYCIKKEEELECNQSKIKILENLQGND
                     ITFNTSMLSQDDRNKLYNMNEKYQLILFAYFSAPAFKTTQGITHLVLK"
BASE COUNT         2716 a          945 c         1071 g         2266 t
ORIGIN      
        1 taaaagaaac attaaaaatc caaacagaaa aagagacttc tataagaagc aaaaataatc
       61 tactaatcac caccaatgct tcaatgggct ttgaaacaga taaaaataat acctttgtat
      121 ctgataattc attatcgcaa acaaaaacag attatgaagt aaaagcaggc aatcaaatcc
      181 tccaccaagt aggcgatact caaattgtta ctaagggaga ttatgtgatt attaaagcag
      241 gtggagttga agtagtgata gattctaatg ggcttgtggt caaaggtgga gagattaggg
      301 cagagtaatg gaagcactta atcaaaaaaa tagtttaaat attaggcttt taagttctaa
      361 taatattctt ctgcataatc aagaatttaa gctttatgaa atagcacagg gcaataaaaa
      421 tgaaatcaag actattttta caaccaatag aatgggggaa gctcatttaa atgctagtga
      481 aatttttagt aaagaagcac aaagctttga attaatttta aaccaatcta gtgtttataa
      541 aaacaaaccc atctataatc atagattttt attaagaagt tatgagtatg ggcattggtg
      601 tgaaataaaa tttgaaagaa aggcagataa aggctctata aactctatta ggctaaaatc
      661 caaagaattt accttagaaa ataatgaaaa aatagtgcgt aatttctata cttttggtga
      721 tatagtagaa tttgaagcta tttatgagga tgcaaaaatc aaagaagagc aaattaaatg
      781 gggttatgtt tttattcagg ataaaaacac cttagataag ttaaacaaaa accaattaac
      841 taatgacaaa aaggaaagtt ctttatttga tgaagaaatt ttaaaagatt gtttttatat
      901 tgaaaaagaa gaagataaag ccctattatc ttcttctatc atttatagac atttagaaaa
      961 caacaaagct tattgtggaa aacatcttag tttgcaacta ccaaacccta aagacacaca
     1021 agagcaaaaa acactattag tctttgctta taaagaaata cccaattata atgcctctta
     1081 tcttataaga attaatgatt atccacaaat taccattgat tgcactctag cagaaacact
     1141 aagggcacat acaaacaaag atgaaatctc aaggcttggt tggggggtaa gctatatctg
     1201 tcaaagatta tggcatgata atccaagtga tgctaaagaa ttaaaagatt taacctttag
     1261 aagctctact tcacaagatt ttatagatac tatccctaat gaaacaatga aaacaatagt
     1321 aaaggagata ttgcctagag tagagatgca acaattaaag actgacaaca caaaatcaag
     1381 agataaagca agattttatg cggaattaga ttgggatagt ttttatatga agtttcctat
     1441 aatgcaagag ctaaagggcg agtatatgaa tctcaaaaag ctttttggag aagaatctga
     1501 ttttcaaaaa caattcgaag attttcttaa tgatacttta ctagatataa aaaacattaa
     1561 aaatacacaa gaatatacaa tggcactcaa tatccaagca atgaaagaga ataagacgaa
     1621 gaatgcagaa gtctttaagc tatataaaaa agaggaaaca ctcccagaaa ctcataaagc
     1681 tataaaagac ttacaaaaac catcagatat tatcgataat agtttatatt ttcaaaggtt
     1741 tgatataaaa aatgatgtgt ttttaccgca tttaggctta agtaaatttg atgcattttc
     1801 attgcaaaac tccatacaac atgaaaaaga agttttagat aaattccact ctaacccaaa
     1861 atacaagcag aattttgctc tatactctat cgcaggggct tttaatatct tatatatacc
     1921 aagccttata caaatcacga gagttacaag attctataat taccattctt tatatgctgc
     1981 gtgcaaaaag gtgcgtgctt ttatcattga tactgtgaat tttaataata atggtagcga
     2041 tcagcctatt ggggcatggg attatgagaa ggtaggattt gatttatata attcgataat
     2101 gcaataccga aatacaaaat ttcattttaa atatacctca ccaaaatcat tcttatttcc
     2161 cttatataat tcagactttc taaaaacaaa acagtatttt aatctaggct tagatttctt
     2221 tttatatagc tctacatttt tggatatgga ttttagtcat acgcaaatgc aagatactgc
     2281 ttttatagtg gggaagtaag atgttttttg ctggtggtga ttatgagcct tttatatatg
     2341 ggcttagtct tattgcatac tattttctac ccctttattg tctgacgctt ttattgtata
     2401 aatataagcc tcaatatgtg aatcttactc tacatattgg agcttcagtg ttgttatact
     2461 tagctatgtg ggtaatattt gtcgatacaa ctattatcag cctttttgaa atttttcaaa
     2521 tgtttttaat ccccattatc ttgcaaatta tacatcttac ctttatactc tatgctatta
     2581 tctatactta ttttgatatg caaaagattt catttacaaa gagactaggc agatatatcg
     2641 tttcattttt tattgggatt ggactactta tcctttcttt tgtaatgatg tatgctattg
     2701 gatattatat cagctcatgg tgtgatagat attatcttaa aatcgatgag agaaatgagg
     2761 cgattcgcac tataactttt tatgttcttg ttgtggtttt tcccagtata attgcactac
     2821 tccttagcta tatcctctat aaaaatcata agtcattttt tactaagatt ctatatagaa
     2881 tcttatctat gataggcaag gacaaaccat aatgcaaaaa cttatatatc aaaaccacga
     2941 ctaccaacaa atacaaatcc aacaaacaca gaaacatttc aatcttggtt gtgattttat
     3001 agttacaagc aaaggtttta aaaatattaa gattccaaat aatttggata caaagaatct
     3061 attgaggatt atagtaaaaa gtgaggcgag ataatgactg atggatttgg gtttttagca
     3121 tatgtcttta cattgcctgt attgattctt ggtggtatat cttatgtatg tatagtattt
     3181 ttgataagat ttcaaagctt ttgtgggttt gtatgttcaa aaagtttttg gattgcttag
     3241 cttttttcat attatttatt atttttgatt atctgcatta cttgtgaatg ggagttatta
     3301 ataatgtata tctgtggtat ttctttacct ttggtatatt ttttaagaaa attttttatg
     3361 caatcacatt caaatctagc tctaaacgaa ttttcattat ggattatccc aatgagtatt
     3421 ttctctcttt gtattcatag tagcctgtgc gttgctattg catggatgtt aatatttttt
     3481 caaacaaatt atgataccca aacacttcaa tcttggctta gatttctttt tatatagctc
     3541 tatattttta gatattgtgc tagaggagta gttattatgt ttgaagcgac aaaaaataca
     3601 gagtaaatta aaggagttct tatgcaaaag tttttaatag ttttaaggat ttgtgttact
     3661 ttaagtatta atattaatgc tcaatctcca gaagaagcta aacctagctt taattgtgct
     3721 aaagcaaaaa gcaaggttga aaagatgatt tgtagtgata aaagtgggga gttacaaaaa
     3781 cttgatagat tatattctaa actctatttt tcaatactaa agagtatccc aaaagataca
     3841 aaagaggggc aagagacaaa aaaacaaatg caaaaatttg ctaaaaattt tatagattat
     3901 agagacaata tgcgttgttt tttattggca aaaaatgatg atgaaaaaga agtggaagaa
     3961 gtatttaaca aaggacgcga aaatggaata atgtatgaaa atcttgactc ggttcatttt
     4021 ggttttaaac cacatcatta caagccttgt atagcaaggg tttataaaat gggaatttta
     4081 ttgcttagca ccaatactat catagataca agttttctca tagacaaaga tactttttat
     4141 acttgcaagg gcaatatgat actcgatatt ttttctatta aaggtttagt aaagtttaga
     4201 ttttacaata aattgtttcc acaaggatat aaagaaacca ttatagaagc ctccaaagca
     4261 ttacaggaat taagctcaaa tggtcgctat actcaagtat gtgtgtttga agatgaggga
     4321 tttatatgca caaatggagg gtgtgagttt gatttagatg aaatgcaaac tagagttatt
     4381 cagccacttg ataattttat tcaaaatata gattttagga aactaaatgc caattaagac
     4441 aacaaattta agctatgagg aattttataa taaacttttt agtctattaa ggttggttga
     4501 agggattaga acaaagattt atgctgatag tgcagatgat ccaaaaatta ccattggtat
     4561 aggatttaat attgacgaag ataaatggag aaatgttatt ttgatgtata aagcagggat
     4621 tttgcaatac acagacttag aaaatggcgt ctatacccta gctaatatac taggcaaaca
     4681 atcacaatct atgcaaattc tcattaatac aacttctaaa gaaataaaag ataagattaa
     4741 tgaatataag gcaagtaata aaattcaaaa aaatacctat caaacaggta aaaacccaaa
     4801 tcaaaatatg attaatttac aaaaagatat caatgccatt ttgcaaaata atataaaaat
     4861 ctacaatcaa aatcctgaaa atattaacca aaaacttgat gaaaatatag tttttaagct
     4921 tacagataac gaagcaatag aagttaaaaa tatcatcagt tttagtgaaa ttagggcact
     4981 aagacacaaa ttaaacaaat ggaatgcaaa tcatcttact tcttttagta agacagaatt
     5041 aaccaatcca caagagttta ttcccttatt gtctatttat tatcagcgtc cagcaagatt
     5101 taacccagag agtggactca tcttgcttca aaaagccctt aaagataaga atagattctt
     5161 agcgtggttt tctgtgcgtt attatgctga tatacgacaa ttcaaaaacc cttattattc
     5221 tcgcagaatc caagaagccg ctatgtttgg cttaagcaat aagaatcaaa ataataatat
     5281 tgaatatttt tcaacaagtc ttgatatttt ctcttatctt gattttaact ttagagaagc
     5341 caatgccaag caaggactga agctgtcaga taaatacact tacctttctt ttatgcaaac
     5401 ttataagaaa tgcaaagaag ttgatgaaaa agcagagtat ctcttaagag aatacagtac
     5461 atatcatact aaagacaaac actattattc ttatgttgct aaagaagaat ttcagggtat
     5521 agctgatatt ctctccctct atctatccta cctaaacacc ctcactcaaa aaaattttag
     5581 cttagataat atttattgta ttgctaatta ttgtgagaat ttaggcgcta ataaattgga
     5641 taatgttgcc ttgcttaata aaactttaag acaaaagttt gaaaaactag aagcaaatac
     5701 accccataat attcttatcc tctatccaaa tcctactcca tctattatac aaatagaaca
     5761 acctaaaaat acttttatta ccctacttat aggagcaaaa gcaaaaatag attgcactaa
     5821 attgatagaa gatcaatgtg agctaatgta tttaaaatat gatccaacac aagaagaaca
     5881 acaagcaatt aatccacaag ctttttcttg tagcacccaa gaagaactta ttttaaaaaa
     5941 agaaaatgaa atatacttta aagcagtaaa aaacaatata tcatatttta ttaataaaaa
     6001 cgatggaatt ttaaaagttg ctcttactgg caatgaagaa aatgctatag aattatacag
     6061 ttttgctaaa gaaaatcaat ttaaaatttt acaagataaa gcttcaaaga tgctaaaaat
     6121 ctatttaaaa ctagaaagat atagtagcga agagatttta ttacatagag ggggaaattt
     6181 tgaattaaca cttaataatc ttaagatttt agataaaaat ggaaataatc atgaaaccat
     6241 cactaaaata tttcttcata attgtgagaa tagaaggatt tatgaaagtt taaagctaga
     6301 gtatcaagaa ggcatttata agagcagttt taaaattgat ttaattttag atgaaaactc
     6361 ttcttttttt aaaagggcta caaaatgtat tatagctaca aaaaccttag aaggctttag
     6421 cacaagtcaa atgcataaaa ttggaaatgt ggcaatagtc tctttaagtt ctgcagataa
     6481 gaaaggtgga agctatactt ttacaaataa ggtaagcatg caagattttg gagaaaatct
     6541 ttatttagat actgaggcaa atgggtatga aaaacaaata aaaaattcaa gagagaattt
     6601 atatatcaca aatttgaaag cttataaaga aaaagaacag caaaatacta ctgataaaat
     6661 cccttacaat gaaactattt ttattagagc ctacttaaat aatgaggaga aatttttctt
     6721 cgatgagaca attaaatggg catattgtat aaaaaaagaa gaggaattag aatgtaatca
     6781 atctaaaatt aaaattttag aaaatcttca aggaaatgat ataaccttta atacttctat
     6841 gctttcacaa gatgatagga ataaacttta taatatgaat gaaaaatatc aattaatctt
     6901 atttgcttat tttagtgcac ctgcatttaa aacaacacaa ggaataacgc atttagtgtt
     6961 aaaatgacta aagatttaaa ctatacaaaa caaagcca
//
LOCUS       DARGED010000086         6941 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.086, whole genome shotgun sequence.
ACCESSION   DARGED010000086 DARGED010000000
VERSION     DARGED010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.086"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..645
                     /locus_tag="SFZ84_001309"
     CDS             <1..645
                     /locus_tag="SFZ84_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8203420.1"
                     /translation="PRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDAC
                     EIAFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLEFLSKQRHFCWSVWA
                     KCFKKDIILKSFEKIKIDERLSYGEDVLFCYIYFMFCEKIAVFKICIYHYEFNPNGRY
                     ENKNKEILNQNYRDKKKSNELIKKLSLDFENDTFHQKLFEVLKREEVGVKNRLK"
     gene            complement(585..1334)
                     /locus_tag="SFZ84_001310"
     CDS             complement(585..1334)
                     /locus_tag="SFZ84_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CatB-related O-acetyltransferase"
                     /protein_id="HEG8203421.1"
                     /translation="MKNNQLESVAGLGIEEYYAFKFSNILHEMGSFSFRGSFLPHYTK
                     VGRYCSISDGVSMFNFQHSMDRISTASFTYETNHSFINDACQNHINKTFPIVNHNPSS
                     SITHLIIQDDVWIGKDVLLKQGITLGTGCVIGQRAVLTKDVLPYAIVAGIPAKIIKYR
                     FDEKTIERLLKIQWWRYHFADFYDIDLNLKINQYLDLLEEKIIKKSISYYNPNKLYFR
                     DILELKSKKFLIYFNLFFTPTSSLFKTSNNF"
     gene            complement(1458..2123)
                     /locus_tag="SFZ84_001311"
     CDS             complement(1458..2123)
                     /locus_tag="SFZ84_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HEG8203422.1"
                     /translation="MSLAIIPARGGSKGIKNKNLVLLNNKPLIYYTIKAALNAKSISK
                     VVVSSDSDEILNYAKSQNVDILKRPISLARDNTTSDKVLLHALKFYKDYEDVVFLQPT
                     SPLRTNIHIDKAFNLYKNSNANALISVSECDNKILKAFVCNDCGDLAGICNDEYPFIP
                     RQKLPKTYMSNGAIYILKIKEFLNNPSFLQSKTKHFLMDESSSLDIDCLEDLKKAEQI
                     WKK"
     gene            complement(2120..2452)
                     /locus_tag="SFZ84_001312"
     CDS             complement(2120..2452)
                     /locus_tag="SFZ84_001312"
                     /inference="COORDINATES: protein motif:HMM:NF018059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203423.1"
                     /translation="MIKRRNSSFIERRVSKKSQWIDPKGLIEELYSEQQVLSQGVKIL
                     QAPLLQWHFPALKYRRNDYQQYLDILSLEEFQAFHRKSKEAKKIDFAMLKRPVIEQIL
                     KKFQGEIK"
     gene            complement(2445..3068)
                     /locus_tag="SFZ84_001313"
     CDS             complement(2445..3068)
                     /locus_tag="SFZ84_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8203424.1"
                     /translation="MLKKIISLYKRYSISKKLVLDNEHFIKENKNIYGKKHKGFFDLD
                     EKAKDVKSPLNPWGFIRVKNEALTLRVSLESILPALQRGIIAYNDCDDGSEELILEFC
                     KQYPNFIAKKYPYKVDLENPKNEENKLYSYYNWAASFIPLDEWFIKIDVDHYYDAKKL
                     YKSFYRIDQENKALCYPRINFIILNGNIYVQNSGNYGFIGGGGSTLD"
     gene            complement(3061..4185)
                     /gene="neuC"
                     /locus_tag="SFZ84_001314"
     CDS             complement(3061..4185)
                     /gene="neuC"
                     /locus_tag="SFZ84_001314"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG8203425.1"
                     /translation="MKKILFITGTRADYSKIKSLMYRVQNSSEFELYIFATGMHLSKN
                     FGYTVKELYKNGFKNIYEFINYDKYFSTDKALATTIDGFSRYVNELKPDLIVVHGDRI
                     EPLAAAIVGALNNILVAHIEGGEISGTIDDSLRHAISKLAHIHLVNDEFAKRRLMQLG
                     EDEKSIFIIGSPDLELLNDNKISLNEAKKYYDINYENYALLMFHPVTTEITSIKNQAD
                     NLVKALIQSNKNYIVIYPNNDLGFELILQSYEELKNNPRFKLFPSLRFEYFITLLKNA
                     DFIIGNSSCILKEALYLKTAGILVGSRQNGRLGNENTLKVNANSDEILKAINTIHKKQ
                     DLFSAKLEILDSSKLFFEYLLSGEFFKLSTQKVFKDIKHA"
     gene            complement(4182..5222)
                     /gene="neuB"
                     /locus_tag="SFZ84_001315"
     CDS             complement(4182..5222)
                     /gene="neuB"
                     /locus_tag="SFZ84_001315"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HEG8203426.1"
                     /translation="MKEIKIQNILISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSA
                     GAKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALNYKDELALKEYTEKLGL
                     VYLSTPFSRAGANRLEDMGVSAFKIGSGECNNYPLIKHIAAFKKPMIVSTGMNSIESI
                     KPTVKILLDNEIPFVLMHTTNLYPTPHNLVRLNAMLELKKEFSCMVGLSDHTTDNLAC
                     LGAVALGACVLERHFTDSMHRSGPDIVCSMDTQALKELLIQSEQMAIMRGNNESKKAA
                     KQEQVTIDFAFASVVSIKDIKKGEVLSMDNIWVKRPGLGGISAAEFENILGKKALRDI
                     ENDTQLSYEDFA"
     gene            complement(5223..6098)
                     /locus_tag="SFZ84_001316"
     CDS             complement(5223..6098)
                     /locus_tag="SFZ84_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HEG8203427.1"
                     /translation="MKKVIIAGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKK
                     CKAVFYNTYFFFEQYYTLKHLIQNQEYETELIMCSNFNLAHIENENFLKNFYDYFPDA
                     HLGYDFFKQLKEFNAYFKFHEIYLNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGS
                     SYAFDTKQENLLKLAPDFKNDRSHYIGHSKNTDLKALEFLEKTYKIKLYCLCPNSLLA
                     NFIQLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFPKKINFKKIKIKENVYYKLIKD
                     LLKLPSDIKHYFKGK"
     gene            6187..>6941
                     /locus_tag="SFZ84_001317"
     CDS             6187..>6941
                     /locus_tag="SFZ84_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203428.1"
                     /translation="MSKISIILPTYNVEQYIARAIESCINQTFKNIEIIVVDDCGSDK
                     SIDIAKEYAKKDDRIKIIHNEENLKLLRARYEGVKVANSPYIMFLDPDDYLELNACEE
                     CMKILKNNEIDLLFFNAFVLENNNKIERKLNFQEKCYAKKDFLKELLKTKNLFWTVWA
                     KVIKKELYLKAVGLISLENAKINMAEDVLLYYPLINISNTIFHLSKNLYNYQINNFSI
                     TKTLTLQNIKTNIQEQDNVLYLLKKMQYNYNFN"
BASE COUNT         2336 a          999 c          977 g         2629 t
ORIGIN      
        1 ccaagaataa aaatctttca aaatgaggaa aatttaggca cttttgcaag tagaaatttg
       61 ggggttttgc attctagttc tgattttata atgtttttag atagtgatga ttttttaaca
      121 cttgatgctt gtgaaatagc gtttaaagag atgaaaaaag gttttgattt actttgtttt
      181 gatgcctttg tgcatagggt aaaaaccaaa caattttatc gttttaaaca agatgaagtt
      241 tttaatcaaa aggaattttt agaattctta agcaaacaaa ggcatttttg ctggtcggtt
      301 tgggcgaagt gctttaaaaa agatatcatc ttaaaaagtt ttgaaaaaat taaaatagat
      361 gagcgtttga gttacggcga agatgtgctt ttttgttata tttattttat gttttgtgag
      421 aaaatagccg tttttaaaat ttgcatttat cattatgaat ttaatccaaa tggaagatat
      481 gaaaacaaaa ataaagaaat tttaaatcaa aattatagag ataaaaagaa aagcaatgaa
      541 cttataaaaa agctttcttt agactttgaa aatgatacct ttcatcaaaa attatttgag
      601 gttttaaaga gagaggaagt aggggtgaaa aatagattaa aatagattaa aaattttttt
      661 gattttagtt ctaaaatatc tctaaaataa agtttatttg gattatagta ggaaattgat
      721 ttttttatga ttttttcttc tagtaggtca agatattggt ttatttttaa attaagatca
      781 atatcataaa aatcagcaaa atgatatctc caccattgaa tttttaataa tctttctatt
      841 gttttttcat caaatctata tttgataatt ttggctggaa ttcctgcaac tatagcataa
      901 ggtagtacat ctttagtaag tacagctctt tgtcctatga cacatccagt cccaagtgtg
      961 ataccctgtt taagcaaaac atcttttcct atccaaacat catcttgtat aattaaatgc
     1021 gttattgatg agcttggatt atggttaact ataggaaatg ttttgttgat gtgattttgg
     1081 caagcatcgt taataaaact atgatttgtt tcataggtaa aacttgcagt gctgattcta
     1141 tccatagaat gttgaaagtt aaacatagaa accccatcag aaattgaaca ataccttcca
     1201 acttttgtat aatgaggtag aaaagatccg cgaaaagaaa atgaacccat ttcatgcaag
     1261 atattgctaa atttaaaagc ataatattct tctatcccca gcccagccac actctctagt
     1321 tgattgtttt tcaatggaat ggttataaaa tctttggttt ttagtcttga aaatcttcta
     1381 ggattttcta tgtaagtttt ttgtataaat attatattgc tttaataaat ttaatatatt
     1441 tttattgcat tttaaggtta ttttttccat atctgttcag ccttttttaa atcctctaaa
     1501 cagtcaatat ctaaacttga gctttcatcc attaaaaaat gcttagtttt gctttgtaaa
     1561 aagctaggat tgtttaaaaa ttcttttatc tttaaaatat aaattgcacc attgctcata
     1621 taagttttag gcaatttttg ccttggtata aaaggatatt catcattaca aatccctgct
     1681 aaatcgccac aatcattgca aacaaaggct tttagaattt tattatcaca ttcgcttacg
     1741 ctaattaggg catttgcatt gctattttta taaagattaa aagctttatc aatatgaata
     1801 tttgttctta gcggcgaagt gggttgtaaa aaaactacat cttcataatc tttgtaaaat
     1861 tttagagcat gtaaaagcac tttatcgctt gtagtattat ctcgtgcaag gctaattggg
     1921 cgttttaaaa tatcaacatt ttggcttttt gcataattta aaatttcatc actatcactg
     1981 cttacaacga ctttactaat gcttttagca tttagtgcag ctttaatggt gtagtaaatt
     2041 aaaggtttat tgtttaataa aaccaaattt ttatttttaa taccctttga gccaccacga
     2101 gcagggatta ttgctaagct cattttatct ctccttgaaa tttctttaat atttgctcga
     2161 ttacagggcg ttttagcatg gcaaagtcta tttttttagc ctctttgctc ttacgatgaa
     2221 aggcctgaaa ttcttctaaa ctcaagatat ctaaatattg ttggtaatcg tttcggcggt
     2281 attttaaggc aggaaaatgc cactgaagta ggggagcttg tagtattttc actccttgag
     2341 ataagacttg ttgctcggag tagagttctt ctataagtcc cttaggatct atccattggc
     2401 ttttttttga aacccttctt tctataaagc tactatttct tcttttaatc aagagttgat
     2461 cccccccccc ctatgaatcc ataatttcca ctattttgca cataaatatt tccatttaag
     2521 attataaaat taattcttgg gtagcataag gctttatttt cttgatcaat cctataaaaa
     2581 ctcttataaa gcttcttggc atcgtagtaa tgatccacat cgatttttat aaaccactca
     2641 tctaagggta taaaagatgc tgcccaattg taataagagt aaagtttatt ttcttcattt
     2701 ttaggatttt ctagatctac tttataagga tattttttag caatgaagtt gggatattgc
     2761 ttgcaaaatt ctaaaataag ctcttcactc ccatcatcac agtcgttgta agctataatt
     2821 cctctttgta aagcaggtag tatactttct aaagaaactc ttagggttaa agcttcattt
     2881 ttaaccctga taaatcccca aggattaagg ggtgatttca catccttagc cttttcatca
     2941 aggtcaaaaa agcccttatg tttttttcca tagatgtttt tattttcctt aatgaaatgc
     3001 tcattatcta aaaccaattt tttagaaatc gagtatcttt tatataaaga aatgattttt
     3061 ttaagcatgt tttatatcct taaaaacttt ttgtgtgctg agtttaaaaa attctccgct
     3121 taataaatat tcaaaaaata attttgagct atctaaaatc tctaacttag cgctaaataa
     3181 atcttgtttt ttatgaatgg tgttaatagc ttttagtatt tcatcactat ttgcattaac
     3241 ttttagtgta ttttcattgc caagtcttcc attttgtctt gagccaacta aaatccctgc
     3301 tgtttttaag tataaggcct cttttaaaat acaacttgaa ttacctatta taaaatcagc
     3361 attttttaac aaagttataa aatactcaaa tctaagcgat ggaaaaagct taaatctagg
     3421 gttattttta agttcttcat agctttgcaa gattaattca aaacctaaat cattatttgg
     3481 ataaataaca atataatttt tgttactttg tatcagtgct tttactaaat tatctgcttg
     3541 atttttaatg cttgtaattt cagttgtaac aggatgaaac ataagcaaag cgtagttttc
     3601 ataatttata tcataatatt tttttgcttc attaagtgaa attttattat cgtttaaaag
     3661 ttctaaatca ggcgaaccta tgataaaaat agatttttca tcttctccaa gctgcattaa
     3721 acgccttttt gcaaactcat catttactaa atgaatatgt gctagttttg atatagcgtg
     3781 gcgtaagcta tcatcaatag ttcctgaaat ctctccacct tcaatatgtg ctactaagat
     3841 attgtttaat gctccaacaa tagctgctgc taaaggctcg attctatctc catgtactac
     3901 gattaaatca ggttttagct catttacata tcttgaaaat ccatcaattg tagtggctaa
     3961 agccttatcg gttgaaaaat atttatcgta atttataaat tcataaatat ttttaaagcc
     4021 atttttataa agttctttaa ctgtatagcc aaaatttttg cttaagtgca ttcctgttgc
     4081 aaagatgtaa agttcaaatt cgcttgagtt ttgcaccctg tacattaaag atttaatctt
     4141 agaataatca gccctagtgc ctgttataaa aaggattttt ttcacgcaaa atcctcatag
     4201 cttaactgag tatcattttc tatatctctt aatgcttttt tgcctaaaat attttcaaat
     4261 tcagctgcac taattccacc aagtccaggt cttttaaccc aaatattatc catagataaa
     4321 acttcgcctt ttttaatatc tttaatgctg actacgcttg caaaggcaaa atcaattgtg
     4381 acttgctctt gcttagctgc ttttttactt tcattatttc ctctcattat agccatttgc
     4441 tcactttgta taagaagctc ttttaaagcc tgtgtatcca tagaacaaac tatatcaggg
     4501 ccacttctat gcatactatc agtaaaatgt ctttcaagca cacaagcacc aagtgcaacc
     4561 gcacctaaac acgcaagatt atctgttgtg tggtcgctta agcctaccat acaagaaaat
     4621 tcttttttta attcaagcat agcgtttaat cttacaagat tatgcggggt tgggtaaaga
     4681 ttggttgtgt gcattaaaac aaagggaatt tcattgtcta ataagatttt tacagttggt
     4741 tttatacttt caatactatt catccctgtg ctaactatca taggcttttt aaaggctgct
     4801 atgtgtttaa taagcggata attattacac tcacctgaac caatcttaaa agcactaact
     4861 cccatatctt ctaagcggtt tgcacctgca cgagaaaaag gtgtgctaag ataaacaaga
     4921 cctaattttt ctgtgtattc tttaagtgct agctcatctt tataattcaa agcacatttt
     4981 tgcataatct cataaatgct tatttttgca ttaccaggaa ttactttttt agcggcttta
     5041 ctcatctcat cttcaacgat gtgggtttga tgctttataa tcttagcacc tgcgctaaag
     5101 gctgcatcta ccataatttt agctagttct aaactaccat tatgattaat gcctatttca
     5161 ggtacgacta agggtgcttt ttcttcactt atgagtatat tttgtatttt tatttctttc
     5221 atttattttc ctttgaaata atgctttata tcactaggta attttaatag atcttttatc
     5281 aacttgtaat aaacattttc tttaattttt atttttttaa aattaatttt ttttggaaat
     5341 tttccatagg cctcactaga aggtatgagt atatctttag tatagttatt tttttcttgt
     5401 atgataaaat ttgaatttaa atttggcgct agttgtataa aatttgctaa aagactgtta
     5461 ggacataaac aatatagttt tattttgtaa gttttttcta gaaattctaa agcttttagg
     5521 tctgtatttt tgctgtgtcc gatatagtgt gagcgatcat ttttaaaatc aggggctagt
     5581 tttaaaagat tttcttgttt ggtatcaaaa gcataagatg atccattttg ataaaaatcg
     5641 attcccgaaa gataaatttc tttgtatcct agggctatgg ctactgcaca catatagacc
     5701 cctgaggtaa ttctttgatt gagataaatt tcgtgaaatt taaaataagc attaaattct
     5761 ttaagttgtt taaagaaatc atatcccaaa tgagcatcag gaaaataatc gtaaaagttt
     5821 tttaaaaaat tttcattttc tatatgagct agattaaaat tagaacacat gattaattct
     5881 gtctcgtatt cttgattttg gattaaatgt tttaaagtgt agtattgttc aaaaaaaaaa
     5941 taggtattgt aaaatactgc tttgcatttt ttaccaagat agtatttatc ttcaaaataa
     6001 aattgattac atctaaatac atcaaaatca tttggcagtc ttgaataatc aatttctttt
     6061 aagcttggcc catttccagc aataataact tttttcataa ttattttcca tcaagattta
     6121 tttttaacga ttttatcaaa atagatttta tgttataatt aaattataat aaaataagga
     6181 ataaacatgt ctaaaatttc aatcatctta ccaacttata atgtggaaca atatatagca
     6241 agggcaatag aaagttgtat caatcagact tttaaaaata tagaaataat tgtagttgat
     6301 gattgtggaa gtgataaaag tatagatata gctaaagaat atgccaaaaa agatgataga
     6361 ataaaaatca tacataatga agaaaattta aaacttttaa gagctagata tgaaggtgta
     6421 aaagtagcaa actctcctta tataatgttt ttagatcctg atgattattt agaacttaat
     6481 gcttgtgaag aatgtatgaa aattttaaaa aacaatgaaa tagatttatt attttttaat
     6541 gcatttgtat tggaaaataa taataaaata gaaagaaagt tgaattttca agaaaaatgt
     6601 tatgcaaaaa aagatttttt aaaagaacta ttaaaaacta aaaatttatt ttggacagtg
     6661 tgggcaaaag ttataaaaaa agaattatat ctcaaggctg ttggtttaat atcgctagaa
     6721 aatgctaaaa taaatatggc tgaagatgtt ttattatact accctttgat aaatatttca
     6781 aatactatat ttcacttgag taaaaattta tacaattatc aaataaataa tttctctata
     6841 accaaaacat taacattgca aaatataaaa acaaatatac aagaacaaga taatgttcta
     6901 taccttctaa aaaagatgca atataattac aattttaact t
//
LOCUS       DARGED010000087         6769 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.087, whole genome shotgun sequence.
ACCESSION   DARGED010000087 DARGED010000000
VERSION     DARGED010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6769
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.087"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            43..402
                     /locus_tag="SFZ84_001318"
     CDS             43..402
                     /locus_tag="SFZ84_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEG8203429.1"
                     /translation="MDIIFANQSLYYIPLKELKQNILEFYELLNTGGILFATMMSKKN
                     YYFSHSQKEEKNGLSKVEIKGRLNETSFIHFIDKVEDLENLFQPFETLFLGDYDPINF
                     YNFEGSAHHYVYIGIKK"
     gene            442..1446
                     /gene="legI"
                     /locus_tag="SFZ84_001319"
     CDS             442..1446
                     /gene="legI"
                     /locus_tag="SFZ84_001319"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG8203430.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDIKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNMLCK
                     NGAKRQNITLLHCTTEYPAPFNEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCTQIRQIQKAMGDGIKKASKSERKNI
                     NIVRKSLVAKKDIQKGEIFNEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELICE
                     "
     gene            1439..2593
                     /gene="legG"
                     /locus_tag="SFZ84_001320"
     CDS             1439..2593
                     /gene="legG"
                     /locus_tag="SFZ84_001320"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG8203431.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSTFSDAFKDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKTLEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDSEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNVNLDTILHKNFIDL"
     gene            2602..3627
                     /locus_tag="SFZ84_001321"
     CDS             2602..3627
                     /locus_tag="SFZ84_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8203432.1"
                     /translation="MDIDKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEELLKLSAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKTNPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIVQRLKNQ
                     NFEIFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLALQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            3624..4529
                     /gene="ptmF"
                     /locus_tag="SFZ84_001322"
     CDS             3624..4529
                     /gene="ptmF"
                     /locus_tag="SFZ84_001322"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEG8203433.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFEKTQIY
                     CSLKECHLNEFDLFIIANITTEHFNTLKALNELVKDKIILVEKPLFEKVQNFTSSKNH
                     IYVAYLLRFHPVIVALKKLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFGNLELIYSQNAKISELDITSDDFAFLVLKNSQKAKIHIELDYF
                     SKFNKREIIIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLEICDEVRKKNG"
     gene            4522..5229
                     /gene="legF"
                     /locus_tag="SFZ84_001323"
                     /gene_synonym="ptmB"
     CDS             4522..5229
                     /gene="legF"
                     /locus_tag="SFZ84_001323"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG8203434.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRAAKFPVMRDALLRSEEHFKMRFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSSKDF"
     gene            5229..5999
                     /gene="ptmA"
                     /locus_tag="SFZ84_001324"
     CDS             5229..5999
                     /gene="ptmA"
                     /locus_tag="SFZ84_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEG8203435.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKERLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDICGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            5999..>6769
                     /locus_tag="SFZ84_001325"
     CDS             5999..>6769
                     /locus_tag="SFZ84_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203436.1"
                     /translation="MIFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSIKNNGGGYSENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGSGILFK
                     ALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMILQTSSLDIEFFSNFCSS
                     KPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQF
                     VYNLPSMITHPSYKELLSKRKGISDTAIIVSTGPSLTKQ"
BASE COUNT         2610 a         1007 c         1078 g         2074 t
ORIGIN      
        1 atagaaccaa attctagcat caaaggactt tttgatgaaa atatggatat tatctttgca
       61 aatcaaagtc tttactacat acctctaaaa gaacttaaac aaaatatttt agaattttac
      121 gaacttttaa acacaggtgg aatacttttt gctacaatga tgagcaagaa aaattattat
      181 ttctcccaca gccaaaaaga agaaaaaaat ggcttgagta aagttgaaat caaaggtaga
      241 ctaaacgaaa cgagttttat acatttcatc gataaagtcg aagatctaga aaatcttttt
      301 caaccttttg aaactttatt tctaggagat tatgatccta ttaattttta taattttgaa
      361 ggatcagcac accattatgt ttatataggt attaaaaaat aaaattttgc ctttatttta
      421 aggcaaaata aaggcaaaac tatgaaaaaa accctcatca tcgcagaagc aggagttaat
      481 cacaatggtg atttaaattt agctaaaaag ttaatagaaa tcgcagcaga ttcaggcgct
      541 gattttgtta aatttcaaag ttttaaagcc aaaaactgta tcagcacaaa ggctaaaaaa
      601 gcaccctatc agcttaaaac cacagctagt gatgagagtc agcttcaaat ggtacaaaaa
      661 ctcgaactcg atattaaagc tcataaagag cttatcttac acgcaaaaaa atgcaatatt
      721 gcctttcttt ctactccttt tgatcttgaa agtgtagatc ttttaaatga gttaggctta
      781 aaaatcttta aaattccaag cggagaaatc accaatctac cctatcttaa aaaaattgca
      841 aagcttaata aaaaaatcat actttcaaca ggtatggcaa atttaggcga gatagaagaa
      901 gctttaaata tgctttgtaa aaatggcgct aaacgccaaa atatcactct tttacactgc
      961 actacagaat accctgcccc ttttaatgaa gtcaatctta aagccatgca aagcttaaaa
     1021 gacgctttta agcttgatgt gggttattct gatcacactc aaggcataca catttctcta
     1081 gctgcagttg ccttgggagc ttgtgtaata gaaaagcatt ttactctaga caaaaatatg
     1141 tcagggcctg atcataaagc aagcctagaa cctcatgaac taaaaacgct ttgtactcaa
     1201 ataagacaaa tacaaaaggc tatgggtgat ggcataaaaa aagcaagcaa aagcgaaaga
     1261 aaaaatatca acatagtaag aaaaagttta gtcgctaaaa aagatataca aaaaggagaa
     1321 atttttaacg aagaaaatct tactaccaaa cgcccagcaa atggtataag tgctatgaga
     1381 tatgaagagt ttttaggtaa aattgctaca aaaaactaca aagaagatga gcttatctgt
     1441 gagtaaaaga aaaatttgta tagtcagtgc aacaagggct gaatggtatc ttttaagaaa
     1501 tttatgtcat gaaattcaaa acgataaaga tctaagcctt caaatcatcg ctacaggggc
     1561 acatttaagc cctgagtttg gactcactta taaagaaata gaaaaagaat ttaaaataac
     1621 taaaaaaatc cctatcctgc ttgcaaacga tgataaaata agcctttgta aaagtatgag
     1681 tttagctttt agtactttta gcgatgcttt taaagactta aagcctgata tggtggtcat
     1741 tttaggcgat cgttatgaaa tgcttagcgt agcaagtgta tgtctattga tgcacatacc
     1801 tttagtgcat ttatgtggcg gggagcttac tttaggggct atcgatgata gtataagaca
     1861 cagcatttca aaaatgtcac atttacattt tgtaagtcat gaaatttata aaaaaaggct
     1921 tttgcaactt ggagaagaag aaaaaagggt ttttaatata ggttctttag cttctactat
     1981 cataaaaaat atgaattttt taaacaaaaa agatttagaa aaaaccttag aaatgaaact
     2041 agataaagaa ctttacttaa tcacttatca tcctttaacc ttaaatgtaa aaaatactca
     2101 aaaagagatt aaaaccttac ttaaaaaact tgacaccctt aaaaatgcaa gtttgatttt
     2161 taccaaagca aatgccgatg aaaatggact tttaatcaat gaaattttgc aaaattactg
     2221 ccaaaaaaac tcacacaagg ctaaactttt tgataatctt ggctcacaaa aatacctaag
     2281 tcttatgaaa atagccaagg ccatgatagg caattcttca agtggtatta gtgaaagtcc
     2341 tttttttaaa actccttgca ttaatatagg cgatagacaa aaagggcgtt taagaactca
     2401 aaatatcatt gattccgaaa tcaacgatct tgatcaagct tttgaaaaat tagaaagcaa
     2461 agaatttaaa caaaatttaa aaaattttaa aaacccttat gataatgata aaaatcccaa
     2521 taaattcata aaaacttgcc taaaaaatgt aaatttagat acaattttac ataaaaattt
     2581 catcgattta taaggcttag tgtggatata gacaaactca aactcacccc tgattctagc
     2641 ataaaagaag ctttaaaaat agtcgggcaa gaacgcgtta gactaggcat tatagttgat
     2701 aaaaaggata aatttttagg agtcattagc gattcaaaca tcagaaaagc tttaattagc
     2761 ggcaaaactt taaaagatag tatcaaggat atttacacta aaaatcccat caccataaaa
     2821 gaaaacacaa gcaaagaaga acttttaaaa ctttctgcca aaaccgatat ttatgatttt
     2881 cctgttttag atgaaaaagg gcaaattctt tccataaaat ctgtctcatc gcttttaaaa
     2941 accaatccaa actccattat catcatggct ggaggcttag gctctcgctt aaaagagctg
     3001 actaaagata ctccaaaacc tatgttaaaa gtaggcaaaa aacctatttt agaaagcata
     3061 gtccaaagac ttaaaaatca aaattttgaa atttttatct tttgtgtgaa ttataaaaaa
     3121 caaatcatag aagattattt tcaaaaaggg caaaaatttg gggttaaaat ttcttatatt
     3181 aaagagcgta aaaaactagg tacagcaggg gctttaagcc ttataaaaca agaatttaaa
     3241 gaaagtttta tcgttatgaa tgcagacatt ttaaccgagc ttgattttaa tgatctttta
     3301 aaagcgcata aaaaatcaaa agctttaatg agcgtttgcg tgcgtgagtt tgagcaacaa
     3361 attccttatg gagtgatcac tcaaaaacaa ggttttatag aaaatataga agaaaaacct
     3421 acacaaaaat tcctagtaag tgcggggatt tatgtacttg aaaatgaaat tttaaattta
     3481 attgctaaaa atgaatacct agatatgcca gaactcatca aactcgctct acaaaaaggt
     3541 aaggtaaata cctatatcat caatgattat tggatcgaca ttggaaggcc agatgagttt
     3601 ttaaaagcca atgaggattt taaatgaaag tcttaatcat aggctttgga agcataggaa
     3661 aaaagcattt tttagcctta aaaaatttaa agtatgaagt aagtttgctt tctttaagtg
     3721 ctaaaaaaga agagtttgaa aaaactcaaa tctattgttc cttaaaagaa tgtcatttaa
     3781 atgaatttga tctttttatc atcgcaaata tcaccacaga gcattttaac accttaaaag
     3841 ctttaaatga gcttgtaaaa gataaaatca tactcgtaga aaaaccttta tttgaaaagg
     3901 tgcaaaattt tacaagctca aaaaatcaca tttatgtagc gtatttactg cgttttcatc
     3961 ctgtgattgt agctttaaaa aaacttttaa aaggtgaaaa aatttatttt gctagtttgg
     4021 tttgtaattc ttatttgccc cattggaggg ctttagacta caggcaaaat tacagcgcta
     4081 aaaaagagct aggtggtggg gttttactcg atctttctca tgaaatcgat ctagcctttt
     4141 ttctttttgg aaacttagag cttatatact cccaaaatgc taaaatttca gagcttgaca
     4201 taacaagcga tgattttgcc tttttggttt taaaaaattc acaaaaagct aaaattcata
     4261 tagaactaga ctatttttct aaatttaaca aaagagaaat tatcatccat actttagaaa
     4321 aaagctttaa agccgatttg ataaacaata aaatcgaaat ttatcacaaa aatcaaagtc
     4381 aaaaaatctt aaattttgaa aatgatacga taaaaaccct tcaaaattta catcatgcag
     4441 tctttgaaaa agacaaagaa ctttgcgatc ttaagcaggc tttaaaagtg cttgaaattt
     4501 gtgatgaagt aaggaaaaaa aatggctgaa attttatgta ctatttgtgc taggggtggt
     4561 agcaaaggcg ttaaaaacaa aaatattaga aagattaacg aacttgaaat gatagcttat
     4621 agcatcatac aagctcaaaa ttcaaagctt tttaaacaca tagtcataag tactgatagt
     4681 gatgaaatcg caagtgtagc ccaaaaatat ggcgctgaag tttttttcaa aagagaagct
     4741 catcttgcca atgatcgggc tgcaaaattt cctgtcatgc gtgatgcctt gctaagaagt
     4801 gaagagcatt ttaaaatgcg ttttgaaact ctcatagact tagatgcttc agccccgctt
     4861 cgctcaagcc ttgatataaa aaaagcttat gaaagttttg ttgaaaatga taattccaat
     4921 cttatcaccg cagttcccgc tagacgcaat ccttatttta acctcgtaga aatacaaaat
     4981 aacaaggtag taaaatccaa agaaggaaat tttaccactc gccaaagtgc cccaaaatgc
     5041 tatgatatga acgctagtat ttatatcttt aaaagggatt atcttttaga aaatgatagt
     5101 gtttttggca aaaacacagg gctttttgta atggatgaaa gcacagcttt tgatattgat
     5161 agcgagcttg attttaaaat cgtagagttt ttaatctctt taaaaaattt atcgtcaaag
     5221 gatttttaat gcttgaaaat aaaatcatct ttgtagcagg agcttgtggg cgtataggta
     5281 aagcgctttg tcaaaaaata cttcttagca aaggtatccc tatactcgca gatatcaaca
     5341 aagaacgctt aaataaattg caagaaaatt tagaaacaaa ttttaaaaca aaacttttaa
     5401 gcttagaact tgatatcact aaacaagaaa gcttacaaac cgcccttcaa aaaagtcaag
     5461 aaagatacgg caaaatcgat gcttttgtta actcaagcta tccttttggc aaagattggg
     5521 gtaaaacgcc ttattatgaa ctcaaatacg aacaaatttg tgaaagttta aatttgcatt
     5581 tagcaggctt tatgctagcc gctcaagaat ttgtgaaatt ttttaaacaa caaggctatg
     5641 gtaatatcat caatcttagc tccatcatgg gagtttatgc gccaaaattt gaaaactatg
     5701 aaggcacttc catgcaaagc tctttagaat acagtgtgat aaaagcaggg attaatcaca
     5761 tgagctcttg gctagctaaa gagcttttta atcaaaacat acgcgttaat accctagcaa
     5821 gtggaggaat tttagataat caaaatgaac tttttttaaa agcttataga aaatgttgtg
     5881 caagcaaggg tatgttagat gctgatgata tatgtggaac tttggtgttt ttgcttagtg
     5941 atgagagtag atttatcaca gggcaaacct tagtggtaga tgatggatgg ggcttatgat
     6001 gatcttcacc cctacccaaa aagaactctt taacaaaaac attgaggctt taagcaatat
     6061 tcttttaaaa gaaagtttaa aagaaattaa atcaagtaaa tttgaactta tcttaggtaa
     6121 agataatcta gatatcaatt taaaagatac aagtataaaa aataatgggg gggggtatag
     6181 tgaaaattta ctttatcaag atcccattaa agaattgcaa actatgctaa acacttataa
     6241 tgataaatat ctactttatc ctgtattgta tttttatggt tttggaagtg gaattttatt
     6301 taaagcttta ttgcaaaata aaaatcatca gcatattgtt gtttttgaaa aagatataga
     6361 aatcatttgg ataatgtttc atatcttaga tttttcaaat gaattgcaaa gtgcaagatt
     6421 gatgattttg caaacaagtt ctttggatat agaatttttt tctaattttt gctctagcaa
     6481 acctttcttt caattttcta gaatttattt tttagaactg atgagtcatt attatgaaag
     6541 atttcatgaa gatattttag gattgaataa aaaattagca gaaaatttta aaaattctat
     6601 tgtttctcat ggcaatgatc cccttgatgc tcttcaaggc atagagcaat ttgtttataa
     6661 tcttccttca atgattactc atcctagtta taaagaatta ctttctaaaa gaaagggtat
     6721 aagtgataca gctatcattg tttctacagg accatctctt actaaacaa
//
LOCUS       DARGED010000088         6710 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.088, whole genome shotgun sequence.
ACCESSION   DARGED010000088 DARGED010000000
VERSION     DARGED010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6710
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.088"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..408)
                     /locus_tag="SFZ84_001326"
     CDS             complement(<1..408)
                     /locus_tag="SFZ84_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203437.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQEL"
     gene            complement(409..717)
                     /gene="fliN"
                     /locus_tag="SFZ84_001327"
     CDS             complement(409..717)
                     /gene="fliN"
                     /locus_tag="SFZ84_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG8203438.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(717..1139)
                     /locus_tag="SFZ84_001328"
     CDS             complement(717..1139)
                     /locus_tag="SFZ84_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG8203439.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(1210..1959)
                     /locus_tag="SFZ84_001329"
     CDS             complement(1210..1959)
                     /locus_tag="SFZ84_001329"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG8203440.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLEICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(1952..3130)
                     /gene="trpB"
                     /locus_tag="SFZ84_001330"
     CDS             complement(1952..3130)
                     /gene="trpB"
                     /locus_tag="SFZ84_001330"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG8203441.1"
                     /translation="MKKAYYGDFGGQFLPESAIFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAIQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVTHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(3127..3726)
                     /locus_tag="SFZ84_001331"
     CDS             complement(3127..3726)
                     /locus_tag="SFZ84_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG8203442.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVKTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(3713..5314)
                     /gene="trpD"
                     /locus_tag="SFZ84_001332"
     CDS             complement(3713..5314)
                     /gene="trpD"
                     /locus_tag="SFZ84_001332"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG8203443.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSTFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(5311..6561)
                     /locus_tag="SFZ84_001333"
     CDS             complement(5311..6561)
                     /locus_tag="SFZ84_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG8203444.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
BASE COUNT         2311 a         1260 c          745 g         2394 t
ORIGIN      
        1 taattcttga gaattattca cagtagttgt aggtacagat tcgatatttg cttttccttg
       61 ctctatagct cgtatcctta ctccaaattt atcattgata gagctaagtt ctaaattaat
      121 attttgtttg ttttgtagca taatataggt attattattt ttagaactaa tactaatttt
      181 atctacaagt tgagagttaa gttcttttaa ttcatcttta gaatacgtta aatcactaaa
      241 agttaaaaga gttaaatttt tttctttttt ttgagaaatc ttgccattat aggcattatc
      301 aaaagaaagc attaaatcta ctcgatcatt tctatcgtag atattaaaac taatcagctc
      361 aacactatat aaaggtaaaa ttaaaaaaaa taatactagc aatctcattt aaatttcttt
      421 tttaaagtat tgaagcacag tcttagagtc caaaatttca ttaattctta tagcgagatt
      481 tttttcataa accataacct cgcctttgcc aaaaattctt ttattgatat aaagctcaac
      541 gctttctcca gcaggctttt caagatcaat aaccgaacct acttcaagtt ttaaaagctc
      601 cgctacactc atatttgtag ttccaagctc gcttacaaaa tctactgtaa tatctaagat
      661 atcttcataa gattgtaaaa gcccatgatg aatgttaaac tctatatcat cgctcattat
      721 ttgcaatatc ctattctaaa ataacaattt tcaaatttat aagttaaagc ttcatctaga
      781 actatttcag aaaaatcaac ttttcctaaa tattccggaa ttccgagttt atactcgtca
      841 tcacccttgg catcatttaa caaattttta gcataaccta taatctgatt ggcacattct
      901 ttagttaaat cgcaccagtc atcttcttta aatttttcat cattaattaa aatttctgca
      961 atttttttta aaaattcttt tggaaaaaat aaataaaaat tacattctcc ttcgcttttg
     1021 cccatgatag gaatactcgc tccataaagt tcaccgctta tatcttgagc tgcttcaatg
     1081 cgaagtctta agatatgctc gcaaaaatga gtgatggaat actcaagaat ctttaacata
     1141 actaccacct ttataaaaaa cttaatttaa aattatagta aatataaaat aaaaatatgt
     1201 tttaaaattt tattttttga aaatttcttc aatatctttc attattatat ccaaatttcc
     1261 ttgtttaaaa cactttacta tgctagttcc cacaatcact ccgtcagcaa cttttctcat
     1321 tctttttaca tcttgattat tttgaatgcc aaagcctaca aaaataggca aatttgtaaa
     1381 agatctgatt tcttttactt tatcttgcaa gattgcttct tcgacacttt tcgtacctgt
     1441 aatacctata cttgctaata aataaataaa acctttagca tgttttacta actttttaac
     1501 cctttcttta ggggttgtaa cgcttacaag tgtgattaaa gctatattat atctttcaca
     1561 ctctttaatt aaatcatcac tttcttcaaa acttaattca ggtacaatca aagcacaaat
     1621 ctctaaagat tttgcttttt tcacaaattt ttccaagcca taagaaaaaa ttaaattata
     1681 ataaaccata aaaaccaaag cttttttagt ttttatccta gctaaaagct caaaaacact
     1741 atgaatatcc acgccttgat caagagctat ttttgccgca tctgcaataa tctcaccatc
     1801 ggcaatagga tcactataag caacaccaag ttctaaaata tcaatagggc tttgatccaa
     1861 tctttgcaaa aaagcttcac ttgtttgaag atttggataa cctaaaaccg tataagccac
     1921 atttgcattt tctttataaa attttctaaa atcaaccata aatcacccct tttttataat
     1981 ctctaatcat ttgcatatct ttatctcccc tgcctgaaag atttactact atcacgcttt
     2041 tcttttttaa agttggacaa agtttttcta aaaacgctaa agcatgcgaa ctttcaatcg
     2101 ctgcaataat accttcttct ttgcaaagta attttaaagc ttgcatacat tcttcatcac
     2161 ttatagcatg atattgcgct cttttacttt caaataaaaa agcatgcaaa gggccaattc
     2221 ctggataatc aagccctgca gaaacactat gtacaggcaa gatattgcct aaatcatctt
     2281 gtaaaacctt ggttttcata ccgtgaataa tgcctgtttt tcccttattt aaagtcgctg
     2341 catgataagg cgtatcaatg ccaagccccc ctgcttcaat acctataagt ttaacatttt
     2401 catctttgat aaaatcataa aaaatcccag ctgcattgct tccaccccca acagctgcga
     2461 taatataatc tactttttta ttgagttttt gaagttgcat tttgcattct tttcctataa
     2521 tgctttgaaa atgggttacc attttaggat aaggataagg acctaccgca cttccaacca
     2581 cataaaaaat atttttaata tctccaaccc aagcttgaat agccgcagta gtagcttctt
     2641 ttagagtttt aagcccactt tgtattgcat gaattttagc acccaaaagc tccattttat
     2701 aaacatttaa agcctgtctt tgcacatcgg ttgcccccat ataaatttca cattcaagtc
     2761 ctaaaagtgc tgctgcagtg gctgttgcaa gcccgtgttg acctgctcct gtttctgcta
     2821 tgattttttt ctttcccatt ttttttgcta aaagggcttg agcgatagca ttattgattt
     2881 tatgtgctcc ggtatgattt aaatcctcgc gttttaaata aatttcatgc tgatattttt
     2941 tgcttaaatt tctagcaaaa taaagtggag taggacgccc tacataagtt tttaaaagct
     3001 cgtttaattc ttttttaaag agtttatctt tagaaaattt caaaaaagca ccttctagct
     3061 catttaaagc aaatattgca ctttcaggca aaaactgccc accaaaatcc ccataatacg
     3121 cttttttcat tttttcaact cctttaaaat ttgttttatt ttgttgatat cttttaagcc
     3181 tttttcatct tcaagttttg aattaagatc taaaatttta gctcccgttt ttacagcctt
     3241 atgaacatta tccaaaccta tgcctccggc taatataaaa tctttagtat aagaacctaa
     3301 taaagtccaa tcaaaactta ttccattacc gccctttaaa attcccttag catcaaaaag
     3361 tactaaatta gcaaaaattt cactttttaa atctaaacta ttttccacac taatcacctg
     3421 ccaaacaaaa acattttgca cctttaaaat ttcaaattct tctttggtaa tagtgcgata
     3481 aatttgtatc ccatcaagct tagcttcttt aatacatctt aaaatttgtt ccaaattttc
     3541 atctacaaaa acaccgacaa cttttttatc tttttcatga aaaattgcac ttaaatttct
     3601 tgcttgttct aaactcactc ttcttggact tttagcaaaa ataagtccaa aaaaatcaat
     3661 atttaaaaaa gctaaatctt tggcattttt ttcatcttta ataccacaaa ttttaagctt
     3721 tagcataagc ttgatactcc ttaaaatatt ctataacctt acctgaataa atggcttcta
     3781 aaatcatatc tttagccact aaaggcgaac ttgctttatt ggctgtataa agtgcaaaca
     3841 tagcatttaa aactaccaaa tcaaattttg ccccttgcat tctaccgctt aaaatatctt
     3901 ttaaatcttt agcgttgtca tatgcactag atcctatgat ttcactatga aaagctcttt
     3961 taaaaccaaa ttgttcagga cagatagaat actctaaaat ttctccttca caaagctcat
     4021 aaattttact ttcatcgcaa atactaagct catccatacc atcatttcct cttaccacta
     4081 aagctttttt gcgtcctaaa ttttttaaaa cctctatcaa aagcctatgc acaggtgcgt
     4141 gataatttcc cataagttga tattttaact ttaaattagg gtgcaataaa ggacctaaaa
     4201 cattaaaaac cgttcttact ccaagtcttg atctgatctc tttaagttct cctactaaag
     4261 gatgaaaaaa tggagcatgt aaaaaactaa gcccttgatt atttagttgt tttaaaactg
     4321 attctaaagt gtttggagta gttatattta aagcttctaa cacatctgta cttccgctag
     4381 aacttgaaat ggcacgattt ccgtgtttgg ctacttttac tcctaaagct gctaaaataa
     4441 aagtactagt cgtagaaaca ttgatacttt taaaaccatc tccacctgtt ccacaaatat
     4501 caatcatctc actctcatca ctaaaagttt gagaatatct taaaatttgt cttacaaaag
     4561 cacttaaaga tttttcgttt aaagactttt cagtgattaa aatcaacaaa gccgctactt
     4621 gtaaaatttc ataatcttta gacataataa tcttacaaat ttgctcaaaa tcatcgcttt
     4681 gtaaaaaatg attttcactc attttttgca aataaaaact taaaggattt tcttgttttt
     4741 gtggtttttt tatatcttgt tttaaaaaat tagaaaaaag ttgtaagcca tattcactaa
     4801 aatagctttc aggatgaaat tgcacaccat aataaggtaa atttttatgt cccaaagcca
     4861 taatcacacc cttttcatca agggctaaaa tttcaagctc atcactaagc tgtttaacct
     4921 ctaaagaatg ataacgcatt acactaaaat ttgaaggcaa attagaaaat aattcatttt
     4981 ccctgcactg ttttatcaaa gaattttttg catgcatagg ctcttgcatc ttaaccacta
     5041 aagaatcaaa agctaaagct aaagcttgat gtcctaagca aatgcccaaa acagggatat
     5101 taagccttgc tttaaaaatt tcaagacaaa tcccactttg acttggatgc tttggaccag
     5161 gacttaaaat aatatgagta ggatttaaat ttttaatttc actcagagaa attgcatcat
     5221 ttcttcttac taaaatttca tcattgctga gttgctctaa catgctttta acattaaaaa
     5281 caaaagaatc ataattatca attaaaagta tcattgattt tcctttttta aattttcaaa
     5341 agctaccaaa agcgccttgc gtttagcaca aatttctgca tattcttttt gactctcact
     5401 ttgcaaaaca atacccgccc cacttgccaa ataagcctta tcttgagtaa aaaaagcgca
     5461 acggattaaa atcgctaaag ttatgtcttc gttaaaattt aaaaatccta ccgcaccacc
     5521 ataaattcca cgatcgcaat cttcaagctc gctagtgatc tctaaagctc ttattttagg
     5581 agctccgctt aaagttcccg ctggaaaaac tgcttcaatc acatcaaaaa tactcgcatc
     5641 ttctttcata ttggcataca cttcactcac tatgtgcatt acaaatttat ttttaataat
     5701 agaaaaaaga ttttccactc ttgtttgagt gccaaattta gaagcatcat ttcttgctaa
     5761 atctacaagc atcttatgtt cactaagttc tttttcatca cttaaaagat ctttttctaa
     5821 agctaaaaga tcacagttat tttccaaatt tctagttcca gcaatagggg ctaaataaat
     5881 ctctcttttt ttaattttca ataaaaactc tggagaagaa cccaaaacaa caccatattt
     5941 acttggaaaa taaaacatat aagcgcttgg atttaaagca cttaaactct cataataatc
     6001 aaaagcattt acttgatgtt tgatacaaag ttgcttactt aagaccactt gaaaaatatc
     6061 tccacttaaa agatattctt tggctttttc gcacattttt aaaaaatcat ttttttcatc
     6121 ttctaaagaa tttaaaattt caaaatcatt tttttgtttc tttttcattg gttcaatatc
     6181 atcttttaaa tattcaaaat attttgaagc accaaattta aaaaacatct tgctattttt
     6241 ctcataaatc aaataagctt tagcattggc aaataaaaat aaaggaaaat cataattttt
     6301 cttagaagaa agtggaattt tttcaaacaa agatacaaaa tttgcactaa aaactccaaa
     6361 aaatccagca aagtcgcaaa ttttattctt gcttaaagct tcataatatt ttgccttaaa
     6421 ctcgctaaag gataattcat tagcatctaa ataatcacaa tcaatcccta taattacctt
     6481 agtcaaatcc tctgcaaaat aagaattttc aaatttttca aggatttgtc tgtaataaaa
     6541 atttacattt ttaacaaaca taataaacct ttttttaaaa aaaataaatt aaaataatat
     6601 taaagaaaaa atttagataa aaagaagttt agaaacgcca agagcgaaga gtgtgtgtaa
     6661 gttttaaaat caaagaatta ctaaaaaaat cattttcact catcttttac
//
LOCUS       DARGED010000089         6679 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.089, whole genome shotgun sequence.
ACCESSION   DARGED010000089 DARGED010000000
VERSION     DARGED010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.089"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            33..461
                     /locus_tag="SFZ84_001334"
     CDS             33..461
                     /locus_tag="SFZ84_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203445.1"
                     /translation="MKIDTLTKNFSNYQTQINKDNDLVSNVHSDNVVKIQISDEARSL
                     SQTNSKNEKEYEIKVSQEKIENHKDQNSIQNSKGGVNPALEALIAKLAEILAKIAELT
                     QKMTNANEQMKTTFQKQIDVLKSQADVIQAQIQELQSQQA"
     gene            527..1783
                     /gene="murA"
                     /locus_tag="SFZ84_001335"
     CDS             527..1783
                     /gene="murA"
                     /locus_tag="SFZ84_001335"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG8203446.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKGAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFEALI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            1780..2940
                     /locus_tag="SFZ84_001336"
     CDS             1780..2940
                     /locus_tag="SFZ84_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8203447.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKSEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMFQNASYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLNNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENISELKKGDEITLLKI"
     gene            complement(2962..3810)
                     /gene="lepB"
                     /locus_tag="SFZ84_001337"
     CDS             complement(2962..3810)
                     /gene="lepB"
                     /locus_tag="SFZ84_001337"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG8203448.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGSQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDDFMREHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYKLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3820..4668)
                     /gene="folD"
                     /locus_tag="SFZ84_001338"
     CDS             complement(3820..4668)
                     /gene="folD"
                     /locus_tag="SFZ84_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG8203449.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDDPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            4748..5095
                     /locus_tag="SFZ84_001339"
     CDS             4748..5095
                     /locus_tag="SFZ84_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203450.1"
                     /translation="MKIVLMSFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     NGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            5092..6366
                     /gene="hemL"
                     /locus_tag="SFZ84_001340"
     CDS             5092..6366
                     /gene="hemL"
                     /locus_tag="SFZ84_001340"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG8203451.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADKKGLPLQVCHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            6363..>6679
                     /locus_tag="SFZ84_001341"
     CDS             6363..>6679
                     /locus_tag="SFZ84_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG8203452.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQK"
BASE COUNT         2451 a         1068 c         1068 g         2092 t
ORIGIN      
        1 taacaatata aattaattta aaaagattta agatgaaaat agatactttg acaaaaaatt
       61 ttagcaatta tcaaacacaa ataaacaaag acaatgattt ggtaagtaat gttcatagcg
      121 acaatgtggt taaaattcaa atttcagatg aagcaagaag tttaagtcaa acaaattcaa
      181 aaaatgaaaa agaatatgaa atcaaagtaa gtcaagaaaa aatagaaaac cacaaagacc
      241 aaaattccat tcaaaatagc aaaggtggcg taaatcccgc attagaggct ttaatagcaa
      301 aattagctga aattttagct aaaattgcag aacttactca aaaaatgaca aacgctaacg
      361 aacaaatgaa aacgacattt caaaaacaaa ttgatgtgct aaaatctcaa gcagatgtaa
      421 ttcaagctca aattcaagaa ctccaaagcc aacaagcttg attatatttt ttcaaaagtt
      481 taagaatgct ataatgatgc atttttaaac tttttcaagg aaaaatatga cttatctaga
      541 aatcgaaggc acaaatcatc taagcggaaa tgttacaata agcggagcaa aaaatgctgc
      601 cctacccttg atcgtttcaa gcatacttgc taaaaatgaa gtaaaaatca acaatgttcc
      661 taatgttgct gatataaaaa ctcttatatc tttgctagaa aatttaggag ctaaggtcaa
      721 ttttcaaaac aatagtgctt tattaaacac aaacactctt aatcaaacca tagctaaata
      781 tgacattgtg cgtaaaatgc gtgcttccat acttactcta ggacctttac ttgctcgttt
      841 tgggcattgt gaagtatctt tgcctggtgg atgtgccata ggacaaagac ctattgattt
      901 acatctttta gccttggaaa aaatgggggc aaatatacaa attaaacaag gctatgtcgt
      961 agctagtgga aatttaaaag gcaatgaaat tctttttgat aaaatcacgg ttacaggtag
     1021 tgaaaacatc atcatggcag cagctttagc caaaggtaaa accaagctct taaatgttgc
     1081 aaaagaaccc gaagtagttc aactttgcga agttttaaaa ggcgcaggac ttgaaatcaa
     1141 aggcataggt acagatgaac ttgaaattta tggtagtgat ggagaacttt tagaatttaa
     1201 agaatttagc gttatacctg atagaattga ggcaggaact tatctttgtg caggggctat
     1261 tacaaattct aaaattactt tagataaagt taacgccact catcttagtg cagttttagc
     1321 aaaacttcat caaatgggtt ttgaagcttt gattgcagaa gatagtatca ccctacttcc
     1381 tgctaaagaa attaaacctg tagaaatcat gacaagtgaa tatccaggct ttccaaccga
     1441 tatgcaagcg cagtttatgg cactagcttt aaaagctaat ggaactagta ttattgatga
     1501 aagactattt gaaaatcgtt tcatgcatgt aagtgaactt ttaagaatgg gtgcggatat
     1561 taaactcaat ggtcatattg ctaccatagt aggcggaaaa gaacttaacg ctgccgatgt
     1621 catggctaca gatttgcgcg cttcttcagc ccttatctta gcagctcttg cagctaaagg
     1681 tacaagcaaa gtccatagaa tttaccatct tgataggggt tatgaaaatt tagaagaaaa
     1741 atttaaagat ttgggtgtga aaatcacaag gcttgaagaa tgaaaaatat ctttgaaacc
     1801 ttaaaagact tagaaaatca aatttcatgt ttagatgaaa gtgagcttat tagccttgaa
     1861 aaagcaaagg atagaatttt agctaaagat ttatacgcta gaaaaaatct acctagtttt
     1921 gacaatgctg ctcttgatgg ctatgctttt aattatactg atatcaatga agctttggag
     1981 attaaaggga ctatttttgc aggagataaa aatttttata cagttgctaa aaatgaatgc
     2041 tataaaatca tgacaggggc taaaatgccc aaaaatgctg atactatctt aatgctagaa
     2101 gatgagtata tagaagaaaa taaactcatc attaaaaaag ctcctaaaca atacaatgcc
     2161 tatcgctata aaggtgaaga attaaaaaaa agtgaaattt tacttcaaaa aggtaccaaa
     2221 cttaatgata aacatatcgc cctgcttgct tctcaagggc tttataaaat agaagtcata
     2281 agaaaaattc gcataggtat tttttcaagt ggaaatgaac ttaaagaacc ctggcaagaa
     2341 tgcgatgaag aaagtattta taatgccaat gctttacctt tgctaaccat gtttcaaaat
     2401 gcttcttatt taggtattat caaagataat tttaaaagca ctaaagaggc tttagaaaat
     2461 acaaattttg atcttttaat cacttcagga ggtgcaagcg ttggcgaggc tgattttatg
     2521 gaaaaagctt tagatgaatt aggctttact ccacttttta aaggtttaaa agcacgccct
     2581 gcaagaccta ctaagcttta tagaaaaggt gaaaatttcg tattgatttt accaggaaat
     2641 cctatggcag cttatctttc ttgttttatt tttgctaaaa aaatcattaa tttattaagt
     2701 ggaaacctaa acaatccttt aacattttat ggcaaaatgg gtatggattt aaagcttaaa
     2761 agcggaagaa ataatctcat cttaggaaat ttagaaaaag atatttttac accatttaat
     2821 gaaaataaat ttggctctgg tatgatactt ccacttatta aaagtgaatt tttacttata
     2881 agtgaagaaa atataagcga attaaaaaaa ggtgatgaaa tcacgctttt aaaaatataa
     2941 tgtttgtgtt tttcgcaaac attagcttaa tttatcctca tcatcatgat catggatata
     3001 ttgttcatca ttttccaagg tatcaacaaa acgccctatc ctttcccagc gaacattttt
     3061 atctttatcc caagagaaat atacaaacca aggtttgcct actatcaact tataaggaac
     3121 agaaccccaa aaacgactat cataagaata atcacgatta tcacccatca tgaaatactc
     3181 attttcaggc acatcaaaaa cataagcatt tccgccacta aaacctatat gatttccaag
     3241 ttctttaata taagttggag acatagcaaa atcacctatg ctaagaaagc gtaaaatatc
     3301 actttctata tctttttttg gatcataatg aatacctttt tgtttataag gttcttttac
     3361 ataaatttgc cctccaagag taacaagatc attcggataa tgttctctca taaaatcatc
     3421 accctcatgc attcttacat aaagtgtttt atttgcataa actatcctat ctcctcctgt
     3481 gcctacacaa cgctttacaa agtgttcttt ttcatttcta ggatttctaa aaacaactat
     3541 atctcctctt tgtgaccctt gtgcttttat caaatgccca tctttattaa aatccggcaa
     3601 aacaggaatt tccaaccaag gaatatgagg agttgggata ccatagctaa attttttaac
     3661 aaataaaaaa tcccctacca ataaggtgtt tttcatagaa ccagaaggaa taacaaaagc
     3721 ttgtataaag aaaaaaatca ccaaaagaac aataactaca gttccagtcc aagactgtga
     3781 aaatttatat aatttcttta aaatttccat agattttccc taattaagtc tatttttagc
     3841 agatttaact gtgttttcta aaagcatggc tatagtcata ggacctactc cacctggaac
     3901 aggagttata taactagatt ttttagatac ctcttcaaaa tctacatctc ctactatctt
     3961 tccactttca agacgattga ttccaacatc aacaacaatc actccttctt ttaccatatc
     4021 cgatcgaagt aaattcacac aacctgctgc tactataatc aaatcagctt gcctagtata
     4081 aaggctcaaa tctttggttt taatatgaca aacgcttact gtagctccag cgtttaaaag
     4141 catagtagcc ataggacgac ctactatatt tgaagcacct ataataacag cgtcttttcc
     4201 ttctaaatca atttcataag ccttcaaaag cttcataact ccaagtggag tacaaggcaa
     4261 aaacccgctt tctaagccta aatttaaata tcctacatta ataggatgaa aaccatcaac
     4321 atctttacta cttataatac tttcaagtat taaatcttta caaatatgat caggtaaggg
     4381 aagctgaacc aaaattccat gaacactatc atcgtgattt aaggtattaa tcaatgccaa
     4441 aagttcattt tgtgtagtat tttcattaag atgataaact aaagatttaa ttccacattc
     4501 ttcacaggct ttagccttag attttacata agtttgactt gcaggatcat ctccaaccaa
     4561 gataacagct aaacagcttt caatcccttt gcttttcaaa aattgatttt tttcttttaa
     4621 ttcttctttg atttttgcgc ttaaagcttt accatcaagc aaagtcatta ttttccttct
     4681 ataaatttaa tcactttttt aaagtaaaaa ttgtatcata ttaaaacttc attaacaagg
     4741 tgaaactttg aaaattgtct taatgtcttt tttatttagt atcagtcttt ttggtgctga
     4801 ttttatcact cttaaagaat actctaaaat gctttatgaa aatccaaggg gcattagttg
     4861 taaagaatgt catggagcaa atggaagcga acaaatttta ggatattata tgaaaaatgg
     4921 tattaaaaca gcttataaag ttccaagtat acaaaatctt agttttgaga attttaaaaa
     4981 ttctcttaat cagagtaaag acgcaaaatc aatcatgcca aattactctt taacaaatga
     5041 tgaaattgta actttatata attacatcaa gcaatttagc aaggaagaaa aatgacaaac
     5101 aaaaaagctt ttaaagaagc gtgtaaattc atcgcaggtg gtgtaaattc tccagttcgt
     5161 gcttttgcaa atgttcaaag tgagccaaaa tttatttctc atggaaaagg tgcttatatt
     5221 ttcgatatag atggaaattc ttatatagac tatgttcaaa gctgggggcc tttacttttt
     5281 ggacattgcg ataaagatat acaaaaagct tgtcaaaaag cacttcataa aggttcaagt
     5341 tttggagctc caactttatt agaaactgaa ctcgccaagc ttgttttatc tgattttcct
     5401 catttagaaa agatccgctt tgtaagcagt ggaacagaag caaccatgag tgctattcgt
     5461 cttgcccgtg gttttactaa aaaagataaa attttaaaat ttgaaggatg ttatcacggg
     5521 cattctgatt cattattagt gagtgcagga agtggtgctg ctacttttaa ctctcctagt
     5581 tctttgggtg ttttagaaga tgtagctaaa cacactttag tagctaaata taatgatata
     5641 aatagcgtta aagagctttt tgaaaaaaat aaagatattg catgtgttat cattgagcct
     5701 attgctggaa atatggggtt agttccagct aaacaagatt ttttagaaga acttgctaag
     5761 atctgtaaaa acaatcaaac tctgctgatt tttgatgaag taatgagtgg atatagagca
     5821 tcttaccttg gttcctatgg aatcaatcat atccaagcag atataattac ttttggtaag
     5881 gtaataggag gcggtctacc tgcagcagca tttgcttcta gggctgaaat tatggatatt
     5941 ttaagtcctt tgggtggagt ttatcaagca ggaactttaa gtggaaatcc tttggcaatg
     6001 gctgcaggta tagcaagtct tacaaaagcc aaaaagaaaa ccaagcttta tgacaaactt
     6061 ggaaaattag caaaaaaact tacccaagga atgaaaaaat tagcagataa aaaaggactt
     6121 ccactgcaag tttgtcatgt aggttctatg tttggatact ttttcaccaa agatcctgta
     6181 tcaaactacc aagatgcatt aaaatctgat ctagcattat tttcaaaatt tcacaaaaat
     6241 atgcttgaaa atggaattta tttagcacct tctcaatttg aaacaggctt tatatgttca
     6301 aaaatggatg ataaaattat agatacaaca ttagaggctg ttagggaaag ctttaaaaga
     6361 atatgagcaa tattttaaaa gaagaaaaaa atcacttaga aaattccaac agcaaaagac
     6421 aaaaaatcat tcgcaaaact cttgaagctg cggatggttt aagtcttggc atctctatgg
     6481 ttgttgctgt atttataggt gtgggaatag gatatttgct taaaaaattt actccttatc
     6541 cttggctttt ttggcttgga gttttttggg ggatcagtgc tgctatactt aatgtttaca
     6601 aagcttataa agttcaagta aaaagctatg aagaatttaa agaaagagat gagttgatca
     6661 aagaaaaaat tcaaaaaga
//
LOCUS       DARGED010000090         6648 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.090, whole genome shotgun sequence.
ACCESSION   DARGED010000090 DARGED010000000
VERSION     DARGED010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6648
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.090"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..736)
                     /locus_tag="SFZ84_001342"
     CDS             complement(<1..736)
                     /locus_tag="SFZ84_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203453.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSRWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVSIKNKNYECSKI"
     gene            complement(729..1955)
                     /locus_tag="SFZ84_001343"
     CDS             complement(729..1955)
                     /locus_tag="SFZ84_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203454.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFTKELALALKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKYDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2082..2666
                     /locus_tag="SFZ84_001344"
     CDS             2082..2666
                     /locus_tag="SFZ84_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG8203455.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIAEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2710..3093)
                     /locus_tag="SFZ84_001345"
     CDS             complement(2710..3093)
                     /locus_tag="SFZ84_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203456.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGNSDFMDILNK
                     ADEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3170..3505)
                     /locus_tag="SFZ84_001346"
     CDS             complement(3170..3505)
                     /locus_tag="SFZ84_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203457.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3495..5072)
                     /locus_tag="SFZ84_001347"
     CDS             complement(3495..5072)
                     /locus_tag="SFZ84_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8203458.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYETLKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAIFWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAINPDSGSIHLGATIELGYFPQDASNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(5195..5539)
                     /locus_tag="SFZ84_001348"
     CDS             complement(5195..5539)
                     /locus_tag="SFZ84_001348"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203459.1"
                     /translation="MDIRDLEAALSTDTLGVLRAHFKPLLDLKDYANEVVYTSFESFI
                     TKDSKDKKTSFCMGQLKFTYPQMPNEMREKYSRGTLKGVLFDGGECETQISYSARFSD
                     DKKQVFVELLDY"
     gene            complement(5728..5988)
                     /locus_tag="SFZ84_001349"
     CDS             complement(5728..5988)
                     /locus_tag="SFZ84_001349"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203460.1"
                     /translation="MSEKYTPFEVEPTLLYEKDTYQIVAGKAYTNKDEQFCIGLKSNG
                     FPINSYLIFPPQLSSDLLKSLLGQDGAKNDEIIEFIKIIMEK"
     gene            complement(6031..6450)
                     /locus_tag="SFZ84_001350"
     CDS             complement(6031..6450)
                     /locus_tag="SFZ84_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203461.1"
                     /translation="MDFNSVLSNIGDKLPRDGLAAITLKEKFERLSEERKKDVLNQLP
                     MLKLKSPALVFWVGTFLFGPFGVGRFMIGDMVLGFVRLAFVIIPIIFNIVASKSLQNI
                     AYILVIVNWTIWWIVDMFLVGKKLRKQNYEKIANIIQ"
BASE COUNT         2420 a         1162 c          774 g         2292 t
ORIGIN      
        1 atattttaga gcactcgtaa tttttatttt ttatactaac aaattgactt ttaagtgttt
       61 taaaatctgg aatataagca taaccgctaa gcgtatctat aacgatacaa agagcatgct
      121 tttttgataa caaacgtata atgcaatctg aattattctt tgctaaagtt ttttcatatg
      181 cataattggc attttttaac ggagaataca ctctgcccat ttcatcaaat actaatctag
      241 taaatcctga acaagatcct ttgaattcaa ccttttctat tccgaatctt tttgtaagat
      301 taaatctttg tgtagttttt tcatcatctt tactaataac tccactttga cctgaattca
      361 ttaatttgtt atgattgatt acatcaacag caatttctct atctatattg atttcagttt
      421 tacctaaatt agcatttcca tcgccatttt tatccaagaa aatagtatat gtttgatcat
      481 aacctgtggc agctgatttt ataaaataaa tctgccacct acttttaaac cactctcttt
      541 ttgcgatagc caactcatca actcttatac cttcttgcat catggctaaa ctttgggtat
      601 attggatatc attaagaatt tgtattgcgc cttctagtaa attgtctttt tttaagtaaa
      661 gactgcctaa attaaaaact atacctaaaa taagaattat aaacacaaat tctaacaaac
      721 tgaaagcttt aatcatagtt taaaatctga tatacttttt catattttcc aagttttact
      781 ttaacaattt ttttgtccat atcatactta tcggcttgtt ttaaagcttt taaataaaac
      841 ttattgctat tttttattcc ataaaatcgc aatctttttt gcaaacttgg ggctgttgca
      901 agctctaaaa catcttgttt ttttaatgct agcgccaatt ctttagtaaa atgataatta
      961 ttggcaaaat gacgatttgg attgtttata aaataataca ataattgatt agcgacgatt
     1021 aaaaagtaac aaaatatcaa aaaaattata gaacattcta taaagatttt ataccttaat
     1081 cgaaaaactg gtaatctcac cctataactt tgcattaaag tttttataag caaaggagtg
     1141 caaataacac aaaaaggcaa aaaatcatct aaaaaaagtt tttgtcttaa agaaagcaac
     1201 aaacaaaata caaatgttac gctcattaaa aaccataata aatttttata tttctgaaaa
     1261 gtcaaacgat aaatagtata aaaaaaatac acaaaaacca aaggagaaaa acatgcagca
     1321 aaaattccta aagtatctaa aaaataacct cttggacgac cacctgtatc aaaaccataa
     1381 aaactgatac tcgctccaaa caaaacaaga gataaggtaa ataaaatagc atttctttta
     1441 taaatcccaa aaaagaaaaa agttaaaaat aaaatattaa aagatttatc aacaaataat
     1501 actataatca ataatatata aaaaagccat tttttttcat attcgtaagc acataatata
     1561 gcaagggtta aaaaaatcac caaagatgcg gcattaacca gtaaagcact tgcaacagta
     1621 cccggcaata aaacaaataa caataaagaa aaaaaagcat caattttagt tttagtatat
     1681 tttaaagcta gcaaatacaa aagcaaacaa cttaaaaaat gaaaaaataa aaaaggaagc
     1741 cttaaaccaa aatcattttg cccaaaaata aaagttccaa aatgagatat ataataaagc
     1801 aaactatggg aaaaaataag tgatttaccc tgctcaccaa aataaatatc agcttcatca
     1861 gcactaatac tcagtgttga aattccataa agcaaagcca acaaatcaag actaagtaaa
     1921 atgatgataa gtttataatt tttgattttt tccataatga aaattttaca aaattaaact
     1981 taaaatatca atgcaaatca tacaaatatc aaatatctta aaaattaaca tcaaattgat
     2041 tttagttttt ataagtataa ttttaaacaa aaaaggcaaa aatgcaaact attgatcaaa
     2101 tttttcaaac acaaatcgat attaaaaaat ctactttctt atcttttctt tgccctttta
     2161 aagattttaa atttttaata gaaacactaa aaaaagaaca tccaaaagcc gttcattttg
     2221 tctatgctta tcgtgtttta aatgatttta atcaaattgc agaagataaa agtgatgatg
     2281 gagagcctaa aggaacttct ggaatgccaa ctttaaatgt tctaaggggc tatgatctta
     2341 tcaatgcggc tttaatcact gtaagatatt ttggcggtat aaaacttggt acagggggac
     2401 ttgtaagagc ctatagtgat gcggcaaatg ccgtgatcaa taattcttct ttactttcat
     2461 ttgaattgaa aaaaaatata accattgcta ttgatttaaa aaatttaaat cgttttgaac
     2521 attttttaaa aacttattct tttaatttca caaaagattt taaggattgc aaagctatat
     2581 tacatatcaa attaaatgaa aaagaggagc aagaatttga aattttttgt aaaaattttg
     2641 caccttttga aatagagaaa ttataaattc ttgcaagtaa atacaaaagc tccaaaatgg
     2701 agcttttgat taaattgcgt tcaataaatc atttaacaaa gtattattct tactttgttc
     2761 atttgcacct tgttgcgcaa gatcattgtg aacgctagca ctttgagctc tcatagacaa
     2821 ctcgccttca ttttgtctaa aacgataagc gtaaacattt gacatttgag cataattact
     2881 taaatttgaa tttgagtttt gcgcattgct ttgaaaacta ttgctagaat ttaaagcatc
     2941 tccgcttgac ttctcatccg ccttatttaa tatatccata aaatcagaat ttccagatga
     3001 agaataatct tcaacctgtt tatccacctg tttatactga ccactaatag catcgtattc
     3061 atacgagctg atcgttctat aatttacctg catagttttc tcctttcaaa atatgcaaaa
     3121 actatacaag caaaaagtat tccttttttt atgtaaaaat taatgttttt caatcatgat
     3181 gagtaggcaa atgctccaca tcaagctcat tattggctat aaattcttcc ttggcttttt
     3241 tacagttttc atcacgcatt ttgcggtatt cattgcgaat cgtgatttct ttatcgctta
     3301 gaggtctatc ttctaaaaaa ctgatatgaa aataagtatc atcgctcttt gaataagttt
     3361 tataaaaatc tatataatca aaataatcct tgccattatc aaactctacg acttcttcta
     3421 tataaatcgt aggcccaaaa cccttgtgat tttgcgtata gtgcccaaaa cctgcgctgt
     3481 attgaattct aaatttagcc atcattttct cctaaaaatt cttgataagt tccacgaaaa
     3541 tctgtaagct taccattttc taaatgccaa attctattag caaaagcaga aactaactcc
     3601 ctatcgtggc tgatacaaag cactacacct ttgaaattat acaaagcttc acctaatgca
     3661 ataatacttt caagatctaa atggttatca ggttcgtcta aaagcaagaa attcggacgc
     3721 tctagcatta aacgagaaag cattaaacga tgtttttcac ccccacttaa acttgctgcc
     3781 attttttctt gatcgctgcc actaaaaagc attctaccta aacacttgcg gatttcatct
     3841 agatctttaa atttttcact catcagccat tcataaagtt tcaaattttc acaaattaaa
     3901 ttacttgcat cttgaggaaa atatccaagc tctatagttg ccccaagatg tatagatcca
     3961 ctatctggat ttatagcatt ggcgatgatt tttgccaaag tacttttgcc cacaccattt
     4021 gccccgatca aagcgatttt atcatttttt tctattttta gctccaaatt tgaaaacaat
     4081 tgtttatcat aagccttgcc tataccttta aattctaaaa cttcattacc tatttcacga
     4141 ttggttctaa aaactatgct aggatctcta cggcttgaaa ttttaatctc ttcaagctct
     4201 agtttttcaa gtgccttagc acggcttgtg gcttgttttg ccttagaagc atttgcgcta
     4261 aaacggcgaa tgaaattttc taattcttct ctttctttta aggttttatc acgtttaagc
     4321 tcagcttgtt ttgccaaaag cgttgaagcc atataccaat catcgtaatt tcccgcaaaa
     4381 tcacgaattt gtttaaaatc cacatctaaa atccttgtgc aaattttatt taaaaaatgt
     4441 ctatcatgag agataacaac caaagttcct tcatgtctta aaagctcatt ttcaagccaa
     4501 aaaatcgcct ctaaatcaag gttatttgta ggctcatcta aaaaaagcac atccgcaccc
     4561 aaaaacaaaa cttgagctag taagacttta aatttatccg cactttgcaa ggtgctcatc
     4621 aaagcatcaa aatctttaat ctttaaagaa cttaaaattt tttcacaacg cgtttcacaa
     4681 tcataatttg gatcttcttc agccgttatt atctcaagct cacctaaacg ctcattgatc
     4741 tcatctgtaa attcctcgct catataaagc ttttcttttt cttttaaggt ctcatataaa
     4801 cgcttatttg cacacatcac tgcatctttg atggtgtagt tttcaaaagc aaattgatcc
     4861 tgtcctaaaa ctgcgatttt taaaccttca tcaaatacta tttcaccact actcgactca
     4921 atttctcctg aaagaatttt caaaaaagtc gattttcccg caccattagc accgataagt
     4981 ccgtatcttt gtcctcgaac aagttttaaa ttaacatttt caaataaaag ctgatttgca
     5041 aaacgcatag taagattttt tacttcaacc atgattttcc ttaaattttt tacttataaa
     5101 aatttttaag aaattgtatc aaaaaaagac ttgaaattaa ttaagtataa attttatata
     5161 gacaatgaaa ataaaatttc attgtcaaaa taaattaata atctaaaagt tctacaaaaa
     5221 cttgcttttt atcatcacta aatctagcac tataagaaat ttgagtttcg cattcccctc
     5281 catcaaataa aactcctttt aaagtacctc ttgaatattt ttctcgcatt tcattaggca
     5341 tttgtggata agtaaatttt aactgaccca tacaaaaact agttttttta tccttgctat
     5401 ctttggttat aaaactttca aaagaagtat aaaccacttc attggcataa tctttcaaat
     5461 caagcaaagg tttaaaatgc gcccttaaaa ccccaagcgt atctgtagat aatgcagcct
     5521 ctaaatccct tatatccata ccattagaat ttatccttaa cgcccttaag gattgttcat
     5581 ttaaaccgta ttcaacataa acctattcat cattatccaa aatacttttt agtgtaagct
     5641 taacatcttc atcatcgcat tttggcttat tgttaaaaca tcctgtaaat aaaaaaacaa
     5701 acatcaaact taataaaata tttttcatta tttctccatt attattttaa taaattctat
     5761 gatttcatca tttttagcac catcttgccc caaaagactt tttagtaaat ccgagctaag
     5821 ctgtggagga aatataagat aagaatttat tggaaaacca tttgatttta agcctatgca
     5881 aaattgttca tctttatttg tgtatgcttt tcctgcaaca atttgatagg tatctttctc
     5941 ataaagtaag gtaggctcta cttcaaaagg tgtatatttt tcactcattt tcatctccat
     6001 tctttcattg gttttaaaat aaaataatca tcactgtatg atatttgcaa ttttttcata
     6061 attttgtttg cgaagttttt tacctactaa aaacatatct acaatccacc aaatagtcca
     6121 attgactatc actaatatat atgctatgtt ctgcaaagat ttacttgcaa caatattaaa
     6181 aattattgga ataatcacaa atgctaaacg cacaaaacct aaaaccatat cacctatcat
     6241 aaaacgccct actccaaaag ggccaaataa aaaagttcct acccaaaaca ccaaagcagg
     6301 gctttttagt ttaagcatag gaagttgatt taacacatct ttttttcttt cttcgcttaa
     6361 gcgttcaaat ttttctttta gcgtaattgc cgctaaacca tctcttggta acttatcgcc
     6421 aatattagaa agaactgaat taaaatccat aacttctcct tgaaaattaa aaaatatctc
     6481 gaattattcc atactataac ttaattaata ttgaaatatt aaatatattt tatataaaag
     6541 attgaatatt tcaagtgttt ttaataaaga aattttaatg taaaattttt taaaggctaa
     6601 atttttaagg taaaaaatga caaaaaagag caagcgtgat atggcata
//
LOCUS       DARGED010000091         6598 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.091, whole genome shotgun sequence.
ACCESSION   DARGED010000091 DARGED010000000
VERSION     DARGED010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6598
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.091"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..583)
                     /gene="pglB"
                     /locus_tag="SFZ84_001351"
     CDS             complement(<1..583)
                     /gene="pglB"
                     /locus_tag="SFZ84_001351"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG8203462.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSALCRFYWIWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSALTYWLYKVTPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWY"
     gene            complement(587..1684)
                     /gene="pglJ"
                     /locus_tag="SFZ84_001352"
     CDS             complement(587..1684)
                     /gene="pglJ"
                     /locus_tag="SFZ84_001352"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8203463.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCSNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSINPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTGLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIACDALKYLLG"
     gene            complement(1672..2601)
                     /gene="pglI"
                     /locus_tag="SFZ84_001353"
     CDS             complement(1672..2601)
                     /gene="pglI"
                     /locus_tag="SFZ84_001353"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG8203464.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKHFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            complement(2594..3673)
                     /gene="pglH"
                     /locus_tag="SFZ84_001354"
     CDS             complement(2594..3673)
                     /gene="pglH"
                     /locus_tag="SFZ84_001354"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG8203465.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLVNALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPAMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKTLYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLIGCDDEIALAKKLELVLNNENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            complement(3670..5364)
                     /gene="pglK"
                     /locus_tag="SFZ84_001355"
     CDS             complement(3670..5364)
                     /gene="pglK"
                     /locus_tag="SFZ84_001355"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG8203466.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLAMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHVIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKHLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            complement(5358..6344)
                     /gene="galE"
                     /locus_tag="SFZ84_001356"
     CDS             complement(5358..6344)
                     /gene="galE"
                     /locus_tag="SFZ84_001356"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG8203467.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRSFKFFEQDLSDFQGVKASFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            complement(6402..>6598)
                     /locus_tag="SFZ84_001357"
     CDS             complement(6402..>6598)
                     /locus_tag="SFZ84_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEG8203468.1"
                     /translation="CESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLCAKKSD
                     RSYTEVFAKACESEISKVRS"
BASE COUNT         2364 a         1222 c          757 g         2255 t
ORIGIN      
        1 gataccacca aagataaatt cctataaata acggcaaggc aatcaatgaa aaaaagtctt
       61 tttttaaaat cattcttacc ataaaaaata aaataaacat aggtaaaaca attaccagca
      121 tatccgtatc ataataccca ctcatagtgc gattataata actgtttgct atacttgcta
      181 aaagagcagc tacaaagccc attaaaggac gtttgtattc attagctagt aaaataatag
      241 gaatcaccac caaagaagat aaaaaagtac tcatatataa aatgatactt tcaaaagaaa
      301 aaggtgtgac tttataaagc caataagtaa gcgcggataa agaagatcca tagtaactca
      361 aatcattagg ctgatgaaaa cctgctatca tatctcttgc gccctcagca aaggcatagc
      421 catcgtttga aatgatcatt aattgattat tgaaaaaata ctcattaaac tcacttgccc
      481 accaaatcca gtaaaatcta cacaatgcac taaaaacata agctaatata atcatcgcaa
      541 acaaaactaa ataagggttt tttaaatact cttttttcaa catcttttat cctaataaat
      601 atttcaaagc atcgcatgca atttttactt tatcaaaggc tttagcccta gttttagctt
      661 tgtttttata cgcttttctt aatttatcgt cttcaagcat agtttttaaa ccctgaaaca
      721 tagagttttc attatctact tctactaaaa gtccaaattc atcatcgcca aaaagctctc
      781 ttgcaccact tttatgatca gtgcaaacca ccgcacaaga acaagctaaa ctttcgatta
      841 aaacatttga aaaaccttca aacacagaag caaaagcaaa aaattcgcat ttagccatgt
      901 atttataagg attattatca aatcctaaaa gcaaaacctt ttcttccaaa tttaattctt
      961 taatcaaagc taaaagctca tctttaagca caccttcacc taaaatcaca agctttaagc
     1021 ctgttttcaa tctcgcataa gcacgaatta ataaagcatg atttttacct ttatcaagcc
     1081 tgcctacact taaaataaat ttatctttta aagctatgtc ttcaagggct ttttgcccta
     1141 tgttttctaa atcgatggca ttgtataaaa tttcacattt ttttggattt atactaaaat
     1201 tttgcaccaa atcttctaaa tttcccttag aattaggcaa gattaaatca gcttttgggt
     1261 aaagcaaaga aattaaaaat ttatttacca aagaattaaa attatttttc atatacatca
     1321 cacttggcgt agtgcattca ttgatcacaa ggcgagtttt gtttccaaac attcttgcca
     1381 ttaaggctat ataattaggt cgatttaaaa aaacaaattc tgtatcaatg cccaaattgc
     1441 tgcaaagttt tttgtatttt aaagccaaaa aaggtagttt taaaaatttc aaaataggat
     1501 tttcactagg ttttgaacat tctaaaaaat gaatttgaca ctctggaatt tcataagaaa
     1561 ttttatcatt catcaagatc aaatgcactt caaatttcaa acttaaaata ggcaataaag
     1621 tcgccacaac tctttcagca ccaccacttc ctaaagaata aataaaaatg cctaattttt
     1681 gcataaagcc acccgaattt ttgataattt ttcaatcata ttatttggaa ttatacttaa
     1741 aatgagtaat atcaaagcag gagcattgat ttttatactc aggcttttaa acaaacattt
     1801 ataaagggct ttataatttt ttgccagttt tgcataataa gctgccattt tataataact
     1861 cgcacaagtt tttttataat ctttatcctt actcattcta agttcatttt ctaaaatttt
     1921 agcaagctct aaatatccca aatagaccct atgagcattt ttactcgcac ccaaagtcac
     1981 gctatcttgc ctaaaaatcc tataaatcct aaaagcctta tggatataaa aacttttttc
     2041 cttgtataaa tttacccaaa gcgtggcttc attgccataa aattcttcat taaaatgctt
     2101 gttttcaagt agagattttt taaaaacaga aaaaaactct ccgctaaatt tagccattaa
     2161 aaaatctttt ttagaaattt cactatcttt ttccaagccc ttaccgctaa attccttgct
     2221 taaatttcct tctttttcta tcaaacaatt tccaaaaaca tgagcataac cctcatttgc
     2281 tttttgcatc aaggtgctta aagccccaga taaaagttca tcatcatcat ctaaaaaagt
     2341 tacaaactcg ccacttgctt gatctaagcc attattttta ttgccatttg ggccttgttt
     2401 gtaattttga tttaaaaaat acttaatgcg atcatcatct ttttgtaaat tttgcaccac
     2461 acttttagta tcatcgctag aattatcatc gcttacaata atttctaaat ctttaaaatc
     2521 ttgattttgt atgcttttaa tagccttttc tagtaaaact tgacgattaa aagttggtac
     2581 tataacagaa agtttaggca tttttaacct cagctataag cttaagccat tcttctttga
     2641 tatgagaaat ttcaaagtct ttacaccttt gtttggcatt atttacaagt tcttttctaa
     2701 aattttcatt atttaaaaca agttcaagtt ttttagcaag tgctatttca tcatcacaac
     2761 ctatcaaaag cccatcatga ttatctttga ttaaatcctt agcaccatta taataagaac
     2821 ttgaaattct acaaacctca aaatacaaac tttcaattaa aaccgttggc aaaccctcta
     2881 caaaagaaca aagacaaagc acttttgctt tttcataaag agtcttgaca ttttcaactc
     2941 gtcctaaaaa atcaactttt attcctaaag attttacctt gtattcaagt tcttgcctta
     3001 actctccatc tcctgctata acaaatttat aattttcttg caaattttta tccaaatgcg
     3061 ctatagcttt taaaaacatt gcagggtttt tgttgtgatc taaacgccct ataaaaagaa
     3121 ccaaattttc cttttcaaaa ctagaatcaa aaggaatttc atcgctaaaa tgacaagggt
     3181 ttaataaaag cctaaccctt tttacaaatc tttcataata caccttatca ctgcttccaa
     3241 gcacacttaa agcatcacaa aaaggatagc ttacccttct taaaaaacgc caaattttag
     3301 gttttaaata cgcttcattg ctatgctcac ttataatgag tggagtttta aaccctattt
     3361 tcgcagcaat acaagcaata ttagtcgtat ccaaaaaaga aataaaaaca tcagccttac
     3421 tttctttcaa agcctttctt aaagcaaaaa atttcttaaa acgacttgcg attttatgat
     3481 aaagcgtatc aaatctaaat tgttctaaac ttgtaacttt aacttcattt tcaagcttat
     3541 aaaaagattc tcctgcatga aatttaataa tacttacttc atgctctttg caaagtgcat
     3601 taactaaggt tactaaaaca cgctcagcgc ctcctgaatt taaagttgcg ataataaagc
     3661 ttattttcat catttctcct ctttaagctt accgtgttct aaacgataaa ccttatcaca
     3721 ttgcgttatc gtagaaaggc gatgtgcgat aataatcatg gttttatctt tagaaatttt
     3781 ataaatttca tccatgattt ttgcttcact ttgagtatca agagcagaag ttgcttcatc
     3841 aagcactaaa atttcaggct ctaaatataa agctcttgct atagctatgc gttgtttttg
     3901 tcccccgctt aaattactcc ccccatcacc cacttttgtt tgcactcctt gagataaatt
     3961 ttttataaaa tgctctaaat ttgcttgttt gataacccta ttaagttttt cttcatcaac
     4021 cgcatctcca aaagtgatat ttttagctat actgtcatta aaaagataga tattttgcgg
     4081 gatatagcct attttttggc gataattttt tgtattattt gcatttaatt cttgctcatc
     4141 aattaaaatt tgcccttctt ttggttttaa aagtcctatg ataagatcta ctaaggtgct
     4201 ttttccacaa ccactctccc ctataaaagc gattttttcg ccttttttaa tgtttaaatt
     4261 aagattttta aataaatgtt tttttccctc ataaccaaag ctaagattgc aaattttaag
     4321 ctcttgatta aagcttaatt tttcctcgcc caaattttct tcttcttgtc ttaaattttg
     4381 ataaataata tccaaagaag aatgataata aagcaaatca tgataacttg taataatacg
     4441 atttgcgctt ggcattaagc gataaagtgc taaaacaaaa atagaaatcg tggataaaat
     4501 acctgaaata tcactttcat ttttcaacac caaaaatacc acgataaaaa caagtacaca
     4561 aaaacctatt ccttcaagat aaattctagg caccgcagct acgctttcgt tggtaatatt
     4621 tgctttagaa aaagcttcac tttgcgcttt aaaaagactt aatactccat cttctttggt
     4681 tttaagctta ataaatttga aattatttaa atttgtattt aaaatttcaa agaaattttt
     4741 catcgcttct tcgcgtctta ctcctgcttt tttaatgata gggcttaaaa ttttcactaa
     4801 aataaaggca tttaacacca taaaaatact taaaaataaa gtgattttat aattaatcaa
     4861 aagcattaaa gcataaagca aaagcactac aaaaatttca ctcatcaaaa gtaaaaatga
     4921 tgaaatcata gtgcttagat tataaacttc ccctgtaatg gactttaaaa tttcagattg
     4981 atttttttga gtaaattttt cataattaat atttaaaaat ttagaaaaaa ccttataagc
     5041 gatcacatga taacgccctt tagaaaatct tgctaaaaga tgaaaataat acgcatttaa
     5101 caaagctcta aacacataaa aaacaataag ccccacccca aaataaacaa tgatttcaaa
     5161 aacagggata ttaagatatt cttttaagct gattaaatat ttattacgat caaaataaga
     5221 aaaatcactg gccaaagtga taaaaggcat tgccaaagaa atcgcaaaag tttctataaa
     5281 agaaacaaat actgaaaaaa caagcaaaaa aaataaaaaa tttttatctt ccttgcttaa
     5341 aataaaaaaa agttttttta acactgcttt tcccaatcaa aagcagattt acaaataagc
     5401 tctaaatcat catatttagg ctgccaagaa gtaagatttc tgattttact tgcatcagaa
     5461 atcaatacac taggatcacc cgcacggcgt ggggcaagtt ctactttaaa atccactcca
     5521 ctaacttttt tcatcgcttc aatcacttct tttacgctaa aaccatgtcc ataacctaca
     5581 ttaaaaacat tgctttcatt ctcttgtaaa taatccaaag ccgctaaatg cgcacttgaa
     5641 atatcatcta catggataaa atctcttatg caagtaccat cttttgtatc ataatcatcg
     5701 ccaaatatga aaagtttatc acgttttcct gcggcacatt cagctgcaac ttttatgagt
     5761 aatgttgctt ttggatagcg ttgtcctaaa gtataatcca tacaagcacc tgcaacatta
     5821 aaatatctta aaatgcaatg cttaaattca ggatttgcca tacttgcatc acgcaaaacc
     5881 tcttcgctca taagcttact acgcccataa ggattaatag gtgctaaagg gcttgtttcg
     5941 ctcacaacgg gagtttgtgg ttcgccataa gtggctgccg ttgaagaaaa tataaattta
     6001 tttactccag tttgtaaaca agtttcgata agatttgtcg tattaacagt gttgttcata
     6061 taatatttta aagggttttg catactttca aaaacttcaa tgctcgctgc aaaatgcaca
     6121 atagcgtcaa atttttctct ctcaaacgat gcttttacgc cttgaaaatc acttaaatct
     6181 tgttcaaaaa atttaaaaga tcttattttt tgcaaatctt ctattgcgat tttagaaccc
     6241 ttagaaagat tatctaaaac acaaatttca tgatctgttt ttaaaaattg tcttaaagta
     6301 tgagaaccta tataacctgc accaccgcta ataagaattt tcatcatcat tccttttttt
     6361 aaaaatgtca aaaataaatt ttaatatatt ttcttaaata cttaagatcg aacttttgaa
     6421 atttcactct cacaagcttt tgcaaaaact tctgtataag aacgatctga tttttttgca
     6481 cacaagaaat ctctcatata agaaagaaaa ccaacataat cttcttcatc aacattagct
     6541 ttaataagtt catattttaa aaaaagcata taggtgttta aaacatcact ttcacaat
//
LOCUS       DARGED010000092         6521 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.092, whole genome shotgun sequence.
ACCESSION   DARGED010000092 DARGED010000000
VERSION     DARGED010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6521
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.092"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            244..435
                     /gene="rpmI"
                     /locus_tag="SFZ84_001358"
     CDS             244..435
                     /gene="rpmI"
                     /locus_tag="SFZ84_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG8203469.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            529..882
                     /gene="rplT"
                     /locus_tag="SFZ84_001359"
     CDS             529..882
                     /gene="rplT"
                     /locus_tag="SFZ84_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG8203470.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(930..1866)
                     /locus_tag="SFZ84_001360"
                     /pseudo
     CDS             complement(930..1866)
                     /locus_tag="SFZ84_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854317.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
     gene            2501..3358
                     /gene="cheP"
                     /locus_tag="SFZ84_001361"
     CDS             2501..3358
                     /gene="cheP"
                     /locus_tag="SFZ84_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG8203471.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKSENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            3386..3865
                     /gene="cheQ"
                     /locus_tag="SFZ84_001362"
     CDS             3386..3865
                     /gene="cheQ"
                     /locus_tag="SFZ84_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG8203472.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(3834..5144)
                     /locus_tag="SFZ84_001363"
     CDS             complement(3834..5144)
                     /locus_tag="SFZ84_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203473.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKISVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(5128..5304)
                     /locus_tag="SFZ84_001364"
     CDS             complement(5128..5304)
                     /locus_tag="SFZ84_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8203474.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMEIKNEQNP"
     gene            5397..5870
                     /gene="moaC"
                     /locus_tag="SFZ84_001365"
     CDS             5397..5870
                     /gene="moaC"
                     /locus_tag="SFZ84_001365"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG8203475.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            5848..6111
                     /locus_tag="SFZ84_001366"
     CDS             5848..6111
                     /locus_tag="SFZ84_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG8203476.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            6101..>6521
                     /locus_tag="SFZ84_001367"
     CDS             6101..>6521
                     /locus_tag="SFZ84_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203477.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVAKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDE"
BASE COUNT         2388 a          877 c          965 g         2291 t
ORIGIN      
        1 ctttaatcaa atttagagca gagctattct gcaaaggatt agataaggtt aaattttgat
       61 atggatttgc cgaatttata gtcattttaa atctttccaa aatattgctg atttttttat
      121 aagcaaaatg cgtgccaagt tttttaaaaa ttaaattcag tcaaaaatta gaaaaaattt
      181 gatagtattt atcttttctt ttaaagtttg aaaaataaaa atttatctaa ataaggaaag
      241 cgtatgccaa agatgaaaag cgttaaaagc gcagttaaac gcttcaaagt aggtaaaaat
      301 aaaatcaaaa gaggctcagc ttttagaagt catattttga ctaaaaaacc tgcaaaaaga
      361 atgcgtgatc ttcgcacagc taaatatgtg catagcacaa atgtaaaagc tgttgaaaaa
      421 atgctaggaa tttaagtttt tgactaaaag tcattcaaac tcccctctga gataaaattt
      481 caagggcaag ctccaaattt ggacgccact ttatgaaagg aaataaaaat ggcaagagta
      541 aaaacaggtg ttgttagacg ccgcagacat aaaaaagttt taaaattagc gcgtggtttt
      601 tatagtggac gacgcaaaca ttttagaaaa gcaaaagaac aactagaaag aagtctagtc
      661 tatgcttatc gtgatagacg ccgtaaaaaa agagacttcc gccgtctttg gattgtgcgt
      721 atcaatgctg cttgcagact caatgattta agttattcaa gatttatcaa tggtcttaaa
      781 aaagcaggta ttgaacttga tagaaaaatt ctggcagatt tagctatgaa tgatgctgct
      841 gcttttgcaa aaattgcaga ggccgcaaaa aaagcacttt gattttttag tgtaagaatt
      901 tcaagatttt tgatttcttg aaattcttaa ttttttagta ttaatttagt ttagctagaa
      961 catcttcata acatttgagt tgatttaaga ttattttatt aatctcattt gtcatttcta
     1021 gtttttgacc ttttatatta agataatagt atttaaaatc actgtatttt tgtatgaaag
     1081 tttttaaata tctaggtttg aaatcattaa aattttcaac ttcataaaaa aatattgcca
     1141 ctaaactttt tgcaattccc gctccataaa tttctccaaa actagaaaaa ccaactatgg
     1201 gaaaattatt aaaatggatt tgatttaaat gttctttgtt gtgaagtctt cttaagatac
     1261 aatcattaaa aattgctcct agtggttttg gtttattaag agaaaatttt tcataatctt
     1321 tttttatagc ttcaataaaa tttgtttttt taagcaagct taattcctga gcgctttcta
     1381 tatcacaata actaaataat gttttatttg ggttgatttt tataggggaa ataagatagt
     1441 cttctccaat ttttaaagca aaagtatatt cttgcatttt atttttaagt tcttcaaaag
     1501 tgcagttaaa ataattacat aaaacttcaa ccgcgttgat ggattgaaag gttttttatt
     1561 aataaattcg cgtacggttt tatcatataa gcttacatca agtatggtaa aagtaatgtt
     1621 gctttgagga ttgaaatttt gagacttcat taaattaaaa cggtatttag gtttaaattg
     1681 aacatgtatg cttaaagctt gatttttaat atttctccgt tataaaatat aaatgctccg
     1741 ctaaagtcca tgtttccgct agacccaccc cgctactaaa gcacaaggat aggggttgtg
     1801 tttgtacaaa agttctaaaa gagaactttc gctttgactt aaaccatcat aaattaaata
     1861 atgcaaagta tttatgcagt gtgcttcaaa aggtatattt ataaataaaa cttctttttc
     1921 tatcagtttt tttctttctg tataatcttt tatatcacta aaaagcttga ttttatttgt
     1981 gcaaagattt tctatcatat cttcactaaa aagtatcaag cttattcctt ggatattttg
     2041 tttataagga ctgttttcaa tgtttgagtt agaatcaagg ttgcataata aatcagtagc
     2101 actgcttaag atgatatcac attgctcatt tatagaattt tgaatcttat ttcctatgat
     2161 cgctagatta agttgattga cacaaagcct ataattaatt ttggcttgat gtttattttt
     2221 tttaattttt cttcaagttc attttattga agatatggag cttctaaaac ttttttactt
     2281 cttctttttt tgttgagctt ttatttttaa aattaaaaaa acatcaattt aactccatta
     2341 aaactatttt ttaattacta gttaactaaa tcaagacacc ataaattcgg catttatttg
     2401 taatttttat tataccttaa gtcataaaaa atgcaataag taaattaaaa tttagatata
     2461 attgcaaatt ataataatat taattaagga taaattaaat atgattggag atatgaatga
     2521 gcttttatta aaaagcgttg aagtattgcc acctttacct gatactgtaa gtaaattaag
     2581 aaaatatgtg agcgaggcta attcaaatat agaaactatg aaagttgctg aaatcatttc
     2641 aagcgatccg ttgatgacgg ctaagctttt gcaattagca aattctcctt attatggttt
     2701 tacaagagaa attacaacca taaatcaagt gattacttta ttaggcgttg gtaatatcat
     2761 caatatagtt atggctgact ccattagaga taattttaaa atagacgttt caccttatgg
     2821 tttaaatact caaaattttt taaaaacgtg caatgaagag gcaactttta tcgcaaattg
     2881 gcttaatgat gaagataaaa aactttctca tcttttagtt ccttgtgcaa tgcttttaag
     2941 gcttggtatt gttatttttt caaattttct tatacaaaat cataaggata aggatttttt
     3001 agctttttta aataaaagtg aaaatcttgc tttagcggag aatgaatttt taggcgtaga
     3061 tcatatttct ttcttgggat ttttgttaca tcgttggaat tttgatgatg ttttgattga
     3121 aagtatatgt tttgttcgca ctcctcatgc tgctcgcgaa aaagtgaaaa aatccgctta
     3181 tgctttagca ataacagatc atctttttgc tccgcatgat ggctcttctc catttaacgc
     3241 aaaagctgca gttgctttac ttaaagaggc aaaaactcaa ggaattaatt ttgatttaaa
     3301 caatctttta tctaagcttc ctaacaaagc taaggaaaat ttaaacaaag aagattaaag
     3361 agccttttta aggctctaaa ttgtagtgat gaaaagttta atcttacctc ctaatgaatt
     3421 tttagatcac tatattttaa acgctgaatt tcatcgtttt gctggaattt caaaaaatgc
     3481 ttataaattt tggaaaaatg tagaaatagg tagatatcaa ggaacaagaa ttatattttt
     3541 gcatagaaat tgcattttag aaaaacatca gcaagcttta aggcaatgta gtggtttaaa
     3601 tggttttgta ttggcaagtg ctttttgttc ttttactgga ttagctccct ctcatttagt
     3661 ggaaaaaaat aattcttcta tttataaact tttagagctt aaggagattt gcgggattaa
     3721 atttgttaat ttaaaaaaat tttatgattt tttagggcta aattatcatc agcatattta
     3781 tatagaaaaa tgccattttt ttagcccagc tccttttgaa aagcgtatta aaatcactga
     3841 gagtatgtgc gttgggtatt attaagataa gaaaaaataa atgcacatag caaagctata
     3901 atagccaaaa agaaaacata aagtcccaaa gaaaaacgcc aaaaattact taaattattt
     3961 aaggcaaaac tatgcaagaa aaaagcaagt tgcggagtta aacctccagc tatagcataa
     4021 gcaatattat atgaaaaaga aagtcctgaa aatttaattt ttgcatcaaa tacttcactc
     4081 attattaaag ggcaaaaatt catcaccccg ctaaaaaaac atacaagtaa atataagcaa
     4141 gctactaggt taaaatcagc attttgtcta tataaagtat taaaataaag caagctcgca
     4201 attccaaaaa aaacactaaa aaatacacaa gatttaataa cgcttatttt atccgctaaa
     4261 attccactta taatacaccc taggcaaata agcaaaattc cacctatttg aagataggtt
     4321 tgtatagaag tattaatttg aagtattttt gccatataac taggcataag caaaatcatt
     4381 acaacaatac aacctgtcaa aacccaagta atcatcatag aaagaacaat tcccatttta
     4441 gcttttttaa acacttcttt taaaggaaat ttttctaaag ccttgtcttt tttcatttgt
     4501 tcaaaaacag gagtttctct taaaaatttt ctcaaataag cagaaataat cccaaaaatt
     4561 ccacctaaaa agaatggaat tctccaagcc cattcatgaa gttcttcttg ggtataaatt
     4621 ttattcataa ttaaaaaaac taaactacct aataaaattc cacctacaac cgaagcggtt
     4681 aaaattccca aataagttct tttttgacct tgtggtgcgt gttcgtatac aaaaacccaa
     4741 gctccaggga gttccccgcc tatagctata ccttgacaaa tgcgtataaa aactaaaaat
     4801 acaatgcaaa gaaaacctat gctttcataa tttggaataa aagctagagt aaaagttgga
     4861 ataaccatta acaaaatact aatcataaac attcttttac gtccaaattt atctccaaaa
     4921 tgtgccagta tcacaccccc taagggacgc gctaaatatc cagctgcaaa tattccataa
     4981 gtattaaaca tttgccaaaa actacttaaa tcttttggaa aaaagtttgt tgaaatataa
     5041 tttgcaaaaa atacaaaaat aataaaatca taaaattcta aagttccacc taatgatgaa
     5101 agtcctaaaa cttttatatc tttttggtta agggttttgt tcattcttaa tctccatctc
     5161 ataaaaatca tcatcattgt tatcatcatc gtattcataa tcatcatcat cataattata
     5221 atttttatgg tgattttgtg tatattcttc atcttcattt tcataatcat cgtaatttaa
     5281 atcttcttca tcttcataag ccattgtttt ctccttaaat aaaaatacaa agcttatttt
     5341 atcttaaatt tgtttggttt tgctataatt tttataattt tttaaaaggt gaatttatga
     5401 aattaagtca tttagatgaa aaaaatcatc ctaaaatggt agatgtaagc gataaaaata
     5461 ttactttaag aatagccaca gccagtggta taatatatat gagtcaagaa gcttttgatg
     5521 taattaaaaa caataccgca aaaaaaggtc ctgttcttca aacggctatt attgcggcta
     5581 taatgggggc taaaaaaaca agtgaaatta ttcctatgtg ccatcctttg atgctttcta
     5641 agattgaaac agatattgtg gaatttgtta aagaatgtgc atttaagctt attgtaacag
     5701 ttaagtgtga aggtaaaaca ggagttgaaa tggaagcttt aagtggagtt agtataggac
     5761 ttttaactat atatgatatg atcaaggcta tagataaatc aatgagaatt acggatatag
     5821 tgcttgaaag caaagaagga ggtaaaagtg gtaaatttgt gcgatcttaa aaaagaacct
     5881 cagatcaatt atcctacttt ttgggattat aaggtgattt ttgaggtgca tattaaggca
     5941 agtgaaattt ttgaagaaat tttaggtcaa agagaatata aatttgaaca ttcgaattca
     6001 agtgcgagtg gaaaatatca aagttatttg ttaaatgttt atgttgatag caaaaaagat
     6061 cgtttggata tatttgataa attaaaagct aaagcaaaat ttgtacttta agaaagaagg
     6121 aaaaatgaaa aatactttaa ttatttttga aaattcttta tcaaatctcg gtaaagatga
     6181 agcaagtgat ttacttgaag acttgagttt taatcttgcg tataagcaaa tttcacataa
     6241 tcctcatgaa acaaaaaaag ttttaaattc tcttttggtt gaatttttaa ctattttgaa
     6301 aaaacttgat ttttttgatg atgaaaatgt tgcaaaggtt atcaaagctt tggttaaggc
     6361 gagtattgta gatgctcaaa attcacttta tgagtatatt agcgaagctg aattattaaa
     6421 caaacagatt gaaaatcaaa agaatttgat taaaaatcaa atcagcgata atttttttga
     6481 attcgagaat attttacaag aatgttcttt ttgtgatgaa t
//
LOCUS       DARGED010000093         6409 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.093, whole genome shotgun sequence.
ACCESSION   DARGED010000093 DARGED010000000
VERSION     DARGED010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6409
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.093"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..460)
                     /gene="rsmG"
                     /locus_tag="SFZ84_001368"
     CDS             complement(<1..460)
                     /gene="rsmG"
                     /locus_tag="SFZ84_001368"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG8203478.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNAFKADIITSRALMDVKPLLEICKNLKDEN"
     gene            complement(461..1021)
                     /gene="ribA"
                     /locus_tag="SFZ84_001369"
     CDS             complement(461..1021)
                     /gene="ribA"
                     /locus_tag="SFZ84_001369"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG8203479.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1079..2062
                     /gene="hemB"
                     /locus_tag="SFZ84_001370"
     CDS             1079..2062
                     /gene="hemB"
                     /locus_tag="SFZ84_001370"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG8203480.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIINPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2059..2979
                     /gene="argF"
                     /locus_tag="SFZ84_001371"
     CDS             2059..2979
                     /gene="argF"
                     /locus_tag="SFZ84_001371"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8203481.1"
                     /translation="MKHFLTLRDCSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDKKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            2976..3467
                     /locus_tag="SFZ84_001372"
     CDS             2976..3467
                     /locus_tag="SFZ84_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG8203482.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            3454..4809
                     /gene="hemN"
                     /locus_tag="SFZ84_001373"
     CDS             3454..4809
                     /gene="hemN"
                     /locus_tag="SFZ84_001373"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG8203483.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDVEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            4811..6076
                     /locus_tag="SFZ84_001374"
     CDS             4811..6076
                     /locus_tag="SFZ84_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8203484.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKINYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6073..>6409
                     /locus_tag="SFZ84_001375"
     CDS             6073..>6409
                     /locus_tag="SFZ84_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203485.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTS"
BASE COUNT         2273 a          779 c         1227 g         2130 t
ORIGIN      
        1 tattttcatc ttttagattt ttgcaaattt caagcaaagg cttgacatcc attaaggctc
       61 ttgaagtgat gatatcagct ttaaaggcat tcttgtattc ttgaactttt tctttgtaaa
      121 tatgtaaatt tggaagttca cattctattt ttaatgtccg caaaaaggca gcttttttgg
      181 gattgggttc gaaaagatga aaattgcttt gcagtaaaaa agctaaaaat acagctggaa
      241 atcctgcgcc acttcctata tcggcaatat tttttgcttt agaaaaatca taaaaatcta
      301 aaattttaat actatcaaag atattttcat ctatattttt taaatgagta agattgtgaa
      361 tgcggttaaa tttagataat aattctttat aaatttttac cttttcttca aagtttttta
      421 aatcgtagtt ttgcaaaaaa tcataatctt taaaaatcat ttatttaaga tgtcccattt
      481 gagtttgttt tatgtttaaa tactctacat taaaacgatt aggttctatt aaaatcggta
      541 tgcgtgtgat gattttttct ttgatagaat ctagcttttc agggttattt gtgagtaaat
      601 taaccttaga aatttcatag tgtttgagta taaattctac aatttcataa gttctctcat
      661 cggctttaaa gccaagctga tgatttgctt taatcgtatc aaaaccttta tcttgtaaag
      721 cataagcatt aaccttgtta aaaagcccta taccccttcc ttcttgtcta agataaatca
      781 ccattccgcc attcttttct atatatttta gcgaaaattc aagctgttct ccgcagtcgc
      841 attttaaact tcctaaagca tctcctgtta agcactctga atgaattctt agattgagtg
      901 tatcttttgg agtgttttta aatatgcata aatgttcttt atcgttttct ttgaaacttt
      961 gcatttggaa atttccccat ttgctaggta aattcgcaat ttctgaaatt tttatttcca
     1021 tttactactc tctataatca aatttatgtt aagattttag caaaaaaagg acaaaaaaat
     1081 gtttaaaaga tttagaagat taaggcttaa tgaaaactta agatctatgg taagggaaaa
     1141 ttctttaagt gtaaatgatt tgatttatcc gctttttgtg gttaatggaa cggggataaa
     1201 aaaagaaatt tcttctatgc ctgatgtgtt tcaaatgagt ttagatgaaa ttttaaaaga
     1261 gtgtcaaaat gtagttaatt taggtattaa agccattata ctttttggcg ttttggaaaa
     1321 tgagaaaaaa gacagctgtg gaagcgatgc tttagatgat gaagggcttg ttgcaagaag
     1381 tataagagag attaagaaaa attttccaga tctttttata atcagtgatc tttgtttttg
     1441 cgaatacaca gatcacgggc attgtgggat tatcaatcca aaaacaaaaa gtgtggataa
     1501 tgatgtcact ttagaaattt cagccaaaca agccttagtt cacgcaagag caggggtaga
     1561 tatgatagca cctagtggaa tgatggatgg tattatcact actttgcgca aagctttaga
     1621 taaagaaggt tttgaaaatt tgcctataat ggcgtattct actaaatttg cttcaagtta
     1681 ttatgggcca tttcgagatg tagcagaatc agctccaagt tatggagata gaaaaagcta
     1741 tcaaatggat tttgctaatg gtaaagaagc tttagaagaa agcttggaag atgaagcaca
     1801 aggagctgat attttgatgg taaaacccgc tcttgcttat cttgatgtgg ttaaagaaat
     1861 atcccttcat tctaacttgc ctttgtgtgt ttataatgta agcggagagt atgctatgtt
     1921 aaaggcagct aaaaatgcag gagtgattga ttatgaaaaa gttttgtatg aaactatgat
     1981 agcttttaaa agagcagggg caaagcttat catcacttat catgccaaag aattagctaa
     2041 aatgttaaaa ggagaaaaat gaaacatttt ttaactttaa gagattgttc taaggaggaa
     2101 attttaagcc ttgtaaatca tgctagcgag ttaaaaaaag agcctaaaaa acttttacaa
     2161 gataaaactt tagcaatgat ttttgaaaaa aactctacaa gaacaagaat ggcctttgaa
     2221 ttagccataa cagagcttgg cggaaaggct ttatttttaa gtagcaatga tttacaactt
     2281 agtcgtggcg agcctgtaaa ggatacagct agggtggtag gggcgatggt tgattttgtg
     2341 atgatgagag tcaataaaca tgaaacttta ctcgaatttg caagatattc taaagcccct
     2401 gtgatcaatg ctttaagcga gctttatcac cctactcagg ttttaggaga tttgcttact
     2461 atcaaagaat ggaataagat gcaaaatggt atagcaaaag ttgcttttat cggagatagt
     2521 aacaatatgt gcaattcttg gcttattgcg gctgcgattt tgggctttga atttagtata
     2581 gctataccaa aaaactataa aattagccct gaaatttggg aatttgctat gaaacaggct
     2641 ttgatttcag gagctaaaat ttccttaagt catgataaat ttgaagcctt aaaggataaa
     2701 gatgtagtca ttaccgatac ttgggtttct atgggtgaag agaatgaaaa agaacgcaag
     2761 attaaagaat ttgaaggatt tatgatcgat aaaaaggcta tgagcgttgc caataaagac
     2821 gcgatattgc ttcattgttt gcctgcttat aggggttatg aagtgagtga agaaattttt
     2881 gaaaaacatg cagatgtgat ttttgaagaa gcaagaaatc gcctttatgt ggtaaaagcc
     2941 ttgctttgct ttttggataa tcagagagga agagaatgaa agagctagaa aagtatagca
     3001 cttgcttaaa acgcattgat gaatttagtc aaaatctagg aataaagaaa aaagatagaa
     3061 cgatttttaa aatgaagcaa agcgagaatg aaaacgaaaa atgtttagtt cttgaaaatg
     3121 gaagttttga ttctcctgag ccttggtttg tgatcgatga aaacgatgaa attcacactt
     3181 tgctttcttt gcaaagtctt aagaatatac ttgaaagttt aaaacaaagt caaaaagaga
     3241 attttgaatt gcgtttagaa aaggcgattt atcaacaaat tcctgtagat tttaacgatg
     3301 tttggacggt tgctatggat gagatcaagc aaaaggcgca aaatggcacc atggaagtta
     3361 gtattgatct tgaaaaatta atttctaaaa tcaaacaaga gcatccaaat ttatttgtag
     3421 atatgcaagc gatgatagaa agggtaaacc aaaatgagag attataaagc ttttgtaaaa
     3481 tactctaaag caggaccacg ctacacttct tatcctacag cagtagagtt taatgcaaat
     3541 ttcaaatacg aagaatatat agaaatttta aaaaagcaag atagatcttt atcgctttat
     3601 tttcatttac cattttgtag gagtgcttgt tatttttgtg gttgcaatgt tatttataca
     3661 gccaaagaag agagtaaaga aaggtattta acttatattt ttaaagagct tgatatttta
     3721 agtactattt tagatactaa aagagaagtg gtgcaaatgc actttggggg cggaactcca
     3781 acttttttta gtgctaaaca acttcaaaat ttgattttaa aaatcagatc tgtttttgga
     3841 aatttttcta aagatgtaga gattagctgt gagatcgatc cgcgtttttt aaatgaggaa
     3901 caagccacag ttttaacgca aaatggcttt aatcgtatca gctttggagt gcaggatttt
     3961 gatgaaaaag ttcaaaaaga aattcatcgc atccagcctt ttgaattaac acaaaatgct
     4021 ttaaatcttg taagaagcaa agggataaag tctgtaaata tggatttaat ttatggtttg
     4081 ccttatcaaa atttacaaag ctttacacaa actttagaaa aagttatgct tttaaaccct
     4141 gatcgtttgg cgatttttaa ttacgctcat gtgccttggc ttaagaaaaa tatgagaaaa
     4201 tttgatgaaa ataccttgcc aagtcctgat gttaagcttg aaattttaga attttgtgag
     4261 aaatttttaa gcaaaaatgg ttataaaatg ataggaatgg atcattttgc aaaagaaaat
     4321 gatgagcttt ttaaagcttt agaaaatgga actttgcata gaaatttcca aggttatact
     4381 accaaaggcg gtgctgattt agtcggtatt gggcttacaa gtataggcga agggcaaaga
     4441 cattatgcgc aaaattttaa agatatgtca agttatgaag ctgcattaga tagaggagtt
     4501 ttgccttttg aaagaggcgt agctttaagc gatgatgatg agcttagaaa agcagtgatt
     4561 atggagttaa tggcaaattt taagcttgat atcaagtcaa tagaaaaaga attttgcatt
     4621 gattttcagg agtattttaa agaggattta aaagctttgg aagaatacaa agattttatt
     4681 aattttgatg aaaattttat caaagtcaat gaaacaggcg ttttgcttat aagaaatatt
     4741 gctatgtgtt ttgatgctta tatgaaaaac attagtgaag ataaaaaagt attctcaaaa
     4801 acggtgtaag atgaaattta gtcaaataag tgatgcttgc gttaaatgtg gcaaatgtat
     4861 acctgtttgt actatacatg aagaaaatcg cgatgaaatt actagtccaa gaggattttt
     4921 agatctttta gctgcttata aagagggaag tctagagctt gataaagaag ctaagaaagt
     4981 ttttgaatct tgttttttat gcaccaattg tgttgaagta tgtccaagta aattaagagt
     5041 agataatgcc atagaagaag ttcgttatga tatagctaaa aaatttggta tagcttggta
     5101 taaaaaactt atttttttct ttttaagaag acgcaaaatt ttagatttgg tagctaagct
     5161 tggctatgtg tttcaaagtt gtgcgtttaa aattcaaaat gagaatgaaa atacaggtat
     5221 gaaggcaaga ttttccatgc cttttgttaa aaagggaaga ttgcttacaa gttttaataa
     5281 aaaaagtttc ttaaattcta atccaaaatt tatcaataat gatggagaaa aaacaatagg
     5341 tttttttgta ggttgtttgg cgaattattt ttacatagat acggctaatg cagtgcttaa
     5401 aatcgctaag gaattaaaaa tcaatgtgga tttgatgaaa gaacaagtgt gttgtggagc
     5461 gccgcaattt tttacgggtg attttaaaag tgttgaagtt ttggctaaaa aaaatattga
     5521 gtattttgaa aaaaaattag aaaaattaga tgctattata gttcctgagg ccacttgttc
     5581 ggctatgtta aagatagatt atgaacattt ttttataatg caaaatgatt tagactgggc
     5641 aaaacgcgca aaatgtgtgt catctaagat atatatggct agcgagtatt tttataaatt
     5701 tacttcttta gaagaaattt taaaaacaaa aaataaaatt aattatagca ttacttatca
     5761 cgatccttgc catgcaagaa aaatgcaagg ggtttttaaa gagccaagag aacttttaaa
     5821 aacaaattat cattttgtag aaatgagtaa ttctaatact tgttgcggtt ttggcggggt
     5881 gggtatgcaa acggattatt atgatagagc cttaagtgta gggcttaaaa aagcacaaat
     5941 gatcgatgaa agtaaggcta gtgtggtaag tgccgagtgt tcagcttgca gaatgcaaat
     6001 ttcaaatgca ttagaacaaa attcaagcaa ggttgttttt gctagtcctt tagaacttat
     6061 agcaaaagct ttgtgatgat gaagatagta tttaaaggca aaagttctga atatgaaatt
     6121 caaagatcgt gcttttgtgt tgatgctttt gtgattaaag ataagattga agaacgagat
     6181 ggtgttgatt ttatcacttc aaatgtagat cttttggaat ttagtgatga cagttttact
     6241 tttgaagaaa ttgtaaaaca ttttaatatt tgtgatagtg aagatatgat tatcgttgaa
     6301 gattttgaca tgaaatcaaa caaagataat caaaaccaag aagatgatat agaacacaac
     6361 atcttaaaat ccgaaaaaat aatacatgaa aacacaaaac aaacaagta
//
LOCUS       DARGED010000094         6374 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.094, whole genome shotgun sequence.
ACCESSION   DARGED010000094 DARGED010000000
VERSION     DARGED010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.094"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1531)
                     /locus_tag="SFZ84_001376"
     CDS             complement(<1..1531)
                     /locus_tag="SFZ84_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG8203486.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NA"
     gene            1695..3055
                     /locus_tag="SFZ84_001377"
                     /pseudo
     CDS             1695..3055
                     /locus_tag="SFZ84_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
     gene            3052..4060
                     /locus_tag="SFZ84_001378"
                     /pseudo
     CDS             3052..4060
                     /locus_tag="SFZ84_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(4016..4459)
                     /locus_tag="SFZ84_001379"
     CDS             complement(4016..4459)
                     /locus_tag="SFZ84_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8203487.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFTPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(4464..>6374)
                     /gene="uvrA"
                     /locus_tag="SFZ84_001380"
     CDS             complement(4464..>6374)
                     /gene="uvrA"
                     /locus_tag="SFZ84_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG8203488.1"
                     /translation="ENGAVKIMYGFNKSYYYKFLIAFCEQNEIPIKIPFMQLNEEQKR
                     LVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKDCGGHRLK
                     PESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKLISKPILKEINERLFF
                     LYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKL
                     IKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGEVVFSGTYKELLKSKS
                     ETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPLQNLVAITGVSGSGKS
                     SLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQSPIGRTPRSNPATYT
                     GAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVC
                     DTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKIKQKLDTLVKVGLDYL
                     TLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLV
                     DLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVEKVAKEHKKTRSYTGY
                     YLDLELKNTQKS"
BASE COUNT         1993 a          993 c         1080 g         2308 t
ORIGIN      
        1 gtgcatttgt atcaagcttt atgccatttt cttccatcat cataatgatt ttaatgaaat
       61 caaattcgca gtttttagca agttctaata aaggagtttc aagatttttt aaaaaataaa
      121 gataaaatct taaagtgata taagcatctt ctgcagcgta tttacaagct ttttcaagtt
      181 ctacacttgc aaaattttct ccttttttaa caaggctttc aaaatgcaag gtttcgtaat
      241 taaaaagtct taaggctaaa tcatccatat ttactcttaa agaaggattt ttaagccatg
      301 ccaaaatcat tgtatctgcg tatttttgag gtaaatttaa gtcaaaattg ttttgaatga
      361 ttttaaaatc atatttgaga ttgtgcccta taacaaaatg attaaagatt acttctatag
      421 cttttttggc actttgcaat gagatttgct cacctactcc aagataatta tgagttaaag
      481 gcacgtaaaa ggcttcattt tcattcatgc aaaaactaaa accaacaatt tttgcttctt
      541 tagtatcaag tcctgtggtt tcggtatcaa aagcaataat actttcttta tcaagggtat
      601 ttaaaatttc aaaaagtttg ttttcatctt gtactaaagt ggctttaaaa cctaaatttt
      661 tatctttatt atcaggattt tgacgcagtt ttttaagcaa agtattaagt tcgtaatgtt
      721 ctaaaatttc aagtattttt aaaagaggtt cttcatcagg ataagtggct ttttctatga
      781 gattttgtac ttctaaattg tcatacaaag aagctaattt tttgcttaaa aatgcatttt
      841 ccttaccctc taaaagcaag ttacgacttc tttcgttacg tactagggtt aaattttcat
      901 aaattccctc tatgctacca aactcatcaa gcaaggtttt agctcctttt gcacctatac
      961 ctttaacgcc tggaatatta tcagaactat ccccacaaag agctaaaaaa tctctgattt
     1021 gattaggttt tactccgtat ttttctaaac acgctgcttc atcatagtcg tttttagaaa
     1081 taggactgta aatgcttgtt ttaccatctt ttatgagttg ataaagatct ttatcttgag
     1141 tgataatgcg tacaaaaata tccctatctt cacaagtttt tacaaaagaa gcgatgatat
     1201 catcggcttc ataaccttct tgagaaacgc ttataaaacc cattttttct atcatcttta
     1261 tgcaaattgg aatttgttct agaagttcag gcggtggtgg agtgcgattt tgtttatagt
     1321 ttggatcaat ttcactacga aaagtttttc ctttggaatc taatgcaaaa acaatataat
     1381 cacttttata ttcatttttt aagctataaa taaaatttgc aaaaccgcta atcattccac
     1441 tagcttgtcc ttgtgaattt ttaaaacctt ttaatgcgta gtaaagtctg aaaaaaaatc
     1501 caaaagtatc aataatagtt aaagttttca taataatttc ttcttttgat aaaatatatt
     1561 ttttggttat attatttcaa aattttgctt aaaatgtctc gaaatttaaa gatatttaag
     1621 cgaaaatact tcaattttta gtcataatat cgagtagagt aaaaatttta tatgaataat
     1681 gtaaggaaaa tgtaatgaca aatcagcaaa ttgatggaat tgcagataag aattttaaca
     1741 cacctgaagg tagaaaagtt tttaaaaagg cagttttttc ttgctgattg ggaactgcta
     1801 tggaatatgc agattttgca ctttatggtt tagcagctgc aacaattttt tcagaagtat
     1861 tttttcctga gcaaactcca gtaattgcac ttttgcttag ttttgtaact tatggcatag
     1921 gttttattgc aagacctatt ggggctttgt tttttggtca tttaggtgat aaacacggaa
     1981 gaaaaaatgt tatgatggct acaatagctt taatgggaat ttcaactact ctgataggtt
     2041 ttatcccaag ttatgcagtg attggtgttt gggcgcctat ttgtttggtt gcattgcgtt
     2101 ttatgcaggg ttttggcgca ggagctgaac tttcaggtgg aacagttatg ctaggagaat
     2161 atgctcctag caagagaaga gggcttgttt cttctgtgat tgctttagga tcaaatagtg
     2221 gaactttgct tgcgtctttt gtatggcttt tgatggtaca aatggatgaa gcaagtttta
     2281 aagaatgggg ctggagagtt ccttttatgg gaagtatttt aatcgctctt tttgctgtat
     2341 atattcgttt tcatgtcaaa gaaacccctg tttttgaaaa gcaaaaaaat gaaatgatga
     2401 aattgcgtct taataacgaa aagcatatga aaaaagatga aagaagtttt tggcaaagaa
     2461 gtcgtgcttt ttggactatg gtgggcttaa gaataggcga aaatggacct tcttatcttg
     2521 cgcaaggttt tatgtaggtt atgtgactaa aattttactt ttagacaaat cagtagctac
     2581 tacagcggta atgatagctt cattggtagg gtttttagtt attcctttgg cgggttattt
     2641 aagtgataaa tttggaagat gtattactta tagaatgttt tgtttgcttt taatgattta
     2701 tgcttttcct gcttttatgc ttttagatag taaaaatgaa attattgtga ttttaactat
     2761 tattgtaggt atgtctttag catctttagg gatttttggt gtgcaagcgg cttggggtgt
     2821 ggagcttttt ggggtaaaaa accgttatac aaaaatggct tttgctaagg agctaggttc
     2881 tattctttca ggaggaacag cgcctatggt ggcttctgct ttgcttgcat attatggcgc
     2941 ttggtggcct atcgcgacat attttgtatt aactgcaggt ataggttttg cgactacatt
     3001 ttttgcgcca gaaactagag gtagagattt aaataaaata gaagatgcga tatgagactt
     3061 atcttagaca cggacatagg caatgctatt gcaggagcaa atactgatga tggtttagca
     3121 cttgctttga ttttgtcatc taaagaaatc aaagcttgaa atgctaagca cagtttgcgg
     3181 taatgttcca agccttgttg cctatagtgt ggctaaggat ttatttaaac gtttaaattt
     3241 aaatatcccc gtttatttgg gagcgaatga agccctaaaa gaaccaagta aagcttggcg
     3301 tcaaagactt gatgaaagtg ttaaaaattt taaacttgaa tatctttggg aaaatataaa
     3361 aagtcctgaa attttagaaa atataaatcc tgatgcgatt tttaaaatgg gtgagttggt
     3421 gagtaaaaat cctaaagaaa tttctatttg tgcgatagga cctttgacaa atatcgctat
     3481 gactatgaaa atttttaaag attttgatat aaatcttaaa gagcttttta ttatgggcgg
     3541 cagttttgat atgccttatt acactaaaga tacaaatttt ggttttgatc ctgaggcggc
     3601 tagtatagtg ctaaattcaa gagctaaaat tacactcata ccttataatg caaccatgca
     3661 gactttatta acacacgagg atttaaaaga gttgcaaggt aagaatattt tatgtgattt
     3721 tatcgttgaa actttaggtg tttggattga ttatgcctct aaaacacgtg gtacaaaggg
     3781 aacttggata catgatgctt taacgatagc ttacgcatta gattctagta ttgcagattt
     3841 tgatgagtgt tatgctgatg ttatttgcga tagttctttg gcaagaggta tgagttggcg
     3901 ttgttttaaa gaaccaaaaa tgagtatggg ggtggattta agcactaaaa attgtgttaa
     3961 aattctaaaa aatgtagaca atgcaaagct tttaaaactt ataaaagaga ggtttttaaa
     4021 aggagtttgc tatgaaaatt atgaaagcat aacgacttaa ttttccaagt aagataaaaa
     4081 atatagtttt taaaaaagaa tatttcgcaa aaccaagtcc caaggcaaaa agatctccta
     4141 ctaaaggtaa aaaagtaaaa aaagcaaata tacttccaaa tttagcaaaa ttagcattga
     4201 aattttctaa tttttttaag gatttgctaa agtatttttc taaaattttt tcttttccaa
     4261 aatacgctaa agcataagta cttaaacttc ctaaggtatt acccaaagtg gctacgataa
     4321 gtaccaaatt cggagtaaaa tcaagtttta taaagcctaa aacaaaggct tcacttgcta
     4381 agggtaatag tgtgcttgaa agaaaacaca ccatgaaaag ccccaaatag ctaatatcat
     4441 tatataaaaa atcaaacata aaattatgat ttttgtgtat ttttaagctc taagtctaga
     4501 taatatcctg tgtaagaacg ggtttttttg tgttctttag cgactttttc cacgcttcct
     4561 gtgcttataa cttttccacc tttaactccg ccttcaggcc ccatatcgat gatataatca
     4621 gcatttttaa tcacatctaa attatgttct atcacaaaaa cagaattttt aagatcaact
     4681 aaatgttgta aaactaagat gagtttattg acatcttcaa aatgcagtcc tgttgtaggt
     4741 tcatcaagta tataaagcgt ttttcctgta tcgctacggc ttagttcttt agcaagtttg
     4801 attctttgtg cttcacctcc acttaaggtg gtggcatttt gtcctagagt tagataatct
     4861 aaacccactt ttactagagt atctaatttt tgtttgattt taggaacggc tgtaaaaaat
     4921 tcactcgctt ctaaaacact catatttaaa atttcactga tatttttgcc tttatatttg
     4981 atttctagcg tggcatcatt gtagcgtttg ccctcgcaag tatcacaaac taccataaca
     5041 tcaggtaaaa aatgcatttc tattttgatt tctccatctc cgctacattt ctcacatctt
     5101 ccacccttga cattaaaaga aaagcgtcca gctttataac cacgcatttt ggcttcttta
     5161 gtggcggcaa aaagatttct gatttcatcc atagcacctg tataggtggc aggatttgaa
     5221 cgtggtgtgc gcccaattgg gctttgatca agataaatga ctttatcaag tttttcaagt
     5281 ccttctattt gtactccgcc aagtttttta acttttttcg cacggtttaa ttcctcttgt
     5341 gcaaaaggaa gtagggtttg aagtatcaaa gagctttttc cagaacctga aactcctgtt
     5401 atagcgacta aattttgcaa aggaaatttt acgcttaaat cttggatatt gttaatattt
     5461 acatttttaa gctcaagcca ttctttctgt gttctgtttt gaagttgtga aatttgtttt
     5521 ttaccattca tataaagtgc agtttcgctt ttgcttttta aaagttcttt ataagttcca
     5581 ctaaatacaa cctcaccccc aaattttcct gcttttggac caatatctac aataaaatct
     5641 gcttcttcta tggtcatttt atcatgctct acgacaatta gggtattgcc cttttgttgt
     5701 aaatttctta aagttttaat cagttttgca gtatctcttt catgaagtcc tatgctaggc
     5761 tcatctaaga catacatcac tccgcttaaa ccactgccaa tttgtgaagc tatgcggatt
     5821 ctttgtgctt cacccccact aatcgttctt gcatcgcgcc ctaaagaaag ataacctagc
     5881 cccacatcat acaagaaaaa caatctttcg ttgatttctt ttaggatagg tttagaaata
     5941 agtttttgtt gctcgcttaa ataagaaaaa tttttctcat ctgcaaaaaa agccgtacta
     6001 tcttctatgc tcatatctaa aatttcaccc aagctttttt tggctacttt cacggctaaa
     6061 ctttcgggtt ttaaacgatg cccaccgcag tctttacaaa ttttttcact catatattca
     6121 gctaaatctt tttcatcttt tagcatttca taagccattt taaccacgcc ttcaaaagtg
     6181 cgttttaggc gatttctttt ccaaagaaat tctatagttt tggcattacc atacaataca
     6241 agacgttttt gttcttcgtt taattgcata aaaggtattt tgataggaat ttcattttgt
     6301 tcgcaaaagg cgattaggaa tttataataa taacttttat taaaaccata catgatttta
     6361 acagcaccgt tttc
//
LOCUS       DARGED010000095         6352 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.095, whole genome shotgun sequence.
ACCESSION   DARGED010000095 DARGED010000000
VERSION     DARGED010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.095"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..844
                     /gene="tssG"
                     /locus_tag="SFZ84_001381"
     CDS             <1..844
                     /gene="tssG"
                     /locus_tag="SFZ84_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEG8203489.1"
                     /translation="KNIFLRTNKSLKHPNKDIEKIIFSEHEQSVIELFINFMGLHGVS
                     SQLPSFMLDKLSRNEDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSIS
                     KILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIERVLQVNFKLKDKLSIIENLPHQ
                     ILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTKHD
                     DLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIVYM
                     KLCE"
     gene            995..2410
                     /locus_tag="SFZ84_001382"
                     /pseudo
     CDS             995..2410
                     /locus_tag="SFZ84_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3709..4653
                     /locus_tag="SFZ84_001383"
     CDS             3709..4653
                     /locus_tag="SFZ84_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8203490.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDDNDLVKLKDILKDYPVK
                     ISCYELNIKDEDGDFPLFDPFNLIIRAAHACEENNNDFSILDYLFDEYGLSLKDPKYN
                     FAFHDMKHIKEANDKYILMKEVEDDPCIYQNALIYDYILSADNPNSQIIKYLVNRGAK
                     FEVHDEDTNWTPMHFWARRNNYELLELAIKGGANVDMQTFSKLRKCNNETLLFEAVSE
                     PETYRVTQLLIELGANVNFATPTTPLDDAKGSRNKKLLKDAGAMTSEQIRKKFNLPAY
                     DSSHCEIDGKTDMDLLGKYHDEYSKLLNDAIKKAKESE"
     gene            4646..>6352
                     /locus_tag="SFZ84_001384"
     CDS             4646..>6352
                     /locus_tag="SFZ84_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203491.1"
                     /translation="MNEGIEIDFTKVNFHIKEFQKVYILENCKLCFYSPFHLQTQNGK
                     EVKKIEKKGKSKIYLIDEDGKTVDIDKTSEQNKIKAREETRKKEEKSKNVLFSNDEKG
                     NDAINAYFGEKNIDTLNKAYEEREAKPLSRNTESFKDYDVFYDVYTSKDNKDNSVNKK
                     LGCGDGFEVNNGIAEVGAEFFDKCFEKGIYVLIPRLVSLDKNEELHFDPVPLEDKGFV
                     VTDFRKGKKGEKNIDLSFQRSIAKIKNPNLTLQSPKEFLQALNDNRDFTEDDKKEQAQ
                     AIKKACGKKADEITKILLKDDKSLKDIITDEKELKKKISDLQNNQNKSPKELSLLGRL
                     EFLQRNQKKAEKHKDIIKVLQNPQQASNDKQNDRTKSRTKNKQKQTTTPNQEEQKNKN
                     INSKDIGDAGEYAASMLFTKRSTRYLSNRRKIDANFNTHSFNHTIPDFLVTLNDYPTL
                     VEVKNVQDQALTEQISFELKLAREYELDYLFLCNHYTKLIDNITNLEIFNKDNKNHKG
                     SRSGFIYHRHAHRSIKTIFKEMYLHHIKGAAPNKIIIKRLNLNNSANIEEELNKNKQI
                     QKN"
BASE COUNT         2700 a          834 c          887 g         1931 t
ORIGIN      
        1 aaagaatata tttttaagaa caaataaaag tttaaaacat ccaaataaag atatagaaaa
       61 aatcattttt tcagaacacg aacaatcagt tatagaattg tttataaatt tcatggggct
      121 acatggagtc tcttcacaac ttccttcatt tatgctagat aaactgtcaa gaaatgaaga
      181 tggcgaccaa ggttggactc tattctttga tttctttaat cattatttgc tttggatatt
      241 ttttgatgta ataagcttaa aaaattatcc acgatctttt aatgaaaatt ttaaagattc
      301 tatttcaaaa attttattta gcatgttggg aattaaagaa tacgatattg caaaaaaata
      361 tttaccattt gcacctttac tactaagttt aagacgacct aaaacacaca ttgaaagagt
      421 tttacaagtc aattttaaac ttaaggataa attatcaatt attgaaaatt taccccatca
      481 aattttaatt tcaaattcgc aaaaaaataa cttaggaata aagaacaata ttttaggaaa
      541 taattttata ttgggcgata aatttatctc ttatcaaaac aaaatagcga tctatataaa
      601 ggatatttca tatcaagaag cggttaaatt tatgcccaat ggaaccaaac acgatgattt
      661 aaaaaatagc ataatgtttt taacaaataa tgaattttgt gttgatttat atcttaaaat
      721 caactattct tcagaaatga agtttgtgtt aggagaagaa aatactgcca aacttggttg
      781 ggcaaaaatt ttaggtaata cgcaaaaaaa atatacaata gtatatatga aactatgtga
      841 ataagctaac acaaaaatat gtttaaaaaa atcacaacct ctcttcaccc ataaaccata
      901 ccctaaaata aactttattt tacccacttt atgctaaaat aaatcacata agcttatagg
      961 ctattaatca tcaacaaccc caaaaggatc atcaatgtcc cttaattctt acatgagtct
     1021 taatatatca aattctactt caaatcccct accctttaaa atcactaaag ccctcatcaa
     1081 agaaagtctt gaagagcttt tttctataga atgtgaaggc ttttttgaaa gtttagaaca
     1141 agatttattt tctttaaata ctttaaccaa tgcttcatct catccaagca cccctacaac
     1201 ttttaatttt catcctaatg ttttaatcga tcaagaagct attttaagta tccataatcc
     1261 ttatgagaat aataccttaa actttgataa caatgaagta aaaaactata agggaattat
     1321 cacttatata aaatatctag gtattaatca tgaaagtgct ttaaatatta atgatagcac
     1381 ttcaaatact aagcaaatac aatacaagca ttttttttct tttaagcttc aatcagtctt
     1441 gataagactt tctttaaata aagccaatcg tatttatact catactaata ttatagaagt
     1501 gattaaacaa acccttggtt tttatcaaga tatcttacat aaagaaattg attattctaa
     1561 tatacatttt aattatgaag aacaagaact catctctcaa tacaatgaaa gtgatttaga
     1621 ctttattaca agattaagcc ataataatgg aatctttttt tatgaagatg agaacactat
     1681 ttatttttgt gatgtgtata aaaatgtaaa aaataaagaa attgagtata atcctaatat
     1741 taataatatt ttaaatcaag cttgtatttc ttctatttat aaagaacaaa gcttaagaac
     1801 taattctttt acacattcta gtattaatgc caatactcct ttaaatcttt tatctttaca
     1861 ctctagtaaa gttccttatg aacaagaact taataacaaa gcttgttata atgaacattt
     1921 ttatgagagt gaatattctt ttacaaaaag cattgattta aagactaagc cttctcttaa
     1981 agaaaaaaga gccttagtat taaatgaaag cttactagca aaaagtaata tttatcatct
     2041 tagcttagga gattttatca ctttaaatta taaggagttt aatcatcaag aagaaataaa
     2101 aaatcaagat gaagaaaaac aagataaagc ttctttgctt aaagacttta ttattatcgc
     2161 taatactcaa atcttaattg atgatgccat cttagctaat tctattaata ctaatgatca
     2221 tttaaattta aaagatttaa atttaaataa atcttattct aatactttaa ctttactaaa
     2281 aaagaatatt atttttactc caagttttaa agctaaacct aaagctccta atagcactca
     2341 aggtattgtt ataggagaga gtaaggatat agaaagtgag agaaatacta tttatactga
     2401 tgagcatgga agggttaagg taaggattaa tctttatgcc aatcaagaag aattagataa
     2461 tgatactttt attgcaaatg atatagatat aaattcttct aatttatcaa gcaatactta
     2521 taaatcttat catcacactc cttttttaag agtagcttct catatagcaa gtaatcattc
     2581 aggttttttt catactccaa gaataggaga tgaagtgatt atttcttttt tagatgatga
     2641 tatagataaa ccttatgtaa gtggaagttt gtataatggg gctacaacaa tgccccaata
     2701 taattatcca agatacaaaa gagaaatcgc tacaaatgca ttgagttatt taagcgtagt
     2761 tcctgctatg attgataaag gtttagatac attaaaactt caagaaaata ctgattatga
     2821 attaagttct ataaacaatc attatcttac tttggctaat tccacagtag gagtggataa
     2881 caccaatgca agagcaagga atgaaattac cctaaaaaac gacaaagaca aagaagaaat
     2941 ttatatccta gcacaaaaag attataaaga agaaataggt aataattatg agcaaaccat
     3001 aaaaaataat aaaacttcag aagtgggagc cttatatacc gaatttatta ctttaggaca
     3061 tatgcaaaat atcataggtt ttaaaaatgt caatgtagga gctgaatatt tagaaaatac
     3121 cctactttct aaagatacta atgtgggctt aagtaatact ttaaatgtag gaatcagcaa
     3181 tgaagtcaat atcggacaaa accacgaaga aaagatagga aacgacaaaa gagtaataat
     3241 caataacaat ctagagcaag atatcaaaaa tgattttatc caaagaatag gacataacaa
     3301 aaatgaaacc ataaaaggtt cttatgtgct tcaaaccaat caaagtataa aattttattc
     3361 caaacaagat ctaagcatag aaacaaatga gtatttcaaa gctgaagctg atgattctat
     3421 tagttttaaa gccaagaaaa attgctcttt tacagctgat aatgtaaata ctatggcaaa
     3481 tcaagaaagt gttttaacag cacaaaaaca aatcgtttct agggtaggaa atacaactat
     3541 tacacaaaca aaagataaaa ttatactaca agtaggaaca acacaagtga ttatagatag
     3601 caaaggttta agagtaaaag gaggtgattt aagagcggat taaaagcaat tttcttaaaa
     3661 ttaaaactaa aatcataaaa aacccaattt acaaagaaag gaaaaacaat gaaaacctta
     3721 gaagatatca aagctatgag ctatcaagaa aaagatgaat tagaagattt agttcttgaa
     3781 attatagatg ataatgattt agttaagtta aaagatattt taaaggatta tcctgtaaaa
     3841 atatcttgtt atgagcttaa tattaaagat gaggatggag actttccttt atttgatcct
     3901 tttaatctaa taataagagc tgcacatgct tgtgaagaaa ataataatga tttttctatt
     3961 ttagactatt tatttgatga gtatggatta agtttaaaag atcctaaata taactttgct
     4021 tttcatgata tgaaacacat caaagaagct aatgataaat atattttaat gaaagaagta
     4081 gaagatgatc cttgtattta tcaaaacgct ctaatctatg attatatatt aagtgctgat
     4141 aatccaaatt ctcaaatcat taagtatcta gtcaatcgtg gggctaaatt tgaagtgcat
     4201 gatgaagata caaattggac ccctatgcat ttttgggcta gacgcaataa ttatgaatta
     4261 ttagaattag ccattaaagg aggagctaat gtagatatgc aaacttttag taaattaaga
     4321 aaatgcaaca atgaaaccct tttatttgaa gctgtaagcg aacctgaaac ctatagggtt
     4381 acacagcttt taattgaact aggagctaat gtgaattttg ctaccccaac caccccttta
     4441 gatgatgcaa aaggatctag aaataaaaag cttttaaaag atgcaggagc aatgacttca
     4501 gaacaaatca gaaagaaatt taatttacca gcatatgatt cttctcattg cgaaattgat
     4561 ggaaaaactg atatggattt attaggtaaa tatcatgatg aatattccaa acttttaaac
     4621 gatgctataa aaaaggctaa agaaagtgaa tgagggaata gaaattgact ttactaaagt
     4681 caattttcat atcaaagaat tccaaaaagt ttatatatta gaaaattgta aattatgttt
     4741 ttacagtcct tttcatttgc aaacacaaaa tggaaaagaa gtgaaaaaaa tagaaaaaaa
     4801 aggcaaatct aaaatttatc ttatagatga ggatggaaaa actgtagata ttgataaaac
     4861 ttcagagcaa aacaaaataa aagcaagaga agaaacaaga aaaaaagaag aaaaaagtaa
     4921 aaatgtatta tttagcaatg atgaaaaggg aaatgatgca atcaatgctt attttggtga
     4981 gaagaatatt gatacgctaa ataaagccta tgaagaaaga gaagccaagc ctttatcaag
     5041 aaatacagaa agttttaaag actatgatgt attttatgat gtttatacaa gtaaagataa
     5101 caaagataac agtgtaaata aaaaactagg atgcggtgat ggctttgaag taaataatgg
     5161 catagctgaa gttggagcag aattttttga taaatgcttt gaaaaaggaa tttatgtttt
     5221 aataccaaga ttagtatctt tagataaaaa cgaagaatta cactttgatc ctgtgccttt
     5281 agaagataag ggctttgtag tgactgattt tagaaaaggg aaaaagggag aaaaaaatat
     5341 agatttaagc tttcaaagaa gcatagctaa aataaaaaat cctaatttaa ctttacaaag
     5401 ccctaaagaa ttcctacaag ctttaaacga caatagagat tttacagaag atgataaaaa
     5461 agagcaagca caagctatta aaaaagcttg tggaaaaaaa gcagatgaaa taaccaaaat
     5521 cttgcttaaa gatgataaaa gtttaaaaga tattatcaca gatgaaaaag aattaaagaa
     5581 gaaaataagt gacttacaaa ataatcaaaa caaatcacct aaagaactaa gcctactagg
     5641 caggcttgaa tttttacaaa gaaatcaaaa aaaagctgaa aaacataaag acattataaa
     5701 agttcttcaa aaccctcaac aagctagcaa tgataagcaa aacgatagga caaagagtag
     5761 aacaaaaaac aaacaaaaac aaaccaccac tccaaaccaa gaagaacaaa aaaataaaaa
     5821 tatcaattca aaagatatag gagatgcagg tgaatatgct gcttctatgc tttttactaa
     5881 aagatcaact aggtatttat ccaatagaag aaaaatagat gctaatttta atacccatag
     5941 ttttaatcat accatacctg attttttagt aacgctaaat gattacccta ccttagtaga
     6001 ggttaaaaat gtccaagatc aagctttaac agaacaaata agctttgagt taaaactggc
     6061 tagagaatat gagcttgatt atttattttt atgcaatcat tacacaaaat taatagataa
     6121 tataactaat ctagagatat ttaataaaga caataaaaac cataaaggat caagaagtgg
     6181 ttttatctac cacagacatg ctcacagaag cataaaaaca atatttaaag aaatgtatct
     6241 acatcacata aaaggagcag cacctaataa aattatcata aaaagattaa atttaaataa
     6301 ttctgctaat atagaagaag aattaaacaa aaacaaacaa atacaaaaaa at
//
LOCUS       DARGED010000096         6182 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.096, whole genome shotgun sequence.
ACCESSION   DARGED010000096 DARGED010000000
VERSION     DARGED010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6182
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.096"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..476
                     /locus_tag="SFZ84_001385"
     CDS             <1..476
                     /locus_tag="SFZ84_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8203492.1"
                     /translation="IIVKLNKVDPIRNKTFEEAREEVLPMYLSEQAGKNLEEKAKNSL
                     VNFKGDDIGFVSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDSKAIL
                     YKINKQKLDMNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            473..1861
                     /gene="ftsA"
                     /locus_tag="SFZ84_001386"
     CDS             473..1861
                     /gene="ftsA"
                     /locus_tag="SFZ84_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG8203493.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDAESEIKFDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            1877..2989
                     /gene="ftsZ"
                     /locus_tag="SFZ84_001387"
     CDS             1877..2989
                     /gene="ftsZ"
                     /locus_tag="SFZ84_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG8203494.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            3145..3957
                     /locus_tag="SFZ84_001388"
     CDS             3145..3957
                     /locus_tag="SFZ84_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG8203495.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLAKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            3987..4778
                     /gene="flgG"
                     /locus_tag="SFZ84_001389"
     CDS             3987..4778
                     /gene="flgG"
                     /locus_tag="SFZ84_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG8203496.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVRFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(4845..>6182)
                     /gene="glnA"
                     /locus_tag="SFZ84_001390"
     CDS             complement(4845..>6182)
                     /gene="glnA"
                     /locus_tag="SFZ84_001390"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG8203497.1"
                     /translation="GTWHHITYNLHAINEETFQTGIPFDGSSIHGWQPIEKSDMILKP
                     DAQSAFLDPFTADPTIIVFCDVYDIYKGQMYEKCPRSIAKKAMEHLKNSGIADTAYFG
                     PENEFFVFDSVKIVDTTHCSKYEVDTEEGEWNDDREFTDSYNTGHRPRNKGGYFPVQP
                     IDSLVDIRSEMVQTLEKVGLKTFVHHHEVAQGQAEIGVNFGTLVEAADNVQIYKYVVK
                     MVAHLNGKTATFMPKPLYGDNGNGMHVHMSLWKDGGNLFYDKDGYSGLSQTAINYIGG
                     ILKNARSVAAFTNPSSNSYKRIVPGFEAPCILTYSCQNRSASCRVPYGIGKNSARIEI
                     RFPDSTANPYLAFVSLLMAGLDGIKNKTIPVGPMDENLFDLTLDEIREKGIEQLPHTL
                     RGSLEALIRHNSYLKPVMSDIFIDDYQHLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2150 a          868 c         1188 g         1976 t
ORIGIN      
        1 atatcatagt gaaactaaat aaagtagatc ctataagaaa taaaactttt gaagaagcta
       61 gagaagaagt tttacctatg tatttaagcg aacaagctgg aaaaaattta gaagaaaaag
      121 ctaaaaatag tttggtaaat tttaaaggcg atgatatagg ctttgtaagt cgagatagtt
      181 ctcgcgagag tgtaaagctt agtgataaga tattaaatga ttctgaattt gcttattttt
      241 taatgaatgt atttaatact gatcaaaata gttcttatgt gatcattaat gacagtaaag
      301 caatattata taaaataaat aaacaaaaat tagatatgaa ctccgataaa tttgaacaat
      361 acaaaactat gcttgagcaa aatttgcaaa atttaaaagc aaatgagctt aagcaagaac
      421 ttgttgatga acttaaaaag atatatccga taaaaattta ttataaaggg aattgatttt
      481 gaatatatta ggaattgact taggctcaac ccagacttgt gccattattg ctcaaaaaga
      541 tgaagatgga ttaaaaatta ttggtttttc caagtcgaaa accaacgggg ttaaaaaagg
      601 tgccattacc aatatagagc ttgcttctaa atctattgaa gaagctgtta gaagtgctga
      661 gatgatgagt ggagttcatt atgataaggt tgtggtgtct atatcaggtg cttatactaa
      721 aagcgttgat agcataggtg ttgttaatat tccaaatcat gaaataggca ttaaagaaat
      781 tcatcgtgct gtaagtacag ctaagcatac tgccaatcta ccaagtggtt atgaaattat
      841 ccatgttttg ccttataatt ttaaggttaa tgatcttgaa catgttgatg atcctttggg
      901 aatgagtggc aatcgtttgg aagtttcaac ccatatagtg atttcacaag aatctcatat
      961 taaaaatctt aagaaagcag ttgaattagc tgatttaaga gtggataata tagttctttc
     1021 aggatatgct tcagctatag cttgtttaga tgatagtgaa aaggaattag gtgctgtttt
     1081 gattgatatg ggtggagcga tttgtgatat ggttgttcat actggaaatt caattagata
     1141 taatgactgt ttgcaaattg gctcgattaa tattacccaa gatttatcaa tggcattgca
     1201 tacaccttta aaagaagcag aaaaaatcaa gcttaattat gcagctcttt cgcaacagcc
     1261 taataccctt atacaaattc cttcaatggg tgatgaaaga aaggttaatg aagtttcttt
     1321 ggatattatt tcaaacgtaa tttatgcaag agcagaagaa actttgatga ttttggcaaa
     1381 aatcttaagt gataatcgtt atgccaatgc tataggcggt ggagttgttt taacaggtgg
     1441 aatgactaag ttagcaggta ttgatgagct agctcctgca acatttgata atcgctcagt
     1501 tagactagct actgcaagaa aagatttgat tactggtttt agtgaaattt ttaatgatcc
     1561 tgaaaatact tgtgctatag gactttgttt atatggagcg gggtatttta cgccttatga
     1621 acttgattct aatgaaaaat taagatataa aggggaaatt gaaaatttta atcgtcaaat
     1681 taaacaagat attgttttgc aaaaagatgc agaaagtgaa ataaaatttg atttttttga
     1741 tgaaaatttg caagaaaatg atacaattgc aatacaagaa caattagatt ttaaagagcc
     1801 aaaagaaaaa aaacctagcg ttttttcaaa tatctggcat aaaattatga atcaatttta
     1861 acaaggagaa atttttatga gtgaattttt agtagaagaa atgcaacata ataaaggtgc
     1921 aaaaattaag gttataggct gcggtggcgg tggcggtaat atgatcaacc atatggttaa
     1981 aatgggatta aatgatcttg atttaattgc agcaaatact gatgcacaag ctatttcaat
     2041 ttcattagca aaaactaaaa ttcaacttgg cgagaaaaaa actaaaggtt taggcgctgg
     2101 tatgcttcct gaagtaggtg cagaaagtgc tagagaaagt tttgaagaaa taaaagcaag
     2161 tcttagtcaa agtgatattg tatttattgc ttcaggtttt ggtggaggta ctggaacggg
     2221 tgccactcca gttattgcac aagcagctaa agagattgga gctttaactg tttctgttgt
     2281 aactatgcct tttgcattcg aaggaaaaca aagaaaaaaa cttgctgaaa gcggtctcct
     2341 tgagcttaaa aaagaaagtg attctattct tgtaattcaa aatgaaaaat tattgagcat
     2401 tattgataaa aaagcaggca ttaaagatgc ttttagattg gttgatgata ttttagctcg
     2461 tgctgtaaaa ggtatggtgt ctatcttgct tgataatgga gatattaatg ttgactttgc
     2521 ggatgtaaga accatcatga gtcatcgcgg actcgcgctt atgggtgttg gtagtgctag
     2581 tggtgaaaat gctatagaag aggctctttc aaacgctata gaatctcctt tgcttgatgg
     2641 aatggatatt aaaggtgcta agggagttat tttgcatttt aaaacaagtt ctaattgctc
     2701 tttgtttgaa atttcggcag cagcaaatag tatacaagaa attgttgatg aaaatgctaa
     2761 gattattttt ggttctacca cagatgatag catggaagat agagttgaag taactattat
     2821 tgcgacaggg tttgaagata aagatacagt agctaaaaaa tctaccgaag aagctcaagc
     2881 ttctaagaaa aatccttatt taagtcttaa aaaggtaagc ggtggttacg atgaagagat
     2941 aatggcgcaa attgaaacac caactttctt gcgtcgtcaa atggattaaa attgattttt
     3001 aaagcaagat tgggtcaaat cttgcttttt atagtttaaa attctctcct aataatcttt
     3061 caaatattta tttttctttg tttttaaaag ttggaacact ctttgctttt atagctataa
     3121 aatcttaatt ttataggtga aaatatgcaa aatggatatt atcaagcaac tggcggaatg
     3181 gtaactcagt ttaataaact tgatgtgatt actaataatc ttgccaatat taatacaagt
     3241 ggatacaaaa gagatgatgt ggttattgca gattttaaaa ggatttttaa agaaactcag
     3301 gatgagttgc ctatagaaaa tcacacaaga gatgcatctc gttttgtaaa tactacaata
     3361 gatggaatcc cacaagtttc tcaagaatat acggatttta gcctaggttc tttaaaggcc
     3421 acaaacaatc ctttggattt ggcaatgact agagaagatg ctttttattt ggttcaaacc
     3481 aaagatggag aagtaagatt agccaaagat ggaaattttc aacttgatga tgagggttat
     3541 ttggtaaata agcaaggata caaggtatta agtagtgatt attttaataa tcctcagaat
     3601 gctggcatac gcattcctaa tggtgctgtt caaattagcg ttgataaaaa cggaagcatt
     3661 gaagttgatg gagctcaaaa tgcaagatta tttgtagcac aagtagatga tataagagct
     3721 ttgcaaaaag atggggataa tgtctataaa atagatgatc taacccgtat tagagatttg
     3781 aaaaactcca atgctattcg ccaaggtttt tctcagggat caaatgttaa tccagttact
     3841 gaaatggtag gactgattga agcaaacaga atggtagaaa tgtatcaaaa agttatgaca
     3901 gctcatatgg atgacttaaa tcaagaagct atcaataagc ttgcagctgt taaataattt
     3961 aaaataaaat aaaaaaagga ttaaaaatga tgagatcact tcatactgct gctacgggaa
     4021 tggtagcgca gcaaacacaa attgatgtta cttcaaataa catcgccaat gttaatacag
     4081 caggttttaa gaaaagtcgc gcagaatttg ctgatcttat gtatcaagtt atgaagtatg
     4141 caggaacttc aacttcagct actactcttt ctccttcggg tatagaagtg ggtgtgggtg
     4201 tgcgtccaac agcggtaact aaagttttta ctgaaggaaa tttaaaatca acaagtactg
     4261 atggtcttga tatggctatt gcaggtaatg ggttttttca aatacaactt cctgatggca
     4321 ctataggata tactagaaat gggcaattta caaaagataa tgaaggtaat attgtaaatt
     4381 cagatggtta tagactttta cctgaaatga caatacctga aggcgcaaca gcaattaatg
     4441 ttgctacaga tggaaccgtt tctgtaatgc taccagggga gcaacaagaa actcaaattg
     4501 gccaagtgga gctagttcgg tttataaatc cagcgggtct tcattctatg ggtgataatc
     4561 tttatcttga aacaggagca agtggtgcac ctgttgcggg tatagcagga caagatgggc
     4621 ttggaacaat aagacatgga tttatagaac ttagtaatgt tcagcttgtt gaagaaatga
     4681 cagatcttat cacaggacaa agagcttatg aagcgggttc taaggccatt acaacaagtg
     4741 atgatatgct aggaattgta aatcagctta agcgatagtt gatataaaat aaataatttt
     4801 taattctttt ttgtttaatg gcgtgttaaa cgccattaaa ttttttagca agagtagcaa
     4861 gttttaaatt cataagcagt tggacgagct tctactggcc aaacttgtgt ttcaaatttt
     4921 aaatgctgat agtcatcgat aaaaatatcg ctcattacag gttttaaata agaattatgt
     4981 cggattaaag cttccaaact tcctcttaga gtatgtggta attgctctat ccctttttca
     5041 cgtatttcat ccaaagtaag atcaaataaa ttttcatcca taggacccac aggaatggtt
     5101 ttatttttga ttccatcaag acctgccatt aaaagactaa caaaagctaa ataaggatta
     5161 gcagtgctat cagggaagcg aatttctata cgagctgaat ttttacctat gccataagga
     5221 acgcgacaac ttgctgatct gttttgacaa gaataagtta aaatacaagg agcttcaaag
     5281 ccaggaacta ttcttttgta agagttggaa cttggatttg taaaagctgc aacacttcta
     5341 gcatttttta aaattccacc tatataattt atagcagttt gactaagtcc actgtatcca
     5401 tctttatcgt aaaataaatt tcctccatct ttccataagc tcatatgaac atgcatacca
     5461 ttgccattat ctccgtataa aggttttggc ataaaagtgg cagttttgcc atttaaatga
     5521 gctaccattt ttacaacata tttataaatt tgaacattgt cagctgcttc tacaagcgtg
     5581 ccaaaattta ctcctatttc agcttgtcct tgtgcaactt catgatgatg aacaaaagtt
     5641 ttaagaccta ctttttcaag ggtttgaacc atttcagaac gaatatctac taaagaatca
     5701 attggctgaa ctggaaaata tccacctttg tttcttggcc tgtgtccagt attgtagcta
     5761 tcggtaaatt ctctatcatc attccactct ccttcttcgg tatcaacttc atacttagaa
     5821 caatgagtag tatcaactat ttttacacta tcaaaaacaa agaattcatt ttctggtcca
     5881 aagtaagcag tatcagctat gccactattt ttaaggtgtt ccattgcttt ttttgctatg
     5941 cttcttggac atttttcata catttgtcct ttgtaaatat catacacatc acaaaatact
     6001 atgatagtag gatcagccgt aaaaggatct aaaaaagcac tttgagcatc aggttttaaa
     6061 atcatatctg atttttctat aggttgccat ccatgaattg agcttccatc aaatggaatg
     6121 ccagtttgaa atgtttcttc attgattgca tgaagattat aggtaatatg atgccaagtt
     6181 cc
//
LOCUS       DARGED010000097         6147 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.097, whole genome shotgun sequence.
ACCESSION   DARGED010000097 DARGED010000000
VERSION     DARGED010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6147
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.097"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..416
                     /locus_tag="SFZ84_001391"
     CDS             <1..416
                     /locus_tag="SFZ84_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203498.1"
                     /translation="SGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVP
                     SVEKIPTPSVPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDL
                     IANPPQIFKENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(413..922)
                     /gene="lolA"
                     /locus_tag="SFZ84_001392"
     CDS             complement(413..922)
                     /gene="lolA"
                     /locus_tag="SFZ84_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG8203499.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            1022..3610
                     /gene="secA"
                     /locus_tag="SFZ84_001393"
     CDS             1022..3610
                     /gene="secA"
                     /locus_tag="SFZ84_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG8203500.1"
                     /translation="MFLNTLKAVFGTKNDREIKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3607..4812
                     /locus_tag="SFZ84_001394"
     CDS             3607..4812
                     /locus_tag="SFZ84_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8203501.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4835..5620
                     /locus_tag="SFZ84_001395"
     CDS             4835..5620
                     /locus_tag="SFZ84_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8203502.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5682..5757
                     /locus_tag="SFZ84_001396"
     tRNA            5682..5757
                     /locus_tag="SFZ84_001396"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5715..5717,aa:Lys,seq:ttt)
     gene            5765..5840
                     /locus_tag="SFZ84_001397"
     tRNA            5765..5840
                     /locus_tag="SFZ84_001397"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5798..5800,aa:Val,seq:tac)
     gene            5892..5968
                     /locus_tag="SFZ84_001398"
     tRNA            5892..5968
                     /locus_tag="SFZ84_001398"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5926..5928,aa:Asp,seq:gtc)
     gene            5973..6048
                     /locus_tag="SFZ84_001399"
     tRNA            5973..6048
                     /locus_tag="SFZ84_001399"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6006..6008,aa:Lys,seq:ttt)
     gene            6068..6143
                     /locus_tag="SFZ84_001400"
     tRNA            6068..6143
                     /locus_tag="SFZ84_001400"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6101..6103,aa:Arg,seq:tct)
BASE COUNT         2083 a          802 c         1175 g         2087 t
ORIGIN      
        1 taagtggagt ggaaaaattt gatttagagg agtttaaacg ctttttagaa agtactgagg
       61 ctaaagagaa gggtatgggt agcgaggtaa aaaaagcact tgaaaactta gaagttccta
      121 aaactcaagt tcctagtgtt gaaaagatcc caactcctag tgttccaaat ttagaagtca
      181 agcaagttga acagcttttc aaagatccag atgaagaaaa taaaaatgac aatggagaaa
      241 tcaatataga taatttaaat acacctaaaa tgactccaga tatagaagaa aaaattaaaa
      301 gagatttaat cgccaatcct ccacaaatat tcaaagaaaa taacgcaagc aagccttatc
      361 atttgccaca aacaggctat gatataaagc ttgatgagaa ttcaacgcaa aattagcgaa
      421 ctatatcata attttgcgga atttttgcct tgaaaatatc ggagttgatt tttggatttt
      481 taatttgatt gtttagattg attataacat cattttcaaa ttcatcttta taggatatgc
      541 tttgaatttg ctcttgatta agcttaattg tatagtttat attatcatat tttgctgcaa
      601 gtttatcctt atctataaga cttgcttttt tgaaaatttc attaagattt ggaatgttat
      661 caagatgaga gaaaatgact tgttctagat cgtgctctac tatggttact tgatttttgt
      721 tgatataaat ctctttttta ctaggagtat cataactcca atatgcttga tctttgctca
      781 gtataaaatg cccagaataa gaaagtgtag agtttttgga tttcactatt tgggtaaaat
      841 tgcttgaaaa ggtattaaaa ttaagatcaa gggcaaaaag ttgtcctata aaaataaaaa
      901 atatcaagaa tgtttttttc atttattttc cttaaaaaaa tatatttttt atgtcattct
      961 agctaatttt aattaaataa tcgttataat gatagtttga aaaatttata aaggtttaaa
     1021 aatgttttta aatactttaa aagccgtgtt tggcacaaaa aatgatcgtg aaattaagaa
     1081 atatttcaag cgtgtagcac aaatcaatgc tttagaaggc aactatcaaa atttaagcga
     1141 tgatgaatta aaagccgaat ttgcaaaatt taaagagcaa attttaagcg gagaaaaaaa
     1201 cgaaaatgat gttttaaatg atgtttttgc tatagtcaga gagacaggta agagaacttt
     1261 aaatatgcgt cattttgatg tgcagttaat cggtggtatg gttttgcacg atggaaaaat
     1321 cgcagaaatg aaaacaggag aaggtaaaac tcttgtagca accttacctg ttgttttaaa
     1381 tgccatgagt ggcaaaggcg tacatgtcgt tacagtaaat gattatctag ccaaaagaga
     1441 tgctgagcaa atgagtgcga tttataattt tttaggtttt agtgttggcg tggtgctttc
     1501 ttctcaaaat agtgatatag aacacaagca agcttatgat tgtgatatta cttatggaac
     1561 caataatgag tttggttttg attatttgcg tgataatatg aaattttcaa aagctgaaaa
     1621 agttcaaaga gagcataatt ttgttatcgt agatgaagta gatagtattt taattgatga
     1681 ggcaagaact ccgcttatca tcagtggtcc tacaaatcgt actttagatg gttatattaa
     1741 agccaatgaa gtagctaaac aaatgcaaaa aggtgaagca gttttacccc ctgcaaaacc
     1801 tgagggtgat tttgtagtag atgagaaaaa tcgtaatatt ttaattacag aagcaggtat
     1861 tgctaaggct gaaaaacttt ttggcgtaga aaatttgtac agtcttgata atgctatctt
     1921 agctcatcag cttgatcaag ccttaaaagc acataatctt tttgaaaaag atgtgcatta
     1981 tgttttaaga aataatgaag ttatcatcgt tgacgaattt acagggcgtt taagcgaagg
     2041 acgtcgtttt agcgaaggat tgcatcaagc tttagaagct aaagaaaatg taaaaattca
     2101 agaagaaagc caaactctag cagatattac ttttcaaaat tattttagaa tgtacaataa
     2161 acttgcaggt atgacaggaa ctgcacaaac agaagcgact gaattttctc aaatttatag
     2221 tttagatgtt atttctatac cgacaaatat tcctattaaa agacaagata aagatgatct
     2281 tatctataaa actcaaaatg aaaaattcaa agctgtaatt gaagagatta aaaaagccaa
     2341 tgctaaaggt cagcctgtac ttgtaggaac cgcaagtata gagcgcagtg aagtttttca
     2401 caatatgctt gtaaaagaga aaatccctca tcatgtttta aatgctaaaa atcacgagca
     2461 agaagctttg attatccaag atgcaggtaa aaaaggtgct gtaactatcg ctacaaatat
     2521 ggcaggtcgt ggtgtagata taaaaatcga tgatgagatt agggctttgg gtgggcttta
     2581 tatcatcggt acagaaagac atgaaagccg ccgtattgat aatcaacttc gtggtcgtgc
     2641 aggaaggcag ggtgatcctg gaataagtcg tttttatcta agtttagaag ataatctttt
     2701 aagaattttt ggtggggatc gtattaaaag tattatggat cgcttgggca tagaagaggg
     2761 cgaaagcata gaatcaagaa tcgttacaag agcggttgaa aatgcgcaaa aaaaagttga
     2821 aagcttgcat tttgaaagca gaaagcattt gttagaatac gatgatgtag caaatgaaca
     2881 aagaaaaact atttatcgtt atcgtaatga gcttttagat gaaaactatg atattagagc
     2941 taaaatttct caaaatatcg ctgaatatag cgcaaatgta atgaatgatt atatgcttga
     3001 cgaaagcggt tctaatgtaa attttgaaaa tttgaaagca aaaattttgt atgaatgttc
     3061 aactcagatt agtgaaaaag attttgagaa tttaagcgtc attgaaatgc aagacaagct
     3121 aagtcaaatt cttgaaaatt cttataatga aaagatgtta agacttgaga ttaaagaatt
     3181 gcgtaatata gagcgtattt tatatttgca agttttggat aatgcttgga gagagcattt
     3241 gtatcaaatg gatattttaa aaacaggaat aggacttcgt ggatacaatc aaaaagatcc
     3301 tcttgtggaa tataagaaag aaagttataa tcttttcttg gagttggtca atcgtattaa
     3361 atttgatagt attaaactac tttttagcgt gcaatttaat caagaagagg cgcaaaattt
     3421 agaaaataaa gccaatgaag aaaatgaaaa gctacttcaa agctcagtag aaatgggcgc
     3481 aagcgaagat aatcttggcg aagctgaatt taaaaaagtt ccacgcaatg ctccttgtcc
     3541 ttgcggaagt ggaaaaaaat ttaaagaatg ccatggaaaa agtggtccta agcaaggaat
     3601 tttagcttga ataaaagcgt tttaaaatat ttacttttta agtatttaag atttgataaa
     3661 gagcaaccct ttatcaatct ttctatgctt ttggcctttt taggagtttg tgtaggactt
     3721 tgcgttttgc ttgtagctat ggcaattatg aatggttttg ataaagaatt tgaaaaacgc
     3781 ttttttgtga tgaattatcc tattactatt ttgcctaaat tctacgctcc tgtaaatgat
     3841 gaatttatag atgagttaag aaaaacattt ccaaatttgt tatttagccc ttatttaagc
     3901 actcaagttg ttgtaaaggg agataatcgt tttgaaggtg gtgtgctttt tggcgttaat
     3961 tttaatgatg aaaaaaaaat aaacgaagtg gttgctaaag ctttaaagga tgagaattta
     4021 agtggttttg atatacttgt aggatcagca cttactgatg aatttggttt gcataaaaat
     4081 gacaaacttt cacttatttt ttcaaatctt aatcctagtg gattttcttt agtaccgcaa
     4141 actaaacgtt ttgatgttaa agcgcgtttt acttcagggc ttgcatttta tgataaagct
     4201 tatatgtaca cagatgttga tgcattgaaa aaagtacttg gaatacctaa aaatccaaat
     4261 tatgatggaa ttcatgtata tagcgataat gcttttaagg atgttgaaaa aattaaatct
     4321 tatttaaaag atgattatgc tgtggtgggt tggtgggagc aaaataaaaa ttttttttca
     4381 gccttagaac ttgaaaaaag agcgcttttt atagtgttga tgcttattat tttggttgca
     4441 agtttaaata tagtaagttc tttattgatg atagtaatga atcgtcgcag tgaaatagca
     4501 cttttacttg ctctaggtgc aagcaaaaat gaggtaaaaa agagtttttt tgccttaggt
     4561 atgcttattg gtggtggtgg tatgatagtg ggtgtggtac ttgcattttt tgctttatgg
     4621 cttttgggaa attttgatat tgtaacttta cctgttgatg tttatggaac cagtaaatta
     4681 ccacttgatt tatctttaat ggatttttct ttaaccattg tgggtgcttt aataatcata
     4741 gctttatcat ctttttatcc tgcaaaaaaa gcaactcaaa ttaatatttt agatacttta
     4801 agaaatgaat aaattgtaat tttggagatt tttattgtct ttgtttactc aaaaaaataa
     4861 gaattttaaa cctttaaaac ctctatcaaa gtcaaaaata atcactaatt taattctttt
     4921 gattttattt ttaatattgt tttgttattg tagttttagt ataagtgctt atcattttga
     4981 ttttagcgca attgcaacct ataaagaaaa atttcttcaa ggttttttaa atactttaat
     5041 aatcagtttt ttttctttat tgttgagtat aattttgggt ggagtttttt gtgctttttc
     5101 tttaagttcg attgtttttt taagattttt atctacattt tacatagagc ttgtcagagg
     5161 aaccccttta ctagtgcagg tattattgat atattatatc attgcaaata atttaggact
     5221 tgataatcga tatgtggccg gagttattat tttatcatgt ttttctgctg cttacttagc
     5281 tgaaatattt agagctggaa ttttaagtat ttctatatct cagcttgaga gcgctagggc
     5341 tttagggtta aaagagatgc aggtttttgc gtatgtaatt tttccccaag ctttaaaaaa
     5401 tattttagca ccgctgagtg gacaatttgc aaatttaatt aaagatagtt ccttattaag
     5461 cgttattgct gtaaatgaat taacccaaag tgcgcaagag ataaattctt atacttttgc
     5521 tactcttgaa gcttatgtaa ttttggctat tacatatctt gttttgactt tacctataag
     5581 tatattttct cgttatttgg agagaaaatg ccaaaaatga tttaaaaaag cttgacaaat
     5641 agagctaatt ttggcataat cacattttta tttcagaaaa tgtctcgtta gctcagccgg
     5701 tagagcatct cccttttaag gagggggccg ttggttcgaa tccaacacgg gacaccatta
     5761 taaaggtcgc ttagctcagt tggtagagcg ccacccttac aaggtggatg tcataagttc
     5821 gagtcttata gtgaccacca ttttataaaa tcataaatag gttttataat ctctacttct
     5881 ttactttgga tgcagcggta gttcagctgg ttagaatgcc gccctgtcac ggcggaggtc
     5941 gcgggttcga gccccgtccg ctgcgccata ttgtctcgtt agctcagccg gtagagcatc
     6001 tcccttttaa ggagggggcc gttggttcga atccaacacg ggacaccatt tttattgtta
     6061 gggttatgac cctttcgtct agtggcccag gacaacactc tctctgtgtg gaaacagagg
     6121 ttcaaatcct ctaggggtcg ccaatca
//
LOCUS       DARGED010000098         5824 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.098, whole genome shotgun sequence.
ACCESSION   DARGED010000098 DARGED010000000
VERSION     DARGED010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5824
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.098"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..573)
                     /locus_tag="SFZ84_001401"
     CDS             complement(<1..573)
                     /locus_tag="SFZ84_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8203503.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHL"
     gene            647..1387
                     /locus_tag="SFZ84_001402"
     CDS             647..1387
                     /locus_tag="SFZ84_001402"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG8203504.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            1391..2317
                     /locus_tag="SFZ84_001403"
     CDS             1391..2317
                     /locus_tag="SFZ84_001403"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG8203505.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFDFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LATAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            2314..3726
                     /locus_tag="SFZ84_001404"
     CDS             2314..3726
                     /locus_tag="SFZ84_001404"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG8203506.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNKIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKSIKKEILDWMQK"
     gene            3723..4442
                     /gene="kdsB"
                     /locus_tag="SFZ84_001405"
     CDS             3723..4442
                     /gene="kdsB"
                     /locus_tag="SFZ84_001405"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG8203507.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYEKALKIYLEK"
     gene            4529..>5824
                     /locus_tag="SFZ84_001406"
     CDS             4529..>5824
                     /locus_tag="SFZ84_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203508.1"
                     /translation="MSIFSINDNSNYNSILSQSKANKESKENSKISFANAFLKQNASK
                     LNEIQNANSQTLARSEVLNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADISTSTNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIERKAENNSYTS
                     DIKKYLGIDKYYTNIDMAETIKQYYNQFNQIINYVFNDTNRTSFTEADINSMPKGISE
                     LSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHINIGLQPLNFTPQSMQTQ
                     NLDKDTAIDTFNPNMSVYPQNEDGSYSKEALFMSFLKSYGSGQPVESPKTTLNPKVEA
                     YNRAMAKESFNGDSIALNDIMTGKVDFASLLKGYAQDGWLDADIYAMEKGVAWQNTSI
                     GYGGAWFDREFNQVKANGWKASNQSIDSYVNSIMDRLNNL"
BASE COUNT         2161 a          713 c         1016 g         1934 t
ORIGIN      
        1 tagatggact tgctcttctt ttaaagtagt ttcttgtcca tgtcctggta aaagtttaaa
       61 atcttctttg taagtcataa ctttttctaa gctttgtttc attaaatttg catctgaata
      121 aggaaaatcc catcttccta tgcttctata aaataaaaaa tctccactaa acatgatatt
      181 tttacctaca atttctatca tagtgcaacc tggtgtatgt cctggtaaaa agtgaaattt
      241 aaagtcaagt ccgcctatag aaatgatatt ttcatcatca atcaaataat ccgctttgct
      301 aggcataaaa ccttgattaa aaggatcttc aagcataaaa gtatcatttt tatgaatata
      361 aatggggatt tgataggctt gttttacttt ttcattatcc caaacatgat cgtaatgtcc
      421 gtgagtgttt aaaatcgcta aaggattttt tacatgtttt ttgataaaat ttagcgcatc
      481 aaaaccagga tcaattataa tttctccatg ctcaccaaat aaaatataac aatttgtctc
      541 ataagctcca caagcttgtt tgataatttg cattttttgc ctctttaata aaaaatttgc
      601 cttaaataaa tataattata cattaaattt ttaaaaggca agctttatgg attggcaaaa
      661 gattacggaa aaaatgtgtg attttataca agaaaaagtg aaaaattctc aaagtcaagg
      721 tgtggttttg gggcttagtg gcgggattga ttctgctttg gtagcaacgc tttgtaaaag
      781 agctttaaaa gagaatgttt ttgctctttt aatgccaact caaatttcaa acaaagccaa
      841 tcttgaagat gctttaaggc tttgtgcgga tttaaatctt gaatataaaa tcatagaaat
      901 tcaaagcatt ttagatgctt ttataaagca aagtgaaaat accactctag tatctttggg
      961 aaattttgca gcgcgtatta gaatgagttt gctttatgat tattctgctt tgaaaaattc
     1021 tttagtcata ggcacttcta ataaaagcga attgctttta ggttatggta cgatttatgg
     1081 ggatttagct tgtgctttta atcctatagg atcgctttat aaaagtgaaa tttatgcctt
     1141 agcaaaatac cttaacttgc atgaaaattt catcaaaaaa gctccaagtg cggatctttg
     1201 ggaaaatcaa agtgatgagg cggatttagg tttttcttat gcaaaaatcg atgaaggttt
     1261 aaaagcttta gaaactaatg atgaaaaact tttaagaacg cttgatcctt ctttgattgc
     1321 tatgttaaaa aatcgcatgc aaaaaaatgc ttttaaggga aaaatgcctg aaattttgga
     1381 aatttaaaca atgaatgaag aaaaaaatta tgaactttgg cttgataatt atttttttaa
     1441 gcccaatttt tggcaaaaat gccttgcttt tatactttta cctttaagtg tgctttatgc
     1501 tttttttgcg attttaaata ctttttttcg taaaaaaata gtttttaaaa agcctgttat
     1561 tagcgttggt aatttaagtt ttggaggtaa tggaaaaacc ccgctttgta aagctatagc
     1621 aagggaattt gatggcgttt ttatagtact taggggctat aaaagaaagt ctaaaggttt
     1681 gtttgttgtt aaaaatcaaa atgaaatttt atgcacctta gcacaaagtg gcgatgaagc
     1741 tatggagtat gcttttgaag aaaatatcaa aggtgtgatt gtgagtgaag atagagtaaa
     1801 aggtattgaa aaagcctttg aattgggagc taaaatcgtt gtactcgatg atgctttttc
     1861 taaatttcat attaaaaaat ttgatatttt gcttgaaagc aaaatcaaac cttattttga
     1921 ttttacttta ccaagtggag cttatcgttt gccaaaattt tatgaaaaaa gggctgattt
     1981 tattgcatta gaaggcaggg attttgtgcg ttattctttt gtaaaagaaa atccaaaggc
     2041 tgttttggca actgctattg ctaaaccttt tagattgtat gagcatttta tcaaagcaag
     2101 ggcttgttat ttttttaaag atcattatga gtttaaaaaa gaagaattag aaaatttgct
     2161 aaaaaaacat aattgcgata cactaatgct tacttttaag gattttgtta aagttaaaga
     2221 ttttggtttt aaatgtcaaa ttatagaatt aaatatagaa ttaaaagatt cattaagaga
     2281 aaaaataaaa acttatatca aggagtttga gcaatgaaat tagtcgagag tagaaatgta
     2341 aataatgtat caagttttaa ggaagctttg attaacccaa acgccccaga aggagggctt
     2401 tactcgcctt taaatttgcc tatttttgaa ggagaaaaat atgccaattt gtcttataaa
     2461 gattttgctt taaagcttat agaaagtttt ggttttggcg aagaagagct ttttaaaaag
     2521 gctttgaaaa gttacgaaag ctttgatgat aaaaatacac ctatttcttt gcaaaaaatc
     2581 tctgaaaaaa cctatattaa cgagctttgg catgggccta caagagcttt taaagatatg
     2641 gctttacagc cttttggcgt gcttttaagc gaattttcaa aggataaaaa tattttaatt
     2701 atttgtgcta cgagcggcga tacaggacct gcaaccctaa aaagctttga aaatgcaaaa
     2761 aatgttaaag tagcttgtat gtatccaaaa ggtggcacaa gtggagttca agagttgcaa
     2821 atgcgagctt tagataagga taatttgaaa gtttttgcta tagatgagga ttttgacgca
     2881 gcgcaacgca ctttaaaaga attgcttttt tcaaaagatt ttcaaaacaa aattaaagct
     2941 ttaaattatg agctttgcgc agcgaattct gtaaattttg ggcgtatttt atttcagatt
     3001 atttatcatt attatgcgag tttaaaactt tttaatgagt ttttagaaga agtacaaatc
     3061 attgttccaa gtggaaattt tggcaatgct ttaggagctt tttatgctaa aaaaatggga
     3121 gctaaaattt caaaaatcaa aatcgcttca aatgtgaata atattttgag tgaatttttt
     3181 aatcatggcg tttatgattt gcgtgaaaaa agtcttaaga agactatttc tccagctatg
     3241 gatatactta tttcatctaa tatcgaaaga cttttgtttg cgaaatttaa agataaaaga
     3301 accaaagaac tgatgaattt gttgaaaaat gagagatatt ttaaacttga aaaagaagaa
     3361 ttgcaaagtt tacaagaaga ttttgaggcg gatttttgca ccgatgaaga atgtatgcaa
     3421 tttatcaaac aaagcaagat tttaatcgat ccgcacaccg caacttgttt taaaatgctt
     3481 gatcctttaa aacctagcat tattacctct acagcagaat ggacaaaatt tactccaagt
     3541 atgataaaag ctttatacga tagggattct aagaatgaaa aagaagattt aaaatttata
     3601 gctaaagagt ttaatgtcca agttaaagat gaaattttgg ctttatttga cttgaaaaat
     3661 agcgatgaaa aggtatttga agccaaaagt ataaaaaaag aaattttaga ttggatgcaa
     3721 aaatgattat tattcctgca agattaaaat caagtcgttt tcatgagaaa attttatgtg
     3781 atgtaggtgg agtgcctatg tttgtggcta ctgcaagaag ggtaagtagt gtggatgaag
     3841 tttgtatagc tttagatgat gaaaaggttt taagtatcgc taaagaatat ggtttaaatg
     3901 cagttttaac aagcaaaaat catgaaagcg gtacggatag gattaatgaa gcttgtaaga
     3961 aactatcttt aaaagatgat gagattatta tcaatgtcca agctgatgag ccttttatag
     4021 aatgtgaaaa tttattaaaa tttaaagaat ttgcaagttc ttgcttggat aaaaaagctt
     4081 ttatggcgag ttgttataaa aaaatcactc aagaagaagc tatggattct aatttggtta
     4141 aagtgctttg cgataaagaa ggatatgctt tgtatttttc aagagctaaa atcccttatg
     4201 aaagagaaaa ttacgaggaa agttttaaag ggcatttagg catttatgct tatagtgtaa
     4261 aagctttaag agagttttgt tctttattaa gttctgcact tgaaagagcg gaaaaattag
     4321 agcaattaag agctatagaa aatggtaaaa aaatcaaaat gcttgaaatt tcaacaacaa
     4381 gcatggggat tgataccaaa gaagactatg aaaaggcttt aaaaatttat ttagaaaaat
     4441 aactccaccc caaaatggaa cagatcttgc ttatattatt ttaatatatt tagattgaag
     4501 gcaaaaaaat ctaaatcaag gaattaatat gagtatcttt agcatcaatg ataactcaaa
     4561 ttataattct atactttcac aaagtaaagc taataaagaa agtaaagaaa attctaaaat
     4621 aagttttgct aatgcttttt taaaacaaaa tgctagtaag ttaaatgaaa ttcaaaatgc
     4681 aaattcacaa actctagcaa gaagtgaagt attaaattct actaatacaa caaatactag
     4741 caataatact aattttagta taagtagtaa gacaagttct cctaattatg atatatctag
     4801 tgaatttaaa aactctattt atactctaaa atataaacaa gcagatataa gcacttctac
     4861 caatacagcc tatggttata gtgtagataa agatggttat atgggaagtg attttaacaa
     4921 agctgcggga cttcctgaag attttaagat acataaatct actttggatg agatagagag
     4981 gaaagctgaa aataactctt atacttcaga tataaaaaaa tatttaggta tagataaata
     5041 ttatacaaac atagatatgg ctgaaaccat aaaacaatat tataatcaat ttaatcaaat
     5101 tattaattat gtttttaatg ataccaatag aacaagtttc actgaagcag atataaattc
     5161 tatgcctaag ggaattagtg aattatcatc tgataaaact ataggtatta tgccgaaaaa
     5221 ttatgacaag ctaacaataa caaactatta taatacacaa gagcaatata atgaagcaga
     5281 acaattagga atgtttggac atattaatat aggcttacaa ccattaaatt tcactccgca
     5341 aagtatgcaa actcaaaatt tagataaaga cactgcaata gatactttta atcctaatat
     5401 gtcagtttat ccacaaaatg aagatggaag ctattctaaa gaagctttat ttatgagttt
     5461 tttaaaatca tatggtagcg gacaacctgt tgagagtcca aaaaccacac ttaatccaaa
     5521 agtagaagct tacaataggg ctatggctaa agaaagtttt aatggtgata gcattgcttt
     5581 aaatgacatt atgacaggca aagttgattt tgcaagtttg ttaaaaggtt atgcacaaga
     5641 tggctggctt gatgcagata tatatgcaat ggaaaaagga gttgcttggc aaaatacaag
     5701 cataggttat ggtggagctt ggtttgatag agaatttaat caagtaaaag ctaatggttg
     5761 gaaagcaagt aaccaaagta tagactctta tgttaattct ataatggata gacttaataa
     5821 tctt
//
LOCUS       DARGED010000099         5771 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.099, whole genome shotgun sequence.
ACCESSION   DARGED010000099 DARGED010000000
VERSION     DARGED010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.099"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1714
                     /locus_tag="SFZ84_001407"
     CDS             <1..1714
                     /locus_tag="SFZ84_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8203509.1"
                     /translation="WEKISEKELILFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQ
                     AVKLVANKNLTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNL
                     MSFCNQHKNTPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVD
                     ENEVVLKHAKFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYAEYIALK
                     KGYVVQDGEKFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGI
                     ECEELNVVGSVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLL
                     EGGTIKAKEVRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKI
                     KTLDKNYDEEFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPV
                     QYEKALKDFSLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTD
                     MNEIKFSLLEPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLS
                     ASKE"
     gene            1690..2241
                     /gene="ruvA"
                     /locus_tag="SFZ84_001408"
     CDS             1690..2241
                     /gene="ruvA"
                     /locus_tag="SFZ84_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG8203510.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCTSGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            2251..3291
                     /locus_tag="SFZ84_001409"
     CDS             2251..3291
                     /locus_tag="SFZ84_001409"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG8203511.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIQQGGFFSKGFLKENKLECECVINLIHGGDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLN
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            3351..3566
                     /locus_tag="SFZ84_001410"
     CDS             3351..3566
                     /locus_tag="SFZ84_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG8203512.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLNMKEFERLQNAMQLLENIYKNQKA"
     gene            3568..4287
                     /locus_tag="SFZ84_001411"
     CDS             3568..4287
                     /locus_tag="SFZ84_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8203513.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLTLPQILILHGWGANKELMKQS
                     FYPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKNVVDEDFGEIFAKQKAKSLVFWGKSDEATPLYCGEKMHQLLKNSTFYPL
                     EGDHFFFLKYSAFIAQKIKEI"
     gene            4288..5715
                     /locus_tag="SFZ84_001412"
     CDS             4288..5715
                     /locus_tag="SFZ84_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEG8203514.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINNNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
BASE COUNT         2252 a          790 c          892 g         1837 t
ORIGIN      
        1 atgggaaaaa atctctgaaa aagaattaat tctttttgat aaagatgaaa tttttttaaa
       61 aaatgatctt caaatcaagc aagaatacaa aatagaaatt ttccacggta taaaccaaag
      121 caaagcatct caagcagtca aactagttgc aaataaaaat ttaaccaaaa tagttgctca
      181 aattgatttt acaaatttag actttcatga aaaactagca ctagaacttt tgcaaaatat
      241 ttataaaaag atgttgaaac ttaaattttt aataggtatc cgcatttttg attttaagaa
      301 aaatttaatg tctttttgca accaacataa aaacacccct ttaaataaaa ctatacaaat
      361 caccgttgca caaggtattg atcctataga aagtcaagat gagtccctga tcttgactta
      421 taaagaaaaa accaaaaact acactatcga tgaaaaacgc tcaggtatta ttgttgttga
      481 tgaaaatgaa gttgttttaa aacacgccaa atttaaacaa ggtaaagaag gaaaagactt
      541 aaatttgcac accttaaaag ttttagccgc aaatgaaaat aaagttaaat tttcttgttc
      601 ttcagctttt aaacaagtag agcaagatgg atacgcagaa tatatagcct taaaaaaagg
      661 ttatgtagta caagatggtg aaaaatttga tattgcaaat gaactagatt ttaatggggt
      721 agattttaaa aatataggga ttataagagc tggactagac aaaaatgtca aaatcaatat
      781 aaaatttctt tcagaagtaa aagatgctgt aaattctggc gttgggatag aatgtgaaga
      841 attaaatgta gtcggaagcg taggaagcaa cactcaactt aatgccacca aaatgaaaat
      901 tgaaggcact acacactcta aagccaaaat tcaagccaaa caagcctata taaaaactca
      961 tagaggattt gcagaagccg aaattttaaa tatagatttg ctcgaaggtg gaacaatcaa
     1021 agccaaagaa gtgagaatta aaaaaagttt aggcggaaat atacaagctg ataaaatcta
     1081 tatagaaaat ttagaaagta ataattcttg tgtgtttttt gaaaacacca caatagaacg
     1141 cattaacggg gataacaata aatttcatgc taaaattaaa actcttgata aaaattatga
     1201 tgaagaattt gcgattttag gagagcaaat ttctaagtta aatcataaaa taaataaaat
     1261 aagacaatac attttatcaa gcaaaaatgg aattttaagc gttgaaaaaa agataacaga
     1321 acttaaaaat caaggtcaaa atgttcctgt acaatacgaa aaagccctaa aagatttctc
     1381 tttacaaaat cttgaattaa ataaactaca aaatgaagaa aaagaacttc ttgaacgcaa
     1441 aaaatcttta caattagaat taatcaattt gcaaaaaatg ctttttgaag caacttttat
     1501 aaataaaagc ggcaaatgga ctgatatgaa tgaaatcaaa ttttcacttc tagagcctaa
     1561 agaagatatt ttttactctt catttgttaa tgaaagtgct aaatttatag gcattaaaaa
     1621 agtcatacaa aacaaccaag aaagtataga aatacataaa aaattagatt atgaagaaaa
     1681 ggatatagca tggttgtcgg catcgaagga ataatcacaa aaaaagaacc tacttttatc
     1741 attgttaaat gcactagtgg tttaagctat gggatattta tttcgctttt ttgttctgct
     1801 aaaattcaaa ctcaagaaaa gcatgagttt tttatcactc aaatcatcaa agaagattct
     1861 aataaatttt atggcttttt ggataaagat gaacaaaaaa tgtttgaaat gcttttaaaa
     1921 gtcaatggag tgggtgcaaa tactgctatg gcggtatgct ctagtcttga tgtaaattct
     1981 ttttacaaag cgttaagttt gggcgatgaa agcgtgctta aaaaagtacc tggcataggt
     2041 ccaaaaagtg caaaacgcat tatagtagaa ctttctgaca caaaaaccaa acttgaaaat
     2101 gtaagcgatg ataaaagcga agccttagcc gcacttctta ctctaggctt taaacaagaa
     2161 aaaatcataa gtgttttagc aagtgctcaa gcaacaggca caagcgaact catcaaagaa
     2221 gctcttaaaa aactaggata aaggaataaa atgaaatttg caatactttt tggcggaaat
     2281 tcttatgaac atgagatcag tatagtaagc gctgtagtac ttaaaaaagt tattaatcaa
     2341 aatttagaat ttattttttg tgatgaagaa agaagatttt atcatatccc aagtgaaaaa
     2401 atgaattcta aaacttttag cactaaagct tataaaaaag aaaaagaact tttcatacaa
     2461 caaggaggtt tttttagtaa aggtttttta aaagaaaata aactagagtg cgagtgcgtg
     2521 atcaatctta tccatggtgg agatggagaa gatggaaaaa tcgcggcttt atttgagttt
     2581 tattctatta aatttatagg acctagactt gaagctagcg tattatcttt taacaaggaa
     2641 cttactaaac tttatgcaaa aagcgttgga gtaaaaactc ttgattatac catgctaaga
     2701 aaaaatcaaa actctaaaga aaagcttaat tttccttgca ttatcaaacc tgcaagactt
     2761 ggaagtagta taggcattag catagtaaaa gatgaaaaag atttagaata tgccaaagat
     2821 gtaggttttg aatttgataa tgatcttgta gtggaagaat ttaaaaacaa tatcaaagaa
     2881 tacaatcttg caggatgtat gatcaatgat gagtttgttt tttccatcat agaagagcca
     2941 aagaaaaaag aatttttaga ctttgaacaa aaatatctta gtttttcagg acacaatgag
     3001 cttatagaag caaatttaag cgaagaatta aaagaaaaac tcaaagacag ttttaaaaag
     3061 atctacaatc ctttgtttaa aggtgcttta atacgctgcg atttttttat actggataat
     3121 gaaatatatt taaatgaaat caacccaaac cctggttctt tggctaatta tctttttaaa
     3181 gattttagta ccactttaaa cgctttagct gatcaaattt cacttgaaaa aatgataaaa
     3241 atcagctaca acttccttca ctccatcaac ggacaaaaag gaaaattata agcttttaag
     3301 tcaaaatacg ctaaattata cataaaattt agcgtatttt aggaagaaaa atgctctctt
     3361 ttaaacaaga tgaaatttac actgccactg aggtggtaag aaattttagc cccattatgg
     3421 aaaaacttaa aaaaagtgaa agtggaaaaa tagttatttt aaaaaataac aaatttgaag
     3481 ctgtaatgct taatatgaaa gaatttgaac gcttacaaaa cgccatgcaa cttttagaaa
     3541 atatctacaa aaatcaaaag gcttaaaatg gctcaaactc aactttctta taaaaacaaa
     3601 acttatcaaa tttcttatga aattttaggt gatcttacct taccgcaaat acttatctta
     3661 cacggctggg gagccaataa agaacttatg aagcaaagtt tttatccttt tttgaaagac
     3721 ttttgtcaaa tttatatgga tttggcgggt tttggaaatt caagtgtgga agaaatttta
     3781 aacactcaag attatgccaa tatcacagaa ctttttttaa aacaaaaaaa actcaatgtc
     3841 tgttttttca tggggcattc ttttggtgga aaagtaagca ccctactcgc aaaagaaaaa
     3901 gacaccctaa tcttactttc aagtgcagga attttagcta aaaaatccct aaaagtgcgt
     3961 tttaaaatcc gtatttttaa aattttaaaa ctctttggtt tgggaaaatt ttatcgctat
     4021 tttgctagta aagatggagc aaatcttagc cctatgatgt atgaaacctt taaaaatgtt
     4081 gttgatgagg attttggtga aatttttgcc aagcaaaagg ctaaaagctt ggttttttgg
     4141 ggaaaaagcg atgaagccac gcctttgtat tgtggtgaaa aaatgcatca acttttaaaa
     4201 aatagcactt tttatccttt agagggggat cattttttct ttttaaaata ttctgctttc
     4261 atagctcaaa aaattaagga aatttaaatg cttatcaata ctctttattt tatcaattct
     4321 ttatttttta atttttgtat agctttttat cttatgagtg ctttacaatg gtattcttat
     4381 aaatttaaac gcgtgttttt tcattatcat aaacctttat ggcatttgta ttttttattt
     4441 atcccttatt ttttattctt agcttttcct ttatactctt tggcatattt tgcattgatc
     4501 catactccga ttttgtattt ttggaataaa ggcatagata aaaagcttgt ttttacaagt
     4561 aaggttaaat ggttttttgt ttttgttttt gtttataatg ctatttttac catccttgct
     4621 ttgcgttttt cttttctttt taatcttttt agtcttcctt ttgctttatt gagtcttaaa
     4681 atttatgagt tttttacaaa tttatattat aaaaaacaag ccaaagccaa actaagagcc
     4741 aatgaaaatt taaaaatcat actcattacc gcaagttttg gaaaaacaag tattaaaaat
     4801 tttttatacg aacttttaaa agatgacttt aaaagctaca aaacaccacg atctgtcaat
     4861 accttgctag gtatagttgc tgatatcaat aacaatttaa gccaagatac tcaaatttac
     4921 atagctgaag caggtgctag acttaaaggc gatattgatg aaatcactcg ttttttacaa
     4981 cctcacatca gcatagtagg agagataggc aatgcacatt tagagtattt taaaagtgtt
     5041 gaaaatatcc gctcaaccaa acttgaagcc ttaaattcca aaagactaga aaaggctttt
     5101 ttacactcta gcacccaaaa agaagaagat aaactcatca gcctttatga tgataaatta
     5161 agtctcattc attcaagtct tgaaggttta gaatttaaag tcgatataga aaataaatcc
     5221 tatgatttta aaagtcaaat tttaggggat tttaatgcgc aaaatctttg tgtttgtata
     5281 ctttgtgctc attatcttgg cataaaacta gaaaaaattc aaaagcaagt tttaaatata
     5341 aattccgtag aacatcgctt gcaagtactt tcaagagagc ctaaatttat catagatgat
     5401 ggttttaatg gaaattttaa aggtatgagc acaagctata aactttgtaa aagctataaa
     5461 ggacgcaaag ttttagtaag tcctggtata gtagaagtaa gcgaagaaga aaatataaaa
     5521 cttgctaaaa tcatcaatga gtgttttgat cttgctatca ttagtgcaca aatcaatgct
     5581 gaaattttca aaaaagagtt aaaaataaaa accattatac ttaaagaaaa gagtcagcta
     5641 gttcaaactc tagctaaaga aacaaaacac ggagatttga tactcttttc aaacgatgca
     5701 cctagcttta tgtgatttgc ataagtattt gcaaatgtca tcatttttaa tttgacttcg
     5761 tgcaaatact t
//
LOCUS       DARGED010000100         5651 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.100, whole genome shotgun sequence.
ACCESSION   DARGED010000100 DARGED010000000
VERSION     DARGED010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5651
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.100"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..737
                     /locus_tag="SFZ84_001413"
     CDS             <1..737
                     /locus_tag="SFZ84_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8203515.1"
                     /translation="IKNMQLDKQHELIFEITNLANDLALKIQENNTQYKDDLKQILAK
                     LFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSDNIVKMSQELSIL
                     TKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRAEKTHDYICNC
                     SLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNAIFEDALQNHH
                     FTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            694..2565
                     /locus_tag="SFZ84_001414"
     CDS             694..2565
                     /locus_tag="SFZ84_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8203516.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHS
                     GYSVINNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2569..4206)
                     /locus_tag="SFZ84_001415"
     CDS             complement(2569..4206)
                     /locus_tag="SFZ84_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8203517.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSSAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4210..5094)
                     /locus_tag="SFZ84_001416"
     CDS             complement(4210..5094)
                     /locus_tag="SFZ84_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG8203518.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGNKEEKA"
     gene            complement(5148..>5651)
                     /locus_tag="SFZ84_001417"
     CDS             complement(5148..>5651)
                     /locus_tag="SFZ84_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8203519.1"
                     /translation="EQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKETLQY
                     FSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNANAMNLFIQ
                     NQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEKVNLE
                     LVLAKYF"
BASE COUNT         2043 a          962 c          759 g         1887 t
ORIGIN      
        1 gcattaaaaa tatgcaatta gacaaacaac acgaactaat ttttgaaatt accaatcttg
       61 caaatgattt agctctcaaa attcaagaaa acaatacaca gtataaagat gatctaaaac
      121 aaattcttgc aaaactattt caatacatca aaattcattt taaagatgaa gaaaaattta
      181 tggaaagcat tgattttcct ttgattgaag aacataaaaa atctcatcaa atattagtag
      241 aaaaaactaa agagctttta gagcattcag ataatattgt aaaaatgtct caagaacttt
      301 ccatattaac caaagattgg attttagatc attttgctaa tgaagattta tggatagcta
      361 attttacaaa aaaaacccta caccttcaag aaatccatta taccttggaa caatacataa
      421 aactaaaatc aatcaaacaa gacctaagag ctgaaaaaac tcatgattat atttgcaatt
      481 gttctttgcg tatccatgca gttccacaga ctatacatca agagcttgtt agcaaagaaa
      541 ataccttaaa gtgcgaaaaa tgtgggcaaa ttttagttca tttggattat tttgatttga
      601 atcaaaattt cgaaaaattc aatgctattt ttgaagatgc actacaaaat caccatttca
      661 cgactcaaaa aaatgatatg ggggggggga tagatgaatt ttcaagtaaa aaccttagaa
      721 actttcaatc cttttgaaag tttaaatcat gaacaagcaa acacagaaca aattcttgat
      781 tttagagtta tagattttaa acttctgtgt tctagtgtaa aaccagcaaa aacaaaaact
      841 tatgaaagaa aggattttga cttattttat gcagatgatt tttttgtaaa aaactacaat
      901 accatagtgc aaaaatttct tatagaaatt tacccaaaaa cccaaagttt tccttttaca
      961 gtcaaactta gatccaactc caacctaacc catctaaaag ccagtatcaa ccttacagaa
     1021 aattttaaat attaccctaa tttaaaattt gatattttgc aaaatatcta caaaataatg
     1081 atcaaacaaa aatttttaat cttaagactt gataaaaatt tatttgacaa gattgatgat
     1141 tttatcttat caatacaaaa aagtccatct attaaagaaa tagagcttga aattgccaaa
     1201 ggtgtagata agattgaaca taaaagtgat gaaattattt atcatagaga tgttaacgaa
     1261 gaatgttttg acgaaaatat taactatgat gaaggaaact actgtaaacc tattgaaaaa
     1321 aatgagctac tttttgaata catttataga attcttggaa aagaaggacg aaatttaaga
     1381 ggagaaatcc ttcatttaaa tccaatagcc tttcttgata atccttttat cataaaagat
     1441 gaaagcattt acacagaaga attagaagat agaattaaat attttagcgc caattatgga
     1501 tttttaaata aagaccactc aggatatagc gttataaaca atttaaaatt atcacaaata
     1561 gggcttaaaa caaccggttc aatcaaaaca aataccgatg aaaatataaa cttagaaatc
     1621 actaattttg atataagtga tgatgctatt aaatcaggta ttgtaaatgt tcaagcttca
     1681 aatataaaag taaatgggaa tgttggagca acaaaacttt atggaaaaaa tatcagtatc
     1741 aaaggcttaa ctcatgcaaa aagcgaaatt tttgcacaag atatttttat tacaacacac
     1801 aaaggaactt tgcaagctga cactgtatat ataaaaaatt tagaaaatgg gacaattata
     1861 gctaaaaatg tatttgttga aaactgcatg ggtggaaaaa tagaagcaga aaatatttat
     1921 atttgcaatt tactaacgga taatacttta tatccaagaa aaaatctaat cataacaaac
     1981 aatataaaat ttaaaaacaa tatcgtagtt tcaccactag tttctattga aaacaactca
     2041 gatacagaat gcgaaaatct taaaaatcta agccttaaaa taaaaagtaa gcttgatgac
     2101 accataagca aaatgcaaaa ttactatgat tatctaatca aaaatcaaat caaaatcatc
     2161 aaacttcaaa agactaaaaa tcctagcgcc atagaaatga aattttcaaa tctttatcac
     2221 gatatcataa aaaaatacaa tcatcttagc atttcgtata aaaaatttat aaaattaaaa
     2281 tatcaaattg atgcgaaatt aaatttctta aatgaaatgg tttacaatgt aaaaatatac
     2341 ataaaagccg aaaatatcgg agaggataat tttttaaaat tttatcctaa cacaaacacc
     2401 aaccttgaac taaaacatca tataaattta aaagactatg aaaaggtttt atatcttgaa
     2461 aaaggacagc aagtaagtta tattaaatca agccataatt atagcgaaag cgacatagaa
     2521 gaaattaaaa ttatttttga aaaattagaa aaagataatt cctaagaatt atcttttcat
     2581 attaatggct ttttgtatca tctgatcact tgtagtgata ctttttgagc ttgcatcaaa
     2641 ggctttttga gttacgataa ggtttgaaag ctctgcgctt aaatcaacat ttgattgttc
     2701 taagaatccg cctttaaatt tagctgtatt aacaacttga ccatctttca taataaaact
     2761 tgcatcaccg ctatttgccg ttgctgcaaa aatattatct cccatagcaa ctaatccttg
     2821 ctcattgata aaattatata aagcaagctt tccaactatg gcatttttac cattgctaaa
     2881 ttgcgcaaca atacttccat catcggatat attatattgt tcaaaaaacc cttcagctac
     2941 accatcttgt tgtgtaacta catttttttc gacgccttgt ttaatataaa tcccactata
     3001 acccgaacca ggcttgttag catcataagg agaacctaaa tcaatattaa ttgttccacc
     3061 atttggattt gcaatgcttg taatattgtt ttgaagcaaa gcaccatttt tatcaaaaac
     3121 catatttcct tcagtcggat tgcctacggc attgccatta gaatcataaa tttgtgcaat
     3181 agctttatat tgtatattat cgccttcttg cggtaaaact ctttcaagtg taacccttaa
     3241 agtgctttta cttccatctg cattataaat aggggattct aaaatatctt tattggcttt
     3301 ttgttgctct gttgaaattt gagctgtatc aagcttgatg ctattttcat ccaatccttt
     3361 taaatcaagc tcgttacttt taaaatttag attttcatct aaagtcgctt caaagcttgt
     3421 ttttacgcca ttatcatcag tgaaatttaa aataatccta tcacccgctt tagcactaaa
     3481 cacatcttct ttgctaacac taccactaac tacatatttt ccatcttcag tttttgtaat
     3541 gttaaattta ctaggatcaa gatctacttt aactacttct gttgttgtgt tagtatttaa
     3601 acttccactc cattttacat tttgagttac ttgaggaggt aaatacatat tcacaggtac
     3661 tttaatagcc ccttgagaag cggttgtgcc tatactgaaa gaattatttg aatttacagt
     3721 aaaaccatta tttaccggag ttcctgtgtt aagataatcc cccataagcc cagcaactct
     3781 atcgctatag ttaataccag taaaagcagg attcattgtt cctaaaacaa aatttccata
     3841 agaatctacc aaatatccat tggcatctct tctaaatgat ccatttctag tatagtaagc
     3901 attgccatca gcccctaaaa ccccaaaaaa tccttttcct tgcaaagcca catcaaattc
     3961 gccatcactt gcaacaggag aaccctgttc gaaaacaact tgagaagatg ctgcactgct
     4021 accataacca ccttgagcag ggttggttga ttgggttgtt atggtagtat aaaaaatatc
     4081 tttaaattga gcatcagagt atttaaagcc cgtggtattg acatttgcta tgttattagc
     4141 agtgatatca ataccaaagc tattgctttt tactccagaa atcccattat aaaatgaatt
     4201 catcatggct tatgcctttt cctctttgtt gccatcttct gtagatccag acccagaaga
     4261 atctccatcg cttgaaccac cacttgagtc tccacttgaa ccgcttcctc cagtagatga
     4321 agatgaacca agcttataat ctgttatttc ttgtattgca tcaaaaggaa cttcttgtcc
     4381 agccattttt gcataggcaa caccatcttt aaaaacaaca ccttcgatag gataagttcc
     4441 gtaatttgca gtgatttttt caccattttt attattataa accattttaa cagtgtactc
     4501 accatcacct gcataaaccc catcgttatt tcttcctggc cactccatag taaataaacc
     4561 ttgagaaata gatttagcat cgcttttttc actgaaaaca agtttattat tgctatcata
     4621 aatttctagc gtaacaccgt tttcatcaga atcttcaggc aaatacattt taagagcgat
     4681 aagctcatct gcacctgtaa gtttgatttt attatctgaa acagttgcca ttttaccaat
     4741 agcccctaaa gctgaagtac tcatacttgt actaaaagaa tcagaaagct tttgcatagt
     4801 ttcaaccatt ttttgcatag ttgtattggt attttgctgc atttcaagtg cactaagctg
     4861 tgaagtttga gtaagcattt tatcgctatc cataggatct gttggatctt gatgttgaag
     4921 ctctatcaaa agaagtttta aaaacgcatc cttatctaag gtagcatttg gattgctcac
     4981 tattcctgag ctactgcttg aatctgttct agttgttcca ctagtacttc ctgaagaagt
     5041 agtacctgaa gttgtagcag tggtatttaa attccaatcc gatgatgata tcattataaa
     5101 ctccttttta tttagttttt tattatttaa gcaataagtg ttccaattta aaaatacttc
     5161 gctaaaacaa gctctagatt gactttttca ctttcatttt ttccatctaa agcatcttta
     5221 aaaccatatc cactacgatt ttttccttga ttttgatttt gctctctttt accttgatca
     5281 ctaaaattca tttcaagtcc agtaaatccc atatttacaa gagaattttt aaactcggct
     5341 tgattttgga taaacaaatt cattgcattg gcattggagt tgaaattgat atgaaggtta
     5401 ttacctcttt gtatcaaagt tacctccact tctccaagat tattaggatt tagagtgata
     5461 ctaagtttag taataggcgc tttgtattga tccacagcct cttttaaatc ttgtgaaaaa
     5521 tactgcaaag tttctttagg agtgatattg cgagcattgt tttgtgttac tttatttaaa
     5581 tctttgacta aagaatttaa ctcatctaag ctatttttat ctacattttc actgtgcgtt
     5641 tttgtttgct c
//
LOCUS       DARGED010000101         5603 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.101, whole genome shotgun sequence.
ACCESSION   DARGED010000101 DARGED010000000
VERSION     DARGED010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5603
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.101"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            56..766
                     /locus_tag="SFZ84_001418"
     CDS             56..766
                     /locus_tag="SFZ84_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG8203520.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNTTVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVTQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            772..1323
                     /locus_tag="SFZ84_001419"
     CDS             772..1323
                     /locus_tag="SFZ84_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203521.1"
                     /translation="MSKITLILSFFITLFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFIFKKRQSRV"
     gene            complement(1346..1837)
                     /gene="fldA"
                     /locus_tag="SFZ84_001420"
     CDS             complement(1346..1837)
                     /gene="fldA"
                     /locus_tag="SFZ84_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG8203522.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIALKLGISDVFNISDIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(1837..2532)
                     /locus_tag="SFZ84_001421"
     CDS             complement(1837..2532)
                     /locus_tag="SFZ84_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203523.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLKIENEIHGLLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            complement(2535..2849)
                     /locus_tag="SFZ84_001422"
     CDS             complement(2535..2849)
                     /locus_tag="SFZ84_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG8203524.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            3021..4445
                     /locus_tag="SFZ84_001423"
     CDS             3021..4445
                     /locus_tag="SFZ84_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG8203525.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGIAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            4502..4972
                     /locus_tag="SFZ84_001424"
     CDS             4502..4972
                     /locus_tag="SFZ84_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG8203526.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYECAKILLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(4973..5596)
                     /locus_tag="SFZ84_001425"
     CDS             complement(4973..5596)
                     /locus_tag="SFZ84_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8203527.1"
                     /translation="MTYFLGEVLGEQYEIVFHVITEDGAYIAAIANSHISGRSLDSPL
                     TAFASELMQNKKYLEKDFLCDYKALIGKSKLIRGSTFFIKNHDKLVGILCINHDTSIM
                     RDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSVDCSYLNSDYQL
                     SITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK"
BASE COUNT         2122 a          859 c          744 g         1878 t
ORIGIN      
        1 catttagaaa atcattatag aattaaacat aatttattta aaggatttgt aaactatgaa
       61 aaaattaagt ttaattcttg cctgttcagc atctttgttt gctgcaagta attcagaaat
      121 tagtgatttt tattcaaaaa gcattaaagc acaatttcca aatactaccg ttagtgtatc
      181 aaatcgtcaa aaggttggta atacgggttt tgaaagtgtt attgtaagcg ttgaattaaa
      241 tggacaaaaa caagaaaaca ttctttttac aaaagatagt cttattaccc ctgatcttat
      301 cgacttgaaa acgggaattt cttatgctca agaatatgaa atgaaaaaat ttcaagaagc
      361 aagagaaaat tttacaaaaa atgctaaagc tgtaacacaa aaagaaacca tggtaatagc
      421 tttgggagat aaaaataaac ctgcaattta tgttttttcg gatcctgaat gcccttattg
      481 tagagaacat ttagctcaaa ttgataatga acttaaaaac tatcaagtta attatatttt
      541 aactccagta catggaaaat ctgcttttga aaaatccgct ctaatctaca aagaagcaaa
      601 aaaagcaaaa aatgataaag aaaaaatcgc aattttaaac aaatactatg atgcaaatat
      661 caaaaattat ccaaaagtaa gcgatgcaga attaaaagaa gttttttcct tatatgaaaa
      721 atatcgctca ttaggtctta gcgctactcc aactattatt aaataaacct aatgtctaaa
      781 attactttaa ttttaagctt ttttataaca ctctttatga gtgcttgcac caatgcaact
      841 ttcacacaaa gctttattca aacaagcaat gaaggcattt ttatcagatc acaaaaacaa
      901 caaagtttta aaatttcctt tcaaaatcct agtcaacttc aaactactct agatagagat
      961 ttggctttaa aacttaaaaa tttaggctta aaagaagtaa aagagaatgc agattatgaa
     1021 attttaatca atcttgtaga tatgaaaaag cattcttatg ctcaaaaaat cacaacttca
     1081 gcaagatttt tttatgattt tgatcctttg gaaagcgatg gagaatggat ggtagaaaac
     1141 tactatacta tgcaagttaa tttacaaatc aactctaaaa atcacaattc tcaaaaaaca
     1201 agtcttcttg caagaacagc ttatcttgga aataaagaac gctgtcaatt atctttagaa
     1261 aataaaatta taaatcaaat agtgagtttt tttattttta agaaaagaca atcaagagta
     1321 taaaaactct tgattttaag aattattaag caaaataagg tttgatttgt tctatccaag
     1381 catcaattct tgattcagtt tgatcttctt gattatcatt gtcaagagca agtccaacaa
     1441 atttaccatc tacaaccgca tcacttgctt caaatgtata accatcagtt gaaacttctc
     1501 ctaccaaatt tgcgcctgca tcttttaaat tttgagctaa tttacccatg ccaccacaaa
     1561 aagtatcaga ataactttca ctatcaccca taccaaatac agctacggtt tttccaccaa
     1621 gactaagccc tgaaaaatca aaaccatccc aatcatcttg taaatcacca cttccccaag
     1681 ttgaagttcc acaaattaat ttatcgtaag aatttatttt agctgcatca atatctgaga
     1741 tattaaaaac atcgctaatt ccaagtttta aagcaattgt attagccgct ccttctgtat
     1801 tccccatagc actaccatag attactgcta ctgacattat tttctcctta taatttgatt
     1861 tgatatttta tacggaacta attttaacat agttttgttt aaatcacaca aaaaatgttt
     1921 tatttcaata aaatgtgtga aatttttgtt acgcggacaa acaatataaa atttttcaaa
     1981 attgttttct tttatcaaat tcaataatcc atgaatttca ttttcaattt ttaaattatg
     2041 tgtattaatc tctttgcaaa gtggtaaaat tgcaaatttc ttatctatta taataagatc
     2101 accatcttga tctatatttt ttccattatt ttgaaaagaa accttatcat aaacataaga
     2161 gctaaataaa atttgcgcat caaaacaaat gccataaaga taaattctta aaagtcttaa
     2221 aagatcgaca ttcttagata ttttagtatt aaaaattaag ctttttcttt tttgaaagta
     2281 aaaagcgtat gcattaagct tgatatttat attttgaatc ttaccaaatg aaacatgcat
     2341 tatatcatgt aaaaaatttc caaatatcat ttttaaactc ttggtatttt ttgcatatga
     2401 aagaggaatt tttagagcgc tatcaacgct cgcattatat tgagttaaaa aagtcaacat
     2461 aagctcttga ttgtttaaat agcgataaat ttgcggtata aattcttgct tatcatcaaa
     2521 tccaaataac atctttaacc tttatagcaa gaaaattctt tattaagatt aaaaatttta
     2581 caatattcac aatacacaca acttacactt ctttttgcac aaactaatgg aattttacgc
     2641 tttttagctt catttttgat ttttttcata gtattatgat ttaaaaagct tgttaacatt
     2701 actatacatt ctgtatcaca aggaatcggc ttacgattaa ctctattttc attacgcgca
     2761 tcccagtgtt ctattttttt agcacctaaa tcatgtaaaa cagctctaat aggagtgatt
     2821 tcatctgcac caataaccaa aactgacata aattctcctt tgtgattttt aaaatatatt
     2881 ttgataatta ttattataat ataaaaaaac taaatttatt ttgaaattta ttatcaataa
     2941 aatgcaatta ttcagttaat tttaattttt aatagatata atttactaat tgataaaatt
     3001 tattatttta ggagaaaaca atgaaaaaat tgactaacga ttttggaaac attatagccg
     3061 ataaccaaaa ttcattaagc gcgggtgcaa aaggaccttt gcttatgcaa gattatcttt
     3121 tgcttgaaaa acttgctcat caaaatagag aaagaattcc agaaagaacc gttcatgcca
     3181 agggaagtgg ggcttatgga gaaataaaaa tcaccgctga tttatctgct tatactaagg
     3241 caaaaatatt tcaaaaagga gaaataactc ctcttttcct acgcttttct actgttgcag
     3301 gtgaagcagg tgcagcagat gctgagcgtg atgtacgtgg atttgccatt aaattttaca
     3361 ccaaagaagg aaactgggat ttagtaggaa ataatactcc aacttttttt atccgtgatg
     3421 cgtataaatt tcctgatttc attcatactc aaaaaagaga tccaagaact catctaagaa
     3481 gtaataatgc tgcttgggat ttttggagtt tatgtcctga aagtttacat caagtaacca
     3541 ttcttatgag cgatagagga attcctgcaa gttatcgtca tatgcatgga tttggaagcc
     3601 atacttatag ttttattaat gataaaaatg aaagattttg ggtgaaattc cattttaaaa
     3661 cccaacaagg gattaaaaat cttaccaacc aagaagctgc cgagcttata gcaaaagata
     3721 gagaaagtca tcaaagagat ctctataatg ctatagaaaa taaagatttt ccaaaatgga
     3781 aagttcaagt tcaaattctt gctgaaaaag atatagaaaa acttggattt aatccttttg
     3841 atttaacaaa aatttggcct catagtcttg tgcctttgat ggatataggc gaaatgattc
     3901 taaacaaaaa tcctcaaaat tattttaatg aagttgaaca agctgccttt agtccaagca
     3961 atatagtacc tggtataggt tttagccctg ataaaatgct acaagctaga attttctcat
     4021 atcctgatgc acaaagatat agaataggaa ctaattatca ccttttacca gtaaatcgtg
     4081 caaaaagcga agtgaatact tacaatgttg caggtgctat gaattttgat agttataaaa
     4141 atgatgcagc ttattatgaa ccaaacagct atgataacag cccaaaagaa gacaaaagct
     4201 atcttgaacc tgatttagtc ttagaaggca tagcacaaag atatgctcca ctagataatg
     4261 acttttatac tcaaccaaga gctttattta atcttatgaa tgatgaccaa aaaactcaac
     4321 tttttcataa tatcgccgct tctatggaag gagttgatga aaaaattatc actagagctt
     4381 tagaacattt tgaaaaaatt tcacctgatt atgcaaaagg aattaaaaaa gctttagaaa
     4441 aataattttt acttgccact tttggtggca aactaaagat tataataatt aaggaaaaac
     4501 aatgacaact cttagtttag aagaagaaaa aagatttgaa gagctttgca aaatggcttt
     4561 taattttgca agaaataatg aatgtgaaaa tcttaaaatc atgatagaag caggtttaaa
     4621 tgtaaattta aaaactcata aaggcgatag cttgcttatg cttgcagctt ataataattc
     4681 ttatgaatgt gcaaaaatac ttttagaaaa aggtgcaaaa gtagatgaaa aaaacgatcg
     4741 tggacaaacc ccattagcgg gagtttgttt taaaggatac ttacctatgt gtgagctttt
     4801 agtaaaatat ggagcaaata tagatgaaaa taatggctta ggtatgacac cttatacttt
     4861 tgctattatg tttggacgaa aagatgtggc agaattttta ctcaaaaaat ctaaaaataa
     4921 ttttttaaag aaaataagcc taaaaatact aaaatttatc aaaaaatttt agttattttt
     4981 taaatttctt cagataccta tagacactag gttctgaaat ttttaaaaat tttgctacga
     5041 taggaaccgc cccttttata ttaaaaatac ctttttcata tagcttttca gcaatttctt
     5101 ctttttgagt aatgcttaat tgataatcag aatttaaata actacaatct acgctttgaa
     5161 ctaaaatatc ctctatcgag tgacttaatg tttctatact tgaatcattt tgagaaaaac
     5221 taatatttcc taaaatatca cccatatctc caattttttc taaatcaatc atcttgcata
     5281 ttaaatctct cataatgcta gtatcatgat tgatacacaa aatacctact aatttgtcat
     5341 gatttttaat aaaaaaagta gatcctctaa ttaattttga ttttccaata agagccttat
     5401 aatcacataa aaaatctttt tctaaatatt ttttattttg cataagctca cttgcaaaag
     5461 cagtcaaggg agaatctaaa cttcttccac taatgtgact gttagcaatt gctgcaatat
     5521 aggccccatc ttcagtaatt acatgaaaaa ctatctcata ttgctcacct aaaacttctc
     5581 ctaaaaaata tgtcaacttt ata
//
LOCUS       DARGED010000102         5555 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.102, whole genome shotgun sequence.
ACCESSION   DARGED010000102 DARGED010000000
VERSION     DARGED010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5555
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.102"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..347)
                     /locus_tag="SFZ84_001426"
     CDS             complement(<1..347)
                     /locus_tag="SFZ84_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203528.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKSAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGE"
     gene            complement(442..1539)
                     /locus_tag="SFZ84_001427"
     CDS             complement(442..1539)
                     /locus_tag="SFZ84_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG8203529.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSVIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1652..2533
                     /locus_tag="SFZ84_001428"
     CDS             1652..2533
                     /locus_tag="SFZ84_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG8203530.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRK
                     NYNFNRALEKFEKIFKS"
     gene            2613..4481
                     /gene="rpoD"
                     /locus_tag="SFZ84_001429"
     CDS             2613..4481
                     /gene="rpoD"
                     /locus_tag="SFZ84_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG8203531.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(4497..5009)
                     /locus_tag="SFZ84_001430"
     CDS             complement(4497..5009)
                     /locus_tag="SFZ84_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG8203532.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(5006..5524)
                     /locus_tag="SFZ84_001431"
     CDS             complement(5006..5524)
                     /locus_tag="SFZ84_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG8203533.1"
                     /translation="MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMF
                     LHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFG
                     ENINVIGASGAICVLMGFYAVIDKNSTKGLMVAILLMSFVPLLMGVNVAWYGHIFGFM
                     CGYILAKIKEVK"
BASE COUNT         2331 a          862 c          735 g         1627 t
ORIGIN      
        1 ttttcacccg caatcacatc ttgaaaaaca actttaatat ccgtatctcc caataaagca
       61 gggaaaaata cttttgtgat attattggtt ataatatcat tgccttcacc cataaaagca
      121 ttgcttggct ttatggtagc tttagcgctt ttaagataac ttgccaaatc ctttatattt
      181 ttagaaaatt tatattctac atttttaaat tcaccttttg ttcctatcat atctttagtt
      241 ttatatcctt caaaagaaac ctttaaacta tcttctttaa aagatacagc acttaaagcc
      301 gaagctaaca agcaagaact taaaacactt acaagaattt ttttcatctt tattcctttt
      361 taataaattt aattaatgaa ttaaattata ttcttagttg attaataaaa taaaattttc
      421 taaaataaaa aataattttt attaccaaag tataccttta aaagctaagg ttaaaaaata
      481 tcctccaaaa atcaaaacaa gccctaaaac aaaagccaag ccaaataccc tagagccact
      541 ttttaaaaat tttttaaagt caatttgcaa gcctaaagct gccatagcaa aaacgataca
      601 taaagtacaa agtgttttac ctaaagagat gatatcactc gtagcaatac ctaaaatact
      661 ttctttgctt gctaaataag tatttaaaac tatcatgcct aaaaatgcaa aagcaaaata
      721 aggtatagtg atactttttg cagtttttcc actgcttgaa tgttgatttt tagcgaaaaa
      781 ataagtcact ataagcaaaa aaggcacaag taaaatcact ctcatcattt ttataatcac
      841 tgcaacatta gaagcacctt gctcaaatcc tgccatatcc tttgccattt cagcagcacc
      901 tgcgacattt gccacctcat gcaacgtagc tcccataaaa acacccatag cattttgatc
      961 aaaaaaagga aaaagattta aagaaaaagc tatgggatat aagaacataa atacaagtcc
     1021 aaaaatcacc accgtaccta cagctaaaat tcccttaaaa ggatcacttt tcaaacttga
     1081 ctctagtgct aaaaccgctg ccgcaccgca aatcgcactt ccagctccaa caagcataga
     1141 agtttcttta tcgagtttaa aaattttcgt tcctacaaat aaagcaataa taaaaacaaa
     1201 aaatatcact ataacagaaa gcaaaaatcc tttcaatcct acgcttaaaa gctcagttaa
     1261 agtgatatta aaaccatata aaacaatgcc aagtcttaaa agttttttcg cactaaaatg
     1321 cactccggct tgaaaatgat gttggtattt aaaaaaccaa ggagaaagca acactcctat
     1381 gataatagca aaagcagtcg ctgctaaatg agtggtatct ttgatacttt gaacactaga
     1441 aagatacata gcaaaaatca ctatacaagc agtaaaaagc aaacccttaa aatttgatcg
     1501 cactatagcc acgctatgtg ctaaaaaact tgttttcatt tattttcctt tttgtaaatt
     1561 ttgtgttatt atattttttt tattaaaatt atagaaatat attattttaa tttttataat
     1621 aaattttttt tattaaataa aggaatcact catgaaaatc aaagatatgg aaatattttt
     1681 agatctttta aacactcaaa gtccaactca tacagccaac aatttttcca taactcaacc
     1741 taatgtttca atagtaatta aaaatttaga aaataaattt gatggcattt tatttgaaag
     1801 acttggaaaa aaactcttac ctacaccaaa agctttagaa ctaggaaaaa attggttaaa
     1861 aattatacaa gcctactacc aaagcttaga aaaattaaac gacgaaagta tgctcttagg
     1921 ggaaataaaa atagcctcaa ctcaaagcat ttctgaacat tttttagctc ctattttatt
     1981 tgattttaag gcagaattta aaaacataga aattcgctct caaacgcaga attcaaaaga
     2041 atgtttaaat ttactaaaaa acggaaatat agaatttgca atcattgaag cagaacttga
     2101 tccagcttta gtggagtatg aaaatttaga aataaatttt tggcaagatg atgaacttat
     2161 agtagctaca agtgataaaa aactcaatga aaaagaattt tatatcgatg aacttttgga
     2221 acaaaagtgg attttaagag aagtaggctc aggcttaagg gataaatttt taaacgaaat
     2281 tggtgcaagc tcaaaaaaac ttaatatttt tcttgaactt gatagaatgg ctgcgattaa
     2341 agaacttgtt ttacaaaaaa aagcaatctc tattttttcc aaaaaaagca tagaaaaaga
     2401 attaaaaaat tcaacacttt atgaaattaa attaaaaaat atcgacctaa agcgtaaatt
     2461 ttatacctta aaaagaaaaa attataattt taacagagct ttagaaaaat ttgaaaaaat
     2521 attcaaatca taaacataat aaccgattta tatagaaagt taagcaattt ttagataaaa
     2581 tccaaagctt atataaattt caaggataat caatgaacgc caaaactcaa gaagctgaat
     2641 tagaagaatt atttcaagaa aatgcaaaag attatatcac atatgaaaaa ttggtaaaat
     2701 atcttacaaa acaaccaagt gcatcaacca ctaaaaaagt gcaagcatta atgaaaaaac
     2761 acaaagtgca acttttttca gcagctgaaa ttgcacaaat gaaaaacata gaagatgcaa
     2821 aaagacttca agaagaaaaa caaaaactcc aagatacaag ccttgagaac gaatttgatt
     2881 tagccaatga aaacgattta ttagaatgga gcagatcaga ctctcctgtt cgtatgtatt
     2941 taagagaaat gggacaaatt gctttattaa acaaagatga agaaattgaa atttccaaaa
     3001 aaatagaact tggcgaagat attatcattg atgctttttg ttctgtacct tatttgatag
     3061 attttatttt agattataaa gaacctttaa taaacagaga aagaagggta aaagaactat
     3121 ttaaaagctt tgacgatgaa gaaaaaagtg atgataaact tgatgaactt gatatagatg
     3181 aagatgaaga aaacgaaaca gaattagaat cagatgaaga aaatactaaa aaaaacagca
     3241 aaaaagaaga tgaaagaact ttaaaagtta tagaaaaatt taaagctcta gaaaaagcta
     3301 aaaaagattg gctaaaaaca tccaaagaca aagaaagcgg agatgaactt ttagataaat
     3361 taagcattgc attcaaaaaa aatattttaa aagaaaaatt aatggatcta ggccctactt
     3421 caaaacttat tagcgaaatc gtaaaatcaa tggaaactgc actaaaaagt gatgaagaat
     3481 ttgacaaaga acttaagcgt ttagaatacc gcttacctat gttttctgat gaacttaaaa
     3541 aacgccatgc agatatttta aaagatatta caaaattgag caaagaagaa atcacagagc
     3601 gagctttaga aacaaccatg gtaagcactt atatggaaat taaaaaacta tttcaaacta
     3661 aagaagccag tgaaaaaagc tttgatcttg aaaaatcacg cttaaaagaa attttggagc
     3721 aaattaaacg cggtaaaaaa atctctgatg aagcaaaagg aagaatggca aaatcaaact
     3781 tgcgccttgt tgtaagcata gctaaacgct acacaaatcg tggtctgcct ttcttagacc
     3841 ttatccaaga aggaaatata ggtttgatga aagctgtgga taaatttgaa tacaaaaggg
     3901 gttataaatt ttccacttat gcaacttggt ggatcaggca agctatttca agggctatag
     3961 ctgatcaagc aagaaccata agaattccaa tccatatgat agaaaccatc aatcaaatta
     4021 acaaaattat ccgcgaacat ctacaaaaag atggaaaaga acctgatgtc agtgttatag
     4081 ctaaagaagt aggtttaagc gtagataagg ttaaacaagt tattaaaatc acaaaagaac
     4141 caatttctct tgaagctcca ataggaaatg aagatgatgg taaatttgga gattttgttg
     4201 aagatagaaa ttcactttct ccaatggatc atatcttaaa ggatgattta aaagaacaaa
     4261 ttgatgaagt tttagatcaa ttaaacgata gagaaaaagc ggtaattcgt atgcgttttg
     4321 gtttaatgga tgatgaaagt gatagaactt tagaggaaat tggaaaggaa cttaatgtca
     4381 ctcgagaaag agtgagacaa atagaaagct cagctataaa aaaactcaaa caccctaaag
     4441 taggaagaaa actaaaaaat tatatagaag gttggaagta agagtcaatc tccttactaa
     4501 aaacccagat ctttttcttc ttttaacttg cgtacatgtt caaaaaaaac taattttccg
     4561 ctatgttttt ttaaattttt aaattcctta atatcaaatt ctaaacacaa gatagaagaa
     4621 gttggaaaag aagctaaaca tagcgaactt aataactctc caagctccat taaactagga
     4681 ttatgaccca ctaaaaatac ttcattaaac tcatcatcaa tatcttgcag aatttttagc
     4741 aaattttcaa cattgcaaag atacaatctt tcatcaaaac aaattctatt tttatcaaaa
     4801 ttataaaatt tggctatttt tttcgctgtt ttagcggttc taacagcagg acttgatagc
     4861 accaaatcag gatgaatttc atgcgaagca agatttttaa aaagtttttt taaatcttcc
     4921 tttccactct tagtaagttt tctttcaaaa tcatcgatgt cttcactctt acttgctttt
     4981 gcatgtctta taatataaat ttttttcatt ttacctcttt tattttagct aaaatataac
     5041 cacacataaa cccgaaaata tgaccatacc aagcaacatt tacccccata agcaatggca
     5101 caaaactcat aagtaaaatt gccaccataa gtccttttgt gctattttta tcaataacag
     5161 cataaaagcc cattaaaaca caaattgcac cactagcgcc tatgacattt atattttctc
     5221 caaaatattt aaaatcaaaa tacacataaa aaacacttaa aagtgagcac aacaatccgc
     5281 caataaaata aataaaaata aaacacaaag cacccaaata agtttctaac atacgcccaa
     5341 attgaaacaa aactatcata tttaatataa gatgagttaa atttccatgt aaaaacattg
     5401 aacttaaaag ctgccaataa gctccattaa aaaataaaat attcaaacca aggatattgt
     5461 aataatcata agaaatcaaa aaataacata aaatatttaa aaaaattaaa aaaattgtaa
     5521 gcaaaatata aaacctttat tttttataat attgt
//
LOCUS       DARGED010000103         5490 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.103, whole genome shotgun sequence.
ACCESSION   DARGED010000103 DARGED010000000
VERSION     DARGED010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5490
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.103"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            93..863
                     /locus_tag="SFZ84_001432"
     CDS             93..863
                     /locus_tag="SFZ84_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG8203534.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(879..1613)
                     /gene="fliP"
                     /locus_tag="SFZ84_001433"
     CDS             complement(879..1613)
                     /gene="fliP"
                     /locus_tag="SFZ84_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG8203535.1"
                     /translation="MKKILLFLLLSMSLLAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDIPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            1756..3045
                     /gene="glmU"
                     /locus_tag="SFZ84_001434"
     CDS             1756..3045
                     /gene="glmU"
                     /locus_tag="SFZ84_001434"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG8203536.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            3042..4196
                     /gene="coaBC"
                     /locus_tag="SFZ84_001435"
     CDS             3042..4196
                     /gene="coaBC"
                     /locus_tag="SFZ84_001435"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG8203537.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCMSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            4193..4810
                     /locus_tag="SFZ84_001436"
     CDS             4193..4810
                     /locus_tag="SFZ84_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203538.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            4814..5482
                     /gene="uppS"
                     /locus_tag="SFZ84_001437"
     CDS             4814..5482
                     /gene="uppS"
                     /locus_tag="SFZ84_001437"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG8203539.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
BASE COUNT         2016 a          653 c         1030 g         1791 t
ORIGIN      
        1 agttttaatt ttttaagttt gaaacaaatt gctaataaca aaataagata aaattagtat
       61 aattttttta caaaaaaatt tgaaaggaaa ttatgaaaaa aattattttg atttttatct
      121 ctttttttgc tttaaatttg agtgcaaaag atttggttgt aggaatggag cttggatatc
      181 cgccttttga aatgagcgat aaaacaggca aagcaagtgg aattagcgtg gattttttag
      241 aagcttttgc aaagaaaaac ggctataaac ttgtagtaaa aaatatcgct tgggatggtt
      301 taatacctgc tttaaaaaca gccaagatag atcttattat gtcctctatg acaattaccg
      361 atgagagaaa gaaagtggtg gattttagca ttccttatgc taaggcaaat ttggctattt
      421 taactccttt gaactctgat attacaaata tcaaagattt agataaaaag ggcaaagttt
      481 tggctttaaa gcgtggttct acagggcatt tatatgcggt taaaaattta aaaaatgcaa
      541 ctattaattt atttgataaa gaaaatgctg ctattttgga agtgattcaa ggcaaggctg
      601 atggattttt ttatgatcaa cttacgattt atcggacttg gcaaaagcat caagatacaa
      661 ccagagccat tttagcgcct tttcaagaaa atcctgagtt ttggggtata gcagtacaaa
      721 aaggcaatgc agaacttaaa aaagagcttg atgaatttat tgcagaaagc aaaaaagatg
      781 ggctttttga ttctttagga gagaaatatc ttaaagatgt taaagatact tttaaaaaga
      841 ataatttaga attctttttc taagaaggat tttccttctt aggttacaaa gctttccaca
      901 agcctttgca ctagcaaatt ccatccatcc actaatacaa aaattaagag tttaaaaggt
      961 aaagagatca tagtaggagg tagcatcatc atacccatag ccattaaaac tgagcttaca
     1021 accatatcta tgactaaaaa gggcaggtag attaaaaacc ctatttcaaa agcggtttta
     1081 agctctgaaa tcataaaagc aggaactaaa accgtaaggg gaatatcatc tatggttttg
     1141 ggattaggta gattgcgtat gcgataaaaa agggctaaat ctttttcgcg agtattttta
     1201 agcataaaat ctttaaaagg ctttgctcct tttataaaag cctcttcata gcctattttt
     1261 tctgctaaat aaggttttat accttcatta taggattttg tagctacagg ttccatgata
     1321 aaaaaagtta aaattaaagc caaggttacc aaaatagtgt taggtggcat actttgcgtc
     1381 cccatagctt gtcgtaaaaa tgaaaatact acaataagac gcaagaaaga agtcataaca
     1441 aaaactatac ttggagcgag cgcaagtatg gttaaaacaa tcactatatt taaagtagta
     1501 acaagctgat taggtgtatt gggtgcactt aagcttaaat ttactgtagg gatagttgct
     1561 tcagcagcca ataagctcat gcttaaaagt aaaaataata atattttttt caaaatttaa
     1621 aaaccttttt ttgtttttta ttaaagaaat ttaaatttta tcttttgatg actaaaaact
     1681 agtttaaggg tattaggatt ttaactttaa actgctaaaa tagtctttta gacttcttga
     1741 taacaaaggt aaaaaatgaa aacttctatt ttgattttag cggcaggatt aggcactaga
     1801 ataaaatcac aaaagccaaa ggttttgcaa gagctttgtc aaaaaagtat gattttacac
     1861 attttaaaaa aggcttttgc tttaagtgat gatgtaagtg tagttttatc gcatcaaaaa
     1921 gaacgcgttg aaaaagaaat tttagaatat tttccaaaaa cacaaatttt agagcaagat
     1981 ttgcaaaatt atccaggaac tgcgggagct ttaagtgggt ttgagcctaa aaatgaaaga
     2041 gtgttgattc tttgtggtga tatgcctttg gttgagcaaa caagtttgga agctttgttg
     2101 ggtaataatg caaaattaaa tctagcagtt tttaaagcaa gagatcctaa aagttatggt
     2161 agggtggtga taaaaaacga tagcgttgaa aaaattgttg aatttaaaga tgcaaatacg
     2221 caagaaaaag agataaatac ttgcaatgct ggggtttatg tgattgactc gaggctttta
     2281 aaagagcttt tacctttgat tgataacaat aatgcggcaa aagagtatta tttaaccgac
     2341 attgtaaaac tagcaaaaga aaaagatgtg atgattaaag cagtttttgt agatgaagat
     2401 gaatttatgg ggattaatga taaatttgaa ctcagtatag ctgaaaattt catgcaaaaa
     2461 aaaattaaaa aatactggat gcaacagggt gtgatttttc atttaccgca aagcactttt
     2521 ataggtgcag atgttgaatt tgtaggtgaa tgtgaagtat atgaaaatgt aaggatagag
     2581 ggcaaaagta agattataaa ctctatcatt aaaagttcaa gcgtgataga aaattccatc
     2641 gtagaaaata gcgatgtagg gcctttggca catttgcgtc caaattgtga gttaaaaaac
     2701 actcatatag gaaattttgt agaatgcaaa aatgcaaagt taaataccgt aaaagcaggg
     2761 catttgagct atttaggaga ttgtgagata gatagtggaa ccaatatagg ctgtgggact
     2821 atcacttgta attatgatgg ggtaaaaaag cataaaacca tcataggaaa aaatgttttt
     2881 gtaggttctg atacgcaatt tatcgcacct gtaaaaatcg aagatgaagt gatcatagca
     2941 gcaggaagca cagtaagtgt caatgtagaa aagggtgctt tgtttatcaa tagagcaggg
     3001 cataaaatga taaaagatta ttattataag aaatttcaaa aatgaaaacc atacttttag
     3061 ccattagcgg tagtatagct ttttataaat cttatgagct tatttctttg tttaaaaaag
     3121 aaggctttag ggtaaaagtt ttgctttcta atggtttgtt aaaatttgct agcaaaatga
     3181 gttttgaagc cttggttgat gaagttttat gtgaggaaaa tgaaagttgg caaaattcaa
     3241 acaatcacat agcttttagc aaggatgtag accttgtttt gtttgcccct gcaagtgtta
     3301 attctatcaa taaacttgct tttggtatag cggataatct ttttatccaa accttaatcg
     3361 cagcaaataa atctcttatc atagctcctg cggcaaatac aaatatgttt catcatttta
     3421 gcacgcaaaa ttctttaaag atgcttaaag aaaataaagc tttgattata gagcctattt
     3481 gtaaagtttt agcttgtaaa gatgaaggcg taggagcctt agctgaagtt aagaatattt
     3541 ttaatatcgt caaaagagaa cttttaaaag aaaagttttg gtgcgataaa agtgtagtta
     3601 tcacaggtgg cggcacaaaa gaaaagatcg atgatgtgcg ttgtatgagt aatttttcaa
     3661 gtggaaaaat ggcaaaggcc atagctgatg ctttttattt tttaggagct agggtaaaac
     3721 ttttaagctc tgtggaattt gatacgcctt atgagctttg caaatttgaa agttctaagg
     3781 atctaaagga gcttttggat aaaaatttaa atcatgactt tttgattatg acggctgctg
     3841 taagtgattt tatccctcaa agtgtaaaag ggaaaattaa aaaaaatgag catttacagg
     3901 gtttaaattt gcatctatct ttaaatgaag atttgcttaa aacttgcaaa tttcaaggca
     3961 aaaagatagg ttttaagatg gaatttgatt ctcaaaatgc cttagaaaat gcgaaaaaat
     4021 ctttaaaaga taagcaactt gatatggttt gtcttaatat cattgatcaa aaaaattatt
     4081 ttggaagcga tcaaaatgag ctttatttta tcactttaaa caatgaaaat aaaagcactt
     4141 tgcaaagcaa agaaaaattg gcatttgaat tagtaaaatg gtgtgaaaaa ttatgagtat
     4201 gattaattct accttaccta tacaaatgaa agttttagct aaatcaggtt atggacatta
     4261 tacgctttta ttaaatcata aaaagattca aaccaaaagc atgatagagc ttgaaattgg
     4321 tgctgaatat ttagctgaac tttatatgca aaatggtgga gttatacaat ttaaacatct
     4381 ttcaaagcgt cctaatttta aaccttttga agagggattg gctttgataa tcgctatttt
     4441 agaggataaa atttcttata aaaaattcat catacaaaat cttttagatt gtaaagatat
     4501 agagcgttat cagatattaa aagaaatgct ttttgcaagt tttgaaaata tttatcatat
     4561 tccttttatc tttgaaaata aatcttgctt gtttcaaatg cgtaaaagag caaaatattt
     4621 agaaatttac ttatatttta gtgtttttgg agctttaaaa attttaatag actcgcaagg
     4681 cattagtgtt tttacacctt ttgctaaggt gcaaaaattt ttaaacgaac atttagattt
     4741 taatgtatcg caagaaaaca agattgaacc tttgtttgtt ttcaaaaggc tttttgattt
     4801 taaaggatga aaaatgaatg aattaaaaca ccttgctgtt gttatggatg gcaataggcg
     4861 ctgggctagg gctaagggtt ttttggcaaa acttggatat tcccaaggag ttaaaactat
     4921 gcaaaaattg atggaagttt gcatggaaga aaatatttca aatttaagcc tttttgcttt
     4981 tagtacggaa aattggaagc gtcctaaaga tgaaattgat tttatttttg aacttttaga
     5041 tcgttgttta gatgaagctt tagaaaaatt tgaaaaaaat aatgtgcgtt taagagctat
     5101 aggtgattta tcgcgcttgg aagataaagt aagagaaaaa attaccttag ttgaagaaaa
     5161 aacaaagcat tgtgacgcac tttgtgttaa tttggctata agttatggtg caagagatga
     5221 gattataaga gctgctaagc gtgtgattga aaaaaaactt gagctaaatg aagaaaattt
     5281 aacgcaaaat ttagatttac ctttagatgt ggatttgatg cttcgcgttg gaaacgctaa
     5341 aagactttca aatttcttac tttggcagtg ttcatatgct gaaatttatt ttagtgaaac
     5401 tttatttcca tctcttacca agagagaatt taaaaggatt attaaagaat ttagaaatag
     5461 agaaagaact tttggaaaat gatatttttc
//
LOCUS       DARGED010000104         5473 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.104, whole genome shotgun sequence.
ACCESSION   DARGED010000104 DARGED010000000
VERSION     DARGED010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5473
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.104"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..709
                     /locus_tag="SFZ84_001438"
     CDS             <1..709
                     /locus_tag="SFZ84_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8203540.1"
                     /translation="KDKEQIYLKAQKDYDELVQHNFTQRILNDKDSIVDGIYNERIKK
                     VHTQTIDLAKNVNVGGEYLTNVGLSKDTIVGLSNTLNVGVDNKVRVSKNSSEYVGENK
                     DIEIGANQNTIIHKDEIRNVKGNKKEVVEGHYDINVSDKTQVLSEKEMDYKSKDNILF
                     TSNESIGFESDKNTSMVADNITTIHELKADSEATIQVGETIINAKPDCVIIKAGGVEV
                     IIDSNGLVVKGGELKAE"
     gene            720..1487
                     /locus_tag="SFZ84_001439"
     CDS             720..1487
                     /locus_tag="SFZ84_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203541.1"
                     /translation="MKKPFYKLKRFYIPCGVLIALIIFISLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASNFICSIPQKEQLLENMINSYEKMDLLYK
                     TKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            1471..1644
                     /locus_tag="SFZ84_001440"
     CDS             1471..1644
                     /locus_tag="SFZ84_001440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203542.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNAKIKN
                     YSSGYCKYYCKIA"
     gene            1660..2520
                     /locus_tag="SFZ84_001441"
     CDS             1660..2520
                     /locus_tag="SFZ84_001441"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203543.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQEGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQIDLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHKYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            2508..4460
                     /locus_tag="SFZ84_001442"
     CDS             2508..4460
                     /locus_tag="SFZ84_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203544.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLQLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNESSSSAKEPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIRFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKDHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKEVKIKESNEK
                     ENKTSKKDKKEQSIIKDNLYLYSINEKGEFGSNGSIGMAQAQLLEDLSKQAKFVQSEG
                     ENIISLKVAYPEKIDNKIIFVGKVYE"
     gene            4453..>5473
                     /locus_tag="SFZ84_001443"
     CDS             4453..>5473
                     /locus_tag="SFZ84_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203545.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYIELQLEKESDKTLNWSYVEC
                     NSEKKMRSLLDVDCRSIEAKDLKFIASFKGNICGFHLPISRDNEPIKDIKDYKYYIIV
                     FAYDEKKAIPSLEDFHIVIDMSFRVGVGDDEDVEESKLRNDFNSDIIQTNCIFSVFEA
                     VEFLKACQSFKEKAKETNNYEFFKNYPQLAGKIAYIYYRFDLANEKFIKSVSDGDKYL
                     KEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSNKSDEEKIMFFQEFLEDLVKAFDIE
                     PPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKEEQILSTFFHEFRHFYIDKNNSKEI
                     KNQHTE"
BASE COUNT         2274 a          590 c          877 g         1732 t
ORIGIN      
        1 aaaagataaa gaacaaattt atttaaaagc ccaaaaggat tatgatgaat tagtacaaca
       61 taatttcact caaagaatct taaatgataa agattctata gtggatggaa tttataatga
      121 aaggattaaa aaggttcata ctcaaaccat agacttagct aaaaatgtca atgtaggagg
      181 agaatactta actaatgtag gcttatctaa agataccata gtaggattaa gcaatacctt
      241 aaatgtagga gtagataata aagtaagagt atctaagaat tctagcgaat atgtaggaga
      301 aaacaaagac atagaaatag gtgctaatca aaatactatt atccataagg atgagataag
      361 aaatgtgaag ggaaataaaa aggaggtggt tgaggggcat tatgatatta atgtcagtga
      421 taaaacgcaa gtgttaagcg agaaagagat ggattataaa agcaaagata atattctttt
      481 tacaagtaat gaatccatag gatttgaaag tgataaaaat acaagcatgg tagctgataa
      541 tatcacaact attcatgagt taaaagccga tagcgaggcg actatacagg taggagaaac
      601 aattattaat gcaaaacctg attgtgttat cattaaagca ggtggagtag aagtaattat
      661 agactctaat ggacttgtgg ttaaaggtgg agagcttaaa gcagagtaaa ggataaacaa
      721 taaaaaaacc tttttacaaa cttaaaagat tttatatacc ttgtggtgtg cttatagctt
      781 tgattatttt tataagctta acttatcatt ttttacaacg acctttagag cttatctttt
      841 gggatagata ttattatgaa aaagaatatc aaaatgctaa agatatgtat aaactattta
      901 aaagtaatga agaagaattt aaaaaagttt ttaaagagca aaacttaaat gaagaattaa
      961 aaacaaatca aaaagaattg ttaaattata tgcatcattt caaaagagat tctaatttta
     1021 tgcaaatttt aggtttggat aatgcttatc ttaaagctct tagagataag acaagtatat
     1081 ttggaagaaa aagtgaaaat aatcttaatt atttttatct tgcttctaat agcactacta
     1141 atttagatga aatgaataat tttataagca ttatagataa atatatcatt tttatcaata
     1201 aaatagatac attgcctgac acttatacac tcatgaaaat agcctttaac gctgattatt
     1261 ttctttttaa tctcgtccca tttgcttcaa actttatttg ctctataccg caaaaagaac
     1321 aattattaga aaatatgata aattcttatg aaaaaatgga tttattatac aaaacaaaac
     1381 taaaaaccga aattcaagaa atgatatacc cagcgatata tgcaacaaaa aaacttaatc
     1441 atttcataga tattgccaaa ggaagattaa atgcatgtgg aaaataattt aagtcctgaa
     1501 gatagacaag gtatagaaaa ttaccttatt attttaaata cgataagttt tctaggcgat
     1561 ttgaatataa aatataacaa tcataatgca aagattaaaa attattctag tggttattgt
     1621 aagtattatt gtaaaatagc ttagatttta ggattataaa tgaaaaaact tttttataga
     1681 cttaattttt tatttaatac aaaattaaaa aaattaactt ggattgtagc tatattattt
     1741 atcggatata aattactttt ttataccgaa attaaaaatg gttatgtaaa agtgacttta
     1801 cgtcctatag taacacttaa tcaagagggt tattgcataa aagaaggtag aagattaagc
     1861 caaaatgaat tatttgaaag agctactaaa gattggcttg aaaaacttta taaccaagca
     1921 catgatccac tagttatgaa tgcagatgga gattggcttg atatcactaa ttgctattat
     1981 tcaagcaaag aaaaagcaaa gaaaggttta aattgtcaat tttacagcaa cggcaaacaa
     2041 tttggtatcg atgatattgc aaaacaaatt gatcttaata aaagccaaga agaaaatatg
     2101 caaaaaataa tgcaaggctt tagcattgta agaccttttg aggaggaaaa aattttaaca
     2161 gatgatttag agcttaaata ttctttactc ttacaagata ggttaggtga ttttactttt
     2221 atgccttatg atattagatt tattgtcgtt ggtggtgata ctggttatta ttcaaaattt
     2281 ggttattctg tttttgcttt aatgatacaa aaatatttta ttggaaacga ccatgacttt
     2341 aaatttaaaa aaggcactgt agaatattgg aaaaataaag ataataaaaa caatcataaa
     2401 tacatatatt atcccattac aaattgtggc gaagttgaaa tgcgttatga ctttgatcct
     2461 cctggattat attatcaatt atttcatgat atgcaatgga gggatgaatg gcatcgttaa
     2521 atttaaaagg cgattatgga gtagaaattt tatcctatta tctttggggg caaagcacac
     2581 cgccaagtga tttagccaga aaagataacc gtgtgcttat aggtaaagat tatcaagcaa
     2641 gagatgaaaa agaaataatc atacaagctt cagcacttga ttatatgaaa tatgtagata
     2701 gatataccaa tgctacaaat tttgggatat ttcaaaattt tttcaaaagt gtttttagtg
     2761 aaaaagaact tggggaattt aaagataaaa tagaaaatga aacatatatt ttagaattag
     2821 acgatatcat aaaaactaag gtatatggag gtgtaaatcc gtttcttgat gaagataata
     2881 agaataaaga taaaagcact aaagataaag aaaataatga agaaaataaa tacgaaaaat
     2941 acgatgaaaa taaaatggca gttagaataa ttcattatta tttagataca aattcaggca
     3001 attatgctaa aagagctttt gcttttggaa gcacaagtat agcatttaat aaagatgtaa
     3061 aatttcatat tagtgctaaa acttatgaac ctgtttgtat ttccaatcta caactttatc
     3121 ctttaaagga taattttgat tttgaaagtg atagcagtct tgcagaattt gtaaatttct
     3181 ttctagaaaa ggaattagat cccttaaaaa taggtagaac ggttaatatt cattttatag
     3241 atcaagaaaa gattacacct atggttattt ataaaagagt atttcaaata cttcaaaacc
     3301 aatcttttaa ttctttaact ccttctataa cttcacttcg tgaatattat aaaacccgta
     3361 tcctgccatc tggggtatta tatttgcaag atgacaatac aaactctcaa accaatttag
     3421 aacagactat cctctacaac aatacaagtt ttaacaaaat ttcaaaagaa cccttaaatg
     3481 aatcctcatc cagtgctaaa gaaccttgct ttatcacttt atatttaaaa gatgaacaca
     3541 ataaacccat tgctaatgct aaaatcatta tcaaaggttt taaacatgat gaagctttaa
     3601 gagtagttaa tctaaaaaga cgcagtgatg aaaagggtaa aataagattt gataaagaaa
     3661 agtattttag tgattgttat agctttaaag taaagcttga tgaaagtgaa gcttattttc
     3721 ctactccttt acaaaatgct aaaaggatat ttaataatta tacccatcac aaagttggac
     3781 tcatacttaa atttaaagca aaagatcatt tagtttatga tggatttaat ctctatcatt
     3841 ataaaggaaa tgaattaatt aattcttata tggcaagaag tggtactgct aaggcagata
     3901 atgaaaaaag aagtaaaaag caaattgcaa attattttta ccaagatgaa aaagatacaa
     3961 gtaaaggtaa aaaagcttat ttttattatg atgatgaaag tattaaagat agatttggca
     4021 ctttgcctga aggagaatat tatttaaaga ttaatgaaat agctaaagat actaacccta
     4081 gctttttaaa agattatccc tttgaaatag gaaaaacttg gggaaaatgt tgtgtaagat
     4141 tatataccaa taaagaatgt tctaaaactt ttaaagaagt aaaaataaaa gaaagtaatg
     4201 aaaaagaaaa caaaacaagc aaaaaagata aaaaagagca aagcataata aaagataatc
     4261 tatatcttta ctctatcaat gaaaagggag aatttggcag taatggtagc ataggtatgg
     4321 cacaagcaca gttattagag gatttaagta agcaagctaa gtttgtgcag agtgaggggg
     4381 aaaatataat ctcactcaaa gtggcttacc ctgaaaaaat agataataaa attatatttg
     4441 taggaaaagt ttatgaataa aacactaata tttcatgaaa attcccatat tgatttaaat
     4501 gcttcttttg caccagggac ttatatagaa ttgcaattag aaaaagaaag cgataaaacg
     4561 ctaaattgga gttatgtaga gtgcaatagt gagaaaaaaa tgcgatcttt gttggatgtt
     4621 gattgtcgtt ctattgaggc taaagatctt aaatttatag cgagttttaa aggtaatatt
     4681 tgtggatttc atttacctat aagtagagat aatgaaccaa taaaagatat aaaagattat
     4741 aaatattaca tcatagtctt tgcttatgat gaaaaaaagg ctatacctag tttagaagat
     4801 tttcatatag ttatagatat gagctttaga gtgggagttg gagatgatga ggatgtagaa
     4861 gaaagtaaac taaggaatga ttttaatagt gatataattc aaacaaattg tatttttagt
     4921 gtttttgagg ctgtagagtt tttaaaagct tgccaaagtt ttaaagaaaa agcaaaagaa
     4981 acaaataatt atgaattttt taaaaattat ccccaacttg caggaaaaat tgcttatatt
     5041 tattatagat ttgatttagc taatgaaaaa tttattaaaa gtgtaagtga tggagataag
     5101 tatttaaaag aaagggagaa atttgttaaa aaatttatag atgtttattc tgatgagaaa
     5161 ttttttatca taccaagcta taaagcaaaa tttagtgaat tttcaaacaa aagtgatgag
     5221 gaaaaaatta tgttttttca agaatttctt gaagatttgg taaaagcttt cgacatagaa
     5281 ccaccaattc caactattta taaagagttt aaacaataca ataacggatc ttataatagt
     5341 gtaggaaaaa aagcattata tttgaattta aaaaacaaag aagaacagat attatcaact
     5401 ttttttcacg aatttagaca tttttatatt gataaaaata attctaaaga aataaaaaat
     5461 caacatacag aaa
//
LOCUS       DARGED010000105         5397 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.105, whole genome shotgun sequence.
ACCESSION   DARGED010000105 DARGED010000000
VERSION     DARGED010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5397
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.105"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(145..555)
                     /locus_tag="SFZ84_001444"
     CDS             complement(145..555)
                     /locus_tag="SFZ84_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG8203546.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPMQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFEKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(562..1305)
                     /gene="fabG"
                     /locus_tag="SFZ84_001445"
     CDS             complement(562..1305)
                     /gene="fabG"
                     /locus_tag="SFZ84_001445"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG8203547.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(1377..2855)
                     /locus_tag="SFZ84_001446"
     CDS             complement(1377..2855)
                     /locus_tag="SFZ84_001446"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG8203548.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LAMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            2935..3996
                     /locus_tag="SFZ84_001447"
     CDS             2935..3996
                     /locus_tag="SFZ84_001447"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG8203549.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3996..5204
                     /locus_tag="SFZ84_001448"
     CDS             3996..5204
                     /locus_tag="SFZ84_001448"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG8203550.1"
                     /translation="MKISLFGYGKTTCSIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALTIEKILLDTLSYELLNSFVMEKNKLEEIKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         1782 a          967 c          727 g         1921 t
ORIGIN      
        1 attaaaaaat ttttgcaata tatcataatc tattccttgc aaattaaacg gaatgattat
       61 accttaaaaa aataacaaaa agttaatatt aattaagata atatttatct taattaatat
      121 atagttaata aaattatcaa atcattaagc cttaaaaagc ttaaattctc cattcataaa
      181 ttgcattcta gcgcttaaat gatcaagata aaaaacttca aattttggat tttgcggagt
      241 ttcataaaga tttacaagat aaggatattt ttcaaacatc atttttttaa cttctaaatt
      301 tggttcaaaa accgcattag ctctaagtct taaaaaagtc ccatcttttg cacaagagca
      361 aaattcaata ccattataat tctttatatg cttaaaaagt ccttttgtat ttgctgtgca
      421 aaaataaatt ttatccccca caagcaatgg actttgcata ggacgcactc taggatttcc
      481 acaagttcct aaagtggcta aaaatgccgg tgcattatca tctaaaaatt gcgctatttc
      541 ttttaaatcc atcatttttc cttacatata taaaccacca ttgatcttaa gcacatcgcc
      601 tgtcacataa gaggcataat cactaagtaa aaacgctaca caattagcca cttcttcagg
      661 ttctgcaaag cgttttaaag ggatattgtc ttgataggtt tgtttgattt catcacttaa
      721 aacttcagtc atatcgcttt ttatgaaacc tggagtcaca cagttaaagc gtaaatttct
      781 acttgctcct tctttagcaa aagatttagt catagctatc attccacctt tactagcaga
      841 ataatttact tgtccagcat tgcccatttc tccgacaata gaagcgatat ttacaacagc
      901 accaaaacgt tttttactca tggtttttaa agcttctcta caacctaaaa aagctgagct
      961 taaatttgta tctacaacgc tactaaagtc ctctaatttc attcttaaag caagtttatc
     1021 atttgtaacg cctgcattat ttacaagata acttaattct ccatcactct caactatagt
     1081 ttttacaccg ttttcaaact catcttcttt gcttgcatca aatttaatca cagcagcaac
     1141 gccaccactt gcaataattt catcttttaa agcatctgca agttcaggtt ttgaacgata
     1201 attgatccaa actttaagtc caaaacccgc caaagttttt gcgatagaag cacctattcc
     1261 cttacttgct ccagtaatta aaacattttt tccactaaat ttcattatct atccttaata
     1321 agtttaattt taaaaattgc aatcttaaca aatttcttat aaaaaaggca aacaaactaa
     1381 aataaagcct cattcatttc ttttggaatt tctaagtcta aaattttaag cacgcttgca
     1441 gcgatattgc taagccccat attatcttta atctttgaaa ctccctttgc ttgcacaaaa
     1501 acaaaaacat caaaagtggt gtgattggta agcaaatttc ctttttcatc ttgcatagcc
     1561 tcgcaatttc catgatcact tgtaatgata aaagcataat catgcttttt tgcacattct
     1621 ataatctcgc ccaaacaagt atccaccgct tcgacagcct ttatagcagc attaaaatca
     1681 cctgtatgtc caaccatatc tccatttgca aaatttacca ctataaaatc ctcacccttt
     1741 tctatgcctt ttttcactgc atcacacact tcaaaagcac tcatttgggg tttttcatca
     1801 taagttttta ccttggggct tgggattaaa acccttgttt cattttctaa aagctcttct
     1861 tttccgccat taaaaaagaa agttacatgg gcgtattttt cggtttctgc ggtatgaagc
     1921 tgactaagcc ctgctttaga aatcacttgc gctaaagtat tttcaatttt ttctttttca
     1981 aaaagcacag ggagtttaaa tttatcatca taaacactca tagcaagtaa attttcaaag
     2041 attttttcgc gttcaaactc tttaaaatcc ttagaattta acacttcaac aagttgtttc
     2101 attctatcat ttctaaagtt gataaagata atgccatctt cttctctcat gcccttgtaa
     2161 ttctcatttt gagctgcttt gataaactca tcagtaacat tttcatcgta agatttttgt
     2221 aggtattcta ataaatttgg cactttataa gccttaccta acaagcactc ataatactct
     2281 tttaccctat cccaacgctt atctctatcc atagcataaa aacgcccaca aagcgtagca
     2341 aaatgcacgc ctaagttttc acaaaattct tttaaatctt ttatgaaatt taagccactt
     2401 tttggactta catcacgccc atcagtgatt gcgtgagcaa aaacttcatt gccatttttc
     2461 gcacaaattt caagcatggc tttaaaatgc gtatccatag aatgcacccc gccatcacta
     2521 taaagcccta taatatgcac tcttttacat tttgctaaaa gtttttgtaa attctcattt
     2581 ttttcaagtt ctttgttttc aatggcttta ttaatacgca ctaaattttg ataaataata
     2641 cgcccacttc ctatacacat atgccctact tcactatttc ccatctgccc ttctggcaaa
     2701 cctacagcta aaccactcgt ttttagtaaa gaatttggga cttccttaaa aagcttttca
     2761 taacttggtt ttttagctgc ttcaaaagca ttaaacttac tattcttatt ataccctatt
     2821 ccatctgtaa taattaaaac gcatttttgc ttcatttttc tctcttttat aagaattttt
     2881 ttggttagat tttactaaaa ttaaactttt aaaaaccaaa aagaaggcta ggttttgtat
     2941 tatctttcag atttaagtca ttatgctttt tttacttata ttagtgtgcg tgcaggattt
     3001 gcatttttta tcgctttatg tttgtcttta tttttaatgc ctaaatttat tacttgggca
     3061 aaagctaaaa atgctagtca acctatttac gaatacgccc cagaaactca taaaaccaaa
     3121 tgccatactc caaccatggg tgggcttatt ttcattagtt ctgcagtaat cgcaagttta
     3181 ttttgtatca aatttgataa tatttttgct ataagtgctt tactttgttt gatacttttt
     3241 tgtttgatag gtctcataga tgatttaggc aaagttctaa aaaaagataa tcattcagga
     3301 cttagtccaa gaatgaagct tttagcacaa atcatcgctg gacttatttg catcttacct
     3361 ttatatttta gttcagagct tagcacggaa ctttttatac ctttttacaa acaccctctt
     3421 tttgatatgg aaatttttgc cattgctttt tggattttgg ttttaatttc tagctctaat
     3481 gctgtaaatt taaccgatgg acttgatggc ttagctacag ttccaagtat tttttcttta
     3541 tctactttag ggatattctt atatttgagc ggaaatttaa attatagtga atatttactt
     3601 ttgccaaaaa ttcaaggact tggtgaagta gtgattattt gtgctgcatt aatcggtgct
     3661 ttaatgggat ttttatggta caactgttat cctgcgcagg tttttatggg ggatagcggg
     3721 agtttagctt taggtggatt cataggattt ttagctatca ttagcaaaaa tgaaatttta
     3781 cttttactca taggttttgt ttttgttctt gaaactgttt ctgtaatttt acaagttgga
     3841 agttttaaaa tttttaataa aagagtattt aaaatggcac ctattcatca tcattttgaa
     3901 aaagttggct gggtagaaaa taaaattata gtgcgttttt ggatgatagc cttactttca
     3961 aatttacttg cacttgcatc aataaagcta agataatgaa aatttcactt tttggatacg
     4021 gaaaaaccac atgttctatt gctgaaaatt tagtagataa gtttgggcct tttgatatct
     4081 atgatgatca ttttacagaa acaaaaaaag atacactagg aaatttactt ttaaatccta
     4141 atgattttga tgataattta agcgatattg aaattcctag tccaggtttt ccaccaaagc
     4201 acaaactcat tcaaaaagca aaaaatttac aaagcgaata tgactttttt tatgatatca
     4261 tgccaaaatc cgtttggata agcggaacca atggcaaaac caccaccaca caaatggcta
     4321 cacatttatt atcacacatt ggtgctgtta tgggtggaaa tgttggaact cctttagcag
     4381 agcttaatcc ttatgcaaaa ctttggatac ttgaaacttc atcttttacc ctacactaca
     4441 ctcataaagc taaacctgaa atttatgcac ttttacctat aagtcctgat catctttctt
     4501 ggcatggaag ttttgataat tatgttcaag ataagctaag cgttttaaaa agaatgaatg
     4561 aatgtgatgt agtaatactg cctaaaattt atgcaaatac tccaacaaaa gctcataaaa
     4621 taagctatga agatgaaaaa gatctagctg ttaaatttgg cattgatacg gaaaaaattt
     4681 cctttaaaag tcctttttta ctcgatgcta tcatggcttt aactatagaa aaaattctac
     4741 ttgatacttt aagctatgag cttttaaata gctttgtaat ggaaaaaaat aaactcgaag
     4801 agattaaaga cagtcaaaat agactttggg taaatgacac taaagccaca aatgaaagtg
     4861 cagtaatggc tgcgcttagt cgctataaag ataaaaaaat ccatcttatc atagggggag
     4921 atgataaggg tgtagatctt agcaatttat ttgattttat gaaaggattt gatatagaac
     4981 tctatgctat aggtattagt accgaaaaaa tgcttgatta tgcaaaaaaa gcgaatttga
     5041 aagcctataa atgtgaagtt ttatctaaag ctgtaaatga aatttcaaat cacttaagag
     5101 tcaatgaagt agctctttta agtcccgctt gtgcaagttt agatcagttc aactcttacg
     5161 cagagcgtgg aaaagtcttt aaagaatgtg tgaataaaat ttaatttatt ttacttttca
     5221 tagaaaattt taaattttat ccttctagta ttttcaaacc cctaaaaaca ccctattctc
     5281 tctaaaaacc ctaaccagca gcaaactctt ttttaaacac gattctaagt atcatctaaa
     5341 acaacaataa aaataaacat aggatttata tataaagtaa gtaatgaaga catttaa
//
LOCUS       DARGED010000106         5303 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.106, whole genome shotgun sequence.
ACCESSION   DARGED010000106 DARGED010000000
VERSION     DARGED010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5303
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.106"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(131..274)
                     /locus_tag="SFZ84_001449"
     CDS             complement(131..274)
                     /locus_tag="SFZ84_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203551.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(474..762)
                     /locus_tag="SFZ84_001450"
                     /pseudo
     CDS             complement(474..762)
                     /locus_tag="SFZ84_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
     gene            complement(759..908)
                     /locus_tag="SFZ84_001451"
     CDS             complement(759..908)
                     /locus_tag="SFZ84_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203552.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKTMAKMEKELEKPAINAVFQ
                     RLKNK"
     gene            1180..1407
                     /locus_tag="SFZ84_001452"
     CDS             1180..1407
                     /locus_tag="SFZ84_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203553.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            1394..1676
                     /locus_tag="SFZ84_001453"
                     /pseudo
     CDS             1394..1676
                     /locus_tag="SFZ84_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
     gene            complement(1944..4780)
                     /locus_tag="SFZ84_001454"
                     /pseudo
     CDS             complement(1944..4780)
                     /locus_tag="SFZ84_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
BASE COUNT         1748 a          931 c          761 g         1863 t
ORIGIN      
        1 ttggaaaaaa ctttttttat atataaaatt acataaataa gacaatcaaa atacaataca
       61 aaagattaaa gaatatagta aaaacggttt tttaaaaaaa ctaatataaa atatatggct
      121 aattatataa ttaatcctcc tctaagccat cattaattcc tgcttctgca agttcaagct
      181 gttctttttg atacacttta tcatctttaa aggcttcaaa acttttttcc cataaaacct
      241 ttctttgctc tatatattct tgatctttac acatattaat cctttttatt tatcaggttt
      301 aaaaccacta tctaaaatta tttttgtcat tgcaccttta agtttatcaa aacgatttaa
      361 agcttgcata ttactaactc taagcaatct tattttatca tcttttttat aaaacacttt
      421 aaaaacttca tcactttgtt tgtgttttac tatatcatct aaagtaggac tacctatgaa
      481 ttcatattct ttggtaaaat cttatctaaa tctaaaaagt gcatacctag aaatatcgaa
      541 gtccgtttat ttccatcagc aaatggatga aattttacac aggaaaatat taaatgtgta
      601 attttatcag ttattgtagg ataataatca tcgtttttta tatactctaa tgcactagcc
      661 aaatatccta ctttgtgttt cattataacc acttaatccg cctgtttttt caataatctt
      721 ttcgtgtata gcaatagctt cgcttagttc tatatatttc atttattttt aagtctttga
      781 aacaccgcat ttatagcagg tttttctaac tctttttcca tttttgccat agttttttta
      841 actgcttctc tctcagctaa atattcttta ttattttttt gttgcgtatt atattctgtg
      901 gttttcattt tactaccctc tttattcttt caattaatat cctaaatact gtatagacta
      961 ttttaacatt tatatttgat tagcaaatca atatgaagct aaaaaaatta atttgctaat
     1021 tatacccaaa ttaattttca ttaagcaata aataaaacaa tcaagtcaaa aaaatccgtt
     1081 tcaaacccct aaaaaatagg cattctgtaa caaaaatact tgcaaaaatt attaaaaaat
     1141 ggtataatta tgttatataa attgagaaag gagttgctta tgactcttat tattgaaaat
     1201 gttaatgaaa attttttacc tgcattcaag ggtttagcaa aaagcataaa tgccaaatgt
     1261 aaaatttcta agcctaagtt gagtagtttt gaaagtaaga tattaaatgc aagcaaagaa
     1321 cttgataaag aaaaaaaagt caatactgca ttaagcttta attcgcatca agactttgtg
     1381 aaagcttatc aaaatggcaa aatataaaat ttattaccat aaagatttta taaaagctta
     1441 caaaaaaaat aagcgatgaa gagcgtaaaa taactgatga agttattgta aaactttcta
     1501 atgatgagaa tttagaacct aaatataaag atcatcaatt aaaaggtgta ttaaaagatt
     1561 ttagagaatg tcatataaag tctaacttgt tattaattta tcaaaaacat aataatgagt
     1621 tagagctaaa tattttaaaa ctaggtagtc atagtaagtt atttaaaaaa tattgaaagg
     1681 aataaagatg gataaatgta ggaaaaaagc aaaagtgact acaaccgaaa aactcatact
     1741 tgttctttgg ctttcttgcg gagttgcagc tattgttttg cttttgtgtt attccttgct
     1801 aaaaatataa aaatagttcc ctatgatgag aaaaagcatg ggggaacaag tgaaattggg
     1861 ggatatatag aaagcgatcc tcgtaaattt gattatatat tcggtgctat acgagatcac
     1921 taagcctaac taaaaagcta gacttatttt ttgctcatag catcaaataa accttgagct
     1981 tcttttgcaa gctcattacc tgatttactt gcatcttgta tcatataaga gctaggattt
     2041 actcccattc tcctgttagc atcttgttct actatggcat ctttagcact attattgacc
     2101 acattagaag tacttgttcc ttgatttttg aaattactta tagcagcccc actttgttgg
     2161 ttaaattcat ttcttatatt atcccccccc cccctgttgt tcctaagctg tttaacttat
     2221 tttgattagc tactgcatca ttattatgag cattattagc tcctacactt gaaggactgt
     2281 aataagattt attgctaaca tcatgatttc tatcagcatt tggcttagct gtattcatat
     2341 tagcataatg caacaagcct tgcaaatccc cccccccctt gcggctaagt tttctaaccc
     2401 tttagctgca gcagcaactt gttgttctct agttccaccc aaattatttt cagcaatgta
     2461 attttcagcc atattaggta aaattacttg cctgtatagc ttcactgtat tgacttgctt
     2521 cactataaga atgtgctttt tgtttggcat cagcaaattc actacctgtg cttgtagata
     2581 gagcattaga ataagcagaa gccacactat cattagattt aatgatattg ccaagttttt
     2641 cagcatacat tttatcaaat gcagcctacc cttctttact taggcttctt gaatattctt
     2701 gtgtttcagt tgagcctgtg cctattgaag ctgtcccttt aatttctcca cctatttttc
     2761 caccatttcc aaagattgca atccctgctg agccactagc ataagcgcta atacttcctt
     2821 ctaaagcttt tttgtctgtt tcagagaagc tagatttatc gcttaatgct tcattcatag
     2881 tttcttttaa agctttcgtt tctgctttct caattgcttt agtatcttct atactcctgc
     2941 accatgattt ctaagataat cagaggtaat accgtgatta atgcctgttt tgtgagtatc
     3001 ggcaatagaa ttagcaagag aatcttgtct agtttgagtt tcgctttgtg cgtgttttgc
     3061 atcaagtcct attcatatta gaaatttcac catgatttcc caaagcaaaa cttgtacctg
     3121 tattcacatc tctagctgtt gttccacccc ctgttatact agacatgcta aatctaccac
     3181 cccctgcact tatagcactt tgcaagctca tcacccctgc attcatcgcc caaacttcat
     3241 ctcctctaag agcagcaatg ctagtttgtg tagataaggc ttgctgattt gcaaagcttc
     3301 cagcagctct tgaagcacct gttagagctt gagataatcc agaagcaaaa gttacaaatc
     3361 cttgttcact tgctttagct atagcataag ctaaaacagg agtactcatt acaagataat
     3421 tcatgaaatt tgatctattt gctacttctt tgaatataag aatgttatct cctaagctta
     3481 aagctgcttt tccacctgtt atcacctgtg caacattcat aagattaaaa tcatttataa
     3541 aattaataat acaaagtata ggagtccaaa gtactatcca aatacataga gtaaaaaaca
     3601 tcttaatatg agcataagag ccaaacacaa tagaaagcaa agcaacaagc caagacaaac
     3661 ctatgataat agctgttaaa taagctttag ctaaaggcaa ataagtttgt gccaagtgtc
     3721 cttgtgcttg catacttgca taaaattgct gatccgcata agcagtattt gcagccacag
     3781 aagcaggatt taaacctact gatttagcgg tattaatgat tgcatcttga gaagcaagca
     3841 ttatcatgga ttgttgcaaa taagatctag cacttacagc ttgttcgtta tagatttgtg
     3901 cagcgcctaa gaacttttgc tcataatttg ccatatcatt cgccatacca agcaaagcag
     3961 catgaatctt catagcttca tctgtatcgt ttttaatcat ttcaacgatt tgaggacctg
     4021 catcagaaca aggcacaata ctttgttttt caatattatt gttattttca aacaaaggag
     4081 taagctgaga gccattgcct atgtttgtga aaagatcttg tattaaatta tcagagtttt
     4141 gaaaaagatt tctaccttgt tgattaagca agatacctac tgaaacgcag tttctaaagt
     4201 aaaaatcaat atttttttgt aaagttgcat caatagccga aagctttacg cttggcaaag
     4261 tactcatcac ttgaagtgaa aaacctaaac ctgcattaga aaaatttgta gattgtggag
     4321 ttgaaaaatg tttttccata gcttctagga taaccttctc aaattgcgtc atcaatgcaa
     4381 agctttttcc tatacctata ggaatttgag aaatgacata atctttgcta gtgacttcat
     4441 cgtaaatcat gaagcggtga ttattgtcat ttggtgcttt taaaaacatg taccacacta
     4501 cagcaaaaag cataaacatt tttccaaatt caaacacagg acttgtttgt ccatccattg
     4561 cttttttgat actgaaaagc aataatgaaa tagccaaggc tgcattaacg atataatctg
     4621 tttcagtggt tataccttta accgcctgca tgatttcatt tatcacatcg ccataacccc
     4681 aagtatagat tagatttcca ttagctatgt ttgtagcacc aaataaaaat gaagatgcaa
     4741 aaaacaaagt gctaaagaat aacaagtaaa atcttttcat ggattatatt aaagaagtta
     4801 aagagtttgt ttggtgtaat tataaaaggg tgcaacgcca aagggctgca accctttagc
     4861 gttaatttac cgcccagaag ggaggtgagt tttaatgctc aaaattgttc taataattat
     4921 actcttaatg ctttgctatg tcaaggctta ttgagtatcc cctgcttttg cagggtttag
     4981 aacaatccct ttggtttaac caaacaaact tttaactaag cctatcttcc tttctattga
     5041 tttattttat tttttaattt atatttttct tgcttatgct aaaagataag attcaatcat
     5101 aaataaaata tattaagaag tcaaagaatt tgtttggtat aattgcatta agggttttgc
     5161 cacaaggctg caaccctgtg gcataatcac accctagaaa gggggtgaac tatatgacac
     5221 gactcatact tataattata ctaatttgta taattactgt caaggcttat tagccttgcc
     5281 cctttggggg tgagtttccc ctt
//
LOCUS       DARGED010000107         5165 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.107, whole genome shotgun sequence.
ACCESSION   DARGED010000107 DARGED010000000
VERSION     DARGED010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5165
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.107"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..360)
                     /gene="yaaA"
                     /locus_tag="SFZ84_001455"
     CDS             complement(<1..360)
                     /gene="yaaA"
                     /locus_tag="SFZ84_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG8203554.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKKLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVR"
     gene            complement(453..1571)
                     /locus_tag="SFZ84_001456"
     CDS             complement(453..1571)
                     /locus_tag="SFZ84_001456"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HEG8203555.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            1792..2631
                     /locus_tag="SFZ84_001457"
     CDS             1792..2631
                     /locus_tag="SFZ84_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8203556.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            2672..3919
                     /locus_tag="SFZ84_001458"
     CDS             2672..3919
                     /locus_tag="SFZ84_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203557.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(3902..>5165)
                     /locus_tag="SFZ84_001459"
     CDS             complement(3902..>5165)
                     /locus_tag="SFZ84_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG8203558.1"
                     /translation="NVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKAGN
                     IHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMSAM
                     AEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEASL
                     SFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGGER
                     INSIPKHAKALVHFKDEVKSNNWIKCEFKEEGEFEICDQSKKLLSLINSFTHGVRAYD
                     ENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRSFN
                     FYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNIHN
                     PHSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         1575 a          710 c          840 g         2040 t
ORIGIN      
        1 tcttacaacg ccaaaaagat tagaaaatat aagagtattt tctaaaatat aagcttgact
       61 ttttttatct aaagctttaa aattaagata ttcataactt accccagtat aaagcaatat
      121 agcttcttga gtgggagctt gttttaagtc gtgtttaaat ttatcaattt cattttcgtt
      181 tttaatgcca aaaagttctt gtaatttttt taaacttgca tttttgataa attctccata
      241 atgctttaaa gcttccattc tataaggaaa taattcttta aatataaatg agttttcatc
      301 gatgggattt tttgtacaat tttcattttt gctttcacta ggggagaata aaattttcat
      361 tttagccttt tttgttaatg ttatgaaaac attaagagca aagaaattta atcttgcttt
      421 taatgttttt gaagttttta tcattttaaa atttaaaatg acgctccgcc cattaacata
      481 gaaaacatga taaatggaag tataattttt aacgcttctg tggcatcttg attgttgatg
      541 cttagttttt ctatgctgtc gattccctgt gtgctatagt cactaacagg gatgttttta
      601 aattttaaat caagattgag tttataatca tcattttgag tgatattgtt taaaatagct
      661 aaagctttat caaagattaa tgcttgttct tcattttgac tttgagtttt taaggtttgt
      721 aaattttcct tagcagttgt tatatagcta ctaaatacgc cttcggtttt aagagttgaa
      781 tcaattttaa aattgtttaa gatgatgtat ttttggattg tattgctaaa atctgaagct
      841 tgttcgtagt ttgctatatt aagaagttca ttgatagctt gttcatccat agctaaagtt
      901 tgagtgttaa attttatacc cttagaatca aggtaattaa gcaaatcttc ttttagattt
      961 atatttagat ttgtattgaa atttaatttt gcgttataaa attttatatc aagattatct
     1021 agataattgt tttcttgttt gtttatagag ttatcaaatg ataaagtata agaatccgag
     1081 cttaatttat tgataaaaga tctgattttt ggatcttgtt gaaataagct tgcattgatg
     1141 tcactaacaa ctttttctcc aagtttaaaa tcttcaaaaa ccaaatttga ttgtatgctt
     1201 ttttggtttt taaaaagatc gttgtaatat tctttaatgc taattgatgt atttgcttcg
     1261 cctttgtaaa tttcatttga acgaattttg atattttttg cttgaaatag ttcttgatac
     1321 tcatcgttat tatcttttgc aagagttttg aaatttggac ttaaacacgc tataaaatca
     1381 ccatctgcat tgcatttaaa atcagaaaat tcaatcttta ttccagagtc ctgagaaaga
     1441 cttgcaattt cttgtttaac tgtttgattt agttgatttt catatttttt aactgttttt
     1501 tcatctatgg aatttccgca agctgaaaac aaaacagcta ttccaataga gagaaaaata
     1561 ccttttttca tagttttctc cttaaaaaat ttaaaaaaaa gattatatct ttttttactt
     1621 aaaatttaaa caatactaaa agagagtgtg tgattaatta catttttaca cataggaaaa
     1681 tctttttagt ttgtttcaaa tgcattattt ataattttaa gtataattaa ctttgcaatt
     1741 attatatatt tttgcaacag ctttaagctt atttttaaag aaaggaaatg tatgaaaaaa
     1801 atacttctaa gtgttttaac gacctttgtt gcagtagtat tggctgcttg tggaggaaat
     1861 tctgactcta aaactttaaa ttctcttgat aagatcaagc aaaatggagt tgttaggatt
     1921 ggggtatttg gcgataaacc accttttggt tatgtagatg aaaaaggaaa caatcaaggc
     1981 tatgatatag ctttagctaa acgcatagca aaagaacttt ttggcgatga aaataaggtg
     2041 caatttgttc ttgttgaagc tgcaaatagg gttgagtttt taaaatcaaa taaagtagat
     2101 attattttgg ctaattttac tcaaactccg caaagggcag aacaggttga tttttgcttg
     2161 ccttatatga aggtagcttt aggcgtagct gtaccaaagg atagtaatat aactagcgta
     2221 gaagatttaa aagataaaac cttgctttta aacaaaggta caacagcaga tgcttatttt
     2281 acgcaaaatt atcctaatat taaaacttta aaatatgatc aaaataccga aacctttgcc
     2341 gctttgatgg ataaaagagg cgatgcttta agtcatgata ataccttgct ttttgcttgg
     2401 gtgaaagatc atcctgattt taaaatgggt atcaaagagt taggtaacaa agatgttatc
     2461 gcaccagcgg ttaaaaaagg cgataaagaa cttaaagaat ttatcgataa tttgatcatt
     2521 aaactaggcc aagagcagtt ttttcacaag gcttatgatg aaactttaaa agctcatttt
     2581 ggagatgatg ttaaggctga tgatgtagtg attgaaggtg gaaaaattta ataaagggct
     2641 ttttgccctt tatattgatt taggataaaa tatgcaaaaa aaatacaaaa atattattta
     2701 tgcttctttg ggtggaattt tagaatttta tgattttgtg ctttttgcct tttttttgga
     2761 tatttttgct aaggtattct ttccgcaaaa tgatgctttt tggatgcaga taaatgctta
     2821 tatagccttt ggtgctgctt atttagcgcg tccttttggt tctattgtga tggcacattt
     2881 tgctgataga tatggaagaa agaatatttt ttatatttct atgcttttga tggttttgcc
     2941 tagttttgct ttagcttttt tgccaagtta tgaaagtata ggtatatttg ctactttgat
     3001 tttatttact atacgcattt tgcaaggttt agccgttgga actgaggtga gcggagcttg
     3061 gatttatgtg agcgaatttg tcaaagggcg tcaaattcct ttagctcttg gttttatttc
     3121 agcgacttta accataggtt tattgctagg aaatattgcc actttaggca taagatctta
     3181 ttttacccca gaagaagttc aaagctatgc ttggagaatt ccttttatca taggaggatt
     3241 ttttggaatt ttagctttgt ttttaagaaa taaactcagc gaaactccag aatttataaa
     3301 agttcaaaat gaaaagaaaa ttttaagttt tccattgttc gaagctttaa aaactcataa
     3361 aatgagtatg cttgtttgtt ttttaatgac catggtttta acaagcggtg tggcaacttt
     3421 gatgatttta cctaagtatt ttgaaagtct tttagctatg agtaaaactt ctgctttatg
     3481 ggtgcaaaat tttgctattt tagcggtgat ttttggagct ttatttcaag gttttttagc
     3541 aagcaaatgg ggaagctata ggatttgttt tatttttagt atagctttta ttatttttgg
     3601 tgtgcttttt agtttttatg atgagaattt tttattttat tttttactgg cttgttttgc
     3661 acaaggtatt attactttcg cgcctgtttt tatgacgcaa atttttaaaa gtgaactgaa
     3721 atttagcggg cttagttttg cttataatat ttcttatgcg attttaggtt ttttaacccc
     3781 ttttatagtt aatgcttttt ataaagagta tttgggtatt tatcttgcta tagtgggatc
     3841 ttgttccttg ctttgcgtgt ttttgttaaa acgcgttttt gcaagaagca agattaaaga
     3901 attaagcatt gtcttttaaa acttcaaaaa caaccttaga tattttttca actgaagcga
     3961 tttcacaatg ctcatcagtt gaatgaggat tatggatatt tgggcctata gaagcgcata
     4021 aaagctcttg ttttttctct ataatgccac actcaagccc tgcatggata gctgaaactt
     4081 tggcattagg cgatactttt ttaagcgctt taaaaaccat gtcgctaagt gcgtttggtt
     4141 tgccttccca aggtggatag aaattaaaac ttcttacttt aaaatcaaaa gccttgaaaa
     4201 attctaaagt ttcaaattct acttgcttaa gtccatcaag tatattagat cttgcaaaaa
     4261 gtgcgaattt gatttggtta tcttgcattc ttaaagtagc taggttaatg cttgtttgaa
     4321 ctatatctag attttcatca taagctctaa ctccatgagt gaaagaattt ataaggctta
     4381 aaagtttttt actttgatcg caaatttcaa attcgccttc ttctttaaat tcacatttta
     4441 tccagttatt actctttact tcatctttaa aatgcactaa agctttggcg tgtttaggta
     4501 tagaattgat tctttctccg ccttcaaaag aaatgatttc tccttcattc tcttgtatga
     4561 atttagccat ttctttgatg gaactttttt cattgcgtat gatatttatg cctgagtgtc
     4621 cacctttaaa attttgcgca caaagctcat aaattttacc cttttttcta agggtattaa
     4681 aagacaaact tgcttctata tctactccac ctgcacagcc tatcatgatc tcatcatcgc
     4741 tttcatgatc taaatttaaa agcattttag attctaaagt gtgctcgagt gaattcactc
     4801 ccatgagtcc tacttcttca tcgtttgtaa aaagacattc taaattttca aattcagcca
     4861 tagcactcat catgatggct atacctatgc cattatctgc accaagactt gaatttttgg
     4921 ctcttaaaaa gccattttct tcataaactt ctaagtttgg tgcatcgccc atacagacca
     4981 tatcataatg gctttgtaga caaatttttg gtttgccttt tatggcatgg atatttcctg
     5041 ccttatctac actcacctta aagcctttat ctttggcgta agagcttaaa aattctttca
     5101 tttgttctgt ttcataactg caatgaggaa ttttgcataa ttgtttaaaa ttttctataa
     5161 cattt
//
LOCUS       DARGED010000108         5053 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.108, whole genome shotgun sequence.
ACCESSION   DARGED010000108 DARGED010000000
VERSION     DARGED010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5053
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.108"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1634)
                     /gene="tssF"
                     /locus_tag="SFZ84_001460"
     CDS             complement(<1..1634)
                     /gene="tssF"
                     /locus_tag="SFZ84_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEG8203559.1"
                     /translation="MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSKDPDIER
                     IIENLAILSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNL
                     IIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAET
                     KICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNIEKIGL
                     NPDESSLSYNDLGFEAFSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKP
                     FPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQ
                     VKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMD
                     ETISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSV
                     LSFSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKK
                     GTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASI"
     gene            complement(1631..2023)
                     /gene="tssE"
                     /locus_tag="SFZ84_001461"
     CDS             complement(1631..2023)
                     /gene="tssE"
                     /locus_tag="SFZ84_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HEG8203560.1"
                     /translation="MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCY
                     AVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFI
                     VKCFFQDDRFKEFNIEIIFKNNRYCEVK"
     gene            complement(2026..3480)
                     /gene="tssC"
                     /locus_tag="SFZ84_001462"
     CDS             complement(2026..3480)
                     /gene="tssC"
                     /locus_tag="SFZ84_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HEG8203561.1"
                     /translation="MANTKAVDMPIIEQIMEKSKYSKTDESYSIAKRGVAEFISEIVK
                     SDNAEEKINKFALDEMIAHIDYLLSKQMDEVLHNEEFQKLESTWRGLRFLVERTDFNE
                     NIKIDLFDIRKEEALEDFENNPDITQSVVYKNIYSSEYGQFGGEPIGAIIGDYQLGSA
                     SPDMTFLNKMASIAAMSHSPFLTSFGPKFFGLDDYSELANIQDLQGLLEGPQYTRWRT
                     FRENEDSKYTGLLVTRFLARSPYDPEENPIKSFNYKENVHASHNHLLWANSSYTFCTR
                     LTESFAKYRWCGNIIGPKSGGTVKDLPTYLYENFGTIQSKIPTEVLITDRREYELAEA
                     GFITLTLRRDSNNAAFFSANSPLKPKLFQNTPEGKEAETNYRLGTQLPYIFLISRLAH
                     YLKVLQREEIGSWKERSDIENGLNEWIRQYISDQENPPSEVRSRRPFRAAQVKVSDIP
                     GEPGWYKIGLSVRPHFKYMGGNFELSLVGKLDKE"
     gene            complement(3482..3967)
                     /gene="tssB"
                     /locus_tag="SFZ84_001463"
     CDS             complement(3482..3967)
                     /gene="tssB"
                     /locus_tag="SFZ84_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HEG8203562.1"
                     /translation="MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNE
                     TPLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDS
                     LAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQG
                     N"
     gene            complement(4036..>5053)
                     /locus_tag="SFZ84_001464"
     CDS             complement(4036..>5053)
                     /locus_tag="SFZ84_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system domain-containing
                     protein"
                     /protein_id="HEG8203563.1"
                     /translation="LLLFQHLKKLIDENNAYILAQKRKIQNFIQNFIQEYNKTKVLIS
                     SEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKSPVTQVSVNIRSDNINSLNERE
                     YKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPECNNEKITKIRKPDADIIRI
                     LLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKKKKNKQLDILIILTSDFISK
                     FDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKKTDKEHTLQDFEQMLMNIDK
                     ENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVELMEKTLLKDYLAEEYENAK
                     SKIK"
BASE COUNT         1659 a          780 c          613 g         2001 t
ORIGIN      
        1 ttaatactag caaaagaagc taaaaattta gatataatca atcccaataa atacacctcg
       61 cctaaagtgt aaaacttcga atctttaata ctaaaaatag ctaaggtccc tttttttgtg
      121 atattttcat ctattaaata agtgctttta ctttgaatat cgattataga ttcttgcaaa
      181 agcttataaa tcttccaatt tgattgatta tctaaaaagc tatagctttc caacacacca
      241 aaaaaagctt ttttgctcaa tattgtttga tatgaaaaag ataacacaga aacaagcttc
      301 cataataaat taccatcaac actacatctt cttgtttcgc ttggaatttc cacatttttg
      361 gtatcgacac cttttagatc gcaggtatta atatcaccta tttttaattt tgaaggtaaa
      421 tctccattgg agcacaaaag atcaatactt atagtttcat ccattatata agaggaaaag
      481 aaagaaattt cgctaaatac ttctcctttg gaattctttt tagtatttac gctataaaaa
      541 tccttttgat tatcttttaa aaattcaaag cgttcaaaac ttttatagtt ttttaatagc
      601 cttttgccgc cttcactatt atgtgcttta acctgtagtg tctgtatgat ttcgtaagct
      661 ttaggttggc ttctatccac aaaaattcta taactatctt ttttgtgatt atttataaga
      721 ggttctgcac tttttgtaaa gatattgata ataggtgtca tgcttaaaga aagtaattct
      781 tttctaaaaa tacaatttgc aggaaatggt ttagagaatt taaattcaat attaattgtc
      841 tttccttgac aattatttaa aatatccaaa ccattgattc ttaaaaaatt aaatttatgt
      901 ggcatgaaaa aatattctct tagtaaggaa aatgcttcaa aacctaaatc attataagat
      961 aaactacttt catctggatt caatcctatt ttttcaatat tataggtatt aagaaaaaat
     1021 tcttcatcag tatctaaact ttgaattttt aattctttta aataagaatg catgtataat
     1081 aataaagtac tagacatata ggtatcattg cctagatata aattaatttt ttccaaaccc
     1141 aaatcacata tttttgtttc tgccttattg acttgcaaag ttaaattgaa agtataatct
     1201 tgatttttac tagatataaa aacttcgctg atggagatag aataaagata aacatcatat
     1261 actgttttaa attcacaaac acatttgtct attggttttg atttaataag agttcctttg
     1321 ggaataatta aattattttc tttactattt tgttcaaatt taaattcttg catgcataaa
     1381 gaaggtaaag gatttgtata atttggagaa acaatattaa tcaaagattc tgcaatgtgt
     1441 ggtatatttt catcaagctc ttgatggatt ttagagctta aaatagctaa attttcaata
     1501 attctttcta tatcaggatc tttgctatca tatgccaaaa atggtgttaa ctttggataa
     1561 ttttttataa aatactctct tttttcatat agatattcaa gctctttttg ataataaaaa
     1621 atattatcct tcatttaacc tcgcaatatc tattgttttt aaagatgatt tctatattaa
     1681 attctttaaa acgatcatcc tgaaaaaaac attttacaat aaaagaaagt tgccaaggac
     1741 ttaaattatt atcataagtg atagaaacta cacatattct tttttcatag ttatcaatta
     1801 gttttcttat ttccttggcc attgatacgc ataattcatt agagttaaga ttaatatcag
     1861 ccatattagg cattcctaaa ttttttacag cataacaatc attaattttt gcattgagca
     1921 aaacctttat attgtttttt acatcctcaa aatcattttg atagaatgga atatgaatgt
     1981 tttgctcatc taaattatgg attagtttat ctagcaagga cattattatt ctttatctaa
     2041 ttttcctact aaagaaagtt caaaattacc gcccatatat ttaaaatgag gtcggacact
     2101 tagccctatt ttataccatc ctggctctcc tggtatatca ctaactttca cttgtgctgc
     2161 tctaaatgga cgacgacttc ttacttcaga aggcggattt tcttgatcgg aaatatattg
     2221 tctaatccat tcattaagtc cattttcaat atcgcttctt tctttccagc tccctatttc
     2281 ttctcgttgt aaaaccttta aatagtgcgc caatcttgaa attaaaaaga tatatggaag
     2341 ttgagttcct aatctgtaat ttgtttcagc ttctttacct tctggggtat tttgaaataa
     2401 ttttggtttt aacggagaat ttgctgaaaa aaatgctgca ttattactat ctcttcttaa
     2461 tgttaaagtt ataaaacctg cttcagcaag ttcatactct ctcctatctg taatcaaaac
     2521 ttctgtaggt atttttgatt gtatagttcc aaaattttca taaagataag taggcagatc
     2581 cttaacagtc cctccacttt ttggtcctat aatgtttcca caccatctat atttagcaaa
     2641 gctttctgtt aatcttgtac aaaaagtata cgaagaatta gcccacaata aatgattatg
     2701 cgaagcatga acattttctt tatagttaaa gcttttaata gggttttctt caggatcata
     2761 agggcttctt gctaaaaatc ttgtcactag taagcctgta tatttagagt cttcattttc
     2821 tctaaaagtt ctccaccttg tatattgagg accttctagc aaaccttgca aatcttgaat
     2881 attcgcaagt tcagaataat catcaagccc aaaaaatttt ggtccaaaag atgttaaaaa
     2941 gggagaatga ctcatagccg caatactagc cattttattt aaaaaagtca tatcaggact
     3001 tgctgatcca agttgataat ctccaatgat tgctcctata ggctctcctc caaattgtcc
     3061 atattctgaa gaatatatat ttttataaac aacgctttgt gttatatctg gattgttttc
     3121 aaaatcctct aaagcttctt cttttcttat atcaaatagg tcaattttta tattttcatt
     3181 aaaatcagtt ctttcaacta gaaatctaag tccacgccaa gtagattcaa gtttttgaaa
     3241 ttcttcatta tgtaaaactt catccatttg ttttgagagt aaataatcaa tatgggctat
     3301 catttcatca agtgcaaatt tattgatttt ttcttcagca ttgtcgcttt ttacaatttc
     3361 tgaaataaat tcagcaacac ctcttttagc aatactataa ctttcatcgg ttttagagta
     3421 tttgcttttc tccataattt gttcaataat tggcatatca actgctttgg tatttgccat
     3481 cttaatttcc ttgctcttct tgtttaattt ctaaaagtaa tttttcttta gttttttcat
     3541 tttttaacgc ttctaaaaca gcttttctaa aatcaggaat attacccata ggacctttta
     3601 aagccattaa tgcttctctt agctgcaata atttgtttag ctcgggtatt tgtttagcta
     3661 agctatctgg agaaaaatcc ttcatactag caatattgag cttaacatca agctcttcag
     3721 ctcctgttcc aagagtgttt tttacgctaa aacttgttgt tatattgagt tttctcatga
     3781 cttgatcaaa attaatctta ttaatttgca aaatttctct ttcctctaaa ggagtttcgt
     3841 tttttccttt taaatttgcc attaccatta attttaacgg caactccaca tcctcatttt
     3901 gtccattagt tttagcttta tatgtaatat taatccgctc ttttggagca taagatccat
     3961 ctgacattta aaatccttaa aaacaaaatt tttagtttaa taattatatt aaaatttact
     4021 aaatttaatc ttgtatcact taattttact ttttgcgttt tcgtattctt cggctagata
     4081 atcttttagt agagttttct ccattaactc tactaagtat atatttaaaa ttttagagtt
     4141 ctttttcatt ccttttgatt caaaaatttt taccatatct agcaaggaat taatattatt
     4201 cataatagaa ttattaaaat tttctttatc aatattcatc agcatttgct caaaatcttg
     4261 taatgtatgt tctttgtcag tttttttact tgaaaaaaaa ctttttttat tttctttgga
     4321 tttaacaaaa tatttataaa cttcttcttt gcagataaaa tcaccatttt gaaaacggag
     4381 aagttcaata gtatcaaatt tagaaataaa atcacttgtt aatattataa gaatgtctaa
     4441 ttgtttattt tttttctttt tttctaaaaa atcacaaaag agttgtacac cctctatcca
     4501 aaaaggattt aaaataagtt catgcataaa acatttaata tgttctatat cattttcttt
     4561 atcagaaagt aatatgcgaa ttatatctgc atcaggtttt cttattttag taattttttc
     4621 attattacat tcaggtaaac acctgatttt tccccacatt gcttgggtga ataaagcgta
     4681 gatattgaga ttattttcat cctcttccaa aagctcaaat gcaagttttt gataaaaatt
     4741 tttatattct ctctcgttta aagagttaat attatcgctt ctaatgttta cagatacttg
     4801 agttacagga gattttggaa gttgtggtgc aacttgagca atttcaattt ttgcaaaatt
     4861 gcaagatagt aaattttcaa attcggaaaa taaagtaata aattgattaa caatctcaga
     4921 tgatataagc acttttgttt tattgtattc ttgaataaaa ttttgaataa aattttgaat
     4981 ttttcgcttt tgagctaata tataagcatt attttcatct ataagttttt ttaaatgttg
     5041 aaaaagaagc aaa
//
LOCUS       DARGED010000109         5010 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.109, whole genome shotgun sequence.
ACCESSION   DARGED010000109 DARGED010000000
VERSION     DARGED010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5010
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.109"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..183)
                     /locus_tag="SFZ84_001465"
     CDS             complement(<1..183)
                     /locus_tag="SFZ84_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203564.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLY"
     gene            complement(248..697)
                     /locus_tag="SFZ84_001466"
     CDS             complement(248..697)
                     /locus_tag="SFZ84_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG8203565.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(825..2045)
                     /locus_tag="SFZ84_001467"
     CDS             complement(825..2045)
                     /locus_tag="SFZ84_001467"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG8203566.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(2039..2863)
                     /gene="galU"
                     /locus_tag="SFZ84_001468"
     CDS             complement(2039..2863)
                     /gene="galU"
                     /locus_tag="SFZ84_001468"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG8203567.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2945..4918)
                     /gene="acs"
                     /locus_tag="SFZ84_001469"
     CDS             complement(2945..4918)
                     /gene="acs"
                     /locus_tag="SFZ84_001469"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG8203568.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     IGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSMLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1613 a          969 c          646 g         1782 t
ORIGIN      
        1 atataaatct aaaaacaaaa tttcacttgc tttaaattga gataaaaaat taaaaataag
       61 tgttttttta ccacaaaatc gtgggccttt tatgataata tttggttttg aaatttgatt
      121 ttttctttca taacttactt caaatttagg gtggttttca taaaaaaaat taagtacttt
      181 caattttatc ctttaaaaaa ggatattata acctagtttg tataattggg gcataaagcc
      241 ccttaaatta cattttgcaa gcaccctgta aagtagcacc tatcatccaa agactttttt
      301 catattttgc aatattttct tgcgcaaaag cagctgttgt ggtatcactt tctttttctg
      361 ctgcttcatt gagtttttta aattctgcta aaagatattc ataatcttgt ttgatcagtt
      421 ctatgacttc aagcggagta aagcaatctt ttgcaacttt tggacttttt gcattttcca
      481 ttaaaacttt ttggcaagtg atagcttttt cgccaagttg taaaactctt tcagcacaac
      541 tatcaaaaag ttctgccatt tcttcataag ctttttctgt gtactcgtgt atagaaaaaa
      601 attgcaaacc ttttacattc cagtgataat tatgaaattt aacccataga tgatgagcat
      661 ctgcttgcat ttgtaataat tgttttgtaa ctgacatgat tgactccttt tttttaattt
      721 ttaaaattat aacataaaat tcttaaataa taattattat taattaaaaa tttttattat
      781 aattttaact taaaattatt atactctttt ttaatgaatt ttgattaaga atttaatata
      841 ttttttaaga tcaactttcc aacttccaca ccaggttgat cataggtgtt aatccctagc
      901 ataacaccgc aagttgaagt aaaaagttca taataataca tcaaatatcc cgcatgccaa
      961 gcatcaagtt tttcaagttc tatcacatca acactcaaat tttcagcgat taaagcgtgc
     1021 atagttgcat tacattgagc gtttaaaagt tcgtgaagat tgactttatt acttaaagaa
     1081 tctaaaaatt taaaatgaat atcagggata ataggtgctt tttgagcgtc tttgattttt
     1141 aaaaaagtta cagttttatt tttaggtcca tccataatga gttgtaaaaa actatgctga
     1201 tctcttgctc caatgagtgc aataggagtt aaacctatac gtttatagcc ttgcttttta
     1261 cctaaacttt cagcaataag ctggatatac cattcattaa agcctttaaa agcatcacta
     1321 tatgaaaaaa gtacattgat attggcattt ttgtgtgtgc aataatgata ggctttttgt
     1381 aaaatttcat cttttttatg agtaaaaaaa tcttcaaaac aagctttagc tccttctaaa
     1441 agagctttgg cattatagcc acaaaaacaa agcggaacta tacctacggc tgaaagtatg
     1501 ctaaaacgac ctcctacatt tgcagggata aaaaagcatt taatacctaa attttcacct
     1561 tcttgatgaa gttttgaatc cttatcggta ataaaaacaa agtatttttt taattcttgc
     1621 atatcaagtt taaaatgttc aataagaagt ttaaaaagcg atacaacttc tatagtacta
     1681 cctgttttgc tgatgattaa aaacaaactt tcctcaagct tgattttttc taaagtctta
     1741 ttaaaagaat gtgaacttgt gttatcgagt ataaaaagtt ctctttggtt gcttttttca
     1801 ttaaaaagca tatcacgcaa ggcttttaca ccacaacttg aaccacccat tcccactaaa
     1861 acgatatttt ttatgtgttc tttgtctttg ataaaagcca aactctcatc gattaaattc
     1921 aaacttgtat caataagatg ataataccct atatctccac tttttacctc atcattaata
     1981 cgatttgcat aagaacttat agtgtgaatt tcactttgct taaaaaaaag tgtattgttt
     2041 aacatttact tttctcgtaa aaataatttg tcgcttctac aaagccttct acacttccac
     2101 aatcaaagcg ttttccttga aatttataag ctaaaaccat accattggtt gcttgagtta
     2161 aaagcgcgtc ggtaagttgg acttcaccat tttttcccgc tttagtattt tctaaaattc
     2221 caaaaatatc aggagttaaa atatatcttc ctatgatagc aagattactt ggagcttcat
     2281 caggacttgg tttttctatc atagaattaa ccatgataag attttcttct acaaaatttc
     2341 cagaaattac tccatagttt gaaacttgct cttttggtac ttccatcaca gctatgatgg
     2401 tgcagcgata tttttcataa atttttacca tttgagccat aacatttaag ccttcttcat
     2461 taacacacaa atcatcagcc aaaattacgc caaaagcttc atcgccaacc aaaggtctac
     2521 cttttaaaac cgcatcacct aagcctttca tttgattttg tcttgtaaaa gtaaaggtac
     2581 aacgattgat caaagagcga atttcatcaa gtaagtattc tttttttgta cctgaaattt
     2641 gatgttcaag ttcataagaa atatcaaaat aatcctccaa agctcttttt ccacgccctg
     2701 tgacaaatcc catattttcc attcctgctt ctaaagcttc atcaactcca taatggatca
     2761 aaggcttggt taagataggt aacatctctt taggtaaagt ttttgttgca ggtaaaaatc
     2821 tcgtcccata acctgccgca gggaaaatac aagtttgaag cataaaaatt tccttttatt
     2881 tttttatcat tatagcttat ttttatgaat tttcatgcaa caaggcaaag ttctttttgc
     2941 cttgttattc aaactctgcc ttagctaatt taacaatggt ttctactact ttagaatctt
     3001 caagtgttga aatatcctgt ttgatttctt cgcctcttgc tatagttctt aaaattcttc
     3061 tcattatttt accacttcta gtttttggca aacctggagt ataaagaatt ttttctattt
     3121 tagctatagg tcctatttct actcttaaaa tgtcattaag ttcttttaaa gtttctatag
     3181 ctccgccaag atcacaactg gatgcaggac ttaaaaccac aaaagcaaac aatgactcgc
     3241 ccttaatcgt atccaaaata ctcactacag ctgattctgc tacacttgga tgtttagcaa
     3301 tagcgctttc aatttcagcc gttcctatac gatgtcctgc aacattaacc acatcatctg
     3361 ttcttcctgt gatggtaata taaccatttt tatcataaaa agcaccatcg ccactaaaat
     3421 atacagcttt tccatctttt ttagcttgag aaaaataact ttctatatag cgttcatcat
     3481 tgccccaaat tccacgaatc atcgaaggcc aaggtttagt tatacaaagc aacccatctt
     3541 caccttcatc ttttttattg ccttcttcat caataacttc tgcaaaaatc cctggcaaag
     3601 gcaaggtggc acaacctggt tttaaaggag tggcgcctgg taaaggcgtg atcatatgcc
     3661 cacctgtttc tgtttgccac caagtatcga ctataggact tttagttccc cctatttcat
     3721 cataaaacca cttccaagca ctaggattga taggctctcc aaccgttcca agcacttcaa
     3781 gcatacttaa atcatatttt cttggctcat taggtgcatc agcatgaagc attcttatag
     3841 cagttggcga agtgtagaat ttgcttattt gatactcttc tatcattctc caccaacgcc
     3901 cagaatttgg ataagtagga gttccttcat gcattatagt cgttgctcca catgctaaag
     3961 gcccataaac tacataagta tgtcctgtaa tccaacccac atcagcacta caccaataat
     4021 tatcataatc tttaatatca aaaacccatt ccatagtcat ttgtgcccaa agtatatatc
     4081 ctgcacttgc atgcataact ccttttggct tgcccgttga tcctgaagtg taaagcaaaa
     4141 acaacaaatc ctcactatcc ataatttcgg gttcacactt ataagactca tttttcacaa
     4201 gttcgttata aacatagtcc cttcctttaa tatattctat aggttcatta ttgcgtataa
     4261 ctataagtac tttttctaca ctttcacacc cttcacttaa agccttatct actgcaggtt
     4321 ttaacatata aggtttgcca cgacgaaaag caccatcagc cgttactaca agtttagctc
     4381 ctgcatctat aattctatct cttaaggctt caggagaaaa ccctccaaat actacactat
     4441 gaatagcccc aatccttgca caagctaaca ttactatagc tgtttctgga atcataggca
     4501 tataaattac aaccctatcg ccttttttta ctccgaattt tttaagcaaa ttggccgcct
     4561 tgcaagtttc atgcaataat cttctataag tataaacttc ataatcccct atttcacctt
     4621 caaaaatcaa agcagcttta ttgcgtcttg ttttcatatg acgatcaaga cattgataac
     4681 ttacatttaa agttccacct tcaaaccatt tataaaatgg agctttatcc tcatttagca
     4741 ctcttgaaaa aggcgaaaac cactcaatct tctcaaatgc ttgtcttttc caaaaacctt
     4801 caaaatcttc cttggcttca tcgcataaat catagtattc acataaattt tttatacgag
     4861 cattacgaga aaattcttta cttggcttaa aaagctcttg attattttga ttaagcataa
     4921 aaactcctta tatggttatt tttaaacatt atataagagt ttatttgtat gaaatacaaa
     4981 tttaaaaaat aattaagata aattttataa
//
LOCUS       DARGED010000110         5005 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.110, whole genome shotgun sequence.
ACCESSION   DARGED010000110 DARGED010000000
VERSION     DARGED010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5005
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.110"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..460
                     /locus_tag="SFZ84_001470"
     CDS             <1..460
                     /locus_tag="SFZ84_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8203569.1"
                     /translation="APLHFNIAIILSSLTNLNLIFMNFFELFDNKIYLRFEYDNIISD
                     EQKLKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAY
                     LMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            465..2261
                     /gene="glmS"
                     /locus_tag="SFZ84_001471"
     CDS             465..2261
                     /gene="glmS"
                     /locus_tag="SFZ84_001471"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG8203570.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFELYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2264..>5005
                     /locus_tag="SFZ84_001472"
     CDS             2264..>5005
                     /locus_tag="SFZ84_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG8203571.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     "
BASE COUNT         1771 a          619 c          939 g         1676 t
ORIGIN      
        1 tgcaccactt cattttaata ttgccattat tttaagttct ttaacaaatt taaatcttat
       61 tttcatgaat ttttttgaac tttttgataa taaaatttat ttaagatttg aatatgataa
      121 tattatcagt gatgagcaaa aactaaaact ttgcgagctt ttaaattcaa atctttctgg
      181 ttttaatttg aaaaaaatta aaaagccaat cattaaaaaa gatgagttaa aattagactt
      241 aaactattct aaaatgtatg ccaaattagg tcttaatacg aaagatcagc agggtttaat
      301 ggcgtatttg atgaatgttt ttaatgaact tgaacttgtt ttatgtgcag caaaaattca
      361 aaccataaga caaaggacgc gtaatatttt tatttttcaa aagaatgaaa aattagaaca
      421 tagcgagcaa aagttagtta atttattaat aagtgagtaa aaaaatgtgt ggaatcgtag
      481 gttatatagg aaataatgaa aaaaaacaaa ttatactaaa tggacttaaa gaattggaat
      541 atcgtggcta tgatagtgcg ggtatggcag tgatgcaaga aggagagctc agttttttta
      601 aagctgtagg aaagcttgaa aatttggcga ataaatgcac ggattttgaa agtcaaggtt
      661 atggttttgc tataggtcat acaagatggg caactcatgg taagcctact gaaatcaacg
      721 cacatcctca tttaggacag tattcttgtg tgattcacaa tggtattata gaaaattata
      781 aagaaatcaa agataaactt gaaaaagaag gcgtgagttt tttaagtcaa accgatacag
      841 aagttattgt ccagcttttt gaattatatg caagaaattt gggagttttt gaagcttggc
      901 aaaaaaccat caaagaactt cgcggtgctt ttgctacttt gttagtaaca aaaaaagatc
      961 ccaatcatgt gtattttgca aaaaatgctg ctcctttgat tatcggtaaa aatgcaaata
     1021 aagaatggta tttttcttca ggtgatgcgc ctttgatagg aagttgtgat gaggtaatgt
     1081 atcttgaaga tttaagcttg ggatacgcga gtaaagatga gcttgtcgtt tatgaaaatg
     1141 atattttaaa atcactttgt ttttctaagc tttcaggcga taaggcttat gcaaaaaaag
     1201 acggctttcg tttttttatg gaaaaagaaa tttatgaaca aagtcgcgtg atgagtgaag
     1261 ttttaatggg gcgtattcaa ggcgatgaag tcgtttttga tgagctaaac aatgaagatt
     1321 taagtcaagt agatgaaatc acgctttgtg cttgtggaac aagctatcat gctgcaatgg
     1381 caagtgctta tttgtttgaa agaattgcta aagttaaagc taaagtagaa attgcaagtg
     1441 aatttcgata ccgtgaagca attataaaaa aagattcttt atttatcgtt atttctcaaa
     1501 gtggagaaac agcagacact ttagaggctt taaagattgc aaaagagcag ggtgctaaga
     1561 cttttgcaat ttgcaatgtg gataattcta atatagtgcg tttagcacat ctaagtcttt
     1621 taactcgtgc gggcatagaa aaaggagttg cttcaactaa agcttttgct actcaggttt
     1681 taacactttg gatgcttgct atttttatgg cacaaaaaag aaatttaaat gtttctgctg
     1741 aaattaaagc acttttgcat actccaaatt gcgtgagtgt aaaacaggct ttacatgaaa
     1801 aaattcatcg tttatccaag cgttatttag atggacatgg ctttttcttt ataggcagag
     1861 atgtgtttta tcctttggct ttagaaggag ctttgaaact taaagaatta tcttatcttc
     1921 acgctgaggg ttatcctgca ggagagatga aacatggccc tattgctttg gctgattcta
     1981 agctttatac tatagcttta atgccaaagc acatgcttta tgaaaaaaca aaatcaaatg
     2041 ttgaagagct tattgctagg gattctacag tgcttagcat ttcaccttta gaatttgatt
     2101 taagtgatga ttttataaaa accaatgagc aagatcatta tatgtgtgaa ttttttgaaa
     2161 tgatggtcat tactcaactt ttggcgatgg aaatttccat aagacttggc aatgatgtgg
     2221 atatgccaag aaatttggct aaaagcgtaa cggtagaata gaaatgaaaa aatttttttg
     2281 tttaacttta gtttgtaaac tttttgcttt aagcgaattt gaacttcatc atattgataa
     2341 agtacataag ctagggtata gtggagatac tattataata ggtgtagccg atgatgcttt
     2401 taatcaagat catattagtt taaaggataa gattttaaag tctacttatc ctactgatac
     2461 agctgggaaa cagcttatac ctgatttgaa aaaatcaaca cacggaagtc atgtagcagg
     2521 tatagctgtt ggagcaaaga taggcgatag caaaccttat ggagtggctt atggggcaaa
     2581 attttatgga gctggggtgt ttccaaatgg ctcttacact caaattcctg atatttataa
     2641 ttttttcaaa gatgtgagta ttattaataa tagttggggt attaattttt atccttattt
     2701 taatcttaag gcttcaaatt ctggattagt agattgtact caaactaatc aagggacaag
     2761 ctataatatc tgtaatactc ctttggaata tgttatgaaa gcagataagg ttgctaatga
     2821 tatgatgagg cttagcaagg acaagggagt attaaatgta tttgctgctg gtaatgaagg
     2881 aattcttagc cctgctttgc atgcgatttt accaagttat gatgaatctt taagagcttg
     2941 gttggctgtt ggagctttgg atgcaaatga gattacttta gaatcagatg ggactttaat
     3001 aattaaaagt caaggtttgg ctgattttag taatggtttt aagggagcta cgaatttttc
     3061 tttagttgct gctggagtaa atattaataa tgttgattca agcactaatg ataagtttac
     3121 aaaaaaaagt ggaacttcta tggcagcacc tatggtaagt ggaacagcgg cactggtcaa
     3181 gcaaaatttc ccctttttgg atggtaagca aattgctgat atactgttaa gtacagcaaa
     3241 taaaaattat aaggctccaa aatttactgt taaacaagta accgatggaa caaatcaacc
     3301 taaatttctt attgtgtata tttcgcaaga tccgcctagg atagaagatg aaataaaacg
     3361 ggatttaaaa cagctttaca atggaataca agttcaagtt aatggacaat ggattgatta
     3421 tagtgattat atttgggata atagagatag tgcgcagtca caaaaactta atacttctac
     3481 tattagttct attaatggag tagttagagt tgagaaagaa gaattatttg gacaaggaat
     3541 tttagatgca caaaaggcgt taaaaggact gagtatttta gatgcaaaca gactcagtga
     3601 tcaggatgta ttaaaatatg agcaagaacc taatacagct tattatacta taaacactgc
     3661 aggttatgat gctgaatttt ctaatgatat tagtcaaaga aaatgggatg aaagtactca
     3721 tttatcaagt gctattaata aacctacaca tttagctaat cttaacatag gattatctaa
     3781 agaaggtgaa ggtattttga ttatcagtgg tcaaaatact tatgagggtg caactttaat
     3841 caaacaagga gaattaaagc ttaaaggaaa agttaaaaat aatgcttatg tagaacaaaa
     3901 agcaatatta agcggtaatg gtattgtagg gcaaaattta aacaataaag gcatagttag
     3961 acctggaaat gaagatttga atgatttaac cgtgcaagga acttatactc aagaaggagt
     4021 tgactctaaa ttgcaacttg attttggtaa ttataaaaat tctaaactga ttgcaaaaac
     4081 ttatgatatt aagagcggga atttagaata tattccttta cctaaatact atatcttaaa
     4141 taagccagtg aaaattaatt taggagattt ggaaaaaagt ttatcatctt ttaatcatgt
     4201 tttgatacaa aatacctatg ctttaaattt tgattttgtt ttaagtgatg atttagtgag
     4261 tattaataaa accttaataa aacctaattt aaagccaaat gcttacgaaa ttcctaatac
     4321 aagcttggga aatgctttaa gacaattgcg atctagggca gacttgagtc agacttatca
     4381 ggaatttttt gcttctttag ataatggaat agatgtaaag actaaattaa atagaataga
     4441 aggttcaggg tatttaagca cttttagtaa tcataatcaa tctaatttaa tgcaaaataa
     4501 tatgttattt acccttcatc ctcttaatat taataatttt gcacaaaaca ataatatctt
     4561 acttgctagt acttatttac ctagaatttt tagcaatgaa gaatattttt ggcatcttac
     4621 tccaagttat aaatactata aagataaaga tttttcaggt caaaaaacag gtgctaatat
     4681 ctctttagga gaaaatttct catcaggctt tttagcttat gctttatctc tttctagcgc
     4741 taaatttaat tttaataatg gtagtgattt gaagagttat aacatggatt tattgcttaa
     4801 ttataaccat gatttagatt ttataaaaat attaagtgga ttaggtatag gtgtaggatt
     4861 taatactctt aatcgttttg tagtagagca gccaattgaa ggcaaatata aaacattgca
     4921 aacttcagcc cagcttggtg taactaaaga tattatttta ggtcaagatt ttatttttaa
     4981 tcctttaatg tattttacac atagt
//
LOCUS       DARGED010000111         4860 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.111, whole genome shotgun sequence.
ACCESSION   DARGED010000111 DARGED010000000
VERSION     DARGED010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.111"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..239
                     /locus_tag="SFZ84_001473"
     CDS             <1..239
                     /locus_tag="SFZ84_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203572.1"
                     /translation="FFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELG
                     IFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF"
     gene            complement(236..966)
                     /locus_tag="SFZ84_001474"
                     /pseudo
     CDS             complement(236..966)
                     /locus_tag="SFZ84_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
     gene            complement(941..1690)
                     /locus_tag="SFZ84_001475"
     CDS             complement(941..1690)
                     /locus_tag="SFZ84_001475"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG8203573.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(1687..2292)
                     /locus_tag="SFZ84_001476"
     CDS             complement(1687..2292)
                     /locus_tag="SFZ84_001476"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG8203574.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            2353..3342
                     /locus_tag="SFZ84_001477"
     CDS             2353..3342
                     /locus_tag="SFZ84_001477"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG8203575.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            3913..4776
                     /locus_tag="SFZ84_001478"
     CDS             3913..4776
                     /locus_tag="SFZ84_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203576.1"
                     /translation="MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGL
                     VFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILN
                     LLVLTFSFILEVISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIW
                     QGLSVFGSHLLFIPDFMVDQPPEIIYGSLNIILSLCYIIFAFLFFKILIQITKEKLFY
                     LIFAFYVCIKILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWL
                     MLKGQKNVKIC"
BASE COUNT         1527 a          652 c          762 g         1919 t
ORIGIN      
        1 atttttttta taacaaatac tttaactttt atagccaaat atctaaaatt gcttatattt
       61 caagtccaac tttagatatt gatttgatta aattacgtgc taagaaaatt ttaccaaagg
      121 ctttagaact tggaattttt catgtgattt ttatcactct ttcaagcgag gatagttttt
      181 ttgagcaagg ggttaaattt gaagtcatat cttttgataa attttcactt ggattttagg
      241 tgttgtttga gtttgtatcg tatttttcaa ggttgtatcg tttgatgatt tttgtaataa
      301 gattgatata atatcccttg cgttcagaat aagaatctaa agttttaata gcctctagtc
      361 ctgttatctc tttgccttcg cttgcaaatt tagctcttgc atcgcgaaac ttttcataag
      421 caaaatgacg atttaaattt aaaacataag agtaaacact atcttgcaga ctatcaaaaa
      481 tcttaatttt atgtttttta tctggatgtc ttaaatcagg aattaaacct ttctcacccc
      541 aagtccattc tccaaaaaga ttatttgctt ctcttgcgaa gcgacttgta cctgtagcac
      601 tttcaactaa agcttgggct atacccatgg attttggaat tttttgaata cgttttttat
      661 attctgcaaa atcataaaga ttttcaatgc gatatttgtt ttttatcgtg ataagttttt
      721 caagatttgt ttgatttgaa gtcctaaagc ctgttttgta agcatcttta aaaaaggctt
      781 cgataaaagc tctttcttgt tcaatttttt taaagctttg atcaaacatt tcattcattt
      841 ttataaaaaa atttgtcttt tttgatctat atcaagtttg taatattcct ctccaaagcc
      901 attttttaga tcatcagcaa aaagtgggat tagaaaaaga ctaagaaaaa ttataattgg
      961 cttcaaaaca atactttacc tttccttcaa aaaacaattc ttcattttta tatgtaaacc
     1021 caacctcttc accactttta ggagttattt taactttatt ttgtactttt ttatttaaaa
     1081 atgccagata aaaacaagcc cccattcctg tgccacaagc taaggtttca tcttcaactc
     1141 cgcgttcata ggtacgaact tttaaatgat tttcatctaa aatttttaca aaattaacat
     1201 tggcattata tttttgtctc attttttgac aaagtattgt atcaaattca tctaaatttt
     1261 gacaaaaatg cactagatgt ggaactccag tgtcgcaaag ttgccaagtt tttcctaatt
     1321 cttcaaaagt attttgcacg ctttttattt tgcctaaaga tacttcaact ttatcttgat
     1381 ttacctttgc ttttattatt cctgcaccgg ttaaaaaact catgttagga tttattttgt
     1441 taatatgatg tacaaaatgt gccgcagccc ttgagccatt gccacacata gcagcccttg
     1501 agccatcgtt attataaaat tcccattcaa agtcgtattt ttcatgaggc aatatcacga
     1561 taaagccatc cccacctatg ccctcataac gattgcaaag ttctttagct aaagcacttc
     1621 tatcttcttt tctatcagca tttgttatga caaaatcatt cccacttgca caatatttat
     1681 aaaatttcac atttttcctt tagaaatttc ttgtattact ttaacacatt cttgcctaaa
     1741 atcgacataa gaattagtat ttttaatgat aaaatctgct tttttaagtt tttcttcaat
     1801 atctatttga gaatcaagtc tcacttttgc agcttctaag ctgagcttat ctctttgcat
     1861 gattctttta aggcttaatt ctttaggtgt gtaaattaca atgactttgc ctaaattttc
     1921 ataagcaccg ctttcaaaaa aaagaggaat ttctacaaaa aaagctttat tttctttatc
     1981 tagaatttgc atttgttcta aaattttagc tcgaatttta ggatgagtga aattttctaa
     2041 ggttttttta gcttctttgt tgttaaaaac aatttctcca aggatttttc tatcgatttt
     2101 cttttctttt gtgagtaaat tttttaagtt aaagggagaa aaaatctttt caagttctaa
     2161 agcattttca tctaaaattt tatgagcaat tttatctgca ctaatgcttt taaagcctaa
     2221 agaattcgct atttctataa aagtgctttt accacaagca attgaagcgg ttacaaaaaa
     2281 agcatttttc atcttatgcc ttattaaaac ttttttcgtt aaaatacctt tttagttctt
     2341 aaaggaaaat aaatgaaaat ttcatatgaa gatgcaggcg taagtataga taatggaaat
     2401 gcctttgtag aggctataaa acctttggtt aaagaaactt ttaatgataa tgttgtaggc
     2461 ggaattggtt cttttgctgg tgcttttaga atgccaagtg gttttaaaaa gcctgtgatt
     2521 ttaggtgcaa cagatggtgt tggtaccaag cttcgcttgg caattgatgc taaaaaatat
     2581 gatactatag ggcaagattt agtagcaatg tgtgtgaatg atttgatttg taattttgct
     2641 acgcctttgt ttttcctaga ttattatgct acagccaagc tcgaagtaga agtagcaaag
     2701 gctgttgtat caggcattgc caagggatgt aagatggcaa attgtgcatt aatcggcgga
     2761 gaaactgctg aaatgcctgg aatgtatgca aaagatgatt ttgatcttgc gggttttgca
     2821 gtgggtatgg ctgaagaaga tgagatcgat agaagtaaat ttgttaaaaa tggtgatatt
     2881 ttattggcac ttcctagttc aggacttcat tcaaatggtt attctttagc tagaaaagta
     2941 ctttttgaaa gtttaaaatt aaaatttgat gacaagatag gggataaaaa tttaattgat
     3001 attttattag agcctacaag gatttatgtg cgtgattttc ttacattaaa gccttatatt
     3061 agtgctctag ctcatattac agggggtggt ttagtagaaa atttaccacg cgttttgcct
     3121 cgtggtatgg gtgcaactat acgcaaacat catcttaaaa ctcctgaaat tttttatact
     3181 ataggacagg ctgtagaaga aagcgaaatg tatagaagct ttaacatggg agtgggttta
     3241 gtaatggttg tagatccttc taatgtaagt aaggttttag aaaattcaga tgcctttatt
     3301 atcggcgaaa tttgcattaa tgaaggtatt gttttagagt gaaaacaaat tattatgatt
     3361 atttatgtgc taaaatgtat gtaattttgc ccataaaagc ccataaagac aaactaaaat
     3421 tttatctttc ttatgtaaat aagaaagata aaatttttag agttaatgtg tggaagtggg
     3481 cggttttgat aaaaattgcc aaagatgata aaacgaaata tttttgttcg aatgtattaa
     3541 ataaagggta aaatgcacaa tttaaatgaa gctttgtttc aaaaaaagat aaaagaaatt
     3601 cgcttaaaag caatagcgag tattatttgt gggtttttag gtatcattcc ttatcttgga
     3661 gttttatttg ttcttgcgag ttggatttta ttttttattg tgctttatga tttaaaaatc
     3721 tatggtggtg ctaaaaattt gtttaagaat ttccttatta gtgtagggat tggatttttt
     3781 ggcattcttg ttaatacaag tattttattt gcaatgctaa agcctagaac tggcattttt
     3841 ggtgggcttt attttaatca agataatatt tttatggcta ttgctatatt tttagtatta
     3901 cattttgcta ttttggcttt aatttttcct tttttgaaag ctttttacta tgaaattgct
     3961 agaacaacaa agcaaaagta tttcacttat gcttttaata ccttttattt agggcttctt
     4021 actttgatta tcggcatagg cttggtgttt ttgctagcaa gtttggtttt ttggatttta
     4081 gcgtgggtca aatttaaaga atttgatgag caagaacttt caaatttaga agaaagattg
     4141 gcaaaagcac aaaaaaaggt ttttgatttt gatttaaaat ggattaaaat cacaatggct
     4201 tcatttataa ttttaaactt gctcgtttta acattttcgt ttatattaga agttattagc
     4261 tttgaagatt ttaggtttta ctacacaaaa aaaactttat tttacacagc cataatccta
     4321 gctttgctta gtgtgttttt gttttgtaaa aagataaaaa attacaaact ttttatttat
     4381 tttttcatat ggcaaggttt aagtgttttt ggtagtcatc ttctttttat tcctgatttt
     4441 atggtagatc aaccaccaga aattatatat ggaagtttaa acataatatt aagtctatgc
     4501 tatattattt ttgctttttt attttttaaa attttgattc aaattacaaa ggaaaaactt
     4561 ttttatctta tttttgcatt ttatgtttgc ataaaaattt tgataatatt aattttcttt
     4621 atttttatga tggttgataa ctattatata tttacaaaaa gtcctataaa gatgctcata
     4681 gataattata aattactttt tcaagttgtt tatttcgttt catttttaat tgtttggctt
     4741 atgcttaaag gacaaaaaaa tgtaaaaata tgttagaatg atgaaaaaat actattttac
     4801 gtagatgttt attaggatat attcgtatgt cttaaagctc tttatggggt gttaagtaat
//
LOCUS       DARGED010000112         4859 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.112, whole genome shotgun sequence.
ACCESSION   DARGED010000112 DARGED010000000
VERSION     DARGED010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4859
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.112"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..415
                     /locus_tag="SFZ84_001479"
     CDS             <1..415
                     /locus_tag="SFZ84_001479"
                     /inference="COORDINATES: protein motif:HMM:NF024565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8203577.1"
                     /translation="TFRIRRNENYISHIDIMKEDEILNDYQAYWQILKDYKEGKIHAI
                     LIPNTMRNILEYFLGFIQKDTIDIIKKIENEDKEKKFEAFCRYINRESHSFMGNMSDV
                     KEINIDIFFEAFKKVFEYLGHLEHYDIMMTKGNQQ"
     gene            412..3327
                     /locus_tag="SFZ84_001480"
     CDS             412..3327
                     /locus_tag="SFZ84_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG8203578.1"
                     /translation="MTNYQEKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFEN
                     FLQATQSVALEELKKRCGQNYKKELFDRIFSQIKTKGIVKALQGYVEIKGIKIYLAFA
                     KPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQ
                     NVFHAIKQYKKDRNPKEAIFNYTIVHFALDHDLCYMSTKLDQDATTFLPFNLGLNNGS
                     GKIGLANGAGNPPSDGIKTAYLWEKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQ
                     FDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLEKNIFDSIIVV
                     TDRKVLDSQIRENVKSFSQTKNLVEAITHGSKQLKNALEEGKKIIITTIQKFPFILDE
                     IKTLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQS
                     NASYFAFTATPKPKTLEMFGMPCDVNGEQRFIPFHLYSMKQAMEEGFILDVLKGYTTY
                     KSYYKIISCTNDNPKYDKKRASTKLKAYVQNNIKTIEQKSQIMCEHFFQNSFKKINGK
                     AKAMIVTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESGLNGFAE
                     NVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNK
                     ENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEEIDDF
                     ANAILRKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDI
                     ELEKLYILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPS
                     FADGSSKSVEAELEELSNIIKDFNNKYANIDFNESDKIAKILYDIKDDIAKNERIRET
                     FSKSDIQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIANTMFNMVCNDF"
     gene            3354..4385
                     /locus_tag="SFZ84_001481"
     CDS             3354..4385
                     /locus_tag="SFZ84_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8203579.1"
                     /translation="MFVSVDFFKTFDISNNERLKAKKVQGKKYEIFLNENEQSLITPK
                     VSFKEILRYYYLYPKNAIPSFKLPFFKPDLSDFSTPHITWLGHSSLFISFKEYKILID
                     PIFNTHASPISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSVKALKEKARF
                     FITPLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWA
                     SFVMEFLSVDKRVFFSADGGYFTHFKKIAEYFGDFDLACLESGQFNIAWPYSHSFPEQ
                     ILKEAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKF
                     KQDFWWKEE"
     gene            4455..4796
                     /locus_tag="SFZ84_001482"
     CDS             4455..4796
                     /locus_tag="SFZ84_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8203580.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
BASE COUNT         1898 a          633 c          819 g         1509 t
ORIGIN      
        1 tacttttaga attagaagaa atgagaatta tatatctcat atcgatataa tgaaagaaga
       61 tgaaatttta aatgactatc aagcttattg gcaaatttta aaagattata aagaaggtaa
      121 aattcatgct atattaattc ctaatactat gagaaatatt ttagaatatt ttctaggttt
      181 tattcaaaaa gatacaattg atataataaa aaaaatagag aatgaagata aagaaaagaa
      241 atttgaagct ttttgtcggt atatcaatag agaatcccat tcttttatgg gtaatatgtc
      301 agatgtaaaa gaaatcaata tcgatatatt ttttgaagca tttaaaaaag tatttgaata
      361 tttgggacat cttgaacatt atgacataat gatgactaaa ggaaaccaac aatgactaac
      421 taccaagaaa aagatttaga aaatttcata gagtcttact tgttagaaaa ccatgcctat
      481 atcaaaagaa caaatgaaaa ttacgataaa aatttatgtt tagatgtaga gctttttgaa
      541 aattttttac aagctacgca aagtgtagca cttgaagagc ttaaaaagcg ttgcggacaa
      601 aactataaaa aagaactttt tgatcgtatt ttctcgcaga ttaaaaccaa aggcatagtt
      661 aaagccttgc aaggctatgt agagatcaaa ggcatcaaaa tttacctagc ctttgccaag
      721 ccaaatacca atgcaaacga agaaagcgtg aaaaaatacg agcaaaacag cctttctatc
      781 atacgccagc ttcactatag cacgcaaaat aaaaactccc ttgatatagt gatcttttta
      841 aatggcttgc ctcttatcac catagagctt aaaaaccatt tcacaggaca aaatgtcttt
      901 cacgctataa agcagtataa aaaagacaga aacccaaaag aagctatatt taactatacg
      961 atagtgcatt ttgcgctaga tcatgatctt tgttacatga gtacgaaatt agatcaagat
     1021 gcgactacat ttttaccttt taaccttggt ttaaataatg gtagtggcaa aataggccta
     1081 gcaaatggag caggtaatcc gccaagtgat ggtataaaaa cagcttattt gtgggagaaa
     1141 atctttaaaa aagatacttt gctaaattta ttttttaatt ttgtgcaagt tgtaaaaaag
     1201 aaaaatgaag aaatcatcat atttcctaga taccatcaat tcgatgtagt agaaaagcta
     1261 ctcgcccatg caaaagaaaa cggcacaggg caacgctact tgatccagca tagtgcagga
     1321 agtggcaaga gtaattctat atcttggctt gcacataatc tcgtaagctt gcatagactt
     1381 gaaaaaaata tctttgattc tatcatcgta gtaaccgata gaaaagtgct tgatagtcaa
     1441 ataagagaaa atgtaaaatc cttttcgcag acaaaaaatt tagtagaagc tatcactcat
     1501 ggaagcaaac agcttaaaaa tgctttagaa gaaggtaaga aaatcatcat cacaaccata
     1561 caaaaatttc cttttatttt agatgaaatc aaaactttaa aaagcaaaac ttttgctatc
     1621 attatcgatg aagctcattc aagtcaaagc ggaagcaatg ctcaaaaaat ggcagaagcc
     1681 ataagggata aaagcggcga tgaaagtcaa aatttagatg atgaaatttt agaaatcata
     1741 aaaaataaaa aactccaaag taatgcttct tattttgcat ttaccgctac gcctaagcca
     1801 aaaaccttag aaatgtttgg tatgccttgt gatgttaatg gagaacaaag gtttatccct
     1861 tttcatcttt actcgatgaa acaagccatg gaagaaggat ttatacttga tgtactaaaa
     1921 ggttatacaa cctataaaag ttattataaa atcatatctt gtacaaatga taatccaaaa
     1981 tacgataaaa aaagagcaag cacaaaacta aaagcctatg tccaaaacaa tatcaaaaca
     2041 atcgaacaaa aatcacaaat catgtgtgag cattttttcc aaaatagctt taaaaagata
     2101 aatggtaaag caaaagctat gattgtaaca agctcaagag aaaatgctgt aaagtattat
     2161 cttgttttta gggaatattt aagaaaaaat tatccacatt ttaaagccat tgtagctttt
     2221 tcaggtgaag taaatttaga aggtgaaatt tatagcgaaa gtggtttaaa tggttttgcg
     2281 gaaaatgttt taaaagatga gtttaaaaaa gatgagtatc gttttttaat cgttgcggaa
     2341 aaataccaaa ccggatttga tgagccatta ttacatacta tgtatgtgga taaagcatta
     2401 agtggggtaa gtgcagtaca aactctatca agactaaacc gaacttgcaa aaacaaagaa
     2461 aacacttttg tgctagattt tgtaaatact catgaagata tagcaaaatc ttttagtgtg
     2521 ttttatgagc aaacttattt aagtgaagcc acagatgata atagaatttt tgatttaaag
     2581 gcaaatctaa atgagtatga aatttatacc caagaagaaa tagatgattt tgcaaatgct
     2641 attttaagaa aagaaaaaga aaatatcatt catgcaaaat tggacataat gctagataga
     2701 tttaatcaaa aaagtgatga tgaaaaatta gatttttata ataaagcaaa aacttatctt
     2761 aaagagtatt cttttcttgc acaaatattg ccttatgaag acatagagct tgaaaaactc
     2821 tatatattgc ttaaaaaact tgctagtaag atcatcttgc ctaaatcaga ggatttagct
     2881 aaaggaattt tagataatgt ggattttgat agttatcgct tacaacttga taaaacacaa
     2941 gacatcgttt tacaaggaaa tggagagcta aagccttcgt tcgcagatgg ttcgagcaaa
     3001 agtgttgaag ctgaattaga agaactttca aacatcatca aagattttaa taacaaatac
     3061 gcaaatatag actttaatga aagcgataaa atcgctaaaa tcttatacga tataaaagat
     3121 gatatagcaa aaaatgaaag aatacgtgaa acttttagca aatccgatat acaaaattct
     3181 cgtatcgagt ttgatgcgct tttaaaagat aaaattcaag atatcttgga gttaaattta
     3241 gaacttttta aacaatttaa tcaaaatata gaatttaaag acaagatagc aaataccatg
     3301 tttaatatgg tttgtaatga tttttaaagt ataaaattgt caaaaaagga taaatgtttg
     3361 tgagtgtaga tttttttaaa acctttgata tttcaaataa tgaaagatta aaagctaaaa
     3421 aagtgcaggg taaaaaatat gaaatttttc ttaatgaaaa tgagcaaagt cttataactc
     3481 ctaaagtgtc ttttaaagaa attttgaggt attattatct ttatcctaaa aatgccattc
     3541 cttcttttaa attacctttt tttaagcctg atttgagtga ttttagcacc ccacatatta
     3601 cttggcttgg ccattcttcg ctttttataa gttttaaaga gtataaaatt ttgattgatc
     3661 ctatttttaa cactcatgct tcgcccattt cttttatcaa caaggctttt aaaaatgctc
     3721 ctgtttataa tataaatgat tttaatgaaa tttttgctgt gattatcacg cattcgcatt
     3781 ttgatcattt agatgctaag agtgtaaaag ctttaaaaga aaaagcacga ttttttatca
     3841 cacctttaaa agtgggaaat tatctaaaaa gctatggggt gagcgagaaa aaaatcatag
     3901 agcttgattg gtggagtgga atagaatttg gtgatttaaa aatcattgca acacctgcac
     3961 agcacagttc aagtagggga gatggtaaaa acaaaaccct ttgggcttct tttgtgatgg
     4021 aatttttaag tgtagataag agagtgtttt ttagcgcaga tggagggtat tttacgcatt
     4081 ttaaaaaaat agctgagtat tttggagatt ttgacttagc ttgtcttgaa agcggacaat
     4141 ttaatatcgc ctggccatat tcacactctt ttcctgagca aattttaaaa gaagcaaaag
     4201 atcttaatgc aaaagctgtc atgcctatac attgggggag atttttagca ggaactcatg
     4261 cgtggaatga ggtggtaaaa tttctttatg aaaatttaga tttacccctt atcacaccaa
     4321 aaatgggcga ggcttatgaa gtaggagcta aatttaaaca ggatttttgg tggaaagaag
     4381 aataaattaa cacaagttta taatttatat tttggctttt gctatagttt tataaaacta
     4441 aaaaaggaga ttttgtgaaa atcattcaat ggaatggagc agaatttagc ccaaaagaag
     4501 tgaaaatcaa tgttttaatt gacaatgaaa aaggtaaaga aattcaaatt ttattagcta
     4561 aagatagcgt gatgaaagag cataaagctc cttttgctat acatgttcaa gttttaagcg
     4621 gtaaaatttg gtttgaagtg gaaaaggaaa aatttgaatt aaatgtttta gatatgataa
     4681 gcctagaggc aaatgtagcg cattctttag gtggattgga aaattctata ataagattga
     4741 gtttaaataa atcagatagt gttcaaaggg taaatgctgt gcttaaaaag ccttgatttt
     4801 attttgattt tataaggttt taatttgctt aaataattct aggctttaac ctagaatta
//
LOCUS       DARGED010000113         4705 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.113, whole genome shotgun sequence.
ACCESSION   DARGED010000113 DARGED010000000
VERSION     DARGED010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.113"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            256..1164
                     /locus_tag="SFZ84_001483"
                     /pseudo
     CDS             256..1164
                     /locus_tag="SFZ84_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1198..1839)
                     /locus_tag="SFZ84_001484"
     CDS             complement(1198..1839)
                     /locus_tag="SFZ84_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8203581.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLTNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1928..3335)
                     /locus_tag="SFZ84_001485"
                     /pseudo
     CDS             complement(1928..3335)
                     /locus_tag="SFZ84_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3423..4232)
                     /gene="dsbI"
                     /locus_tag="SFZ84_001486"
     CDS             complement(3423..4232)
                     /gene="dsbI"
                     /locus_tag="SFZ84_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG8203582.1"
                     /translation="MSCIKMKDKCRNFSLSKWQDTREPWLILIIVTIGLACIAHFLFQ
                     EYLFMEPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPTGECGMDTPVVPKNAY
                     NHLNAFQKFFIGTLPDFENGLYSNGWYLIPSLKFMNMPICCLIAFLCCFIVLFAMFIA
                     YVLDKNKPNAKIFALVIVILVLVLKFIGEPKNPNQNIVSLIYLNQVVLRCS"
     gene            complement(4229..4696)
                     /locus_tag="SFZ84_001487"
     CDS             complement(4229..4696)
                     /locus_tag="SFZ84_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide isomerase"
                     /protein_id="HEG8203583.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEALIEITKELSKQK"
BASE COUNT         1653 a          789 c          659 g         1604 t
ORIGIN      
        1 aacgcagttg tctaagtctt ttttttcttg aatgcttaaa tttttcatta acctaacctt
       61 taaaaatatt gcaagatttt attatagcga aaaaacttta tttttgcttt aaatatataa
      121 gttctatttt aaatataaac gaatattatt ttaaggttta aagctttttt cttaaaatgt
      181 aattaggttt tattgacttt ttctaaataa agtcttatac tgaatttaaa ttacgcaaaa
      241 taaggaggga aattgatgaa taaattttct atagttttaa ctttgttgtt atgtggaagt
      301 tgtgctttag ccttagatcc aaatttggaa aaaactaaga gtgcaacagg tattgatctg
      361 cctactgcca aatggttatt ttgggaaata aaattcttaa tgaaacaagc aaatatgtgg
      421 gtccacaagc caaagatcct aaaaaaagat ttgcgggaaa taatctttct tgttcaagct
      481 gtcatgctaa tggtggaagt gtgcaaaatc aatcgggttt tgtaggaatt taggcaagat
      541 ttccacaata taatgcaaga ggagataaag taattacctt ggcagatagg atcaatggct
      601 gttttgaacg ctctatgaat ggcaaaagaa tgcctagtga tacacctgaa atgaaagcca
      661 tgctaactta tatgcaatgg ttatctcaag gagttccagt aggagctaag atagaaggat
      721 agggacttaa gaagatagat ttcatcttaa gagcagatga tcctaaaaaa aggtaaggca
      781 atttatatgg ataaatgtgc cgtttgtcat caagaaaatg gcttagggct taaaaatgag
      841 gatagcacag gggcgtatta tctttatcca ccactttggg gtgatgatag ttataataca
      901 ggaactggaa tgtatcgtct tatcaaagct gcttcttata ttaaagaaaa tatgcctcaa
      961 ggtgcgcctg acttaagtct tgaagatgct tatgatgtag cagcttacat gaattcacaa
     1021 gctcgtccta ttaaagcaaa tagaaataaa gactttccag atagaaaggt taagccttta
     1081 gatatggatg taggacctta tgatgatagc ttttctacaa cccaacatcg ctatggacct
     1141 tatacaaata tgatcaaaaa ataattttaa ggcaattttt attgccttaa aaatttatta
     1201 tttcatatta cttaattttt taactagatc ttctaaatct tgcattgaat tgattgcgct
     1261 tgggttaatt tgatattttc cattaacaac aaaagcaggg gtaccatagg ttttagctat
     1321 atcattagct ctttgaaact cgcttaaaat ttctttagct tttggggtat ttaaaaaatt
     1381 taatacttca tttttattta cattcatagc ctttaaacct atgtcgtaaa attcatctaa
     1441 atttgaaaaa tttctttgct tgtttaaaaa ataagaaaca aaataaacat cagcaagttt
     1501 ataagataaa ctatcagaat aactcgcatc tttaccattt tgctcatctt tgtattgagc
     1561 aaaggcaaaa agctcattca tttctttgga aaattcccca ttcgttaaac ttacaggata
     1621 gagtttaaaa tgtaaatttg gaaaagcttc tctcagtttt tcaagggttc caaatttatg
     1681 atgattataa caatgtatac atttataaga aaatgcttct attacactat tttcagagct
     1741 aggtaaactt ggattaagag taataaaact attatttgct aatgcaaaac ttgaacaaaa
     1801 tacaagcgtt aaaacaaatt tgcaaaaaaa tttacgcata ttatatcctt tagttaaata
     1861 aaattttcaa agataatttt atttaaaaaa aataaataag ccgccaaaat ttattttttg
     1921 gtaattttta ttgattaaca ctaaaaggca ttgcttgata acccgtgcct gaaccgctga
     1981 attgaatttg aaccgaagac tccttagcgc cccagttaaa ttcatcaatt ttaggttttg
     2041 gttctccaag acttacacct ttactaagat taaaagccat tccagcgttg cactataaac
     2101 cataatagaa tctttatctg gttcatatta agttaaagaa gttacaggat aaaaccattc
     2161 attgccattt ttatctacag gttgcaataa atatttttga aattctttat tccacccttt
     2221 atatgcgccc aaacctgcta tatctccaaa tttgtcgctt tcatccattt tggcaagctc
     2281 ttcatcgctt aaagttttac ccgctttgct tgcatctata tttaaacaca ctgcaccttg
     2341 atctaaagct ttgataatgg tacttctata aggatctaaa atctcataca atctccaatc
     2401 atcaacaaca ttaccatcct catctacttc tataatagta tcacacactg tgcgtacatg
     2461 cttactatct tggacgcaaa gataatgccc attttttgca tattgtccat agcatgagaa
     2521 aaaatctata taggcagcag gtaatttgcg attgaaaatt tctcttccca gacatcgtat
     2581 tttacatatc tttgaccaaa tccccaagtt aaagctccat ctttgttttg acgaaaactt
     2641 atcataattc cacgattgta aatattgccc cagttcatta gtttattgtt atcataatac
     2701 catctgattt cacccttggt atcttataat aaagacattt gaatttccat cccattccat
     2761 agcaccacct acaagattat tccatacaga ttatgagtct ttgccagatt attttccagg
     2821 agcattattt actaaatata gcctatctga aaattttgga tccattttta atactttcac
     2881 attttcaaaa agagttcctc tttgatcagt gccttccact tggttctata ctaacccctg
     2941 gagttgcaat tttataaatc tcatgaatga ttttttgact tttactattt gtagatttag
     3001 cataacttac ctttactata agaaggataa agtccaaaaa taggaattcc accataagtc
     3061 ttagccattt tagaattcac attataagag atagtttggc catttggttt aggaacaatg
     3121 gttactttta tatcacttaa aacataggca ttattcatga taatagcggt caaaggagat
     3181 aatccataag gattcatttt aatcataccc atttgtcctt gaatttgcta atctattttc
     3241 actccactag gatcacccat ggccattaaa gcattaggcg caagcagggt agaacacgcc
     3301 aaaagtgcca tgcaaagagt tttgctaagt ctcatgataa atcctttaaa attatttaag
     3361 ccatcctaaa atagcttaat aaaattttaa taatacgcaa caaaaataat ttgttgcgta
     3421 ttttaagagc atcttaaaac gacttgattc aaataaatta aactaactat attttgattt
     3481 ggattttttg gttcgcctat aaatttaagc actaaaacca aaataacaat caccaatgca
     3541 aaaattttag cattaggttt atttttatct aaaacatagg ctataaacat tgcaaaaagc
     3601 acaataaaac aacataaaaa tgctataaga cagcaaattg gcatattcat aaactttaaa
     3661 ctaggaatca aataccaacc attgctataa agcccatttt caaaatcagg tagagttcct
     3721 ataaaaaatt tttgaaaagc attgagatga ttataagcat tttttggaac tacaggggta
     3781 tccatcccac attctcctgt tggcaaaaac caactaggag cccactcatg caaaggtaaa
     3841 ttaaatggat aaataggaat ttcacgacat ccatctacac ctgcaaaagg attttcagaa
     3901 tgaaccactt catgaatatg atttaaagtt agacaatgct ccaagccaag ccaaattcca
     3961 taaaaagcta agctataaga aaaaattttt ataatattat ttgcagggtt gattaatgca
     4021 atcataccac ctatagccat aacaagcata tcaaatctta tatatacaca ttgttcgcaa
     4081 ggttccataa aaagatattc ttgaaataaa aaatgtgcta tacaagcaag tcctatagta
     4141 actataatca aaattaacca aggttcacgc gtatcttgcc atttagaaag tgaaaaattt
     4201 ctgcatttat ctttcatttt tatacaactc atttttgctt gctaagttct ttagtaattt
     4261 caatcaaagc ttcaggattt ttaccatttt cccatctttg ttttttctta aaatatgcat
     4321 taaaataagc ttcagcaact ttatgagtta agctattttt atccgtagga tcaattttat
     4381 ttacaccatc cttaaatgtc gcaaaagcaa aaatttcatt agcttgcctt ccataatctc
     4441 ccatagaact tacaggataa aatttataag ttaaattagg taatttttct ttaactttac
     4501 ccatggtatt aaatttgtga tgatcataac aatgagtaca gtgataagaa aaaatttcaa
     4561 tcaatgaatt atcagcgtta gcaataggat ttttaagaat tacatattct ttaccttcac
     4621 ttaatgcgct agcacttata cctgctaaaa aagcacatac aacaatagat cttgctaatt
     4681 ttactggaaa tttcattacc ctctc
//
LOCUS       DARGED010000114         4545 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.114, whole genome shotgun sequence.
ACCESSION   DARGED010000114 DARGED010000000
VERSION     DARGED010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4545
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.114"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            3..1091
                     /gene="nusA"
                     /locus_tag="SFZ84_001488"
     CDS             3..1091
                     /gene="nusA"
                     /locus_tag="SFZ84_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG8203584.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(1107..2294)
                     /locus_tag="SFZ84_001489"
     CDS             complement(1107..2294)
                     /locus_tag="SFZ84_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203585.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLARLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INNKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     AYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            2368..3414
                     /locus_tag="SFZ84_001490"
     CDS             2368..3414
                     /locus_tag="SFZ84_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG8203586.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYLNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDKEIIDHFE
                     YLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            3414..>4545
                     /locus_tag="SFZ84_001491"
     CDS             3414..>4545
                     /locus_tag="SFZ84_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8203587.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILLRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLME"
BASE COUNT         1766 a          580 c          792 g         1407 t
ORIGIN      
        1 atatggaaaa gatagcagat attatcgaat ctattgctaa tgaaaaaaat ttaaacttag
       61 agaatgtaag agaaaaggta gctaccgctt taatcaatac tgcaaaaaga atttatggac
      121 aagaatatga gttttttgtg gatcctaaaa atttaaatct ttatcaaaaa attaccatag
      181 tagcagataa tgacgagaga ttgcaaaata aaagtgagag ttttatcgcg ttaagtaagg
      241 caaaatcaga agctccagat gttgaaatag gagatgaatt aacctatgaa tgttctttgg
      301 aaaatttagg aagaactgcg gtaaatacct tgcataaaga acttgaatat catatacaaa
      361 aattattaga acaaactatt tttgaaaaat ataaaaacaa agtagggcaa atggtttttg
      421 gtacagttgt tagagtggat aatgaagaaa atacttttat tgaaatagat gaattaagag
      481 cttttttacc gagaaaaaat cgcattaaag gggaaaaatt taaaataggt gatgtggtaa
      541 aagctgtgat acgccgtgtt tatacagata aaggtattaa aatcgaactt agtcgtacaa
      601 gtcctaaatt tttagaatgt ttacttgaag ctgaggttcc agaaatcaaa gatggttatg
      661 tcaatattat aggatgtgct agaattccag gtgaaagagc aaaaatcatt cttcaggcca
      721 atggagcaaa tatcgatcct gtaggtgcta cagtaggtgt taaaggtgta agaattaatg
      781 cagtaagcaa agagcttcat aatgaaaata ttgattgtat agaatttaca aatgagagtg
      841 aaattttaat ttctcgtgcc ttggctcccg ctattgtaaa ttctgtaaaa attgaagata
      901 aaaaagctat tgtaagttta aatagcgaac aaaaaagcaa agccatagga aaaaatggta
      961 ttaatattcg ccttgcttct atgttaagtg gttatgaaat agagctcaat gaattaagct
     1021 catcgcagct aaataatgcc atcagcaatg aagaagcaat gaaaaatctt caagatttgt
     1081 ttaaaattta aaatatttgt gaattttcac aaatattttt tataaaacca cttccaataa
     1141 aatgccgcaa agataaaaat catacccaat aagcctgtaa ttagttctaa actcaagcct
     1201 atttcaaata aaaagcccat aagcattgaa ataatagcgc taaaactaag ataaatcata
     1261 tctgtataag cgatcactct accatgatat gctttgtcag catttttttg tatcatagtg
     1321 taggtgtaag cccaaagtgc tgaggtaaaa aaacctgcac cgattaaacc taaaaaagaa
     1381 atataaaaat taaattgagt taaagcccaa agtataatac caaaaccttg gccaagatac
     1441 atgtaaaata aatttttatt attaataaat ttacttaaaa ccataggtcc tatagctaaa
     1501 gaacaagcac gtaccgcatt taaaaaccct attactaaag cagcagataa aacttcttta
     1561 tattgatgtt gcgctaaaag cgtaaccaag gtttcataag cagttaaacc tataaaagcg
     1621 tgaagcaaga taagatgaaa aattatctta ttgtttaaaa catagaaaaa tccttctttt
     1681 atcatggtaa aaaagcgact ttgtgttttt tgatgaaaat caggaatgct taatcttgct
     1741 aaaaaagaaa tgcctatgag tataagtata cagtcaaata gaaaagcggt tttaactcct
     1801 agaaaataaa taaaaattcc cgcacttgcc atacctgctg tataagaaat cgcccaaatg
     1861 acactgtgca tttcattagc gagtttaagt tcttgaggag ttaaaatttt ggccaataaa
     1921 ctcatttcag cttgaaaata aatcgaagca acacaaagtc ttatgaaaat taaaataaat
     1981 aaaagccaaa gcatactaag acttgtgaca aaaataagac aaaaaataga aattaattct
     2041 atgctaatca tgctgagtaa aagtttttta ggtttatttt tctctactat gacgccatta
     2101 ataggagcaa gtaaaactcc aggtaaaaaa gcaagcatag cacttgtagc tgttgcccaa
     2161 gtaggagcat taagctcaac caaaagggta aaaactcctg tttgagaaaa ccatgctcca
     2221 aaatatacta taaactgaac cgaagctaat attctgatat ttttattatt ttttaatagt
     2281 tcaatgtaat tcataagcga aactatagca taatttatat tttaaatgct ataattattt
     2341 taattatgta aaaaacaagg aaaaattttg aaaagactgg ataaaaaaga agctttagat
     2401 ttattacacc atgcaagttt aacagaactt ggagaaatgg cttataaaag aaaattagaa
     2461 cttcatcctg aaaaaatcac cacttttgtt gtagatagaa atattaatta taccaatgtt
     2521 tgttgtattg attgttcttt ttgcgctttt tatcgccatc ataaagaaga tgatgcttat
     2581 attttaagct ttgaagagat aggcaaaaag atagaagagc ttgaagctat cgggggtacg
     2641 caaattcttt ttcaaggcgg ggtgcaccca aaattaaaaa tagaatggta tgaagaatta
     2701 gtttcttgga taaaagaaca ttatctaaat atcactgtac atggtttttc agcggttgag
     2761 atcgcttata tcgcaaaggc atctaaaatt tcaattactg aagtacttca aagactacaa
     2821 gctaaaggtt tattttctat accaggagca ggtgctgagg tgctaagcga tagggtgcgt
     2881 gatattatcg caccaaataa atgtgataca gctacttggt tagaagtaca tcgccaagct
     2941 cataaaatcg gtatgaaaag tacagctact atgatgtttg gaacggttga aaatgataaa
     3001 gaaatcatcg atcattttga gtatttgaga aaattgcaag atgaaacagg gggatttaga
     3061 gcttttattt tatggagctt tcaaagtgat aatactgctt taatccaaaa acatccagag
     3121 attatgaaac aaagttctaa caagtattta agacttttag ctttagcaag actttattta
     3181 gataatttta aaaatttgca aagttcttgg gtaactcaag gctcgcttat aggtcaactt
     3241 gctttaaaat ttggggccaa tgatttaggc tcaaccatga tggaagaaaa tgtagtaagt
     3301 gccgcaggag caagttatag aatgaatcaa gatgagatga taaggctgat tagaagttta
     3361 ggcgaaaatc cagctaaacg caataccgct tatgaaattt tagaaaggtt ttaatgcagt
     3421 atttagagag taggggtatt aaaatccctt ttatttttga aaaaaattct gattttccta
     3481 ttgttgtttt aaagcttgtt tttagaaatt gtgctagaag ttatgatgaa atagcaggct
     3541 tagctaagat gttttcacgt attttaaatg aaggcgtgga tgataaattt tttaaggatt
     3601 tagaatttag agcgataaat ttagaggcaa gtagtggttt tgaaagtttg gaaatcaatc
     3661 tttcttgctt gaaagaaaat tttgattttg ctttaaagag tttagaaaaa ttgcttttaa
     3721 aaccaagaat agaagaaaaa attttgcaaa aattaaaaat caatgcctta ggtgaacttg
     3781 cgagtaaaaa tagtgatttt gattatttag caaaaaattt actcaatgct caaattttta
     3841 aatgtaaaga atttcaaagt ccaaacgatg gagatgaaaa aagtatagaa actttgtctt
     3901 taaaagattt acaaaatttt tataaaaatt ttattcatct tagtgatttg gttgtgattt
     3961 taggaggaga tttagaagaa aaacaagcca aggaagatct tttaaaactc ttatcaaaac
     4021 ttcaaatagg caaaaaaaat actccaaaaa aatatgagtt aagcaaaaac atcaaagatg
     4081 aaattttgct acgcccagaa agtgaacaag cttatattta ttttgctaca cctttttttg
     4141 ctgattttaa agataaggat ttatatcttg caaaaattgc attatttgtt ctagggcaag
     4201 gaggatttgg ttcaaggatt atggaagaaa ttcgtgttaa aagaggtctt gcatactcag
     4261 cttatgctat gcttgatatg aatatgtctt tttctagagt ttttggatat ttacaaacta
     4321 aaaatgaaag cgctaaagaa gctaaaaaaa tcgtaaaaga gctttttgaa gattttataa
     4381 aaaatggcat gactcaaaat gaacttgatc aagctaaaaa ttttctcata ggatcaactc
     4441 ctttgcgtta tgaaagctta agcaagcgtt tatctatgtc ttttaacgaa ttttatcaag
     4501 gtttaaattt gggatattat aaagaagagt taaaacttat ggaaa
//
LOCUS       DARGED010000115         4503 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.115, whole genome shotgun sequence.
ACCESSION   DARGED010000115 DARGED010000000
VERSION     DARGED010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.115"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..140
                     /locus_tag="SFZ84_001492"
     CDS             <1..140
                     /locus_tag="SFZ84_001492"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203588.1"
                     /translation="DLLEFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIAIC
                     K"
     gene            130..1344
                     /locus_tag="SFZ84_001493"
                     /pseudo
     CDS             130..1344
                     /locus_tag="SFZ84_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920362.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
     gene            complement(1422..1805)
                     /locus_tag="SFZ84_001494"
     CDS             complement(1422..1805)
                     /locus_tag="SFZ84_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEG8203589.1"
                     /translation="MKDTTTQENRKIKGREIQNTIFGEANITKMIESTPEDKAFINDF
                     LSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQSRKDLLNI
                     IAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(1762..1950)
                     /locus_tag="SFZ84_001495"
     CDS             complement(1762..1950)
                     /locus_tag="SFZ84_001495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203590.1"
                     /translation="MFFWSILNALFSQILKTTKDKTMQLRQKARENFEKLLGEVKKDQ
                     LFASDERHYYARKSQNKR"
     gene            complement(1993..2412)
                     /locus_tag="SFZ84_001496"
     CDS             complement(1993..2412)
                     /locus_tag="SFZ84_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8203591.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEVSARSACHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            complement(2524..3645)
                     /locus_tag="SFZ84_001497"
     CDS             complement(2524..3645)
                     /locus_tag="SFZ84_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203592.1"
                     /translation="MKNLNKASSTQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCASIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVSEFWQL
                     LILRAIPAFFHPIYIALALSMVANLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKNANFTL
                     ILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAANFSNG
                     LFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLIL"
     gene            complement(3821..4390)
                     /locus_tag="SFZ84_001498"
                     /pseudo
     CDS             complement(3821..4390)
                     /locus_tag="SFZ84_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            4389..4493
                     /locus_tag="SFZ84_001499"
                     /pseudo
     CDS             4389..4493
                     /locus_tag="SFZ84_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
BASE COUNT         1660 a          705 c          619 g         1519 t
ORIGIN      
        1 cggatttgct tgaatttgta aataaagagc tttttcctta tcttaaaaat tttaaaaata
       61 atgatgattt taaaagtata gagtataaaa tcggtggaat ttttgaattt atagacaatc
      121 gcatagcaat ttgtaaataa agagcttttt ccttatctta aaaattttaa aaataatgat
      181 gattttaaaa gtatagagta taaaatcggt ggaatttttg aatttataga caatcgcata
      241 gcaaatggac atactttaag agaagcgata aatatcattg atgagattag ttttaataaa
      301 gaagatgaag tatttgcctt aggtgaagtt tatgaaaagc ttttaaaaga tatgggtagc
      361 gatggtggaa atagtggaga attttacacc cctcgtcctt tgataaaggc tatggtggaa
      421 gtaatagatc ctaaaccaaa agaaagaatt tatgatcctt cttgtggtag ttgtggattt
      481 ttagttgaga gttttttaca tattttatat aaagacagaa ccaaaggcaa aaaagcaaat
      541 ttaagcgtag aagagcttga atttttaaaa aatgatgctc tttttggtaa agaaaaaact
      601 ccgcttagct atgcaatggg cgttatgaat atgatattac atgaaatttc aagtccaaat
      661 atcataaaaa caaacacttt aagtaaaaaa atcacagata taacagaaca agaaaaatac
      721 gaagtaatac ttgcaaatcc accttttgga ggtaaagaaa aagaacaaat tcaagaaaat
      781 tttcctataa aatcaaacgc tactgaactt ttgtttttgc aacacatttt aagatcttta
      841 aaaaacaatg gaagatgtgc gatcatcgtg cctgaaggtg tgctttttca aaattcaaat
      901 gcctttgtga gtgtaaaaaa agatttacta gatgatttta atttagaatg cgttttgagt
      961 ttgccaagtg gggtattttt gccttatagt gctgttaaga ctaatgtgct ttttttctct
     1021 aaaggtaaaa aatgtatttg tgaaggcgat ggagtttatt actacgagct tataccacct
     1081 tataaactta ctaaaaataa gcctttagaa tacacacatt ttaaagaatt tctaaagtgc
     1141 tacaaagaaa gaaaaatcac tgctaattct tggcttgtta gcaaaaaaga gcttgaagaa
     1201 agaaattatg atttaagtgc taaaaatcca aatgtaaaag aagaaaaaat cctaaaaact
     1261 agtgaagaga ttttaaattc tttagaagaa aatctaaaaa tacaacaaga atatctaaat
     1321 gagcttaaaa gcatactaaa atgattgcaa gttttttgat aaaaactaat ttacaaataa
     1381 cttctaagct caatttacaa taaatattta ttgcttgcat tctacttttt aatatcatca
     1441 agcaaattta gggcatttaa agcctttgga tagccaatat atggaataag agctgcaatg
     1501 atatttagca aatcttttct actttgcccc atgttaagat tgccttgtat gtgagctttt
     1561 acttgattgt ctagcccacc aagtgagata agatatacaa gggttaaaag ctccctagtt
     1621 tttagatcaa gccccatgcg tgtatagtag tctccaaaac aattcgcact caaaaaatca
     1681 tttataaaag ctttatcttc tggggtagat tctatcattt tagtgatatt agcttcacca
     1741 aaaatagtat tttgtatttc cctacctttt attttgcgat tttcttgcgt agtagtgtct
     1801 ttcatcactt gcaaaaagtt gatccttttt tacttctcct aagagttttt caaaattttc
     1861 tcttgctttt tgtcttaatt gcatggtttt atcctttgtg gtttttaaaa tttgtgaaaa
     1921 aagagcattt aaaatactcc aaaaaaacat aaaagttttt ataaaatttt tatgttttat
     1981 ttacaaattt ctttactctc ttgcttcttt taaggcattt tcatattctt catcgctaac
     2041 aagctcaagc cattctacat ttttaccctc tttctcgcct gtaagtgcta tgtgtgctcc
     2101 actacttgta ttagttgcac catgaaaatg ctttactcct ataggacagc ttatgacatc
     2161 gcctttttta gctataaagg ctttttggcc tggaactttt gtgatgattt caccctctgt
     2221 tacgattaag gtttgtcctt gaggatgagt atggcatgca cttctagcac tgacttcaaa
     2281 ttcaactaaa gccccactaa aatttctcca ctcatttgat ttaaacatca tagaaacttt
     2341 tacatttttg ctaaaaaatt tactatcacc tttaaaactt ccatgaattc ctgctttttc
     2401 taattcttgc attttacctc attttttagt attataaaac atgagagcta ctctaagtca
     2461 agtaaaaatt taaaatctta atttcatttt ttctatccta cttcttacaa aaatcatgat
     2521 aattcataaa atcaacaaaa caatagtatt tacgataata taacgcgtat cgctcaaaga
     2581 aatcacaagt ccacaaatag cagttccggt gcttaatcct atattggcca cgcttataaa
     2641 aagtccattg ctaaaattag cagcctttgg aaagggataa cttatcataa aatgcgtgcc
     2701 gttattcatc acacctgcta aaattcctaa tataaaggca aatattataa gtataatttc
     2761 actataaaaa ctaaaaagta aaatataaaa tcctatcata attaaaggtg ttaaaatcaa
     2821 agtaaaattt gcgtttttaa caagggtctt tccggctata taattgccta taatatttga
     2881 aaaaccataa atagccaata caatactaat taaagtaaaa ttcatctttc ctacactatg
     2941 taagaaatca gaaaaataag agtaaaaacc ccaaattcca gcatttatac aaataacaca
     3001 aagtatgcta atccataaaa gtgggtatct taaaataagc aattgtttgc ttatttttac
     3061 agaatttact tttttaaaat caggaacaaa aaataaagtt gctataaaag ataaggtatt
     3121 taaaaataca aaaaataaca ttgccatttt aaaactaaaa tttccaccaa aataactagt
     3181 cataggtaca cccaaaacca ttccagcact aactgctgca aaaatcttag ctgtagcttt
     3241 tggaatttct ttcttatctt cgaccaaatt tgcaaccata cttagagcaa gagctatata
     3301 aataggatga aaaaaagcag gaatagctct taaaataagc aattgccaaa attcactcac
     3361 aaaagcagaa gttaacgagc ttaagataaa cacagctaaa caaataagca taagtttttt
     3421 aggattgaaa tttgcacaaa gcagcgggac aataggggcg caaaaagtta tcacgagtgc
     3481 aaaaatactc gcacaccaac ccgcatctga aatacttaca ctgaaatttt gagaaacaat
     3541 aggaattata cccatcatcc ctagttctgt gctcaaaatc ccaaataccc ctaaacaaaa
     3601 tactagaata atttgagtac ttgaagcttt atttaaattt ttcattttat cctttcaatt
     3661 aatattttta aaagtataaa agatgagagt aggtctaagt caataaccta aaataaaaat
     3721 atttatctat attaaataaa atctttagaa aaatttgaaa cttcaaaata agcatttaaa
     3781 agaaataaaa gatgccttaa aagcataaag catcttttat ttataggctt attactccaa
     3841 tgcgtgtgtt ttcatagcaa gaattaagca ctatgtctat catagcacta gcataatcac
     3901 tatagctgat tttactttca ttgttggcat taatttcaaa tttttcacct atgattttat
     3961 aatgattggt ttttggaagt tctggtgaaa aatagcagat gtgctcacat atacccattt
     4021 aaagcctttt tcattacgta aaaatttcca atacttctgc acttgcttta gctatatcca
     4081 aatactcttt aagaaaatca ggtatatcca taagtcttgt agtatgattt tcatccatat
     4141 acaaacttcc aataccccat ataacaaata atttagcctt gcttccttgc aaaattttac
     4201 tcaagcattc tatgtgcttt ttatgtaagc ttaatttttc ccattctcca aaagcgtcga
     4261 taataatatc aaaatctatc agatctttaa aatcaagctc aaaaagatct ttttgcgcta
     4321 ttttagcttg aggtaaaaat tcattcattt tagagttatt gcgtataaaa catactggtt
     4381 ctaaatttct gatcaaacgc aaagtttacg cagaaattcc tccaatagtt gaatacttac
     4441 ttatatcttt aggcaatagt ttagaatcca tcttaaaaag tcttgagaat tagggaaata
     4501 gct
//
LOCUS       DARGED010000116         4312 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.116, whole genome shotgun sequence.
ACCESSION   DARGED010000116 DARGED010000000
VERSION     DARGED010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4312
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.116"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            77..907
                     /locus_tag="SFZ84_001500"
     CDS             77..907
                     /locus_tag="SFZ84_001500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203593.1"
                     /translation="MDYIWIKEWIDECIKIYEEKSTKDQKFILDIQNIIFTLNQYKSI
                     LQWYMTDEYTQRDDVLEFIFQNNIKMQNLKNAMILYRYNKNKSELKNLNEENYKKAKD
                     IIQHKWSNICEYIIEEFFDSFEHKEIKIGDITFIGNKIEENRVNHGVFIFYPIDYKNE
                     SIYPCIYIYFKKKYYDIIGLTFEISNDDEEDIENEKYKECLKLFKDVKEENVRKYQNH
                     YYCDKLINNEKLEGEYAFIYWLIENQNSKKDFIQILNDFFIKKPIQEAYKGINDILNS
                     "
     gene            968..>4312
                     /locus_tag="SFZ84_001501"
     CDS             968..>4312
                     /locus_tag="SFZ84_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8203594.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQNFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERMSKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEAAKEFANLKKEYDSIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLK
                     DNGVLSYITSNKYTRAGYGEALREFLLKNVKFLEYTDLNGIKVFDSATVDTSILCFEK
                     SKSKDNKFKYLALSNEILKTCAYNIGLYKDFAEFSQNSLSKESFTFSDENTSALKAKI
                     ERIGTPLKEWYGLNIYRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKML
                     RGRDIKRYSYEWAGLWVIGTFPSLKIDIEQYPALKQYLSQFLPRIEQSGEKGCRKKTS
                     NKWFETQDNIAYYEEFEKEKIVYPETT"
BASE COUNT         1758 a          571 c          664 g         1319 t
ORIGIN      
        1 tagtttggga aattttacaa taaagacaaa tttgattaaa gataaaaatg aaaataatgt
       61 tagctattat ttgaagatgg attatatatg gattaaggaa tggattgatg agtgtataaa
      121 aatatatgaa gaaaaatcaa ccaaagatca aaaatttatt cttgatatac aaaacattat
      181 ttttactcta aatcaataca aaagtatttt acaatggtat atgacagatg agtatactca
      241 aagagatgat gtactagaat ttatttttca aaacaatata aaaatgcaaa atttaaaaaa
      301 tgcgatgatt ttatatagat ataacaaaaa caaatcagag cttaaaaatt taaatgaaga
      361 aaactataag aaagctaaag atattatcca gcataaatgg agtaacatct gcgaatatat
      421 aatagaagaa ttttttgata gttttgaaca caaggaaatt aaaataggtg atataacttt
      481 tatcggcaat aaaatagaag aaaatcgtgt taatcatggt gtgtttatat tttatcctat
      541 tgattataag aatgaaagca tatatccatg tatatatatt tattttaaaa aaaaatacta
      601 tgatattatt ggtttgacat ttgaaatttc aaatgatgat gaagaagata tagaaaatga
      661 aaaatataaa gaatgtttaa aattatttaa agatgtaaaa gaagaaaatg ttagaaaata
      721 tcaaaatcac tattattgtg ataaattaat aaacaatgaa aaattagaag gagaatacgc
      781 ttttatttat tggttgattg aaaatcaaaa ttctaaaaaa gattttattc aaattttaaa
      841 tgattttttt attaaaaaac ctatacagga agcatataaa ggtattaatg atatattaaa
      901 ttcttaaaaa attttatata aaagtaaaat ttgataaaat acaaaatatt ttttataaag
      961 gttaaaaatg catttcactt tgctaaatga aaaagatttt ttcaacccat actaccgcaa
     1021 aaagcaaatc atgcaaaatg aatttgatat atttaacaag gctttaatgc aatatctaga
     1081 aagacttgaa agttcgcaaa gtgaaaatga agattatctt gtagctaatg cacttagtcc
     1141 atttttaacc atgttaaatt tcaaaactca catcaaaacc aagcaaaaag gcaaaagtga
     1201 gattgactta tccatctcta aagatgagtt tagtaaagac ttagaagttc ttattgaggc
     1261 taaaaagcca aattcaaaag aatttatcac tcatacaaag gtaaattcta aagccttaca
     1321 cgagactatt ttatattatt ttagaaatag agagtatagt tttagcttaa aatttattat
     1381 catcacagat ttttataaat tttacatttt taaaattagt gagtttgaag agctttttta
     1441 taaaaatcca agttttaaaa aactttttga agaattttgt aatccaaatt cacttttcaa
     1501 aggcaatacc gaagaattct ataaagaagt agccaaactc atagaaaatt ccaaagaaaa
     1561 cttaaaaggc tttttgattg acttgacgtt tttaaaagac aaacaaaaat caaattttaa
     1621 aaacctagca agtatttata aaacttttca tagagacttt ttgctaagtg agtttaaccc
     1681 caacgatgca aattcactca acaatgcttt ttacaaagag cttttatata tcttagggct
     1741 ttgtgagagc aaacaaaact caaaactcat catcgcaaaa agtgaagaaa gcaaagaaga
     1801 gcaaggcact ttctacaccg ctataaactc taagcttaaa gaagaaaatt ttgaaaccat
     1861 cttaaaactt ttgatcttat ggcttaatcg cattttgttt ttaaagctta tagagtcaaa
     1921 tttggtgcgt tttaatgatg ataaaaattt gaaattttta aatttcaaaa aaatccctga
     1981 ttttgacaag cttagcgaac ttttctttga agttttagcc aaagaaaaaa gcacgcgaaa
     2041 gaaaagcgaa tttgcttatc taccttatct aaattcttct ttgtttgaaa aacaaagcat
     2101 agaaaacaca cttgaaattt caagcttaag caatgactta aagctttttt actataaaaa
     2161 caccgtgcta aaagatgata aatgcaaggc taaaaaagga caagtggggc ttttagaata
     2221 cttgtttgaa tttttggata gttttgattt tggtagcgat gatgagcaaa gcgaaatttt
     2281 aagccaaaaa gaactcataa gttcaagtgt tttaggaaat gtgtttgaaa aactcaatgg
     2341 ctacaaagaa ggaagctttt acacgccaag ctttatcact tcttatatgt gcaaagaaag
     2401 catcacaaaa gttgtgcttg ataaattcaa cgctcaattt gatcttgatg ctaaagatat
     2461 aagcgaacta agaaagtctt taagaaaaga agataaaaaa gcacaaaaag agcttttaaa
     2521 ctctataaaa atttgcgatc ctgcggtggg aagtgggcat tttttggttt ctgctttaaa
     2581 tgttatgtta agcatttatg atgagctaaa tctttttgat gaagaatttt acctagaagt
     2641 gcaaaacgat gaaattctca tcacgggtag aaaaggcgag tttatagagt ataaacgccc
     2701 aagtacgcct aaagataaag cccatcttat ccaacaagaa ctttttcaca ctaaaaaaga
     2761 catcatagaa aacaaccttt ttggagtcga tatcaaccca aactcatgcg agatcacgaa
     2821 gctaaggctt tggatagagc ttttaaaaca cagcttttac caaaactttg atgatgagaa
     2881 ttatcacgat cttaaaaccc taccaaatat cgatataaac ataaaatgcg ggaattcttt
     2941 ggtgtcttac tttgaaacag gcaaaagcct aaaccactat cctaatatca aagaacgtat
     3001 gagcaaatac aaacgcatag taaaagacta taaagagggc ttttacacag ataaaagcca
     3061 catcaaccaa gagataaaaa atctcaaaat ttcttttaaa aatttctgct ttgcagataa
     3121 atttaaaaaa gaaatgaaaa gctttaatga taaatgtgaa aaatactcta aaaaatacgg
     3181 aaatttctta gccgtagatg atgaaaattt gaaattcttt gttagtgcga atttgactct
     3241 ttttgacttt gatgaaaaag aagccgcaaa agaatttgca aatcttaaaa aagaatacga
     3301 cagtatcttc aacctagaaa gcaatcatcc ttttgaatgg cgttttgaat tccctgaaat
     3361 tttggacgat gatggaaatt tcaaaggctt tgatctcatc atcggcaatc caccttatat
     3421 aagacaagaa gagcttaaag aactcaagcc ccatttagct aaaaattata aggtttataa
     3481 aggcacgagc gatatttata cttattttta cgaactagga tttaatgttt taaaagataa
     3541 tggggtattg agctatatca cttctaataa atacacgcgt gcaggatatg gggaagcttt
     3601 gcgtgaattt ttgcttaaaa atgttaagtt tttagaatac actgatttaa acggcataaa
     3661 agtttttgat agtgctacag tggatacttc catactttgt tttgaaaaat caaaaagcaa
     3721 agataataaa ttcaaatacc ttgccctaag caatgaaatt ttaaaaactt gtgcttataa
     3781 catcggctta tataaggact ttgcagaatt ttcgcaaaat tctttaagca aagaaagctt
     3841 cacttttagc gatgagaata ctagtgcctt aaaggctaag atagaacgca taggaactcc
     3901 gcttaaagaa tggtatgggc ttaatatata tcgtggaatt ttaacaggct ataatgaagc
     3961 ctttatcatc accactgaaa aaagaaatga aattttagca aattgcaaag atgaagccga
     4021 aaaagaacgc accgctaaac tcatacgcaa aatgctacgc ggacgcgata taaaaagata
     4081 tagttatgaa tgggcaggac tttgggtgat aggaactttt ccaagtttaa aaatcgatat
     4141 agaacaatat cctgctttaa agcaatattt atctcaattt ttaccacgca tagaacaaag
     4201 cggagaaaaa ggttgcagaa agaaaactag caataaatgg tttgaaactc aagacaatat
     4261 cgcttattat gaagaatttg aaaaagaaaa gatagtgtat cctgaaacaa ct
//
LOCUS       DARGED010000117         4234 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.117, whole genome shotgun sequence.
ACCESSION   DARGED010000117 DARGED010000000
VERSION     DARGED010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4234
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.117"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..807)
                     /locus_tag="SFZ84_001502"
     CDS             complement(<1..807)
                     /locus_tag="SFZ84_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203595.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNQFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     RDENLRFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKE"
     gene            843..2117
                     /locus_tag="SFZ84_001503"
     CDS             843..2117
                     /locus_tag="SFZ84_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG8203596.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCSCAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIIKLSH"
     gene            complement(2114..2938)
                     /gene="purU"
                     /locus_tag="SFZ84_001504"
     CDS             complement(2114..2938)
                     /gene="purU"
                     /locus_tag="SFZ84_001504"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG8203597.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIYNNKTIIF"
     gene            complement(2935..4053)
                     /locus_tag="SFZ84_001505"
     CDS             complement(2935..4053)
                     /locus_tag="SFZ84_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG8203598.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(4022..>4234)
                     /locus_tag="SFZ84_001506"
     CDS             complement(4022..>4234)
                     /locus_tag="SFZ84_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG8203599.1"
                     /translation="FLQSEILNPSVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKD
                     DLENRLNLTINFLEFLLANIEDKLKK"
BASE COUNT         1499 a          697 c          515 g         1523 t
ORIGIN      
        1 ttccttgcta aaaccatttt ttgagattat aatgtaataa tttggagcca aattcaaaga
       61 ctttgctttt gattttaaaa gatttaaaat atttttacaa atttttttat ttttaaattt
      121 aacttctccg acaaaacgca aattttcatc tcgataataa agatcaagtt ctaaattctt
      181 atcccagtaa ctttgcactc cattgatatt gaattttttc tcaagcaatt ctctagaaag
      241 ctgttcaaaa caaaaacttt gataaagttc aaatttttct ttaatgcatt ctaaaacttc
      301 tttataacga ttttgcaaaa taagcttttc attgggcttt aaaaaataaa aaaagaaacg
      361 agtaaattgg ttgctaaata taatcttatc ttggacaaca taagatctta gttctttttt
      421 gattttttgt cttttatctt ttattttttt agcttcctta ctatactcaa gttttattat
      481 acctgtttct aaaagatatt taagtgtaga taaagcttta aaatgctgaa tttttctatt
      541 gatagaaaaa cgcttgcgat tgtttttagc tagtaaagta agagcgtaag aacttgtttc
      601 atccaaggcg aaataacttt taatttttag ataatcatca agcaaaattc gctctatatt
      661 tgtaaataca tcgtcttcaa aatttaaaat gtttaatttt tcaaaacctt caaacacact
      721 ataaaaatca aaaagcttac ttaaagacaa attcttatgc aaatctacaa agttcttaaa
      781 ttttatattt ttccttttat aaagcatttt tatagtataa ttttagcaaa tttttataag
      841 gattgtattt gcaaatttca gatttaaaaa aagaattgat cttaaaaaaa ggtattttgc
      901 attttgactt cacagcaagt gctttagctc taaaatgtgt agaaaaagaa atttcaaaaa
      961 ttctcccaac ctatgcaaac acacattctg atagctcttt gaattctttt aaaactcaac
     1021 aaatttacga acaagcaaga aaagatataa aaaaaagttt atcattagat gaaaattttg
     1081 cccttatagc ctgcggaaca ggatcaagca gtgctattaa aaaatttcaa gaattgatcg
     1141 gcatttacat tccccctctt gtaaaagaaa gatattttac gcaaattgat aaaaatacct
     1201 tacctttagt tatcgtaggg ccttatgagc atcattctaa tgaactttca tttcgagaag
     1261 gcttgtgcga atgtattaga attcccttgg ataaaaatgg ggaaattgat tttgattttc
     1321 tagaaaaaac tttacaaaaa aacaaaaaaa gaaaaataat cgctagcttt tctttagcct
     1381 caaatgttac tgggatatta agtgattaca aacgcatttc tgaaatggtt cgtaaattta
     1441 aagggatagt tgcttttgat gcatctagtt tcattcccta taaaaacata tcttgtcaat
     1501 actatgatgc gttgtttata agttctcata aattaatcgg tggtattggc ggttctggac
     1561 ttttagccat caaaaaagat ctttgtggaa acaagcctag ctttgcagca ggtggaactg
     1621 tgggctatgt ttctcgcact tcacaatgct acctttgcaa tgaagaagct ttagaagaag
     1681 gaggaacacc tggaatttta caactcattc gcgctagctt agcttttaaa atcaaagatt
     1741 ctatagggat taaaaatata gaaaaaaaag aagaaattct aaaagattat ttttttgaaa
     1801 aactaaaaac tatacctaat ttaattttat acgcaaagaa tttaaaaacc cgattgccta
     1861 tttttgcttt caatatcaaa ggaatttctc cttttgatat cgcttacgaa cttagtaaaa
     1921 aataccacat agaaacacgc gctggatgtt cttgtgctgg accttatggt catgatttgc
     1981 taggcttaaa agataatcaa aaacttaaaa caaaaccagg ttggttaaga ataagcttgc
     2041 attatacgca tgaaaaagag gatattgatt atttttttaa tgctttaaat aaaactataa
     2101 taaaattatc gcattaaaat attatagttt tattattata tataaaaatt ctatcttcaa
     2161 aagccaaatc aagtgctttt gaaagaacat ctttttctat atttctacct gcttgctgca
     2221 tatcttgcca agtaaattca tgatttacag gcgaaacagc ttgagtgata ataggacctt
     2281 catcaagatt attatttaca aaatgtgccg tagctccaat tattttaacc cctctttcaa
     2341 aggcttgttt ataaggattt gctcctataa atgcaggtaa aaaagaatgg tgaatattta
     2401 taatcttgcc ttcaaaatgc ctaacaaaat caggagataa aattcgcata tattttgcta
     2461 aaaccaaata atcaaattta tattgttcaa gacattttaa aatctgattt tcttgctctt
     2521 tacgatctaa attttcagcg ctgataaaat gataaggaat ttcaaatttc tcaactaaat
     2581 cctttaaaga gttgtgattt gaaatcacag ctttgatatt tgcttcaagt tcgttactat
     2641 aatgctttat tagcaaatct cccaaacaat gactttcttt agtagcaaaa acaacgatat
     2701 ctttttttct cttctcgcaa agctctatca aggcttcttg tccaagcata gcctcaagcg
     2761 ttcctataaa agcttcttta tcaaactcac cttctaaaag agcacgaaaa aaaaacattc
     2821 cttcgcctac aaattcatcg ttttttacta tattgatatg atatttaaaa ataacatcag
     2881 aaattctata gattaaacct ttttgatctt tggtgcaaat ttttaataca gaaatcattt
     2941 agctaaacct tttatatatt cttttaattc attctctctt gcttcttgaa gctttaagcc
     3001 aagaatttta ccacaaaatc cagcatttat gaaatctttt gctaaaattt tactttcaaa
     3061 cttattctca taaagcccta atcttttagc ttgctcaata cgctttttac tccaaagtcc
     3121 aagccatttc ttcaaaggca tttcaaaagc aatttttgct agctcaaaat cacttatatc
     3181 atcaagataa aaagcttgat ttgcgtattt taggtattct ttttgaagtt tggttctttt
     3241 aaaaaatata tctttttcta aattaaaaaa attcaaatac aaatacaaga ataaagcatc
     3301 gctttttaca aattctctac tttgtctgag caaattttga aattccaaac tcttaaaaat
     3361 actctcaaag ccgaaaatct gtttttctaa gtcaagttct tgcaaatatc tatagccaac
     3421 atcaagtcta gggcttttaa agaatttata aagctccgca ttgatcctat ctttgctaag
     3481 atcagttata tccatacttt gcatcaattt caagctttcg ctagttatct taaagttaaa
     3541 ccttgaagca aatactaccg ctcttaatac tcttaaacta tcctcttgaa agctttgttt
     3601 atcaatatgc cttaaaaagc ctgctcctag atcttttaat cctccataaa aatctaaaaa
     3661 ctcatcgtta aaaagattaa tcatcataga atttatggta aaatcgcgtc ttttggcgcc
     3721 aagtttttca tcattacaaa tttgaacttc aaaaccttta tgtccatagc ttattttatt
     3781 ttcggttcta gcaagagcta aatcataatt tttaaactta tacacaaaaa aactttttcc
     3841 aaagccttgt gcgcccaatt tttgcataat cttttcaaaa tctttaggtt ttatatcata
     3901 aagctctata tcatagtcac aaatttttaa gcctaaaaac aaatccctaa cgctacctcc
     3961 aaccaaatac gctcgtttgg tataaggctt taaaaactca gcaataaact gtaaatcggg
     4021 attatttttt aagcttatct tcgatatttg caagtaaaaa ctctaaaaaa tttatggtca
     4081 agtttaacct attttcaaga tcatcttttt ttatgctatt taaaccttca aaaagaacta
     4141 aaattctctc tctaagatgt tttaaaaaaa tatcctcatt aagcgtttga acctctgtca
     4201 taacactagg atttaaaatt tcactttgta aaaa
//
LOCUS       DARGED010000118         4167 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.118, whole genome shotgun sequence.
ACCESSION   DARGED010000118 DARGED010000000
VERSION     DARGED010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.118"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            66..446
                     /locus_tag="SFZ84_001507"
     CDS             66..446
                     /locus_tag="SFZ84_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203600.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYNEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            491..4003
                     /locus_tag="SFZ84_001508"
                     /pseudo
     CDS             491..4003
                     /locus_tag="SFZ84_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
     gene            complement(4011..>4167)
                     /locus_tag="SFZ84_001509"
     CDS             complement(4011..>4167)
                     /locus_tag="SFZ84_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8203601.1"
                     /translation="VAIIESAAPTMTLAGAMVMKAKLDSNLAVSAVAFGVLFAFVSMP
                     ILIWTLL"
BASE COUNT         1435 a          520 c          695 g         1517 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaaatgct tattattgga cataaattat taaaaaattt agatttttct tttattgaaa
      121 gtgttgaaga agttaaagat aataaagttt attgtattgt ttataatgaa aaattgattt
      181 cttatttaag tcaaaatgat tttgaatttg ctattttagt tcaaaataaa gatgagatat
      241 ttttagccaa tgctttagga gctaagtttt tgctttgtaa tgataaaaaa cttgcaaaat
      301 ttgctagtaa ggttgcagaa ttttatgttt ttgatagtag ggttttaatg attgttgata
      361 aattagagaa ttttaaaaaa ttttataaat taaaaatcga tggaattatt ttaaaagata
      421 atatagataa ttttcctaaa aactgataaa ttcttttgta aaataagcgc taattgacga
      481 ggtttaaata atgcaaaaaa aatctttttt gaaaatttac ggattaattc cttttttact
      541 tatagcattc atcaatgctt tcgtggattt gggacataaa attattattt aaaatactat
      601 ttataaggcc tatgaaggaa gtgagcagtt atttttaaat gctatagtta atgctttgat
      661 tttacttcct tttattctta tgctttctcc ttcgggtttt ttagcggata aatatccaaa
      721 aaatattgta atgaaaattt cagcaatttt caatgttata ctcactttaa taatttgcat
      781 ttgttactat agcggtgctt tttggatggc ttttattttt acttttataa tgggagcaca
      841 agcagcgatt tattcaccaa gtaaatacgg ttttattaaa gaactcgtgg gaaaagactt
      901 tcttgctatg ggtaatggtg taattaatgc ggtaagcatt gtggcaatct tagcgggaat
      961 ggctttattt tctttaagct ttgaaagtct ttatagttct gcatataatc aaacagatga
     1021 aattttaaaa gaagtagcgc ctttaggaat tgtgctaatt ttattttctt gtatcgaagt
     1081 attttttgcg tggcgtttac ctaagctcaa acaaacaaat aaagatttag tttttaataa
     1141 aaaagactat attcgtggaa aacttctaat aaataatctt aagcttgttt ttaaaaataa
     1201 aactatttgg ctttgtataa ttggaatttc atttttttgg gctatatctc aactttatct
     1261 tgtcagcttt cctgtctttg ctaaaaatga acttttcata gaaaatactt tttatgtgca
     1321 aatttcactc gctttttctg gtataggagt gattttaggc tctttagtag ctggtaaatt
     1381 ttcaaaaaat tatatagaac ttggatttat tccacttggt gcattgggta tgtttttaat
     1441 ggctttttta atgccttatt ttataagttt attaagttat agttttttat ttttcttttt
     1501 tggattttgc ggagcccttt ttatcattcc tttaaatact ttaatccaat ttcatgctaa
     1561 agaaaatgaa ttaggacaaa ttcttgcagg aaataatttt tttcaaaata ttgccatgtt
     1621 gggatttttg ctcttggcaa ctttatttgt aaaatttgaa atcaatgtga tttatttgtt
     1681 ttattttatt gctttggtaa cctttatagg aagtttttac atacttttaa aactcccctt
     1741 ttctttagtg cgtatacttt taagcatagc ttttttacaa cgataccgtt tacttgtgga
     1801 aggttttgaa aatataccag aaaaaggtgg agctttactt ttgggtaatc atatttcttt
     1861 tattgattgg gctgttgtac aaatggcaat tccaagaaaa atttattttg ttatggaaag
     1921 aagtatttat tctaaatggt atattaaaat ttttcttgat aaatttggta ttattcctgt
     1981 atcaagtaca ggaagtaaaa cgagtttaga actgatagca aagcatatta aagaaggtaa
     2041 tttagtttgc ttatttcctg aaggtacact ttcgcgacat gggcaattaa atgaatttaa
     2101 agcaggattt gaattagctt gtgaatgttt aagtgaagat gatggaaaaa ttattccttt
     2161 ttatataaga gggctttggg gtagcgcttt ttcaagaagt gatgaagaat tttcagcaag
     2221 aaaccgcact ttaaataaaa gaaaaattgc tatagctttt ggtaaagcta tgcctttgca
     2281 ttctaaaaaa gatgaagtta aagctaaagt ttttgaactt tcttttatgg cttggaaatc
     2341 acaatgcgaa gctatgcata ctatagcaag agcttggata gatacagcta aaaaaaatct
     2401 aaatcaaata gctattatcg atacactagc tggagatatt tcttatagaa aaatgttgac
     2461 tcttagttta tttcttaatt tttttattaa aagaaaatcc aaagaattaa acattaacct
     2521 tcagcgtgga agttatgctc ctaaagagga agctatagga attttactac ctgcttcttt
     2581 tgcaagttct ttaaccaatc tatctgtttt aatcgcagaa aaaattgcag taaatcttaa
     2641 ttttacggct ggagaaaaag ctctaaaagc agctataaaa aatgcgcaaa tttcacaaat
     2701 ttatacttct aaaacttttt tagaaaaatt agcaaataaa ggtataaacc taaatttcga
     2761 tacaaatata catttaattt attttgaaga tattatagaa gattttaaaa tgcaaaaaac
     2821 taaaattttt agcatgatgc tagcagttag tattatacct agttttatac tcaaaagcat
     2881 cttcactcct tcaaaaaaca atcttgccat cgcagctatt ttatttagta gtggaagtga
     2941 aggttctcca aaaggtgtta tgctcaataa ccgtaatatt ttaggcaata tagcacaaat
     3001 ttctgatgtg ctttgcacaa gaaataatga tgtcattctc tcatctttac caccttttca
     3061 tgcttttgga cttaccgtaa ctacattttt gcctttgctt gaaggtatta aaagcatcac
     3121 tttttcagat ccaaccgatg ccttaggggt tgccaaagct gttgctaaaa ataatgtcac
     3181 tattatgtgt ggaacttcaa cctttttagg aatttatgca agaaataaaa agcttgatgc
     3241 tttaatgttt gaaagtttaa gaatagttgt atcgggcgct gaaaaactaa aaaatgaagt
     3301 aagaactgtt tttgaaatga agtttaaaaa aagcattttt gaaggttacg gggctacgga
     3361 aaccacgcct gtggcgagtg taaatttacc aaatcatttt gatgtggatt attggcttat
     3421 acatcgtgcc aataaagaag gaagcgtagg aatgcctcta cctggaactg cggtacgtat
     3481 tgttgatcca aataattatg aaaatttaaa aacaaatgaa gatggactca tacttatagg
     3541 cggtcatcaa gttatggtag gctatcttaa tgacaaagaa aaaaccgatg aagtggttaa
     3601 agaaattgat ggcataagat ggtacaacac gggagataag ggacatttgg atgaagatgg
     3661 ttttttatat attgtcgatc gttattctcg ctttgcaaaa attggcggag agatgatttc
     3721 tttgggtgca atagaagaag aaattgccaa atttatagac actgaagtgg ttaaattttg
     3781 tgccacatct ttagaagatg agaaaaaagg ggaacaaatt gttttactca tagaatgcaa
     3841 taatgaaatt tttgaaggag tatgtgaggc tataaaaaat tctaatatac ctacactttt
     3901 taaacctaga tattattttc aaatagaaaa aattcccctc ctaggttcag gaaaagttga
     3961 tcttaaaaaa gttaaagaat tagctaaaaa tttagccata taatttgagc ttataacaaa
     4021 gtccaaatta aaattggcat agaaacaaaa gcaaaaagaa ctccaaaggc tacagcactt
     4081 acggctaaat tgctatctag tttagctttc attaccatag ctcctgctaa agtcatagta
     4141 ggagctgcac tttctataat agcaacg
//
LOCUS       DARGED010000119         4166 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.119, whole genome shotgun sequence.
ACCESSION   DARGED010000119 DARGED010000000
VERSION     DARGED010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4166
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.119"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..599
                     /locus_tag="SFZ84_001510"
     CDS             <1..599
                     /locus_tag="SFZ84_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203602.1"
                     /translation="SDIFKYSLIDPTPYSNNDKTITKSGIFMTFFTGFQAKNYFIEGQ
                     TSILGKMQGFDKTMSQSEIDNLNKFISENSMNFKGDIFKLFDLLNSDMSIDDFKQKIL
                     EQKENLNNPTKNTNNKETSEEDKKKPFKPIQAQSSSETYKDDNKMNELLKKLLENKFG
                     TSDELELLFGMKFSDDNTGEFNKIISQNTAQKSIDIKA"
     gene            699..1304
                     /locus_tag="SFZ84_001511"
     CDS             699..1304
                     /locus_tag="SFZ84_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG8203603.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            1304..2320
                     /gene="mnmA"
                     /locus_tag="SFZ84_001512"
     CDS             1304..2320
                     /gene="mnmA"
                     /locus_tag="SFZ84_001512"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG8203604.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(2348..2592)
                     /locus_tag="SFZ84_001513"
                     /pseudo
     CDS             complement(2348..2592)
                     /locus_tag="SFZ84_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
     gene            complement(2715..2954)
                     /locus_tag="SFZ84_001514"
     CDS             complement(2715..2954)
                     /locus_tag="SFZ84_001514"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8203605.1"
                     /translation="MSRFYFYGLELWVCFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            complement(2893..3117)
                     /locus_tag="SFZ84_001515"
     CDS             complement(2893..3117)
                     /locus_tag="SFZ84_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8203606.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(3171..3506)
                     /locus_tag="SFZ84_001516"
     CDS             complement(3171..3506)
                     /locus_tag="SFZ84_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8203607.1"
                     /translation="MARGVIKTELGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGVIINPIVQVIARSFKSAPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWWLIL"
     gene            complement(3729..3863)
                     /locus_tag="SFZ84_001517"
     CDS             complement(3729..3863)
                     /locus_tag="SFZ84_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HEG8203608.1"
                     /translation="MEDNSWHFLEFFIAVIMAVILQVMPFIAIAIVALSGITTTQLKI
                     "
BASE COUNT         1623 a          633 c          662 g         1248 t
ORIGIN      
        1 aaagtgatat ttttaaatat tctttaatag atcctactcc ttatagtaat aatgataaaa
       61 ctataacaaa aagtggtatt tttatgactt tctttactgg atttcaagca aaaaactatt
      121 ttatcgaagg acaaacaagt attttaggca aaatgcaagg atttgataaa actatgagtc
      181 aaagtgaaat tgataattta aacaaattca taagtgaaaa tagtatgaat tttaaaggag
      241 atatttttaa gctttttgat ttattaaatt cagatatgag cattgatgat tttaaacaaa
      301 aaatactaga acaaaaagaa aatttaaaca atcctacaaa aaatacaaat aacaaagaaa
      361 cttcagaaga agacaaaaaa aagccattta aacctataca agcgcaaagt tcaagcgaaa
      421 cctataaaga tgataataaa atgaatgagc ttttaaaaaa gctactggaa aataaatttg
      481 gcacaagcga tgagttagaa cttctttttg gtatgaaatt tagtgatgat aacacaggag
      541 aatttaacaa aattatttct caaaatactg cacaaaaaag tatagatatt aaagcttaag
      601 gatttaaaag tctttaaatt ctattaaaac ttatataata aagaacttat tataaatttt
      661 tagctagaat ggaatttatt ttaactaaag gttgaaaaat gaatgaaaaa ataagccaag
      721 atttagaaaa atttgctaac ataccaaacc taaaaaatgc cgtaactttt tttggttcag
      781 caaggcttaa agaagataat ttttattatc agcaggctaa aattttggca caaaaatgtg
      841 ttcaaaatgg tttttgtgtg ataagtggtg gaggtggtgg tattatgcgt gcagccaacg
      901 aaggtgcttt ttcacaaaaa aataatacaa attcaatgag ttctgtaggg tttaatatat
      961 ttttacctca cgagcaaaaa cttaatgatt ttgtagaata taatattact tttgagagct
     1021 tagccatacg caaaatggct cttattgaaa agagtctagc ttttgtgatc ttcccaggcg
     1081 gctttggaac acttgatgaa ttgtgtgaaa ttcttacatt aaaacaatta gaatttaaaa
     1141 aagatgttcc tattattttg tttgggagtg aattttggcg aggttttgat gagttcgtca
     1201 gaaattcttt actcaaactt gaagtgattt ctaaaggaga tgagttaaag tataaaatca
     1261 ctgacgactt ggattttata attaatactt taaaggaaat ttaatgaaaa ttctagtcgc
     1321 tatgagcggt ggagttgata gtacagtcac tgcttacaaa cttaaaaatt taggtcatga
     1381 agttataggt tgttatatga aacttcatgg caaaccaaat tatcacgaag aaaatatcaa
     1441 aaaagtagaa aaagttgcaa actttttgca aattccttat catattttag acttacaaga
     1501 agattttaaa aacaaagttt acatgccttt tgtggatact tataaagagg gtaaaacacc
     1561 aaatccttgc gctttatgta accgttttat caaacttgga aaacttttag aatttgctaa
     1621 aagtttaggt tgtgaaaaac ttgccacagg gcattatgca agacttgaaa acaacttaat
     1681 aaaaaccgca gtagatgaaa gcaaggatca aagctatttt ttagctagcg cagataaaga
     1741 agctttaaaa tatcttattt ttccgctagg cgaaatgaaa aaagaagatg tgaaaaaatt
     1801 tgcttccact atagaggttt taaaatcttt tgccacccaa aaggaaagtt ctgaaatttg
     1861 ctttgttgaa gatacttatg tgcaagtttt agatcagttt atggatacaa aaattcctgg
     1921 agaagtatta gatagtagcg gaaaagtggt aggcaaacat gagggctata tgcactatac
     1981 cataggcaaa agaaggggct ttgaagtgcg tggggcacat gaaccacatt ttgttttaaa
     2041 aatcaatcct aagcaaaacc aaatcatcgt aggaaccaaa gaagaactta aaatcagtga
     2101 atttaaccta aaaaatatca atctttttat agacgctaaa gagcttgttt gcgaagtaaa
     2161 aatccgctat cgttcaaaat ctacaccttg taaggtagaa atttatgaag ataaaagcgc
     2221 aaaaatcact ctaaaagatc ctgtttatgg acttgctagc ggacaaatgg cagtctttta
     2281 tgatcatgat aaagtcatag caagcggttt tatagaataa tttctaggaa ttaattccta
     2341 gaaattatta ataaaatcct aaaattttcc accaaaaaag cccaacagct atcatcacca
     2401 ctatatcaac catggaaatc acaaaaccta tactccacca ttttttaaga gttacatagc
     2461 ccgttccaaa ataacaggag ctgttcctgt tgcatagtga gttaatgcca tcataacatt
     2521 acctgaagct atcataataa aagcataaaa aagtggtggt gctcctaagg caagctgcac
     2581 tataaaaaac aaaaaacatt gctgatatat gagctgtaat ggaagcaaag aaatagtgtg
     2641 tatataaaaa aagcaaggct taaaaatatc ataatagaaa tttccccaag tcccatagca
     2701 gaagcaaatt caccttaagc ttcagctaaa aactgtgtaa caccaagttt gccaagtaaa
     2761 gttgccatca ttacaagagc tgaaaaccat actaaagtat tccaagcagc tttttcagcc
     2821 aaaacttccc caaaagttaa aactccacta atcaacacca aagacaaccc aagcaaagcc
     2881 acactagtcg catcaagaga aattccaaaa aaacaaaccc aaagctccag cccataaaag
     2941 taaaagcgag acaaaaacac tgagcatgat tttttcacta tttttcattt ttacaagttc
     3001 ttttaattta tctttagcaa aagtagaagc attaggcgtg gatttaattt ctagcggaga
     3061 gagaaaataa agcatcaaag gcatcaaaag catagcagct ataccaggta aaaacatccc
     3121 taaagcctat tacccccaag ttaaatgcac ttctaaattt gtagcttgtg ctataagatc
     3181 aaccaccaaa ggatttggag ctgtagctgt aataaacata gctgatgaaa taggattggc
     3241 tcttgataat ttaccaaaga aagataagtg cctattttat tttgtgttcc atcttcagga
     3301 gcggatttaa aacttcttgc aataacttga actataggat ttatgataac ccctgctctt
     3361 gcagtatttg aaggagtaac tggagctaaa atagtttcac aaaaagctat agaataagca
     3421 atacctaagg tttttttacc aagaatactg ataaaatgat aagccaaatg ctctccaagt
     3481 tctgttttaa taactccacg agccacaata atagaataac tataagctaa ataagagaat
     3541 ttgaaaaacc acttaaagcg tcttttatac tcgttttaga ttttaaattt gatatagcag
     3601 tatttacctt ttcatcttat actcttttga tataaaaaat caagtactga agtatttaaa
     3661 ggaaatttta gtctcatcaa taagttgttg cgtagaagtt tttgaagtag ctttggtgta
     3721 aattttactt agattttcaa ttgggtagtg gtaataccac taagagccac tatggcaata
     3781 gctataaaag gcattacttg taaaatcact gccataatca cggcaataaa aaactcaaga
     3841 aaatgccaag aattatcttc caaacctaca aggagtaggt ataggccaaa acacagttgc
     3901 aattaaaata cacagcacca acaagggaat tttctttcta tccattgttt atcctttgat
     3961 attggtaatg taatttacaa tgcttaaatt ctagttaact aatattttaa taaatcttaa
     4021 aattataatt tttaaataaa tttttaattt ataaaaaagc cagcctaatt gaaaaatggg
     4081 aattttaaaa tgaataaaac ccttccccag ataactgcgg cacacactaa aatcaagtgc
     4141 tctgctgtgt tcccaccctg aagcgg
//
LOCUS       DARGED010000120         4016 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.120, whole genome shotgun sequence.
ACCESSION   DARGED010000120 DARGED010000000
VERSION     DARGED010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4016
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.120"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            3..731
                     /locus_tag="SFZ84_001518"
     CDS             3..731
                     /locus_tag="SFZ84_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8203609.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     MPSEFFSNPKTERARLFLGKILKN"
     gene            753..1532
                     /gene="peb1A"
                     /locus_tag="SFZ84_001519"
     CDS             753..1532
                     /gene="peb1A"
                     /locus_tag="SFZ84_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG8203610.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1534..2286
                     /locus_tag="SFZ84_001520"
     CDS             1534..2286
                     /locus_tag="SFZ84_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8203611.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2297..2956
                     /locus_tag="SFZ84_001521"
     CDS             2297..2956
                     /locus_tag="SFZ84_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8203612.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3064..3993
                     /locus_tag="SFZ84_001522"
     CDS             3064..3993
                     /locus_tag="SFZ84_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG8203613.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
BASE COUNT         1348 a          502 c          766 g         1400 t
ORIGIN      
        1 acttgattga attaaaaaat gtaaacaaat actacggaac tcatcatgtt ctaaagaata
       61 ttaatctttc tgttaaagaa ggtgagaagc ttgttattat aggtccaagt ggaagtggaa
      121 aaagtacaac tatccgttgc atgaatgggc ttgaagaagt tagttcagga gaggtcgtag
      181 ttaacaatct tgttttaaat cataaaaata aaattgaaat ttgccgaaaa tattgtgcaa
      241 tggtttttca gcattttaat ttatatccac atatgacggt tttgcaaaat ttgaccttag
      301 ctccaatgaa acttcaaaaa aaatctaaaa aagaagctga agaaacagct tttaagtatt
      361 taaaagttgt aggtttgctg gataaagcaa atgtttatcc agcaaccctt tcaggtggac
      421 aacaacaacg cgttgctata gcaagatcac tttgtactaa aaaaccctat attttatttg
      481 atgaacctac ttcagccctt gatccagaaa ccatacaaga ggttttagat gtaatgaaag
      541 aaatttcaca tcaaagcaat actaccatgg tggttgttac acacgaaatg ggttttgcaa
      601 aagaagtagc agataggatt atttttatgg aagatggtgc tattgtggaa gaaaatatgc
      661 ctagcgaatt tttctcaaat ccaaaaactg aaagagcgcg actcttttta gggaaaattc
      721 ttaaaaatta accaaaattg aaaggagaaa aaatggtttt tagaaaatct ttgttaaagt
      781 tggcagtttt tgctctaggt gcttgtgttg catttagtaa tgctaatgca gcagaaggta
      841 aacttgagtc tattaaatct aaaggacaat taatagttgg tgttaaaaat gatgttccac
      901 attatgcttt acttgatcaa gcaacaggtg aaattaaagg tttcgaagta gatgttgcca
      961 aattgctagc taaaagtata ttaggtgatg ataaaaaaat aaaactagtt gcagttaatg
     1021 ctaaaacaag aggccctttg cttgataatg gtagtgtaga tgcagtgata gcaactttta
     1081 ctattactcc agagagaaaa agaatttata atttctcaga gccttattat caagatgcta
     1141 tagggctttt ggttttaaaa gaaaaaaatt ataaatctct agctgatatg aaaggtgcaa
     1201 atattggagt ggctcaagct gcaactacaa aaaaagctat aggtgaagct gctaaaaaaa
     1261 ttggcattga tgttaaattt agtgaatttc ctgattatcc aagtataaaa gctgctttag
     1321 atgctaaaag agttgatgcg ttttctgtag acaaatcaat attgttaggt tatgtggatg
     1381 ataaaagtga aattttgcca gatagttttg aaccacaaag ttatggtatt gtaaccaaaa
     1441 aagatgatcc agcttttgca aaatatgttg atgattttgt aaaagaacat aaaaatgaaa
     1501 ttgatgcttt agcgaaaaaa tggggtttat aatatgaatg aaagtgtagg ttttgttgaa
     1561 catttaagac aaattcttac ttcttggggt ttatatgatg aaaatagtat aagccctttt
     1621 gcggtatgga aatttttaga tgctttggat aataaagatg cttttattaa tggttttatt
     1681 tatactttag aagtaagcat tcttgctttg cttatagcta caatttttgg aactataggc
     1741 ggagttatgg ctacaagtag atttaaaatt atcagagcct acactagaat ttacgtagag
     1801 ctttttcaaa atgttccttt ggtaatacaa attttctttt tgttttatgc cttgcctgtt
     1861 ttaggtataa ggcttgatat atttactatt ggtgtattgg gtgttggggc gtatcacgga
     1921 gcttatgtaa gcgaggtggt tagaagtgga attttggctg tgccaagagg tcagtttgaa
     1981 gcttctgcgt ctcaagggtt tacttatatt caacaaatgc gttatattat agtacctcaa
     2041 accattagaa ttattttacc accgatgaca aatcaaatgg taaatttaat taaaaatacc
     2101 tctgtattgc ttattgtagg tggagctgag ttaatgcatt ctgctgatag ttatgcagct
     2161 gattatggaa attatgcgcc ggcttatata tttgcagcgg ttttatattt tataatttgc
     2221 tatcctttgg cttattttgc aaaagcttat gaaaataaat taaaaaaagc acatttaacg
     2281 agataaaggg ttgttaatgg aaaatgtttt taatgcacaa aatattgaat ttttaatgca
     2341 aggtttattt ctgacattaa aaatagcctt agcaacttgt attatttcga ttgtttttgg
     2401 aactttttta gctataacta aaaattatgg ggatagatta agtaaatttt tagcagcttg
     2461 ctatatagat atttttagaa atactccttt attattatgg atgcttgcag cttgttttgt
     2521 tctacctgta ttttttggac aatttcctca agctttttgg ggtactatag gattttcact
     2581 ttatacgagt tcggttatgg ctgaaattat tagaggtgga ttaaattcta taccaaaagg
     2641 tcagtttgaa gcagcttatt ctcaaggttt tggtaaattt tttactcttt tttatattat
     2701 tttaccacaa acttttagaa aaataatacc tgctttatta tctcaaattg taaccactgt
     2761 aaaggataca gcttatttag cgggtttagg tatagctgaa cttacttata attcaaaaac
     2821 tatattggca aaactaacaa gttttgaaga aattttagcg atgataggtg ttgttgcggg
     2881 aatttatttt ataatatgtt tttcactttc tatgttggta agatattatg ccaaaaagac
     2941 agcttacatt tcttaaaaaa gcttatattt ttatataagc tttttaaatt tacagcagtt
     3001 tttaacattt tttttattaa aatcttttgt attaattcat aattttattg attaaggttt
     3061 tttatgcgag gttataaaat tttttcaggc tcagctaatg tcgaatttgc aagacaagtt
     3121 tctaaatatc tctccctgcc tttaagtgat gctggagtaa agcggtttag tgatggagag
     3181 attagtgttc aaattgatga gagtgtacgc ggaaaggatg tttttattat tcaaagtact
     3241 tgcgctccta caaacgataa tttaatggaa cttttaattc ttacagatgc tttgcgtcgc
     3301 tcaagtgcaa attcaattac ggctattatc ccatattttg gctatgcgag acaagataga
     3361 aaagcaaatc ctagagtgcc aattactgct aaacttgtgg ctaatttgat tcaagcagct
     3421 gggattgatc gcgtagctac gatagatttg catgcaggac aaattcaggg tttttttgat
     3481 attccagtag ataatcttta tggaagtata gtttttaatg attacattaa agccaaacat
     3541 tttaaaaatg ctattatagg aagtccagat atagggggtg ttgcaagagc taggagtgtt
     3601 gcaaagcatt taggacttga tatagttata gttgataagc gtcgtgaaaa agccaatgaa
     3661 agtgaagtaa tgaatattat tggagatgta aaagataaag aagttatctt agtggatgat
     3721 attattgata ctgctggcac tatagttaaa gccgcggaag ctttaaaaga aaaaggtgca
     3781 aaatctgtta tggcttgctg tactcatgca gttttaagcg gaaaagccta tgagagaata
     3841 gcaagtggag ttttagatga gcttgtggta acagatacta tacctttaaa agagcaatta
     3901 ccaaatatta aagtattaag cgttacacct gtttttgctg aagtaatacg tcgtgtttat
     3961 cataacgaaa gtgtaaattc tctctttatt tagattaaaa aagcttaaag attatt
//
LOCUS       DARGED010000121         3993 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.121, whole genome shotgun sequence.
ACCESSION   DARGED010000121 DARGED010000000
VERSION     DARGED010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.121"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            85..780
                     /locus_tag="SFZ84_001523"
     CDS             85..780
                     /locus_tag="SFZ84_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG8203614.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLSEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDGTADVVSN
                     DDIEALIASLGQK"
     gene            777..2030
                     /locus_tag="SFZ84_001524"
     CDS             777..2030
                     /locus_tag="SFZ84_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG8203615.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCNNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2031..2525
                     /gene="purE"
                     /locus_tag="SFZ84_001525"
     CDS             2031..2525
                     /gene="purE"
                     /locus_tag="SFZ84_001525"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG8203616.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2535..3071
                     /locus_tag="SFZ84_001526"
     CDS             2535..3071
                     /locus_tag="SFZ84_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG8203617.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3083..3946
                     /gene="glyQ"
                     /locus_tag="SFZ84_001527"
     CDS             3083..3946
                     /gene="glyQ"
                     /locus_tag="SFZ84_001527"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG8203618.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSVEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
BASE COUNT         1456 a          479 c          798 g         1260 t
ORIGIN      
        1 taaaaattta tatttttgtt ttagataaaa ttgattataa ttttgagcaa ttattgaaaa
       61 tctagattta aaaaagggaa aaaaatgact caagaagagc ttgatgcttt gatgaatggt
      121 gatgttgatc ttgattcaga gacagaagca gaggtaaaaa ccgaagaatc gaataccgaa
      181 gaagatgctt tgatgttaga agatgtcaaa atagctgatt acaaacctaa tcctagcgtg
      241 gtatggccac cacccccacc aaatcaggag cataaggttg tacatcagtt agatgatgtt
      301 acaaaagata gcgagcttaa agcaacggaa atgatggata agcttgaaag tattaataat
      361 ttttttgcgg attctgaaag tttactcaaa gagataaata aagcaataga aaaaaatatt
      421 gatatttttt ctaaacttag tgaaaaattt cctaatgtgg aaagtttcag tgaagcttta
      481 gaattaaaca atcaagctaa aaaaagttct aaggagattg tcggaaatct tcaaagcgga
      541 caagatgaag tgatgatggc aatggatgca atgcagtatc aagatataca tcgtcaaaaa
      601 atcgaacgtg ttattaatgt aatgcgtgct ttaagccgtt atatgagttc cttatttgaa
      661 ggtaaaattg atgataaaaa acgtgtaagt tctgcagtgc atattgaagg tgatggtact
      721 gctgatgttg taagtaatga tgatatagaa gctttaattg caagtttagg gcaaaaatga
      781 tcattcctga aatagtagct cctgcaggaa atttcacaaa attaaaaatt gctttagctt
      841 atggcgcaga tgcggtttat gcgggtgtga ataatttttc tttaagatca cgcactgcaa
      901 gagaatttaa ttatgaaagt tttgaagaag ctatcaaata tactcatgag cgtggtaaga
      961 aaatttatgt tactttaaat ggttttcatt tgagttctca aattgaaggt ttaaaaagac
     1021 atattttaaa attgcgtgag atgaaacctg atgcttttat tgtagcttct gttggagcta
     1081 tgcgtcttgt taaagaactt gcacctgaaa tttctttaca tgtttctact caggcaaata
     1141 ttttaaatta tttagatgct caagtttata aggatatggg tgctaaaagg gttgtaattg
     1201 ccagagaatt agggcttaaa gacgctaaag ctttaaagga aaattgcgat attgaacttg
     1261 aagcttttgt gcatggttcg atgtgttttg cttattctgg gcgttgttta ataagctctg
     1321 tgcaaagtgg aagaatgagc aatcgtggat cttgtgcaaa tgattgtaga tttaattatg
     1381 agctttatgc taaaaatcca gaaaatggca ctttatttcg tttagaagaa gatgaaaatg
     1441 gtactcatat ttttaattct aaagatttaa atctttgttc ttatatagaa aaaatcatgc
     1501 aagaaaattg tatcagtgct tttaaaatag aagggcgtac taaaagcgaa tattatgttg
     1561 cgcttacaac aaggacttat aaaatggcca tacaagatgc tttagagggt aaatttgagt
     1621 caagtaagta tgaaaaagag attgctacac ttaaaaatcg tggttttaca gatggctatc
     1681 ttgtttcgcg tcctttagaa aaaaccgaca cacaaaatca taatacaagc atagaagaag
     1741 gttctcatca agtgcatgct ataagcgaag atggaagatt ttttaaatgt aaagggaaaa
     1801 tcgttttaaa cacgccttat gaaattttaa cccctttagg cgatgtgatt caaacttgca
     1861 ataatgaact aggtaaaatt tatcaaaaag agggtaaata ttttatagag tttaaaaaac
     1921 ttattgctaa aaacaataaa gaatttagcg aaattcatag cggtaatgaa catgaaatcc
     1981 aattaccaaa taaaatcagt gcattaagtt ttttaagaaa ggaaatatag atgaattttg
     2041 tttctatttt aatgggaagc aagagtgatt atgagactat gaaagaggct gctaaaactt
     2101 tagaaagttt tggtgtaaag tatgaactta tcatctcatc agctcatcgt agtccaaaaa
     2161 gaacaaaaga gtatattgca aatgctgaag aaaaaggtgt gaaggttttt atagcagcag
     2221 ctggaatggc agcgcattta gctggagctg ttgcagctta tacaacaaaa cctgttttag
     2281 gagtgcctat gccaggaagt aatcttgcaa gtatggattc tttgttttct acggtgcaaa
     2341 tgcctagtgg aattcctgta ggaactttag ctattggtaa ggctggagca atcaatgctg
     2401 cttatttggc tatgcaaatt ttagctattt atgatgttga tttagcacaa aagcttaaag
     2461 aagatcgtct tgaaaaagaa aaaaaacttg tatctgattc aaaagaagta gaagttttat
     2521 tataagggat aaaaatgcaa acctatcttg aacttgaaga attttgtaaa cttgtgcatt
     2581 taaatgaaga tgtggttaag ggtatgatgg ccaatggggc tttaaatttt aaagaagaag
     2641 agggtaaaat ttacatcgaa gctcatcaag gtacttttag tgtagtgcct agttctgcaa
     2701 aatctcaaac tgcaatggta aattcaatga ctttagcagg agaaagtttt gttgaaaaaa
     2761 caataggaac tattttaaat ttacatgaaa aagttttaga tgctaaagat gaaacacttg
     2821 aagcattaaa aaatgaaaat aaatttttaa aagatgccct ttattctatg caagagcttt
     2881 atgatgaaga tagaaaaact atagaaacct taaacaatga gttaaaacat gcgcgtgaag
     2941 agatagaatt tctcaagcgt aaatataaat taatgtggag taaaactgca gaaatttttg
     3001 gagctaagac agagcctgat ttggaaatga ataaaaattt agaaaaacct attgaaaata
     3061 tggaacaata aagagagata caatgacttt ttcacaaatg atacttaatt tacaaaatta
     3121 ttggcaagag caaggctgtg cgattatgca accttatgat atgccagcag gtgcaggaac
     3181 ctttcatcca gcaacttttt taagaagttt aggaaaaaaa ccttgggcag ctgcttatgt
     3241 ggctccaagt agaaggccta ctgatggacg ttatggtgaa aatcctaatc gcttaggtgc
     3301 ttattatcaa tttcaagttt tgattaaacc tagtcctgat aatatccaag aattatatct
     3361 taaaagtctt gaaaatttgg gttttgattt aaaaagtcat gatattcgtt ttgttgaaga
     3421 taattgggag agtccaagtt tgggtgcttg gggtttaggc tgggaagtat ggcttgatgg
     3481 tatggaagtt actcaattta cttattttca gcaagttggc ggtatagcag tagatttagt
     3541 aagtgttgaa attacctatg gtcttgaaag aatagccatg tatcttcaaa atgttgataa
     3601 tgtttatgat atagtttgga gtgaatttaa tggagaaaaa attaaatacg cagatgtgca
     3661 taagcaaagt gaatatgaat ttagtaaata caattttgaa gtaagtgatg ttaaaatctt
     3721 aaatgagcag tttgaaaatt cttacaaaga atgtaaaaat attttagaac aaggactagc
     3781 tttacctgct tatgattatt gtatgcttgc tgcacatact tttaatcttt tagatgcaag
     3841 aggagcaatt tctgtagcac aaagacaaga ttatatgtta aaaattcgtg aactttcaaa
     3901 aaattgtgct gaaatttata agaaaaattt aaatgaagct gagtgaaatt tataattttt
     3961 tagatcaatt aagtcccttt gatatccgag aat
//
LOCUS       DARGED010000122         3983 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.122, whole genome shotgun sequence.
ACCESSION   DARGED010000122 DARGED010000000
VERSION     DARGED010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3983
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.122"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            89..1420
                     /locus_tag="SFZ84_001528"
     CDS             89..1420
                     /locus_tag="SFZ84_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HEG8203619.1"
                     /translation="MNSTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNEGFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
     gene            complement(1409..2212)
                     /locus_tag="SFZ84_001529"
     CDS             complement(1409..2212)
                     /locus_tag="SFZ84_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG8203620.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR"
     gene            complement(2205..3059)
                     /locus_tag="SFZ84_001530"
     CDS             complement(2205..3059)
                     /locus_tag="SFZ84_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEG8203621.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAIQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(3072..3962)
                     /locus_tag="SFZ84_001531"
     CDS             complement(3072..3962)
                     /locus_tag="SFZ84_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8203622.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDAL
                     IQKYPQNKNLYKQNLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKNKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
BASE COUNT         1491 a          558 c          574 g         1360 t
ORIGIN      
        1 gcttcatttg atgataaaat ttgggataaa atagaaatat atcaagcaat ttataatgat
       61 gaaatagcaa ataaattaaa aaacgaaaat gaatagcact ttttccatca tcgaatacca
      121 agctttttct aaagaagatt taaaagaaat tttcaaagaa aaggccgaag ggttttataa
      181 agagctagaa gactttgcaa aaaataatga aaatcttcta ggctttaaaa acaaaaattc
      241 cttaaaagct aaaaattatg tcggcattat acagactaaa agcggggttt tggagatttt
      301 gccaaaatgc acgaatttag atagttataa aaaagaagat agttcttcaa atcatgacaa
      361 agaaaaacta agaagatgtt atgaattaga caatatttct aaaaataatg atttttatga
      421 aaaagatttt aaatttaatc ctaaaaatct tttgataaat atgctaaaaa ccttaaaaaa
      481 ctcccccttt aaaaaatcgc aaatttcatc tttgcaaagt tctaaaattc ctttatttga
      541 agtgtttatc actatgtttt tagatgaatt tgatagcgta tataaaaaag gcttgatgag
      601 atcttatcta agttgcgaag aaaatagggc ttttttgaag ggaaaattac tatttaacga
      661 gcatatcaag cgaaatttga tacacaaaga aagatttttt acaagcaatg atgagtttgt
      721 tttagatata gcacccaatc gtttgataaa atcaacgcta aattttttaa aatcaaaaac
      781 aagtttgaat aaatttagac ttataaaagc catgcaaatg cttgatgagg tagaattttc
      841 taaaaattat gaaaaagatt ttagctataa aatttcaaga cattttgatt attatgaaaa
      901 cttgctttta tggtgtaaaa ttttcttaaa aaatgaaggt tttatgcctt atcatggtaa
      961 aaatgaagct tttgctttgc tttttcctat ggagaaaatt tttgaagatt atgtagctta
     1021 tatgctaaaa aaagtaaatc cagctcaaga tattaaagtt caaaacaatg gaaagtattt
     1081 aatctcaaaa aatgatgaaa attgtttcat gttaaagcct gatttatata tagaaaataa
     1141 aatgatccta gataccaaat ggaaaattcc aaatgatagt gaagatgaga aaaaacaggg
     1201 tatagaacaa agcgatttgt atcaaatgtt tgcttatgct tgcaaattta aaatttatga
     1261 tattaaactt gtgtatcctt tatgtgaaaa aactcaagat ttacaaagaa aaatcgcaga
     1321 aaaatttttt gtttttaagg caagcgaaca tttgtatttt aaagaacaag ggcaaaaaga
     1381 tataaaagtg caagtgtttt tcgcaccctt acctttttaa aaatttgcct atcaaatgca
     1441 ctaaaaaacc aaaacaagct acagctatga tgcaagcacc gcttgagaga ttaagataat
     1501 agctaagtat aagtcctaaa acacaaaaaa tcatacttaa aaaacttgcc aaaatcatga
     1561 taaagccaag tcttttagta aaattttcag caataaagct tgggatacta agtaaagcca
     1621 taactaaaat aagccctaca aggcgtatag aaataactat acaaaaagcc ataagggcga
     1681 ttaaaagata atgaaaaaaa cttgtattga taccacgaac ttttgcaaat tccgcatcaa
     1741 agcttaatgc ttcaaattgt ctataaaata aaaagatcaa aagcaccacc acgctatcaa
     1801 ccaaagccat aagccataaa tcttgtgttc ctacagccaa aatgctccca aaaagataag
     1861 ccattaaatc tgtgttataa ctagggctta aatcgattaa aataatccca acagccattc
     1921 caaaagccca tattacagcg ataatactat cacttctgtg ttcatagtgt ttagctaaaa
     1981 aagctactaa aaaagccaaa aataaagtaa atattcccgt gcttaataaa ataggcaaag
     2041 agaaataaaa agctatacct ataccaccaa aagccccatg tgttatacct ccagccatag
     2101 aaaaaaggcg atttatcatc accaaagtgc ctatgatccc acaagctata ctgactaaaa
     2161 tcgctcctag taaagcgttt tgaaaaaagg tgaaatttaa aatttcaagc attattttcc
     2221 tttgaaaatt ttaaacaaaa attttctttt ttaaattctg tttttttcaa atttcttctt
     2281 gtaaattctt gttcgcatag ttttttacta tcgcaatttt cttcatcgca aaaacaagta
     2341 tttaaactca tttctacatc acaaaaatga gagtggtttt cgtataagtg ttttaaaaat
     2401 gaactttttt ctttttcttt agtattggta tgcaagaaaa gttctttgtt taaatgtgca
     2461 attttatcgc tataagctaa tacaaggttg atatcgtgac aaatgagtaa aattcccata
     2521 cctttttggt gcaaggagct tagaagttca aaaatttgta tagcagactt gttatcaacg
     2581 cttgcggtag gttcatctaa aataagcatc ttacattcac tagctaaggc tcttgcgata
     2641 aaaacacgtt gtctttgtcc cccgcttaga gaatcaattg ttttgttcca aaatttttcc
     2701 attcctacgc tttttaaagc ttgtatagct ttttctttat cttttttccc ataaaaacca
     2761 aaaatttttt tacttacaag tcccataaga acgatttcaa gtactcttgg acaaaaatta
     2821 ggattggcta gagtgtgttg aggaacatag cctatttctt ttctttgaag agctttgaag
     2881 tggatttcat ttttggattt taaaagtcct aagataagtt ttacgagtgt tgattttcct
     2941 gcgccatttg gacctatgat agagagaaag tctttattgt catagctaag attgatgttt
     3001 tttaagatga tttcattatt ataagcgtag tttagattag aaatttcaaa aaaaagcatc
     3061 aaaaaacctg attataaatt atgagaaaag gcatcagcag tttttaaaag ctcattttcc
     3121 caatcataag ataaatgatc tattttgtaa atttttgcat cacattcttt agcaagtgtt
     3181 tttgctgcat tttcagggaa accattttga acaaaaatga cttttaaatt tttatttttc
     3241 attagagtga taagtttttg caaatctttg ctttttggtt ccttgcctaa aatttctaca
     3301 ggaatttgcg taagattata gcgttttgca aaatatgtcc aagaaggatg ataaactaca
     3361 aattctctat tttttaattt ttctaatttt gaggcaattt gtaaatttaa actatctaat
     3421 tctgctaaaa atttatctaa attttgttta tataaatttt tattttgtgg atatttttga
     3481 atcaaggcgt cataaatatt taaagccata gtttggacta aaataggatc tagccaagta
     3541 tgaggatcaa aatgctcatg ttcgtggtgt tcatgctcat gagagtgttc gtgtgtatca
     3601 tgagtttgaa tcaaagctat gtttttttgc atatttacaa cttgaagttt tgaaaaattt
     3661 tgtttaaatt tatccgtaaa aactttttca aattctaagc ctatagtgaa ataaatatca
     3721 cttttttcaa gttttttcat agtacttggt ttaaattcaa aattatgctc attgctattt
     3781 gggggcaaaa taacattgac atctagagta tttgcagcta tttttttaac aaaaaatgct
     3841 tgaggtgcta tactgacact aactaaattg ctactagtat tttgttcttg ctctaaattt
     3901 ttagcttgtg tgaaagtata aaatatccct aaagataaaa taaataatag aatttttttc
     3961 aaaatatttc cttcgatata aat
//
LOCUS       DARGED010000123         3942 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.123, whole genome shotgun sequence.
ACCESSION   DARGED010000123 DARGED010000000
VERSION     DARGED010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3942
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.123"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            14..1009
                     /locus_tag="SFZ84_001532"
     CDS             14..1009
                     /locus_tag="SFZ84_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8203623.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            1019..1933
                     /gene="pstC"
                     /locus_tag="SFZ84_001533"
     CDS             1019..1933
                     /gene="pstC"
                     /locus_tag="SFZ84_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG8203624.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            1930..3018
                     /gene="pstA"
                     /locus_tag="SFZ84_001534"
     CDS             1930..3018
                     /gene="pstA"
                     /locus_tag="SFZ84_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG8203625.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQIAEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDSTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3015..3755
                     /locus_tag="SFZ84_001535"
     CDS             3015..3755
                     /locus_tag="SFZ84_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG8203626.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            3816..>3942
                     /locus_tag="SFZ84_001536"
     CDS             3816..>3942
                     /locus_tag="SFZ84_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8203627.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVC"
BASE COUNT         1309 a          536 c          771 g         1326 t
ORIGIN      
        1 ttaaggagaa aaaatgaaaa aaattctatc tttaagtgtg gcaagtcttg cactttgtgg
       61 tgctttaaat gcagcagatt taaaaatcgc aggttcatcg actgtgtatc cttttacttc
      121 ttttgtagct gaagaatatg cttcgattaa aaatacaaaa acccctatag tagagagctt
      181 gggaacaggg ggtggattta aggtattttg tgaaggaact actgatattt ctaatgcttc
      241 aagacctatg aaattaagcg aatttgaaac ttgcaaaaaa gcaggggtaa ctgatatagt
      301 agggatgatg ataggttatg atggtatagt tttagctcaa aataaaacca atgctccatt
      361 aaatatcaca aaaaaagaac ttttcttagc attagcaaaa gaaattccac aaaatggaaa
      421 acttatacca aatccttata caaactggaa tcaaatcaat aaaaatttac caaatcgtaa
      481 aattagtgtt tatggtccac catcaagttc aggaacaaga gatactatag aagagcttgt
      541 aatgagtgat gtgtctaaaa aaattcctga gtataaaggc gagtataaaa ccatacgcca
      601 agatggtgct tatatcccaa gtggtgaaaa tgataatcta atcgtttcca aacttactat
      661 tgataaggat gcttttggaa tttttggtta tagcttttta gtgagcaatt cagacaaaat
      721 caatgctgct aatatcgatg gtgttacgcc aagcgaagaa agcatcgcag atgaaaaata
      781 cgaacttgca agaagtttgt ttatttatat caatgctaag aaaaatccaa aagaagcctt
      841 tgattttgca aaaatttata tgagtgatga tttggcaaaa agtggtggag agcttgaaaa
      901 aataggactt gttcctttga gtgatgataa attaaaagct tctcaaaaac acgtagaaga
      961 tagaaaaatt ttaaatgatg agcttgtaaa agctggaaaa gttttttaag gaaaaacttt
     1021 gttaaaagaa aaaataatca aatttgcact ttttttatgt gcttttgtaa gcgtgatagt
     1081 aagttttgct atcatgctta caattttaat tgaagcttta aaattctttc aaaaagaaag
     1141 cgttgttacc tttttattct caagtcagtg ggcagctgat gcagctttta tgaatgcaga
     1201 tggcacgagt aaacaaggtg tttttggggc gctatcgctt ttttggggaa ctttttatat
     1261 ttcattgatt gctatgctaa cggctttacc tttaggggtt atgtgtgcta tatatttagg
     1321 tgtttttgct ggcaaaaaat ctaaaaatta cttaaaacct attttagaaa tcattgcagg
     1381 gattcctact gttgtttttg gattttttgc ggctatagtt gtagcgcctt ttatagtgtg
     1441 gtttttttct ttatttggca tacaagcaag ctttcaaagt gctttaggcg caggttttat
     1501 catggggatc atgatagtac ctatagtggc ttctttatct caagattgca ttgaagcagt
     1561 aagcgagaaa aggattaatg gcgcttatgc tttaggtatg acaaaaaaag aagtggtttt
     1621 tgccgtgatt ttacctgagg ctattcctgg tatagttgca gcttgtcttt taggactttc
     1681 aagagcctta ggcgaaacta tgatagtggt gatggcagct tctttgcgtc caaatttaac
     1741 tttaaatttt ttagaagata tgacaacggt aacggtaaaa atcgtagaag ctttaagtgg
     1801 agatcaagct tttgatagtt ctttggcttt aagtgctttt tctttaggtt tggtgctttt
     1861 tgtcatcact ttaatcatca atatgtttag cgtttatctt atcaatcgct ttcacaaaag
     1921 gaaaaattta tgaaaaaact ttttaaaaaa agacaaaaag cttcaaagtc ttttaaaaga
     1981 ctttgtaaaa tggggcttta tattaattta atttttcttt gtatcttttt aggaagtgtg
     2041 gcttatcttg gatttcctgc ttttaagcaa acctatattt ttgtagaggc taatagaaat
     2101 tctcctgctt atgatctttt atctcgcgca gaacaaagaa aaataagaac aggacaaatc
     2161 gctgaaaaat cttggctttt ggcaaattca gaagtagatc aatatatgaa gcaaaaatat
     2221 aatcgcctta gtgaaaaaca aagaacttta gtcgatgatc ttgtgcaaaa aggcgagata
     2281 gagcttaaat ttaatagcaa tttcttttta aatggggact caaaatctcc tgaaaattca
     2341 ggaattttat cttcagttgt agggactttg cttgttatgc ttgtttgtat ggttgtgagt
     2401 gttcctatag gcgttgcagc ggcaatttac ttagaagaat ttgcgccaca aaatatcctt
     2461 acacatttta tagaagtgtg tattaacaac cttgcaagta ttccaagtat cttgtttgga
     2521 cttttaggac ttggagtgtt tatcaatctt tttggaatgc ctcgctcaag tgctttagtg
     2581 ggtgggctta ctttggcgat catgagttta cctattatca ttgtttcaac taaggcagct
     2641 ttaaaaagtg tggatattaa catgaaaaat gccgcttatg ccttaggtat gactaaggtt
     2701 caaatggtaa aaggcattat gctaccttta gctatgccta tgattttaac aggttctatt
     2761 ttgactttag caggggctat aggcgagact gcgcctttga tgattatcgg tatgatagcc
     2821 tttatccctg atgtagctag ttcgattttt gattcaacta gcgttttgcc tgctcaaatt
     2881 tactcatggt cggctatgcc agagcgtgca tttttagaaa gaaccgcagc gggtattatt
     2941 gtgcttttag gacttttagt tgtgttaaat cttagtgcaa tattattaag aaaatatttt
     3001 caaggaaaat taaagtgata gcaaaaacaa caaatttaaa tttattttat ggaaaaaaac
     3061 aagctttatt tgatatcaat atgcaaatag aacaaaacaa aattactgca ctcatcggtg
     3121 cttcaggatg tggtaaatcc acttttttgc gctgttttaa tagaatgaat gataaaattg
     3181 caaaaatcga tggtttagtg gaaattgaag gaaaagatgt taaaaatcaa gatgtagtag
     3241 ccttgcgtaa aaatgtaggc atggtttttc aacaacctaa tgtttttgta aaaagcattt
     3301 atgaaaacat ctcttatgca ccaaaacttc atggtatgat taaaaacaaa gatgaagaag
     3361 aagctttggt ggtggattgc ttgcaaaaag tggggctttt tgaagaggtt aaagataaat
     3421 taaagcaaaa tgccctagct ctttcaggcg gacaacaaca acgtctttgt atcgcaagag
     3481 ctttagcgat caaacctaaa cttttgcttt tagatgagcc aacttctgca cttgatccta
     3541 taagttcagg cgtgattgaa gagcttttga aagaattaag ccataatctt tctatgatca
     3601 tggttacgca taatatgcaa caaggcaaac gcgtagctga ttatacagca ttttttcacc
     3661 taggtgagct tatagaattt ggagaaagca aggaattttt tgaaaatcca aagcaagaaa
     3721 aaaccaaagc ttatttaagt ggtgcttttg ggtgagattt attttttgga aatttgatga
     3781 tataattaat taaaaatttc aaaaaaaggt ttaatatgat tataaaccaa atttattcta
     3841 tagattcttg tgatgatgta gaattaaata tcaaaagggg aagtaaatta gaatttagat
     3901 tgacttatga tgatagtaaa gaaatagaag ctattgtttg ta
//
LOCUS       DARGED010000124         3934 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.124, whole genome shotgun sequence.
ACCESSION   DARGED010000124 DARGED010000000
VERSION     DARGED010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3934
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.124"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..738)
                     /locus_tag="SFZ84_001537"
     CDS             complement(<1..738)
                     /locus_tag="SFZ84_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8203628.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKL"
     gene            817..1245
                     /locus_tag="SFZ84_001538"
     CDS             817..1245
                     /locus_tag="SFZ84_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEG8203629.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWAKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKFCKES"
     gene            complement(1254..2283)
                     /gene="acr3"
                     /locus_tag="SFZ84_001539"
                     /pseudo
     CDS             complement(1254..2283)
                     /gene="acr3"
                     /locus_tag="SFZ84_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter Acr3"
     gene            complement(2277..2699)
                     /locus_tag="SFZ84_001540"
     CDS             complement(2277..2699)
                     /locus_tag="SFZ84_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HEG8203630.1"
                     /translation="MKLAFICIHNSCRSQMAEALARHKAEKMGVDIEVFSAGSDTSKG
                     VNSQAIRLMREIYQIDMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLK
                     DPSGSYDDEFKKIIQILDYKITALLQAIKTNSLNDFTC"
     gene            complement(2696..3013)
                     /locus_tag="SFZ84_001541"
     CDS             complement(2696..3013)
                     /locus_tag="SFZ84_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8203631.1"
                     /translation="MQKFLTIISAINDESRVLILYHLLKYQELCVCDLQKLLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDNIVLEQNTCE
                     NDK"
     gene            complement(3023..>3934)
                     /locus_tag="SFZ84_001542"
     CDS             complement(3023..>3934)
                     /locus_tag="SFZ84_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEG8203632.1"
                     /translation="YLFTELSVLFIAISFLVSIINQKYEGIFKKQLAGDKISSYFKAI
                     FLGALTPFCSCSTIPLLRAFLEAKVKLSVALAYLFTSPLINPIIFSMLFITFGLKLSL
                     TYVVFLVFLIFIVSFVFSKFKEESFLKHIPKNTKSNIFTQTTHNPSNFIFKQKSCCAN
                     TQDKPKNITINYKELFKESLKNYKKLLPYIVVAVFIGAFIHGFIPQEILQKYLNGNEI
                     LSIILAAFFGVLLYLRVETIIPIGLILLQMGISQGVIMSFLIAGAGCSLPELVLLKQM
                     FKMKFLLLFISIILSVAISFGMLINFI"
BASE COUNT         1504 a          559 c          585 g         1286 t
ORIGIN      
        1 gagtttatat gcatttagaa caggagaatg atcaatggat ggatttaata attctttatt
       61 ggttgctgca aatattttat ttttttgatc aaataaaaaa gtatttccag gggtttttgc
      121 aactaaattt tgcaaatctt ctgatggtat atcgacaccc agtaccccta tgattttacc
      181 atctttataa atagctttag aatacgttat tacatattgt tttaaaactg tatctaaata
      241 tgctggtgta acaaaaatat catttgtttt taaagcttct tgataccaat cttttgtctt
      301 tatatctaaa tcatcacgta attcaggcat ttttgcatca ttagattttt gactaagtaa
      361 aacttttcca ttgtttaaac ctaaataaac atttagtgca tttatactat gacgataata
      421 tttcaatatt ggaccaacat tgttaataat attttcttca gtgattaaag attgataagg
      481 taagttcgcg atatcttttt ctaaagctct agtaaaagat tgatttgtgg aacggaaatc
      541 ttcaacggta gattgtgtga ctttaagtag gtcagtttga tttttaagag tgctttcata
      601 tagtgaggtt tttgtaaaat aaaaacttac aatacctaga acaattaagg caaaaattgc
      661 aattaaattt gcaatgaggg aaagtttgat tttaatacta ttcattattt tccttttaat
      721 ttttgttatt tttagcataa aactaaataa tttggctatt attttatcac aaaaaaataa
      781 aataaatttt tatttttatc ttaaaaagga gaaaatatgg cttatactat aaaaaaagta
      841 gaaaaagaaa caaaaattag tgctcatact ttaagatttt gggctaaaaa aggtttgttt
      901 ccttttgttc aaaaagatga aaatagtgtg aaatattttt caaaaagcga tatagaatgg
      961 gcaaaatgga tagaatggct tagaatttca ggtatgccaa tagaacaagt caaacattat
     1021 ataaaacttt gctctttggg tataaaaact gccaaagaga gacaagagat gttaaagcaa
     1081 acaaagaaaa aattacaaaa ccagattaaa acattaaaag aaagtgaaaa agttttaagc
     1141 aaaaagataa aaatttatga agaaatgctt gcaaatgaag tcgatgggtt taatccagaa
     1201 agcaaggact atcaaccttg cgataagttt tgcaaagaat catgaggctt gattcatttt
     1261 ttagaattta aacttttgcc taatgcccat tttacaagta agataagtac agaaacttct
     1321 actaaggggc ctataatgct tgcaaaagct tgttctgagt gaagcccaaa agtagcaata
     1381 caaatgatta tagctaattc aaagttattt ccactagcac taaagcataa agaacaagtt
     1441 ttaggataag aaagatgatt tttcttagaa ataaaccaag ttagaaaaaa catgaagata
     1501 aaatacaaag tcaaaacaaa ggctattttt aaagcttcta aaggcaggtg aaatacttca
     1561 tttgctttgt aagaacacat aatgataata gttgctagca gggtgataag agttataggg
     1621 ctgattttag gtaaaaaggt attttcgtac catcgtttgc ttttgtattt taaaagtagg
     1681 gttcttgtta taaaacccat taaaaaagga attcctaaat aaatcaaaac attgttactt
     1741 agagctgaaa aatctatatc taaacttgta gctaaagtgc tttgacctag taattttggt
     1801 aaaaaatcca gataaatata agccaaagtg gaaaaaaata aaatttgaaa aatgctattc
     1861 atcgctacta aagcactggt gtattctcta tcaccttttg ctaaatcgct ccataccacc
     1921 accattgcga tacatcttgc caagccgatg atgataactc cttgcatata taaaggctcg
     1981 tcttttaaga aaataaaagc taagataaac ataagcaaaa gggcctataa accaatttaa
     2041 aatcatagaa agcaagataa cttttttaga atcaaatacc tttgaaagct ttgcataatc
     2101 aaccttagcc aaaggcggat acatcatcaa aataagacat aaagtcaata ctacatttac
     2161 agacttgtac tcaaataaat tccaaaataa agcgatattg gggaaaatga tacctaaaat
     2221 taaacccaaa aaaatagcta aaaatatcca aagcgtgaga aatctatcga taaaacctaa
     2281 catgtaaagt cattaagaga atttgtcttt atggcttgta aaagagctgt tattttataa
     2341 tctaaaattt gaattatttt cttaaattca tcatcataac ttccgctagg atcttttaat
     2401 ccaaaatcaa aataatacct tgattttaag ctaggacaag ccacgccaca acccatactt
     2461 acgactatgt ctaaattttg aggcaaagaa tcaatgagtt tagaataatg ctttttcata
     2521 tcgatttgat aaatttcacg cataagtctt atagcctgtg aatttacacc cttagaagtg
     2581 tcgcttcctg cggaaaatac ttcgatatct acgcccattt tttcagcttt atgcctagct
     2641 agtgcttctg ccatttgaga acggcagcta ttgtgaatac aaataaatgc aagtttcatt
     2701 tatcgttctc gcaagtgttt tgttctaaaa ctatgttgtc aatatctaga tttttaatat
     2761 tttcaaaaag gtcagaatgc agttttaaaa gctcattgtt gataccataa tacgcccaag
     2821 ttcccttacg cttgacatat aaaaatcctg catcttttaa aatttttaaa tgtcttgaaa
     2881 gtcttgattg ccccatgttt aaaagttttt gcaaatcaca cacgcacagt tcttgatatt
     2941 ttaaaagatg gtataggata agcactctgc tttcatcgtt gatcgctgaa atgatggtta
     3001 aaaacttttg catttatttt ccttatatga aatttataag cataccaaaa gatatggcta
     3061 cgcttaaaat gatagatata aacaataata aaaatttcat cttaaacatt tgcttaagta
     3121 aaacaagttc gggtaaagaa caccccgcac ctgcgattaa aaaactcata atcacacctt
     3181 gagaaattcc catttgtaaa agtatcaagc ctatagggat gatggtttct actcttaagt
     3241 aaagcaaaac tccaaaaaac gctgctagga taatgcttaa aatttcattg ccatttaggt
     3301 atttttgtaa aatttcttga ggaatgaaac catgaataaa agcaccgata aaaactgcca
     3361 caacgatata gggtaataat tttttataat ttttcaaact ttctttgaat aattctttat
     3421 agtttatcgt tatattttta ggcttatctt gagtatttgc acagcatgat ttttgtttaa
     3481 aaataaaatt gctaggattg tgagtggttt gggtaaaaat atttgatttt gtatttttag
     3541 ggatatgttt taaaaaactc tcttccttaa atttggaaaa aacaaaagaa acaataaata
     3601 tcaaaaatac caaaaaaacc acataagtca aacttaactt taaaccaaaa gttataaaaa
     3661 gcatggaaaa aatgatagga ttaataagag gtgaagtaaa aagataagct aaagctacgc
     3721 taagttttac tttcgcttcc aaaaaagctc ttaaaagcgg tatggtagaa caggaacaaa
     3781 atggcgttaa agcacctaaa aatatagctt taaaataact tgaaatttta tcaccagcaa
     3841 gttgtttttt aaaaattcct tcgtattttt gattgataat agaaactaaa aaagaaatag
     3901 ctataaaaag tacagaaagc tcagtaaata gata
//
LOCUS       DARGED010000125         3750 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.126, whole genome shotgun sequence.
ACCESSION   DARGED010000125 DARGED010000000
VERSION     DARGED010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.126"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..183
                     /locus_tag="SFZ84_001543"
     CDS             <1..183
                     /locus_tag="SFZ84_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203633.1"
                     /translation="FKNIKDFKIASKNSLFCDFSYNQLSDLRKLKNFKYCLILENYDI
                     FEQEFENKENQTPSLF"
     gene            complement(175..627)
                     /locus_tag="SFZ84_001544"
     CDS             complement(175..627)
                     /locus_tag="SFZ84_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG8203634.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            682..3228
                     /locus_tag="SFZ84_001545"
     CDS             682..3228
                     /locus_tag="SFZ84_001545"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG8203635.1"
                     /translation="MSFIQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRQGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     TMPLNIPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIKSVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLIN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            3288..>3750
                     /locus_tag="SFZ84_001546"
     CDS             3288..>3750
                     /locus_tag="SFZ84_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203636.1"
                     /translation="MKLLFASFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFE"
BASE COUNT         1377 a          562 c          658 g         1153 t
ORIGIN      
        1 tttaaaaaca taaaagactt taaaattgct tctaaaaatt ctttattttg cgatttttcc
       61 tataatcagc tttcagattt aagaaaatta aaaaatttta aatattgttt aattcttgaa
      121 aattatgata tttttgaaca agaatttgaa aacaaagaaa atcaaacccc aagcttattt
      181 taaattcact ccttcatttt caagcaaaaa tctttttatt tcaagccctc cattatatcc
      241 tcctatgcca ttgtttgcaa taactctatg acaaggtata aaaataggaa tttgattttt
      301 agaatttgca tttccaacag ctctaaaagc ttttggatga ttaatttttt ctgctatatc
      361 tttataagta gctattttgc cataaggaat ttccattaaa gccttataaa cctttgattc
      421 aaaatccgta ccttgtatca aaacaggaat gctaaatttt ctaagcttat gagtaaaata
      481 taaatcaagt tcatattttg ctaagtcaag caaactacaa tttttttctg atcttttatt
      541 atcacaaaaa tcgactctag ttaaaaattt tccatcacta tgtaaagata ggtaacataa
      601 aggcatttta taataaactt taaacatttt ttatccttca aagagctaca attataataa
      661 aaaatattta aggagtagaa aatgtctttt atacaagaat acaataaact tgttgaagaa
      721 agagccgctt tgggtatacc accccttcct ttaaacgcaa atcaaactag agaactttgt
      781 aaattacttg aaaatgaaaa taatgaagag cttgcaaatc ttttagaaaa tagagtaaat
      841 cctggtgttg atgatgcagc tttagtaaaa tgtgaatttt tagattccat acttaaaggc
      901 aaaatcagtg ctccaaatat agacaaaaaa agagccttaa gaatgcttgg aactatgcta
      961 ggcggatata atgttaaagt tttaatcgat gccttaaaag atgaaaacat agccaaagat
     1021 gctgcagaag tgttgaaaaa tattattttt gtacatgata atttccatac catagctgaa
     1081 cttagcaaaa acaatccaca cgctaaggaa gttttacaaa gctgggcaaa tgcggactgg
     1141 tttaataaaa aagaaaaact accacaagtg attaaatgta tagtttttaa agtagcaggg
     1201 gaaacaaata ccgatgatct aagccctgca ggagatgctt ttacaagaag cgatattcct
     1261 ttacatgcaa atgccatgct aaaggtaaga caaacaggat ccttagaaaa aatcaaagag
     1321 cttaaaaaaa gcggtcgcga agtggtttat gtaggtgatg ttgtaggaac aggttcaagt
     1381 agaaaatcgg caataaattc catacaatgg cacttaggaa aagaaataga aggtgtgcca
     1441 aacaagcaca gcggtggtat agtaatgggt tcaaccatag caccgatttt ctttaacact
     1501 gctcaagata gcggggcttt acctatcatc tgtgatgtaa caaacttaga aatgggcgat
     1561 gagtttgaaa ttcatcctta tgatggaaaa atcataaaaa atggctctgc aatcgcagaa
     1621 tttacactca gtccaaacac tctcttagat gaagttagag caggaggaag aatcccactt
     1681 atcataggtc gtgggctttg tactaaggct agagaatttt taggaatgga aagcgaaaat
     1741 atctttacca aacctgaaca acctaaatct tcaagcggtg gttatacctt ggctcaaaaa
     1801 atgctaggtc gtgcctgtgg agttgaaggt gtgcgtcaag gtatgtatat agaacctata
     1861 actttaaccg taggctctca agataccaca ggtcctatga ctagagatga aattaaagaa
     1921 cttgcaagcc taggttttaa tgcagacttt gttatgcaaa gcttttgcca tacagctgcg
     1981 tatccaaaag taagcgattc aaatttacat aaaaccttgc ccaatttcat gacaagtcgt
     2041 ggtggggtaa gtttaaaacc aggtgatgga gttatccact cttggcttaa tcgttttgta
     2101 ttaccagata ctgtaggaac aggcggagat tctcatacac gctttcctat aggaatttct
     2161 ttccctgcag gaagtggact tgtggctttt gctgcggtta ctggtactat gcctttaaat
     2221 atccctgaaa gtgttttagt gcgttttagc ggggaattac aagctggagt taccttaaga
     2281 gatttggtta atgctatacc ttattatgca atcaaacaag gacaacttac cgttgaaaag
     2341 aaaaataaga aaaatatttt tgcaggaaaa attttagaaa tagaaggctt gccaaactta
     2401 aaagtcgaac aagcttttga actcagtgat gcaagtgctg aaagatctgc agctgcttgt
     2461 agtgtagatt taagcataaa aagtgtaagc gaatatatca aatccaatat ttctttaatt
     2521 gaagctatga tagaagcagg atatgagaat aaagctaccc ttgctagaag ggctgaaaaa
     2581 atgagagaat ggcttaaaaa ccctactctt ttaagagcag ataaagatgc aaaatacgct
     2641 tatattatag atattaatct taatgacatt aaagagccaa tcctagcttg tccaaatgac
     2701 cctgatgatg tggcaacctt aagtgaaatt ttagccgatg ataagcgtcc aaaaaatata
     2761 gatgaagttt ttgtaggttc ttgtatgaca aacataggac attatagagc tttgggagaa
     2821 attttaaaag ataaaggcat acttaaaacc agactttggg tagtgcctcc aacaaaaatg
     2881 gataaagcac aacttatcaa tgaaggttat tacagcatct ttggcgcagc aggtgctaga
     2941 atagaagttc ctggttgttc tttgtgtatg ggtaatcaag ctagagtaaa tgatggagct
     3001 gtagttttct caacttctac aagaaatttt gacaaccgta tgggaatggg tgctaaagta
     3061 tatttaggca gtgcagaact tgcggcagtt tgtgcgattt tgggtaaaat tccaagcaag
     3121 gaagaatact tacaaattgt tagcgaaaaa ctaagtgatg agcataaggc aaatatctat
     3181 agatatttaa attttaatga gattgaaaat ttcaaacttg aaaattaatt caaatttaat
     3241 acttatttgg attaaataac aaaattaaaa ttttcaaagg aaaaatattg aagttattat
     3301 tcgcttcctt ttgttgtttt gcaagtttaa tggctagtga tgccattaac tgcgacaaca
     3361 ttaaaaataa taaaacattg ctaaatgaaa gttcaaattt agattattta aatatagctt
     3421 caagctgtaa agaatcttta aaaaatcaag attttacaaa aaaactctat gcaatttcca
     3481 atgaaattcg cggaagcaat agctcttgta atggtgtggc ttatttgcca aaattacaac
     3541 aatttgattt tttattatta aaaatagcta tcgatcccat cgcttatcaa aaaactttag
     3601 atacacccga aaatttagaa aaaaaatatg atattttaaa atcttatttt agatattggg
     3661 catatcaaag tataggaaat tttagacttt acaaagcttt ttggaaagaa tacaataacg
     3721 ctatagaacc tttagaaaag tattttgaaa
//
LOCUS       DARGED010000126         3733 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.127, whole genome shotgun sequence.
ACCESSION   DARGED010000126 DARGED010000000
VERSION     DARGED010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3733
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.127"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(100..1146)
                     /locus_tag="SFZ84_001547"
     CDS             complement(100..1146)
                     /locus_tag="SFZ84_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG8203637.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDDATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            complement(1155..3329)
                     /gene="flhA"
                     /locus_tag="SFZ84_001548"
     CDS             complement(1155..3329)
                     /gene="flhA"
                     /locus_tag="SFZ84_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG8203638.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEERKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(3316..3726)
                     /locus_tag="SFZ84_001549"
     CDS             complement(3316..3726)
                     /locus_tag="SFZ84_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG8203639.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
BASE COUNT         1258 a          678 c          486 g         1311 t
ORIGIN      
        1 tctaattttt ctcttttaac tccagcgtat aaaagcatag cttctaaaac tatgctaagc
       61 tcatattgta aatcttctaa ttcatttttt aaggttttat tattgttttg attcattgtt
      121 ttccttttta agttctttgc ttttaattaa atcaataatt tgagccttaa tataattata
      181 atttgctcca tctttaaatg tcgcaaaaag tccaccacta gcatttttat gtccgccacc
      241 acctactaaa tttttagcca ttaaacttac atctattttt ccatttgcac gaaaacttaa
      301 ggtttttcta gaactaacat caataaaaaa gtcataatca ggatttttta ctaaaaaatc
      361 atttccaata acagaagtat tgcctatatt tgaagttaag atgcctttat ggccttcata
      421 ttctatgctg aaattttctt ttagctcact tagtttttca actacaaaat aagaaattaa
      481 attagaaaga gtatcatcat tttttctggc aaaataatcc ttttttataa aatgagtagc
      541 atcatcgagt aaaatatttg cattttcttt tcctataaat ttccaagcct tatcaagcaa
      601 gaaaaacata taatcaattt gagattcttt aaacattaca cgatttattt cttttgcatt
      661 ggcaatcaag cctaaaaaaa cctttccaag ttcaaaattt tcatcctcgc ttagccaaat
      721 atcaacagca ttaaccacat caacaaattt tgaaagttct aaaacaggag tacagatttt
      781 agagaaaaaa tcataaacga ttttagttgc acatctttta gaatcaagta aataccaaga
      841 atatttttga gcacattctt cgccactttg atgatgatca agaagaaaaa ttttagtatt
      901 tttctctttg caaatttttt caaattcttc gcattgattt aaatttaaat ttaaatctgt
      961 tattagaata atagcttttc cgaaattttc atctttttct atatcgccta taatagagtt
     1021 aaaattttca ttaatttctt tgccataatt agaattataa aatttcacat ttttaaaata
     1081 aaaatttact ataaattgac aagcatagcc atcaagatct gtatgtgaaa gatgataaat
     1141 tttcattata ttccttaaag ttctatccta ataataccct cggtattaaa atttgtattt
     1201 tctgcaattt ctgcaaaact taacactact atattaatgc taaaattata acaaatatca
     1261 gcaatgaatt ttctaagctg cggttcaacg caaagtataa aaggcttgat acgaccattt
     1321 gctactgcgg caacttcagc ccttagagta tctactaaag tacctgtttg agctacactt
     1381 aaaggcaagt gataacttcc atctctaaat tgtacatttt ccattaaaac cgcagaacta
     1441 gcagagtcta agataaaaat atccaaattt cctttatcat ctaaatacat atttgtaatc
     1501 atcctagcta aggacgccct tacatgttca ataatcatat caaaactctt gcttacttct
     1561 gctatatcgc ttacagattc taaaatagta agcatatctt taattggtat gtgatgctta
     1621 agcaagtctt tgagaatttt ttgaataaga cttacaggtg caacacctaa agcaccttct
     1681 acgatgattg gataatcatt tttaacctta tcaagaagat tttgtacctc ttggcgtgtg
     1741 agaagttcgc ttgcgtgtgc tttgataagt tcgctcatat gtgttgaaat aacacttgca
     1801 ggatctatta ctatatagcc atttaacgtt gcttcatctt ttaaattcgc atcaatccaa
     1861 agtgcatcag agttaaaagc gggttctttt gtagcaatcc cttctatctc ttctgtgata
     1921 aaaccactat ccatggctaa atatttatcc ggataaattt cagcacttgc tatagacacg
     1981 cccttgagtt taaaactata ctcatttggt ttaagtctta aattatctct tattcttatt
     2041 tttggcatta aaaatcctaa actttcagca atacttcttc tcattgagcg aattctttct
     2101 gtaagttcgt tttcagcaag cttaataagt ccgtatccaa gttcaagttc taaaatttca
     2161 actttgagta tatcgttaat cttgcgctct tcttctttga gaatttcttc ttcgcttttc
     2221 ttagcaggcg ctgccgttgt cccacctgct ccactttgag atgcagctgc ggcacttggt
     2281 ttgctttttt taactgtagt tatatcaatt ttaccttcct taacctgctt ggtaagatag
     2341 ccaaggctta aaaatactaa agccataaag cccaaggata aagttggcaa accaggcact
     2401 aacgcaaaga taaaaagtac aaaacctact attaaaagcg tgcgatattc gcttaaaagt
     2461 tgagttaaag ttccttctgc aaaattttcc tcatctttgc ttgcacgagt gataattata
     2521 gcggttgcag tagaagtaat aagtcctgga atttgagata caagtccatc acctatggtt
     2581 aaaatagtat aagtagatgc agcatcgctt aaagccatat cgtgctgaaa agatcctatt
     2641 aaaaaaccac ctatgatatt tataatagtt atgataatcc ctgcaacagc atctcctttg
     2701 ataaatttag aagaaccatc cattgcacca tagaagtttg cctcagcaat aacttcttga
     2761 cgtcttgctc tagcggtttg ttcatcaata agtcctgcat ttaaatccgc atcaatagcc
     2821 atttgtttac ccggcatcgc atcaagtgta aatcttgctt gtacttcaga aacccttgta
     2881 ctaccttttg ttacaaccat gaaattaatc aatactaaaa tacaaaatac aatcacgcca
     2941 atgaccatat ttccaccaac aacaaattct ccaaatgctg ctataatctc actcacagct
     3001 tcagggccgt tttgcccttc gcttaaaatc atccttgtgg tagctatatt taatgaaagc
     3061 ctaaataaag tgataatcaa gattaaagtt ggaaaagttg ttaaatctgt cggtttgggt
     3121 atataaatag aaattaaaat aattaatacc gataaagcta tacttaaagc caagaaaaag
     3181 tccaaaatag gacttggtaa aggaactata ataatagcta aaatacaaac taaaaaacca
     3241 acaatagtca agcttttagc ttttaaaaca ggagcgatta aaggccccaa gaaaggaaaa
     3301 actaaatcga ctattttatt ttttgccatt atttttcata atatcttcta aagtaataga
     3361 atctaaaaat tcatctactt tattttgtaa atttactaac ataggcatta aggtgcaatt
     3421 ttcttcttta ttatttggac aagtgccacc actgcattca aatacactga tatccttttt
     3481 ttcagcacta ttaacaattt cttttatagt atattgactt ggttctttga ttaaaacaaa
     3541 accacctttt gcccctttaa aggattttaa caagccatct ttagctaaag tttgtaaaat
     3601 tttagctaaa aaacttttag gaatatcaag ctctaaagct aaagaatcta catcttgagg
     3661 tgtttctttt tgagaaatat aaattaaaga aagtaaagcg tattcgctag ctttggtaaa
     3721 tagcacagat tct
//
LOCUS       DARGED010000127         3724 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.128, whole genome shotgun sequence.
ACCESSION   DARGED010000127 DARGED010000000
VERSION     DARGED010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.128"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            24..1205
                     /locus_tag="SFZ84_001550"
     CDS             24..1205
                     /locus_tag="SFZ84_001550"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG8203640.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDYILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1215..2186
                     /locus_tag="SFZ84_001551"
     CDS             1215..2186
                     /locus_tag="SFZ84_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG8203641.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2209..>3724)
                     /locus_tag="SFZ84_001552"
     CDS             complement(2209..>3724)
                     /locus_tag="SFZ84_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG8203642.1"
                     /translation="NLVYFNIVESFYSSLFELEKLFKNTASSEDLIATVDKAMENLQN
                     SSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLESNYIFSL
                     LELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQFFYRNKN
                     DVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVYAVLIAWL
                     ILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGFNISAIIA
                     SLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETGLRKTTIR
                     TFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVKDLREFLH
                     TSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSINIELYFY
                     IKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAKAIK"
BASE COUNT         1341 a          568 c          657 g         1158 t
ORIGIN      
        1 aaggataaat taaggatttt aaagtgaaag tatatttaga taacaacgca acgacaatgc
       61 ttgatcctaa tgcttatgag ttgatgctac cttttttaaa ggatatgtat ggaaatccaa
      121 atagccttca tcaatatggt agcgcaacac atcctgcctt aagagaagct ttggataaac
      181 tttatgcagg acttggagca aatgacctag atgacataat tgtaacctcc tgtgcgacag
      241 aaagcattaa ctgggtgctt aagggtgtgt attttgatta tattttagat aaagaacgca
      301 atgaagtgat tatttctagt gtagaacacc ctgctgttac tgctgctgct tattttttaa
      361 aaagtcttgg agtaaaagtc atagaacttc ctgtaaatga agaaggagtt tctactgtag
      421 aagatttgcg taaagtgatt agcgataaaa cagcacttgt aagtgttatg tgggcaaata
      481 atgaaacagg tatgattttt gatattaaag cgatggcaga acttgcgcat gaatttggtg
      541 ctctttttca tacagatgct actcaagcag taggtaaaat aaaggttaat ttaactcaag
      601 taggagttga ttttgcttca ttttcggcac ataaatttca tggaccaaag ggtgtgggtg
      661 gactttttat aaaaaaagga cttaagctta ctccactttt acacggtgga gaacacatgg
      721 gtggtcgtag aagcgggact ttaaatgtgc cttatatagt ggctatgggc gaggctttgc
      781 gtattgcaaa tactatgctt gattttgaag attctcatat acgccgttta agagataaac
      841 tagaagatca aattttagcc ttgcctgata caacagtggt tggaaaaaga gaacaccgtg
      901 tgcctaatac aatcttagca agtattaaag gagttgaagg cgaagcaatg ctttgggatt
      961 taaataaaaa tggtatagct gcaagtacgg gctcagcctg tgcaagtgaa gctttagaaa
     1021 gcaatcctat tatggaagct atcggtgcgg agcatgattt agcgcataca gctttaaggc
     1081 tttctttgtc acgttttaac actgaagaag aaattgatta tgcagcaaaa caaattaaaa
     1141 atgcaacaca gagattaaga gcaatttctt gtacttatgc ttataatcca aataattaca
     1201 aataaggatg aaaaatggga aaaaatagtt taattggtgg atccatttgg gatgagtatt
     1261 cacaaaaagt tcaagataga atgaataatc ctcaacatat gggagaattt agtgaagaag
     1321 atgctaaagc acgcaatgca aaattgatcg tagctgattt tggcgcagaa agttgcggcg
     1381 atgcggtaag acttttttgg cttgtagatg aaaaaactga taaaattatc gatgcaaaat
     1441 ttaaaagttt tggttgtggt acagctatag caagtagtga tactatggtg gatctttgta
     1501 taggaaaaac tgtagatgaa gcagtaaaaa tcacaaattt agatgtggaa tttgctatgc
     1561 gtgataatcc agaaactcca gctgttccac ctcaaaaaat gcactgttcg gttatggctt
     1621 atgatgtaat caaacaagca gcagcgcatt ataaaggcat aagtcctgaa gattttgaag
     1681 atcaaattat agtttgcgag tgcgctaggg taagtcttgg aactattaaa gaagtgatta
     1741 aacttaatga tttgcatagc gtagaagaaa tcacacaata cactaaagcg ggtgcttttt
     1801 gtaaatcctg tatcaaacca ggcggacatg aaaaaagaga ttattacctt gtagatattt
     1861 tagctgaaac tagagctgaa atagatagag aaaaactcaa aaatacaatg aaaagtgatg
     1921 tagcttttga tgaaatgacc gtagtgggac aattaaaagc agttgaaagt gttttagatg
     1981 ctgaaattcg ccctatgctt cataatgatg gtggagattt ggaagtgatt gatatacaaa
     2041 aggctgaagg tgcagcaatt gatgtttata ttcgttatct tggtgcttgt agtggttgtt
     2101 ctagtggaag tggtgcaaca ctttatgcta ttgaaacaat tttacaagaa gaattaagtc
     2161 caaatatacg cgttatgccg gtttaaaaaa tagcaagata aaatcttgct attttatagc
     2221 ttttgcttgc aaatcaaggg gtggtaaatt ttctatataa atactacgac ttgggaaagc
     2281 aaaggttaaa ccattttttt caattatacg cataaactca agcattaaac tttgtctagc
     2341 ttctctaaaa tcttttccac ctatttcttt gatataaaaa taaagctcta tattaatact
     2401 actatctgca aattcactta aagccacata acaagcattt ttatagcctt ctaaatcatt
     2461 aatagataca agattttgac gatattttgt tgtatgatcg ccatatttta atgcgctatc
     2521 ctcatcgtga gctactaaat cacttgtatg caaaaattct cttagatctt ttacacattg
     2581 ttctagtttt tcaggagtag catcataacc aacacccaaa tacattctaa catggcgacc
     2641 catgcgtctt ttgctccaat ttttgatatt agctcccata atagttgaat ttggtaaaaa
     2701 tacaagacaa ttatcaaaag ttctaatagt agtttttcta agtcctgttt caaccacggt
     2761 tccttctatg cctgaaacct ctacccaatc tccttgatta aagctattat caaaaagtaa
     2821 gagtatagaa gcaaagaaat ttgcaatgat atctttcgcc gctaaagcaa cagctaaacc
     2881 accaattccc aaagatgcaa taatagccga aatattaaaa ccaagttgag caagaatata
     2941 taataaggct ataataataa tgacaaaata taaaatttta ataattaaat ttacaacttc
     3001 tttttttcca cttttttgag caagtttaga aaccaatacc acgccataac catcaagcat
     3061 tcttaaaata agccatgcaa ttaaaactgc ataaactata tgaaaaaaat tacttaaatt
     3121 tacactcaaa ggtgcaggat aagttgctat agtaagacaa agagaaatag catagacaat
     3181 caacaagaag cctacgggtt ttttaatatt ctcaataaaa atgactttaa tatcatctac
     3241 atcattttta tttctataaa aaaactgaac aaggaaaaaa tatactatat ttgcaaaaaa
     3301 acgtcttaaa gatataaaaa atactaaaac cagagcagaa attactattt ttccgatatt
     3361 aacaaaactt accccaattg cctcatttat acgatctatc caaacttgaa gctcgagtaa
     3421 tgaaaaaata taattacttt caagcaaatc tgcatttgag cgtaaatact taagaatttc
     3481 agaataagaa tctacagcat tactgatata tctttctttt agggtaattt tttctaattc
     3541 ttctgaattt gtaattttgc ttttaaaact atctaaatta acattagaag aattttgtaa
     3601 attttccatt gccttatcaa cagtagcaat caaatcttca ctgcttgctg tatttttaaa
     3661 aagtttttcc aattcaaaca aagaagaata aaaactttcc acaatattaa aataaactag
     3721 atta
//
LOCUS       DARGED010000128         3705 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.129, whole genome shotgun sequence.
ACCESSION   DARGED010000128 DARGED010000000
VERSION     DARGED010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3705
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.129"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..184)
                     /locus_tag="SFZ84_001553"
     CDS             complement(<1..184)
                     /locus_tag="SFZ84_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203643.1"
                     /translation="MKKTNIIDFGLMGKQISALFYLLGHEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKI"
     gene            complement(204..485)
                     /locus_tag="SFZ84_001554"
     CDS             complement(204..485)
                     /locus_tag="SFZ84_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HEG8203644.1"
                     /translation="MCPFVTINANSNIGDFVLCNIYSSIAHGCKVGEGSILSPYATLN
                     GNSSIGKNCFLATRVSPLPCVNLEDNCIVSAGSIISKTTHPINLFFIKI"
     gene            complement(579..799)
                     /locus_tag="SFZ84_001555"
                     /pseudo
     CDS             complement(579..799)
                     /locus_tag="SFZ84_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799269.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(759..905)
                     /locus_tag="SFZ84_001556"
     CDS             complement(759..905)
                     /locus_tag="SFZ84_001556"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203645.1"
                     /translation="MQNLIQSIKKILIRKNMRVAGGGDLIFLLLLLGEVREKCHHHRS
                     GWLC"
     gene            complement(910..2064)
                     /gene="legC"
                     /locus_tag="SFZ84_001557"
     CDS             complement(910..2064)
                     /gene="legC"
                     /locus_tag="SFZ84_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEG8203646.1"
                     /translation="MFEKEISFIKSLFNKESIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKTRFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKLIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPIWKSLPSLKAFQNCQSNELINTKNLEKRLVNLPSSVRIANKKE"
     gene            complement(2057..3028)
                     /gene="legB"
                     /locus_tag="SFZ84_001558"
     CDS             complement(2057..3028)
                     /gene="legB"
                     /locus_tag="SFZ84_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG8203647.1"
                     /translation="MRNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            complement(3025..>3705)
                     /locus_tag="SFZ84_001559"
     CDS             complement(3025..>3705)
                     /locus_tag="SFZ84_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203648.1"
                     /translation="GKKEIKTHEVWIFFKQILEAMIIKYHITTYNCTEGGARIEGTIE
                     KPFLWACENLLHKNLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFNKILSND
                     FENIQSIYLSLNEKEEYLNLAIEKIDKFKNKLEDIKQMQDLYEILSPLLIQFELNLAR
                     IYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLD
                     KWMERVRR"
BASE COUNT         1140 a          615 c          523 g         1427 t
ORIGIN      
        1 ttatttttcc ggcgttaaaa ttagaaaaat ctatttttct ttgtagaagt tttatttgtt
       61 tttcaaattc gtatatattg agcttgcttt tattataaac acctatttca tggcctaaca
      121 aataaaataa agcacttatt tgcttaccca ttaaaccaaa gtctatgata ttagtttttt
      181 tcattgtttt tttcttgttt taattatatt tttatgaaaa ataagttgat tggatgtgta
      241 gttttgctaa taatactacc tgcgcttact atgcagttat cttctaagtt tacgcaaggc
      301 aacgggctaa ctctagtagc taaaaaacaa ttttttccta tgcttgaatt tccattaagt
      361 gtagcataag ggcttaaaat acttccttct cctaccttac aaccatgagc tatgcttgaa
      421 taaatattac aaagcacaaa atctcctata tttgaattag cattaatggt tacaaaagga
      481 cacactataa ccccttgtcc tattttagct tcttttgaaa caaaagattg aggatgtata
      541 aaagtgataa aattacatga tttttttgaa agttttacaa ggattttttt tcttaaattg
      601 atttgtccta cacctaaagc aaaagatgct ttttgaatca actttttatc gaagttatct
      661 tcattgccta gatattttaa gtcaaaaaaa tattttcttg tatatcaata tagcctataa
      721 tttcgtaatt tgcatctttt aaataagaat aaagctctct agcaaagcca cccgctccta
      781 tgatgatgac atttttcacg cacttctcct aaaagaagaa gtaaaaaaat caaatccccc
      841 ccccccgcta ctctcatatt ttttcttatt aaaatttttt taatgctttg aattaaattt
      901 tgcaacgcat cattcctttt tatttgctat tctaacgcta ctaggtaaat taaccaaacg
      961 tttttctaaa tttttagtgt ttataagctc attgctttga cagttttgaa aagcttttaa
     1021 actcggtaag cttttccata taggacggac gaaaatatta tttttcaagc attcttctaa
     1081 aaagatattt cttaaatttt catctttaaa aagcaaggta ttgagccaaa aattgctttt
     1141 ttcattgctt ttttcatcga taaatttaca tttatcgtga tttttaaaaa aatccttgta
     1201 aattttagca agttctcttt tgttttctaa aaaaagttct aaattttcaa gtcctgcaag
     1261 caagattgct gcgtttatat tgcaaagacg gtaattataa gctatcctat catgatcgta
     1321 ttcgtaagga tgggggattt tagctgtggt gctaaggtgt cttgcaagtt tagctaaatt
     1381 ttcatcatcg cttaatatcg ccccaccgca tccacctgtg atgattttat tgccattaaa
     1441 acttaaaatt ccacactttc caaaagtgcc taaggccttg ttttcatagg tgcttcctaa
     1501 ggcttctgcg gcatcttcaa ttaaaaggat gtggtatttt tcacaaagtt ctttgatggc
     1561 ttttatatga gcgcttaaac caaaggtgtg cataataaca caagctttga tgagtttgtg
     1621 tgtggttttg ttatagctaa gattatcttt ttgataagtt tgattttcta aaaaatgctc
     1681 taaagcctta ggacttaaac ttagagtgtt ttcatctata tctaaaaaaa cgggttttgc
     1741 acctgtataa gcgatagcat tggccgtagc gacaaagctt atgctttgag tgatgacttc
     1801 gcagttttca tcgataccat tagctagtaa agcgatatga agggctgctg tgcctgtatt
     1861 tgtagcgatg acaaagcgtg ttttggtttt ttcttttaaa gcttcttcaa aacgcgttac
     1921 aaattctccc acgcttgaaa caaaaccgct atcaatgcac tctaaaagat attttttctc
     1981 attgcctata aaacaaggct catgtagggc gatactttct ttattaaaaa gactttttat
     2041 aaaagaaatt tctttttcaa acattataaa gctcactttt ataattttct aaattttctt
     2101 taaaatactc tatgctttgt ctcaagcctt cttctagact tattttgctt tgccaatttg
     2161 tagctttttt aagcttgttt gcatcgcaac aaagtctaaa aacttcgcta tttttaggac
     2221 gcaatctttg ttcatcttgg atgattttta ctttagaatc taaaattttt tgtatgagat
     2281 caagtacttc ttgcatggag tattccactc ctgagcctat attataaact tctccaaaat
     2341 gttttaaatt taaaagagag ataaaaccct cgcaagtatc tagcacaaaa tttaaatccc
     2401 ttttagggct taaatctcct agtttgattt cctttgctcc acttaaaatt tgtgtgatga
     2461 tggtaggtat gatagccctt gcgctttgtc ttggtccata ggtgttaaaa gggcgtgcaa
     2521 tattgacatt taaattaaaa gaattataat aactcagcgc catcatatct gcagcgattt
     2581 tgcttgcaga ataagggctt tgaggttgca aagggtgttt ttcatcgata ggcacataaa
     2641 aggccgtgcc ataaacttca cttgttgagg tgtggataaa atgcgaaatt tcgttttttt
     2701 tagctgcttc gagcatattt aaagtgccat tgacattggt atccacatag ctttgtgggg
     2761 ctgtgtagga gtaggggata gcgattaaag cgccaagatg aaagatcgca tctatatttt
     2821 tggtgatttt ttcgcaaaaa aaactgtctc ttaaatctcc acttataact tccatgtctt
     2881 ttaaaaaagg acttttttct aaatgtcccc aaaaattaaa agaattatac tgacttaaag
     2941 ctctgacttt aaaacctttt ttgaccaaac tttcacaaag atgagaacct ataaaaccat
     3001 cagcacctgt aactaaaata tttctcacct tctcaccctt tccatccatt tatctaattt
     3061 tctttcttta agtttttctt ctaaaggaag tatattttta atcaaagcat tttcttgtgc
     3121 tttaatatgt ccataaacta attccataaa ttctaaatgt tcttttatcc aaagaatact
     3181 tttattaaaa gcatcttctt tggttttagg atttaagaca taaattctag caagattaag
     3241 ttcaaattgg attagcaaag gacttaaaat ttcatataaa tcttgcattt gttttatatc
     3301 ttcaagtttg tttttaaatt tatctatttt ttcaatagct aaatttaaat attcttcttt
     3361 ttcatttaaa ctcaaatata tactttgtat attttcaaaa tcattactta gaattttatt
     3421 aaaatctcta caatgtttaa tacttttaca aactttataa taagccttaa gtaaaaactc
     3481 attttgttta tttaaactta aaggttctaa tttttcaaaa ggtttattta aatttttatg
     3541 aagtaaattc tcacaagccc atagaaaagg tttttctatg gttccttcta tccttgctcc
     3601 accttcggtg cagttgtagg tggtgatgtg atacttaata atcattgctt ctaggatttg
     3661 tttaaaaaat atccaaactt catgagtttt aatttctttt ttccc
//
LOCUS       DARGED010000129         3699 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.130, whole genome shotgun sequence.
ACCESSION   DARGED010000129 DARGED010000000
VERSION     DARGED010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.130"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..373
                     /locus_tag="SFZ84_001560"
     CDS             <1..373
                     /locus_tag="SFZ84_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG8203649.1"
                     /translation="ATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHL
                     EGCECRKPKAGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLVLVNEEKKEG
                     DFFRQFKNLKEILSFFKEKDI"
     gene            374..1327
                     /gene="rfaD"
                     /locus_tag="SFZ84_001561"
     CDS             374..1327
                     /gene="rfaD"
                     /locus_tag="SFZ84_001561"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG8203650.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTIGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            1320..2705
                     /gene="rfaE1"
                     /locus_tag="SFZ84_001562"
     CDS             1320..2705
                     /gene="rfaE1"
                     /locus_tag="SFZ84_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG8203651.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGIVGDDKSGKFLQENLKGGFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDTSEILLENELITLFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFNEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANGIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKSKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDILIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            2702..3262
                     /gene="gmhA"
                     /locus_tag="SFZ84_001563"
     CDS             2702..3262
                     /gene="gmhA"
                     /locus_tag="SFZ84_001563"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8203652.1"
                     /translation="MINLVKKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDISALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(3243..>3699)
                     /locus_tag="SFZ84_001564"
     CDS             complement(3243..>3699)
                     /locus_tag="SFZ84_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEG8203653.1"
                     /translation="DASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIK
                     VKNLCNKTTIKTLCQNIAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQN
                     QNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL"
BASE COUNT         1295 a          429 c          756 g         1219 t
ORIGIN      
        1 agcgacaaat caatcaggca ttgcaagagg atattataag gaaagtgatt tttttaagct
       61 ttgtgattat atgcttaaag aatttactaa acaaggtata aaaattgata aaatttatca
      121 ttgtccgcat ttagaaggtt gtgaatgtcg caaacctaaa gcaggaatgc ttttaaaagc
      181 aaaagatgag tttaatttag atatgaaaaa ttctattttt atcggagata atctaagcga
      241 tatgcaagca gggttaaatg ctaatattgg cactttggtt ttagtaaatg aagaaaaaaa
      301 agaaggcgat ttttttagac aatttaaaaa tttaaaagaa attttgagtt tttttaaaga
      361 aaaggacatt taaatgagag tagcaatcac aggtggtgca ggatttatag gttcgcaact
      421 ggctttaaat ttgcaagaaa aacatgaaat tttaatcatt gataaaatgc gtagcagtgc
      481 gacttttgaa aatggaaatt tacaaagttt tggacatttt aaaaatttac ttgaatttga
      541 tggagaactt tttgcaggcg atattaacga tgaaaaagtt ttaaaaaaga ttgaagattt
      601 taagccagag attatttttc atcaagcagc aatttcagac actacggttt ttgatcaaac
      661 taaggtttta caaaccaatt taaatacttt taaagatttt atagaactta gcatagatct
      721 taatgcaaag cttatttatg caagttcagc ttcggtttat ggtgatgcaa aaagtccaca
      781 aactataggt aaagatgaag aaccaaaaaa tccttatgct ttttcaaaat tgatgatgga
      841 taagttagcg aaaaaatatt acgataaagc tcatttggta ggacttagat attttaatgt
      901 ttatggaaaa ggcgaatttt ataaaaacaa aaccgcttct atggttttgc aatttggcca
      961 tcaaatttta gcaggaaaaa atccacgatt gtttgaagga agtgatcaaa tttatagaga
     1021 ttttacttat attaaagatg ttattagtgc taatttaatc gcccttgatt caaaatgtgg
     1081 ggtttataat gtaggcagtg gtaaagcaag aacctttcaa gatatagttg atattttgca
     1141 aaaagagtta aagactgatt tgccttgtga atatatccca aatccttatg taaaatctta
     1201 tcaattccat actgaagcaa aactagatca aacttgggat tatcagccaa aatttagtct
     1261 tgaagagggg attaaagatt atttagatga gataaaaaga ctttttgaaa aggaagtaaa
     1321 tgcttgagtt tttaagccag caaaaaccta aaattttaat tataggggat tttatggtgg
     1381 ataattacac ttggtgtgat tgttcgcgta tcagtcctga agcccctgtt ttggtagcta
     1441 aaactcttaa ggaagataaa agattaggcg gggctgcgaa tgtttatgca aatttaaaaa
     1501 gtttaggagc tgatgttttt gcacttggta ttgtgggtga tgataagagt gggaaatttt
     1561 tacaagaaaa tttaaaagga ggatttttga tccaaaaagg acgcaaaacc ccttttaaaa
     1621 atcgcattat ggcacacaat cagcaggttt taagactaga tgaagaagat acaagtgaga
     1681 ttttgcttga aaatgagctt attactttgt ttgatgaaaa gattaaagat tttaaagctg
     1741 tggttttaag cgattatgct aagggtattt taacgcctaa ggtttgtaag gctgtgataa
     1801 aaaaggctaa ggctttaaat atccctgttt tagttgatcc taaagggagt gattttagta
     1861 aatatagcgg tgcaaccttg ctcacgccta ataaaaaaga agctttagaa gctttgaaat
     1921 ttgaaaattt agagggtgaa aatttagaaa aagggattaa aaaattaaaa gaagattttt
     1981 ctttgcgtta ttctattatc actctttcag aagcggggat tgcgcttttt aatgagggtt
     2041 taaaaatcgc acctgctaaa gccttagaag tttatgatgt aacaggagcg ggcgatagtg
     2101 tgattgccgt tttggctttt tgtttggcaa atgggattga aatttttaaa gcttgcgaac
     2161 ttgccaatga agctgcagcc gttgtggtaa gtaaaatagg tagtgtgagt gtgagttttg
     2221 atgagattag aagttttaaa agtatgagtt ttgagaaaaa gatcaaaagc aaagaagagc
     2281 ttttaacgct tttaaaacaa aatgataaaa agattgtttt tacaaatggt tgttttgata
     2341 tcgtgcattt tggacatata aaatatcttg agaaagctaa aagattgggc gatattttga
     2401 ttgtaggttt gaactcagat gcgagtgtga aaagactcaa aggtgagagt cgtcctgtaa
     2461 attcagagtt tcaaagagct tgtatgttgg cagcttttta ttttgtagat tttgtagtga
     2521 tttttgatga agacacacct ttagaactta taagcttttt aaagcctgat attttggtta
     2581 aaggagctga ttataaagat aagcttgttg taggttcaaa tttgatttca agagttgaat
     2641 taatcgattt tgaagaagga tttagtacga gtaagattat agaaaagatt aaggataaaa
     2701 aatgataaat ttagtaaaaa aagaatggca agaacatcaa aaaatcgttc aagaaagtga
     2761 aattttaaaa ggacaaatcg ctaaaatagg cgagctttta tgtgaatgtc ttaaaaaagg
     2821 tggtaaaatt ttaatttgcg gaaatggtgg aagtgcagct gatgcacagc attttgcagc
     2881 tgaacttagt gggcgttata aaaaagaacg caaggcttta gcaggtatag cacttacaac
     2941 cgatatttca gcgcttagtg ctataggaaa tgactatggt tttgagtttg ttttttcaag
     3001 acaagtagag gctttaggaa atgaaaatga tgttttaatc ggcatttcaa ccagtggaaa
     3061 aagtcccaat gttttagaag cttttaaaaa agcaaaagaa cttaatatgc tttgtttagg
     3121 gcttagtgga aagggcggtg gaatgatgaa taagctttgt gatcataatc ttgttgtgcc
     3181 aagcgatgat acggctagaa ttcaagaaat gcacatttta atcatacaca cgctttgtca
     3241 gattatagat gagggttttt aagtaaattt ctagcttctt ctataaccct ttgaggcttt
     3301 aaatctttca tgcatttgtg gtgttttaaa gggcagattt tttgcataca aggcatacaa
     3361 gctagatcta agtgtactaa ttttgcgttt tgattttgcc aaggtgaagt ttgagtaaat
     3421 ttcgtagggc caaaaatagc cacggttttt accttataaa ccgcacttag gtgcatagga
     3481 ccactgtcat ttgttatgaa aagatcacaa aaagcaatat tttgacaaag ggttttgatg
     3541 gtggttttat tgcaaagatt ttttactttt atgttttgtt cttttaaaat ttgataaatt
     3601 tcattacaaa gttcttgttc gacttttcct gcaccaaaga ttaaaatctc atgactttgg
     3661 ctgaaattta aagctacttt agcaaaataa ctcgcatcc
//
LOCUS       DARGED010000130         3647 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.131, whole genome shotgun sequence.
ACCESSION   DARGED010000130 DARGED010000000
VERSION     DARGED010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.131"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..554)
                     /locus_tag="SFZ84_001565"
     CDS             complement(<1..554)
                     /locus_tag="SFZ84_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG8203654.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFKNNQAFKSNLSDPKYSPLTPNLFPKIGIVEKISFYPE
                     LLDFLTKNQLKFRSLGATALSLAYA"
     gene            complement(554..2773)
                     /gene="bamA"
                     /locus_tag="SFZ84_001566"
     CDS             complement(554..2773)
                     /gene="bamA"
                     /locus_tag="SFZ84_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG8203655.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGNIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            2850..>3647
                     /locus_tag="SFZ84_001567"
     CDS             2850..>3647
                     /locus_tag="SFZ84_001567"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG8203656.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMK"
BASE COUNT         1192 a          570 c          552 g         1333 t
ORIGIN      
        1 gcataagcaa gacttaaggc tgttgcaccc aaagagcgaa attttaattg attttttgtt
       61 aaaaaatcga gaagttctgg ataaaatgaa attttttcaa ctatacctat tttaggaaat
      121 agattaggtg ttaagggtga gtattttgga tcggaaagat tagatttaaa agcttgattg
      181 ttcttaaaag caaaaatttc ttgactgaca agattgcaaa caaaagcgct ttttgcctga
      241 tctttttcca taagagctat agaagttcca taaaatggta ttttagaaac aaaatttgaa
      301 cttccatcca aaggatcaag aatcatttgt tttgggctag cttttccgat caatccgctt
      361 tcttcagaaa aaatttgtcc aaaacaacta agatatttta tgaaaatttg ttcacatttt
      421 aagtcaagct catagccttg atttttatca tagcctaatt tagagcaaag tttaagatca
      481 ttttgtggga tattgtttag atacttgcgt atttgcaaat ttgcattcaa gcaagcatct
      541 aaaaattctt tcattaaaag cgtgttccaa gattaaattc aaaactatta gtatcatcac
      601 cttttttatc attaagaggt ttggcaaata caagttgtaa aggtccaata ggtgtaatcc
      661 attcaatgcc tatacctgta ctcattcttt ttatttcatc taaattttta cgccctatca
      721 taccataatc aaaaaacacg ctaccacgaa gtttgattct atcaatcaaa ggaaaactaa
      781 gttctacgga attggcaaaa gctatggttc cgcctatttc atctccccat tgatttttag
      841 gacttactgt tctgctttca aaaccgcgta tcgatctaat accacctaaa taaattcttt
      901 ggttaattgg taaataacct tcatcccata ctttataaaa actcgcttta tagcgataaa
      961 taagatcata tcctatatag tcttgcaaac cttgataaaa gttaaattta gagcttgatg
     1021 aaataaattc ttgatctccg ccaagtccag cgtattctaa actagttgaa gcaataatac
     1081 ctgatcgtgg cagataataa tcatctgtat tgttaaaggt gattgctgga gttatagagc
     1141 ttttaatact tttgccaagt tcatatcctg ttcttaaaag agttggactt aagtggtata
     1201 tatcgctttg ttcaagatta taagttaagc ttacattata gtatcttgca aattggcgtc
     1261 caactgttat atcaaagccg taattttttt ctgaataatt atcccattca tagtcatttg
     1321 aataaagtgt tccacccaga ctatattgac tatcaagaac gcgtggattt atgagactaa
     1381 tccttcctga taaggtatca tcgcttttat ctacgcttac agagcttttt attcctgaac
     1441 caaagatatt tgtatctgat aaagaagcgt taagcaaaat accatcgctt gatccatagc
     1501 caatgcctcc agaaatagct cctgtagaag cttctttaac atcaacaatc aaatcaatat
     1561 gtgtatcatc aactttttct tctttgatat ttacatcgtc aaaataagaa gttcttttta
     1621 aagcattttt tgactcgctt aagtctgttc tattatataa attaccttct gttatatata
     1681 attctcggcg tatgacgcga tctacggtgc gtgaatttcc tgaaataata acatttctta
     1741 tataaacttt atcgtgaggg attactttaa atacaacggt ggcttcttga gtttgatcat
     1801 ttttttgaat atcaggatag acttctacaa acgcataacc caaatcagca ctttgtgttt
     1861 ctatggtttt aacatctttt ctaatgtctt cgatattgat agttttgcca gcgcttgatc
     1921 ttaaatcttt tacggtttgt gcattttgct tatcatcaaa taaaggattt tctatgctta
     1981 tacttttaat tttataaggc tttccttctt tgataaaata agtcaaattt gcttgataag
     2041 tatctgtgta ggttttaaga taaggggagg atacttgaac atctaaatat ccttttttca
     2101 tatattcatc agcaattctt gaactatcgt tactaagttc aaaaactttt aattttccat
     2161 cattgcgtcc ccacatccat cccataaatt ctttttcttt gttaacaaca gcaggttcta
     2221 tatcagaata tgaaaatttc tttgctccac ttaaatgaac attatcaata atgatatttt
     2281 caccacgatt tactataaat tcaagctcta gtccatcagt attttctaaa gtcttttttt
     2341 tgtattctac aatagtatca aaataacttt ttgcttcata ataagcttta atgcgttcaa
     2401 tagcttcttt tatatttcct tcatcaagta gtgtacctct tttaatccct aaaatacttt
     2461 caacttgttt tctatcattt gaagctatac ctgtgatagt aacctttgct atagttggtt
     2521 tttcagtaac tataatttcc aaaattccat tgttgttttc tactgcaata ttttcgaaat
     2581 aattttgttt ataaagatta agaatagcag tgttgatttt tgcaggattt atttcctcgc
     2641 ctattttaag ccccgcgata tttatagcgc ttgtgttcga taaatgattt aatccgataa
     2701 atttaatatc tttaatggtt gctgcattgg ccatagcaac taaagcacaa atactaataa
     2761 gatgtttttt cattgatttt ttacctaaag ctttattaaa agctgtataa tagcaaaaaa
     2821 aatttaacaa aaaaactaag gtagaaagta tgaaaatagc aattataggg cttgggctta
     2881 tgggtggatc tttagggctt tgtttgaaag aaaataagct tatttcttgt gtttatggta
     2941 tggatttaag caaagaaaat gaaaaagatg ccctgcaatt aggtcttatt catgagctta
     3001 tagaatttaa agatttagct ttatgtgata tgatttttgt cgcaactcct gttgatgcta
     3061 ttatagaaat tttgcaaaag ttagttgatt tgccttctaa tgtaacaatt atagagcttg
     3121 gaagtacaaa aagaaaaatt atagaaagtt tgcctaagaa tttaatcaaa caaactcttt
     3181 ttgctcatcc tatgacagga actgaaaatt caggtccaaa agcagctttt aaagagcttt
     3241 ataaagatgc agtttgtgtt ctttgtgata gtgaaatagc tgatgattta catcaaaaaa
     3301 gagcggtaga aattttttct catttaggga tgaaaattgt ttttatggat agtaaagccc
     3361 atgatcatca tgctgctatt atttctcatt tgcctcatgt tataagtttt tctttggcaa
     3421 attttgtaat gaaggaagaa gataaaagaa atattgttca tttagccgga ggatctttta
     3481 aaggtatgag cagaattgcc aaatcatcgc cacaaatgtg ggaaagtatt tttttacaaa
     3541 ataaagataa cttattaagt tctattgatt tttttcaaca agaattagag agatgtaaac
     3601 aaatgataca attagacaaa aacgatgaat taagagaatg gatgaaa
//
LOCUS       DARGED010000131         3575 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.132, whole genome shotgun sequence.
ACCESSION   DARGED010000131 DARGED010000000
VERSION     DARGED010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.132"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1567)
                     /gene="mnmG"
                     /locus_tag="SFZ84_001568"
     CDS             complement(<1..1567)
                     /gene="mnmG"
                     /locus_tag="SFZ84_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG8203657.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSKNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFEDAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDP"
     gene            complement(1653..2150)
                     /gene="cetB"
                     /locus_tag="SFZ84_001569"
     CDS             complement(1653..2150)
                     /gene="cetB"
                     /locus_tag="SFZ84_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG8203658.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(2168..3547)
                     /gene="cetA"
                     /locus_tag="SFZ84_001570"
     CDS             complement(2168..3547)
                     /gene="cetA"
                     /locus_tag="SFZ84_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG8203659.1"
                     /translation="MVKNGLLLTIFLSIIGILGAIFFHIYVGVIIFILIAVLMIYLFR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISNSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
BASE COUNT         1144 a          663 c          450 g         1318 t
ORIGIN      
        1 taggatcaag tttttttaat ttttctatat caaaacttgc tcttgcaaca attttttgaa
       61 gattgactat agaagaaatt ttatcttctc ctaaactctc taaaaaagca ttattttggt
      121 tattaggcgt aaattcttta gaaagtaaaa attcaagtcc tttttgaaga ttgtttgcaa
      181 tattttgtat ataagtaaaa tcttgctcgc ttaaaagccc caaatcatag ccatattttc
      241 caagtctaag tatagcattt tcttccctta aaagcagtct aaattctgct cttgaagtaa
      301 acattctata aggttctttt gtacctttta ctaccaaatc atcgattaaa actcctatat
      361 aagcttcatc acgccttaaa atcaaaggct ctttcatatc tatacttaaa cttgcattga
      421 ttcctgccat aaagccttgt gctgcagcct cttcataacc tgtagttcca ttaatctgtc
      481 ctgcacaata aagattttta atctttttaa gttctaaagt atgcttaagt tcagttggct
      541 ctatataatc atattctata gcataaccaa aacgggttat tttagcatct tcaaaaccct
      601 ttacagaacg cagcatttga atttgtacct cataaggcaa agaagtagaa aaaccgttga
      661 tataatactc tgtcgcatcg atagtttgag gttctataaa aagatgatga ctttctttgt
      721 cgctaaaacg gttgatttta tcttctatag aaggacaata ccttggccct acaccttcaa
      781 tctgtcctgt aaaaagtgga gcacgataaa aattattctt aataatctca tgtgtagttg
      841 tattagtgcg tgcgatataa caaggaagtt gagtaggatt gaaatttttt gaacgaaaac
      901 taaaagcttt aggatttaca tcaccatctt gaatttcaag cacgctaaaa tcaatgcttt
      961 ttgcatccac tcttgggcaa gttcctgttt ttaaacgccc cattttcaaa cccaaagttt
     1021 gtagataatt tcctaaattt accgaagcaa gctcccctac ccttcctgct tgaagtttat
     1081 tttcacctac atgaataagt ccatttaaaa aagttcctgt tgttaggatc acttttttgg
     1141 caaaatatgt attttctaaa tttgttttta cgcctttaac ttcatcattt tctacgatta
     1201 aaacactcgc ttgttcttga gagatttcta aatttggaag ttttaaaagt ttattacgtg
     1261 caatgatacg gtatttatcc atatcaattt gtgccctact tccttgaacg gctacaccct
     1321 tactctcatt taaaatgcga aattgtatcc ctgcttcatc ggtgatttcg cccataagac
     1381 cacccatggc atcaagttct tttaccaaat gccctttagc aagccctcct atagccggat
     1441 tacaacttgc cgctcctatt tgctcaatca atgtagttaa aagtaaagtt tttttaccca
     1501 ttctagcagc agcagcactt gcttcaacac ctgcatgtcc accacctata acaatgacat
     1561 caaacatatt ttgccttgaa aaatgtgaat tttaaagaaa gattatataa tatttagact
     1621 taaaacaaac tcgttttaag tctaacaaaa atttatttag cttcttgaag agagaagatt
     1681 agctcattat aagttttatc tgcatcttta cagaaatttt taagcatctc aacaccctta
     1741 tttaaacctt gttgctgttc tactcttaaa agatcactat aaaggctttc tattgtagaa
     1801 atagcgcttt tatttggcat acgacgaacg gaataatagc ctatgatatt attattaatg
     1861 tctattgatg gagttacatt tgcaaaaacc cagtagtaat tgttatcttt ggttttgttt
     1921 tttacgtaag caaaaatttc tttgccttct ttcatataat cccataaata tttaaaaaca
     1981 gtttttggca tttcttcatg tcttactatg ttatgaggtt tatttaaaac ttcacccata
     2041 gtataacctg catactttaa aaaatcatca tttgcataaa ctattttacc ttttaaatcc
     2101 gttttagaag taattaaact atcttcttgt aaaaaaattt ctcttgacat tttcccaccc
     2161 tcttaattta tatttttaat tttgctaaga tttcagcact tctttgctct agtgatttaa
     2221 tatcatttac aatcgcatca taagcttttt gatcgatata atcttgactt gattcttcta
     2281 ttgctttttt agcgttatct tttataaatt ctttagctaa atttaactca gtttcagaac
     2341 taagctcatt aataacacct tgagctctct catcttgaca aagattagaa attggatcta
     2401 cactttcaag attgaaattt tgagccccat ttaaatttaa atatatattt gatttataaa
     2461 gaatatgatc gattttaacc acagacaaaa tcaatctctt tgcaaaggat ccaaaattaa
     2521 caccaagagc actactattt tcttctagac gtttaaaagc ttgagaaaat ttattaattc
     2581 tttcttcaga ttcactaaca atgttaaaaa cttgctcact gccactttgg atatttacaa
     2641 aatcttgttg catagtctga attgcaatag aaatttcact tgtagatctt tgagttcttt
     2701 ctgctaactt tcttacttca tcagccacaa ccgcaaagcc tctaccatgt tctcctgcac
     2761 gcgcagcttc aatagcggca tttaaagcta gaagattggt ttgatcagct atatcgcgta
     2821 ttacttcaac cactgaagtg atattttgag aattagccac aaaagtttgc actgtttcct
     2881 tgcttgaatt tacaacatcc attaaagaac ccatagcact ttgtaaagaa tccacttctg
     2941 agccattttc tgtagctgta tgagaaatgg catccactgt atcatataca tttttcatca
     3001 tactaatatc ttgatttaat gagttagaaa tttgagacat atctttattt tgatttccaa
     3061 ggcttaaatc cattaaagtt cttgataaag catttttaaa agtagatctt gctgtcactt
     3121 ctatgtttgc taaagcttta tttataaatt cgatattatg agcaaaaatt ccttttaaac
     3181 cttcaggcaa agccttacga taaaattcac ctttttgaga acatgaaata gacgtattaa
     3241 tttcccttaa gtaagcttct agcccatcaa tagtattgtt aagattatct gctatttcgg
     3301 ctaatttttt gctttttgtt tttacataga taattctatt gtcaaaattt ccttctttta
     3361 actctctaca aagaaccaaa agtttatcta tcattatttg ctcatctttg tgttgtctaa
     3421 acaaataaat cattaaaaca gcgattaaaa taaaaattat cactccaaca taaatatgaa
     3481 aaaaaatagc acctaaaata ccaataatgc ttagaaaaat agttaataat aatccatttt
     3541 tcaccataaa tttacccctt ttattgaaaa ttttt
//
LOCUS       DARGED010000132         3548 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.133, whole genome shotgun sequence.
ACCESSION   DARGED010000132 DARGED010000000
VERSION     DARGED010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.133"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..987)
                     /locus_tag="SFZ84_001571"
     CDS             complement(<1..987)
                     /locus_tag="SFZ84_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEG8203660.1"
                     /translation="MEELINNLRGYAELAQASYFNFMYINNDEREMDSYKIGQNRFPK
                     DKDNIENLEYTKTLSKKYKDYFIYDDSIALYPTLNGEFGEIQAKNFAKKYEIKFHQPN
                     TASGFSATLFYDKEKDKFVVGFRGTEGLWSMDTLADIGLTFGKGDFQLNALKQFLLDI
                     APILNKVDSNNIIFIGHSLGGYLAVIAMQFCDTIDRSLNTQFNAIKFMASQVYTFNSP
                     AIDEIDNMLMRALAALLDKNIMEQVLNPQKVYCVYDSGGINIIASAQYGSHNRLPIYT
                     GKDSHSIIPLTQTLYFYSYLLELDANHNKVKDKSFSECIEYLNHFIKNIQIYT"
     gene            complement(1244..1636)
                     /locus_tag="SFZ84_001572"
     CDS             complement(1244..1636)
                     /locus_tag="SFZ84_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203661.1"
                     /translation="MNNKEQIKKLRDNAELAWASYGYFDFIDKQYSFDEKDKDKFKTL
                     YAKINDLKKSDEKVQNAKATYTDILNMEYNSLFDGEFSPLQAKQFFERYDLLIHQTNT
                     ESSFSAALFYDTHKDGFVVWFRETECGF"
     gene            complement(1633..2169)
                     /locus_tag="SFZ84_001573"
     CDS             complement(1633..2169)
                     /locus_tag="SFZ84_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203662.1"
                     /translation="MIRLKKILKISSFILLPLIIIWSMIFGWGWFVPYSLQPSYHEFK
                     EMCKLEPKIYQSNGGKIDKEYYNKLLAYFNTNFEEVLQGNKGMANVSNSQYIQRENIE
                     LYSFNEDRDKGRLSFSLGLDIEKNKTTNEILPLKKVFFYVEWYNRRKYLTTKSVASYE
                     LEWRENYENFAYFKKEIK"
     gene            complement(2170..3162)
                     /locus_tag="SFZ84_001574"
                     /pseudo
     CDS             complement(2170..3162)
                     /locus_tag="SFZ84_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935932.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
     gene            complement(3155..3548)
                     /locus_tag="SFZ84_001575"
                     /pseudo
     CDS             complement(3155..3548)
                     /locus_tag="SFZ84_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004083801.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1155 a          593 c          453 g         1347 t
ORIGIN      
        1 tgtatatatt tgaatatttt ttataaaatg attaagatac tctatacact cactaaaact
       61 tttatctttg actttgttat ggttagcatc taattctaaa agataggagt agaagtaaag
      121 agtttgagtt agggggatta tggagtgaga atctttaccc gtatagatag gcagtctatt
      181 gtgtgagcca tattgagcag aagcgatgat atttatacca ccgctgtcat agacacaata
      241 tactttttga ggatttaaga cttgctccat aatattttta tctaataatg ctgccaaagc
      301 ccgcattagc atattatcaa tctcatcaat agcaggagaa ttaaaagtat agacttgcga
      361 tgccataaat ttgattgcat taaattgtgt atttaagctc ctatcaatag tatcgcaaaa
      421 ttgcattgct ataactgcta aatatccgcc taaagaatgc cctataaaaa taatattatt
      481 tgaatctact ttgtttaaaa taggtgctat gtctaataaa aattgcttta aagcattaag
      541 ttgaaaatcg cccttaccaa aggtaagccc tatatccgcc aaagtatcca tactccaaag
      601 tccctctgtc cccctaaacc ctactacaaa cttatctttt tctttatcat aaaacaaagt
      661 agcactaaag ccagaagccg tatttggttg gtggaattta atctcatatt ttttagcaaa
      721 gtttttagct tgaatctccc caaattctcc attaagtgtc ggatatagtg caatggaatc
      781 atcataaata aaataatctt tatatttttt agataaggtc tttgtatatt ctaaattttc
      841 tatattgtct ttatctttag ggaatctatt ttgccctatt ttataactat ccatttctcg
      901 ctcatcgtta ttgatataca taaagttaaa ataacttgct tgggccaact cggcatagcc
      961 tcttagattg ttgattaatt cttccattta gtctcctaaa gttaatttag caccaaaaac
     1021 agagcaaatg ccaaagggta atataaaaac aatattaaaa aattccttaa atatttttta
     1081 attcttgtta ttccaaaaag ccatagattg gctatcatta gtggaaagac tatccaacca
     1141 agcattataa aaaactcctc aaccctattt ggattatgtc caacaatagg agatataaac
     1201 caacctacaa cacataatat aatccaacaa atataaagta tttttagaat ccgcattctg
     1261 tttccctaaa ccacaccacg aaaccatctt tgtgtgtatc atagaacaaa gcagcagaaa
     1321 agcttgactc tgtatttgtt tgatggatta ataaatcata tctttcaaag aattgtttgg
     1381 cttggagtgg ggagaattcg ccatcaaata aggaattata ttccatattg agaatgtcgg
     1441 tgtaggtagc tttggcattt tgtacttttt catcgctttt ctttaaatca tttatttttg
     1501 catataaagt tttaaactta tctttatcct tttcatcaaa gctatattgc ttgtctataa
     1561 agtcaaaata accataacta gcccaagcta gttctgcatt gtctctaagc tttttaatct
     1621 gttctttatt gttcatttta tttccttttt aaaataagca aaattttcat aattttcacg
     1681 ccattcaagc tcataagaag caacactctt tgttgtaaga tacttccttc tattatacca
     1741 ttctacatag aaaaaaactt tttttaatgg taaaatttca ttagtagttt tatttttttc
     1801 tatgtccaat cctagactaa acgataaacg ccctttgtct ctatcttcat taaaactata
     1861 taattctata ttttctcttt ggatatattg actatttgaa acattggcca ttcctttatt
     1921 tccctgtaaa acttcttcaa aatttgtgtt aaaataagct aataatttat tatagtattc
     1981 cttgtctatc ttaccaccat tagactgata tattttgggt tctagcttac acatctcttt
     2041 aaattcgtga taactcggtt gtaggctata aggcacaaac cacccccaac caaatatcat
     2101 actccatata attatcaaag gaagtagaat aaaacttgat atttttagaa tctttttaag
     2161 tcttatcatt tatacactct ctttagattc tatattatta taagcaagtt gtctataata
     2221 tggtgcaata tctgctaaga taggaatggc attaatatca agtgtcatca ttgttgtatg
     2281 agtagaaaga ctcattgtta tcccatagta ttgactttgt ttttcttgga ttatcttgtg
     2341 taatatctct cgtatcttac tttctaagaa aatattatct ttgcctaaat ctcttgctct
     2401 atttgctata ttttctattt cttcttttat aaatctttct tgttgttctt tactgtgaaa
     2461 tataaagagt tttactatat aatcataagg aggtgctatc tttctagctc caggtgcatt
     2521 ataagtatat aaagctttga tattgtttct attcctatca tcacagatac ttaaagcaaa
     2581 gagttgcgct agacagcctc caagagagtg tcctgtaata gtaagagaat ctttttcttt
     2641 gatttgtgga taatctttaa tacaagtttc ataaaagttt agcatatcat catattgggc
     2701 tttaggtata gagcctatgg ctaaagaagc atcagctaca aacaaatctt tgaaagaact
     2761 catttctgtt cctctaatgg ctaaaatata attgatatag ccatattcac ttgtatagct
     2821 tttttcttta gttttactat caatttgttt tcttttttct ccaaataaag tagcactaaa
     2881 gccagatccc gtattagagc aatgttttaa caaatcatag caagaaaaga attgtttagc
     2941 ttggagtgag gagaagtcgc catcgagctt gccgatttta aatcctcttt catcaataat
     3001 tttagagttt ttataggtaa tatctaaaac attttcaaag gtaacaattt tatcttcatc
     3061 ttttatatca aatttattat caacataatg aaaatatcca taacttgcct gtgcaagttc
     3121 tgccatgtcc cttagtttat tgatttattg tttattatcc atataattct cctaataagc
     3181 ttctgcaatc tatttcaccg tcaagcttta atctaaaatc catattaccc tcattaccat
     3241 aaatatttgg tgcatagttt ttccatattg gtctaaaata tattttatta atatttttaa
     3301 aagttaatgt tttgttattt ggattcttat aataaatata tatacctaaa tctattctat
     3361 taccataacc tatttttgca taaccatttt ttcctatact accatctaaa ctcttatcaa
     3421 aataagctaa gattctatta tatttttcct cactttttgg ataattattt aatttacata
     3481 accttctaaa ttcccaatag ctaggatata aaaaggggta taaaataata taattaaaat
     3541 tattggtg
//
LOCUS       DARGED010000133         3519 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.134, whole genome shotgun sequence.
ACCESSION   DARGED010000133 DARGED010000000
VERSION     DARGED010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.134"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(32..598)
                     /locus_tag="SFZ84_001576"
     CDS             complement(32..598)
                     /locus_tag="SFZ84_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG8203663.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDTFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEVFGGRVSKMQNS
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISFMPKKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(595..2379)
                     /locus_tag="SFZ84_001577"
     CDS             complement(595..2379)
                     /locus_tag="SFZ84_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEG8203664.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSIFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIYKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFYLFETMYFKNSQILFLKEHLLRLINSALKFNF
                     NTHKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGIL
                     KLILYRDGRYEFQQSALKQNSNDILLLSDDKVNSKSDNLYHKSSLRSFYNQHSYKWQQ
                     NLCYDIAFFNEKDELCEGSRTNLILEKNAQFYTPQIQSGMLNGVYRNFLVNLGLIKEK
                     ALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            complement(2369..3433)
                     /locus_tag="SFZ84_001578"
     CDS             complement(2369..3433)
                     /locus_tag="SFZ84_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8203665.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT         1178 a          465 c          459 g         1417 t
ORIGIN      
        1 ttttatattt atattttaaa cgcaaaaaaa actaaagttt cataaagttt ttaagtattt
       61 ttttaccttt ttgagttaaa accgcttcag ggtgaaattg taatccataa atgggatatt
      121 ttttatgttt aattgccata atgatatttt ctgaattatg agctaaaatt ttgcattttt
      181 taggcataaa actgatatgt aaagaatgat ataaacaaat ttcaatttct tttttaatac
      241 ccttaaaaat aggatctttt ttaaaataaa gtttagaaat tttaccatgc atagaatttt
      301 gcattttaga aaccctaccg ccaaaaactt cagctataca ctgatgccct aaacatatac
      361 ctaaaatttt tttatttttt ttaaaatatt tgattgcttt taagcttaat ttagattcct
      421 taggagaatg aggcccagga gagatgataa gatgagtaaa atcaaatttt tctaattctt
      481 tggctttttt aaaggtatca ttttttatca ctttacattc aaaaccaagt tctttaagat
      541 aatagatgat ggtataacta aaagaatcat aattatctat aaataaaatt ttcttcattg
      601 taattttacc ttttttaaac cacgcacgga attaatgcaa taaatatttt ctgcttcaaa
      661 taaatcttgt ttaaataatg ctttttcttt tatcaaacca agattgacta agaaatttct
      721 atatacgcca tttaacatac cactttgaat ttgtggagta taaaattgag cgtttttttc
      781 taagatgaga ttggttcttg agccttcgca aagttcatct ttttcgttaa aaaaagctat
      841 gtcataacac aagttttgct gccatttgta tgagtgttga ttataaaaac tacgtaaaga
      901 gcttttgtga tagagattgt cactttttga gttaacttta tcatcactta aaagcaaaat
      961 atcgtttgaa ttttgtttta aggcactttg ttgaaattcg tatcttccgt ctctgtataa
     1021 aataagcttt aaaattcctt ctttatgtgg atttttaaag ggtaggggaa aattataaaa
     1081 taaagagtgt tttttgtgga aaattttttc atcgagttta aaaagtgtaa aattttgata
     1141 ttctttataa gaactttttt gatttaaaac attataaaaa tctttaaaga gcttgtgagt
     1201 attaaaatta aatttaagag ctgaatttat aagccttaat aaatgttctt ttaaaaataa
     1261 aatttgagaa tttttaaaat acatggtttc aaaaagataa aaatcacaag gatttaagat
     1321 tgcactttta agttttaatt cttcaaattc atctttgaat tttgagtccc aaactaagcc
     1381 gctacccgtg ctataagtat aaatttcatc ttgtttttct aaggtgcgta tggctacgct
     1441 aaatttattt ttatttttgt atattaaacc tatagttccg cagtaaatac cacgatctct
     1501 ttgttctaat tcttcaataa atttaatgct ttcaagcttt ggagcacctg taatagaacc
     1561 acaaggaaag agagctttaa aaatttgata taaagaaata ttttttttaa gttttccttg
     1621 tacgcttgaa gtcatttgat gtaaagtagg gtgactttga atttcaaaaa gtttggtttt
     1681 taagcttttt tttgtgatga tttttgaaag atcgttgcgt aaaagatcac aaatcataac
     1741 attttcactc agattttttg tatcattttg caagaaaatt ttattttctt catcttttat
     1801 aggatcttta tcacgcttaa ttgtgccttt cataggtttt gtaaatattt ttcttttttt
     1861 ggttttgaag aaaagttcag gagaaaagga taaaatttct cttgtttcat cttttataaa
     1921 agctttaaat tcagtatctt gtctagaaag caaaagttta aaaagttcaa aagaatccat
     1981 tttgctatga aatttaaaat tttgagtaag gttgatttga taaactcttc ctttagagat
     2041 tgcctcttta accttgatga aattttcttt gtaattatct tgatctaaaa aatttataaa
     2101 ttcaggaata aatttttctt catcgatatc ttctttttga aatttttttc tttttttaaa
     2161 agcaaatata gacaaataag cttttttgct tgtgaaattt ttatcttgaa aatatctata
     2221 tagctcataa tcagcaagca ttaaaatata aaaatcattt ttatattttt ctataaattt
     2281 aaagcacttt ttactttctt tgtggttaaa ggcttttaaa gtgtgtttta aatcatggta
     2341 aaaatattta ccaaaaacag catagttttc aagagtcact taattccttt gcaacctgtg
     2401 cggcaagttt taatttatca ttatcaaaat gagtgtaaat tcttgaggta tttaaacttg
     2461 catgccctaa agcttcttga actaaaacta aatctttttg ctttttataa agcagggtgg
     2521 caaaagtatg acgcaacata tgagcaccat ttttttgttt gcgaattcct gcacgaaata
     2581 aaagctgttc tactatgcga ctgacataag attgagtcag tggagtgcct tttttattga
     2641 caaaaagtag ggcgtcttta ctcatataat taatacttac atttttaagc aaatcgtaaa
     2701 taagttcttt ttttatcatt acaacacgat atttattgcc tttagctctt attcttatga
     2761 tataaagatc gttttcttcg ctaatatcac ccattttgat attgatagct tcacttaccc
     2821 gtatgcctgt aaaaatgatg attttaataa taagtttatt gcgtatggta ttgtttttaa
     2881 aatctgcatt ttcaatagca tcaagaaatt ttttaagctc ttcttcactc ataaattcag
     2941 gtaattttac ccctttagaa cctgctatac ctgcccagtt tttaagattg atatcgaaaa
     3001 tatgtgcttt ttcatcttct tcattttgct tgtctaaaaa atcaaaaaaa ttaatcacag
     3061 caatacggta attttttttg cttgcatctg ataaagcacc tgttatactt gctaaaactt
     3121 ctacaatgag ttcttcatca atctgtttta aagagtaaag cttataaaaa tttaaatatt
     3181 caaatacttt ttttaaagga ttaaaataag tattaactcc acttaaacca gcatttcttg
     3241 ctttttttgc tagagcgtca agttcatcaa tattttttac accttttgta agagcaaaat
     3301 taacttctgc taaagcttgt ggatttttta actctttgtt agatagtgag ttgagtttaa
     3361 attttacata ttttgctaac caaaataaga atgatttttc aaaattttct tcacaatcta
     3421 aagggtattt cataaaaact tttcctaaat ctaaaatttt agctttttaa ctagaaaagg
     3481 tattttagta ttaacttagt aaaaaaaagc ttttttagg
//
LOCUS       DARGED010000134         3342 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.135, whole genome shotgun sequence.
ACCESSION   DARGED010000134 DARGED010000000
VERSION     DARGED010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.135"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            157..840
                     /locus_tag="SFZ84_001579"
     CDS             157..840
                     /locus_tag="SFZ84_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8203666.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANTKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQAR
                     KMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKNALETIRIASKKFPQYEKTFHI
                     KIPLVYKLS"
     gene            complement(932..1765)
                     /locus_tag="SFZ84_001580"
     CDS             complement(932..1765)
                     /locus_tag="SFZ84_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEG8203667.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLISSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAKYDLAFKRLQRKQSKRI
                     LKIKKEKIKLSHNFKKTQLKLNKIYEKSSNIKKDSYHKITSKLIQEFDLLAVEDLQIK
                     NMSKRAKLKNIKAKSGLNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSV
                     CGNIKKNLMLKDRVYLCEKCGNTLHRDINAASNILKRGLKSFGLEISLEDYKLKAFRI
                     S"
     gene            complement(2195..2289)
                     /locus_tag="SFZ84_001581"
                     /pseudo
     CDS             complement(2195..2289)
                     /locus_tag="SFZ84_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1302 a          550 c          348 g         1142 t
ORIGIN      
        1 aattaaatat cttttagata caagcttgat tatttgattg ttatttttct ctgtgaaatt
       61 tgtttcaaaa tttatctttt taaacaattt accatagaat gtgtttaaga aataaagata
      121 tttaaatcaa aaaataaaat cataacggag taaaagatga aaacatttat aagcaatcat
      181 aaaaaccaat cttcttttat cactttattt gtttttacac ctttattttt tgtttttctt
      241 tattctaaag attttttaca catacaaccc aatgaaacta ttaaagaaaa taaatttaat
      301 atggcaatca aacattttgt acaaaattcc tccgatatga aaccgacaca acccacacaa
      361 actatacaag agccttcgaa tgtgcaaccc aaagaacctg tgcaagaaat aaaaaaaata
      421 aaaccgagaa aagaaaaacc tatcgctaaa cctaaaaaaa taatccctcc agcaaataca
      481 aaggcaataa gtcaacccaa aaaagataca aacatgcagc aacaaactcc acaagccagc
      541 tcttaccaaa gcgtatcttt aactagtaat agtgagcttt taaaagaaat aaaatcagca
      601 atcgatgaag ccctaatcta ccctagacaa gctagaaaaa tgcgtatgag tggggaggtt
      661 cttgtagaat ttacctggac aaaagaaaag aaattagaaa atttaaaaat acttaagcct
      721 tcaaaatatg attttctaaa taaaaatgct ttagaaacta tacgcatagc ttctaaaaaa
      781 tttccacaat atgaaaaaac ttttcatata aaaataccat tggtatataa attaagctaa
      841 atctttcaca atatactcta tttttaatac aaatcactcc agctttgcta acgcttagaa
      901 gtagaagctt cctagctaaa gctaactagt attagctaat tcgaaaggct ttgagtttat
      961 agtcctcaag gctaatttct aacccaaacg actttaatcc acgctttaag atattacttg
     1021 cagcattaat atctctatgt aaagtattgc cacatttttc acaaagatac actctatctt
     1081 tcaacataag attttttttg atatttccac atacactaca agttttgctt gtatattgtg
     1141 gattgacttt tataaagaat ttgccattat gctttgcttt atactctaga tattgagaga
     1201 attgatagaa tgaagtatta agaatagatt tatttaaacc acttttagct tttatattct
     1261 ttaatttagc tcttttagac atattcttaa tttgcaaatc ttcaactgct agcaagtcaa
     1321 attcttgtat gagttttgaa gttatcttgt gataactatc ctttttgata tttgaacttt
     1381 tttcatagat tttatttaat tttaattgtg tttttttgaa attatggctt aactttattt
     1441 tctccttttt tatttttaat attctcttgc tttgttttct ttgtaatctt ttaaatgcta
     1501 aatcatattt agctctacta agtagctttg agttagtagc tattaactct ccactgctta
     1561 aggtaatctc attgatattt aaatcaatgt caactgcttt tttaatatca aaatctttgc
     1621 tagatattaa agaaacattt gattcatcat aaatgatact aaaagctaaa tagtatttat
     1681 tgtgattttt gataatagtg atttgattaa acttataagt atttggtaaa tctctgtgat
     1741 aacgcatttt aaaaaatgta ttcataagtc taaatatctt aaacttagta gtatcactat
     1801 ctttgatttt gtaggcttga ttattccaat taaagctttg ctttgcaaat ttagagtttt
     1861 taaatttggg aaagcctttg tttttatctc taattgcttg ctctaaggca cgagaagatt
     1921 aatccttgct tgttgggtta caacactttt atagcttaat tctcttgctt ttataaggct
     1981 agttttattg attatctatc ttacttgcct ttaaataact tctatctttt ttatctaaat
     2041 tcttattttt atcccactgc tcttgctgta aatttaaaca aatattatag gcttgatata
     2101 gatgaaacat tgatgattaa taagcttttg ttgttctttg tttaggtaga attctatatt
     2161 taaaaccttt ggttatttgc attgctttgt tccattaggg ctttttttct ttttggttat
     2221 atattttttc ttagggtaat tatcttctat gccttgattt tctacatatt ttttaagagt
     2281 ttctagcatt attccgcata ggtattctat aaaaaattac tgattatgtc aaatacctaa
     2341 ctagagccat acaactaaca ctgtaagcaa ttcatctccc acttaagaag tgagagtttt
     2401 attgaataaa aaaagataaa tttaaagcaa gcaatctttt tttagacaac acttaaaccc
     2461 ttgcatgtat ttacagcaat atttatttca tcataaacaa cccccaaccc ataaaacctc
     2521 aataaacact ataaaataaa agtatttgta aagaacaagc aaacaataaa tctcaatcac
     2581 tcagacaaaa acaatctcaa ccgacccata aagcaataaa tcaagcaagc ataattaatt
     2641 taattgatta aactaataaa tttaatttat aagattaaca ataaaaaacc ataaattaac
     2701 caagctaatc ccacccaaac ccaaacaagc cataaattac acacactttt ttacaaacat
     2761 caattaaata gcaagaccat cgatgataaa aaatttatct caagtataac attcattctc
     2821 gccaacaaga ataaacaatc atagtctatc caccctaacc caacattaac ccctaaccca
     2881 accaagaagt gtataacaac cccaacccat aaacctcaat aaacactata aaataaactt
     2941 gagtgattaa aaatccaacc caattattga acaaacccaa cctacataat aaaatataaa
     3001 ctagacatat aaagaacaat tgacacataa aaatagattg aataaataaa cctatacaag
     3061 taaacataaa gattaattat tgatacaaaa gattcaataa ataaaaagaa taattgagat
     3121 ataaaaacat ataaactaaa caactcaaac aaccattaaa ttaacccaag ccaatcaaca
     3181 accatagcta agctgacaac acaacaaatc aatttaaata taaaactaca aattaaatca
     3241 acccaagcta attaaaccta taaacataaa aaataattaa atataaaaac aacgattgac
     3301 atataaaaac taagatttta aatctataag aataagataa ag
//
LOCUS       DARGED010000135         3161 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.136, whole genome shotgun sequence.
ACCESSION   DARGED010000135 DARGED010000000
VERSION     DARGED010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.136"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..212
                     /locus_tag="SFZ84_001582"
     CDS             <1..212
                     /locus_tag="SFZ84_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8203668.1"
                     /translation="LLDSMINISLILAKPFDYVRVDLYQFDKKIYIGELTFTHGAAGE
                     KVIPKEWDKKLGDLWRLKRLDNASK"
     gene            199..1302
                     /locus_tag="SFZ84_001583"
     CDS             199..1302
                     /locus_tag="SFZ84_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEG8203669.1"
                     /translation="MQANKNIQKLTPYLSIPHKIWNSSQSNILKLDWNEATIPPSPYV
                     IESIKKFLVNGNLNWYPNTKNLYLLDKIAEYTKQINSSFVELFEGSDSAHECIIDVFL
                     DKCDKIGIVSPTYDNFRSRANGVGIETISFTLDDNFNLDFDSLEYFIHEKRIKLLYLC
                     NPNNPTGKSYNIQKIKSLIINNPNVMFIIDEAYYEFTSQSVCDLVEQCNNLIITRTFS
                     KAFALASFRIGYIISHPENIESINKLRNPKSVPMLSQIAANAALEDLQYMRDYVDEVS
                     CARMEFVKFLNTLTTGGGGIFNDSVANFVLIQNENISLFVGFLEKEGIFIRNYSHLIS
                     KNCRISIGTRNQMSYVAEKIQEFAKKQGGFHLV"
     gene            1352..2524
                     /locus_tag="SFZ84_001584"
     CDS             1352..2524
                     /locus_tag="SFZ84_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEG8203670.1"
                     /translation="MLIKLNDYEKNITQKIKDLKNASGSHSPSIFTMAEQIPELNIKI
                     DSCFLSNPYATALFLRYLKEELIDGQKLRSVLEFYPSQNNIIAKTVADFIGIDPKNVF
                     IGNGAIEIIQAVMHNFVGKKIIVNIPTFSSYYEFAKSETNVVYYQLSKEDNYNLNIEH
                     YLNFVKNENPDSVVLINPNNPDGGYINYEKLRYILSELKYVKNIIIDESFIHFAYENK
                     DYNGINIEYLFKEFHNTIIIKSMSKDFGVAGIRIGYAIMSEDKIRGLLKNGYLWNSSG
                     LSEYFLRLYVRKNFFDEYDKVRREYIQETQTFFRKLSGIKQFKVYPSMANFALVELLD
                     GSSSTDFVAKMLIKYGIYMRTCNDKIGLEGEFIRIASRTLEENDMVLKSICDVFKE"
     gene            2528..>3161
                     /locus_tag="SFZ84_001585"
     CDS             2528..>3161
                     /locus_tag="SFZ84_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HEG8203671.1"
                     /translation="MSKEILALFDFCETLTNFQTLDRYLPLAGSKNINYTQSKNLARR
                     ERFQRENLPYPRYEWLIDLDVDLAEEIAQEFVYTDVMANLNQNVMDRLFWHQDEGHTI
                     VIVSGGLTIYIKEFARIYNIENIVAVDLEIYKNKLTGNIDGIHTMQERKLYKLAQKFN
                     LKQFDLKNSYAYSDCVSDIPLLSLVGNPNVIECGKDLQWARILGFNILLKY"
BASE COUNT         1131 a          322 c          552 g         1156 t
ORIGIN      
        1 atcttttgga ttctatgata aatatttctt tgattcttgc aaaacctttt gattatgtta
       61 gagtcgattt atatcagttt gataagaaaa tttatattgg ggaattaact tttactcatg
      121 gtgcagctgg tgaaaaagtt attcctaaag agtgggataa gaaattgggg gatttgtggc
      181 gtttgaaaag gttggataat gcaagcaaat aaaaatattc aaaaacttac tccttattta
      241 tctattccac acaaaatatg gaattcgagt caatcaaata ttttgaaact tgattggaat
      301 gaggctacga ttccgccatc tccttatgtt atagaaagca ttaaaaaatt tttagttaat
      361 ggaaatttaa actggtatcc gaatacaaaa aatttatatt tattggataa aatagcagaa
      421 tataccaaac agataaatag ttcttttgtt gagttgtttg aaggatccga ttctgctcat
      481 gaatgcatca tcgatgtgtt tttagataaa tgtgataaaa tcggaattgt ttcccctact
      541 tatgataatt ttagatctag agctaatggg gtaggtattg aaactatttc atttacactt
      601 gatgataatt ttaatttaga ttttgatagt ttagaatatt ttatacatga aaagagaata
      661 aaacttttat atttatgtaa tccgaataat ccaaccggga aatcttataa tattcaaaaa
      721 attaagtctc taattattaa taatcctaat gtaatgttta ttattgatga agcctattat
      781 gaatttacta gccagagtgt atgtgatttg gttgaacaat gtaataattt aattataact
      841 cgaacatttt ctaaggcttt tgcattggcg agttttagga taggatatat aatttcacat
      901 ccagaaaata tagaatcaat aaataaatta agaaatccaa aaagtgttcc tatgctatct
      961 caaattgcag ctaatgcagc attggaggat ttacaatata tgagagatta tgtagatgaa
     1021 gtgagttgtg ctaggatgga atttgtgaaa tttttgaata ccttaactac tggcgggggg
     1081 gggatattca atgattctgt agcaaatttc gttttgattc aaaatgagaa tatatctctt
     1141 tttgtagggt ttttggaaaa agagggtatt tttattcgca actattctca tcttatttct
     1201 aaaaattgtc gtattagtat aggtacaaga aatcaaatga gttatgttgc tgaaaaaata
     1261 caagaatttg ctaaaaaaca aggaggtttt caccttgttt gatgcaatta tagtaagaat
     1321 tatttttact tttgtattct tcaaggattt gatgttgata aaacttaatg attatgaaaa
     1381 aaatattacg caaaagataa aagatttgaa aaatgcttct ggtagtcata gtccgagtat
     1441 ttttaccatg gctgagcaaa taccggaatt aaatataaaa attgattctt gttttttatc
     1501 taatccctat gcgacagctc tttttttaag atatttaaaa gaggagttaa tagatggtca
     1561 aaaactaagg tcagttttgg aattttatcc ttctcaaaat aatataattg ccaaaactgt
     1621 tgcagatttt ataggaattg atcctaaaaa tgtttttatt ggaaatggtg ctatagagat
     1681 tattcaagct gtaatgcata attttgtagg taaaaagatc attgttaata ttcctacttt
     1741 ttcatcttat tatgaatttg ctaagtctga aacaaatgtt gtttattatc aactttctaa
     1801 agaagataat tataacttga atatagaaca ctatcttaac tttgttaaaa atgaaaatcc
     1861 agatagtgta gttttaataa atcctaataa tccggatgga ggatatatta actatgagaa
     1921 attaagatac attttaagtg aattgaaata tgttaaaaat attattattg atgagtcctt
     1981 tattcatttt gcttatgaaa ataaggatta taatgggatt aatattgagt atctttttaa
     2041 agaatttcat aatactatta ttatcaaaag tatgtctaaa gattttggcg tagcagggat
     2101 tagaataggt tatgcaatta tgtcagaaga taagataaga ggtttattga aaaatggata
     2161 tttgtggaat tcttcgggac ttagtgaata ttttttaaga ttatatgtaa gaaaaaactt
     2221 ttttgatgaa tatgacaagg ttagaaggga atatatacaa gaaactcaga ctttttttag
     2281 aaagttaagt ggaattaaac aatttaaggt ttatcctagt atggctaatt ttgctcttgt
     2341 ggagcttttg gatggtagtt ctagtacaga ttttgttgct aaaatgctga ttaaatatgg
     2401 tatttatatg agaacttgca atgataagat aggtttagaa ggagaattta ttagaattgc
     2461 aagtcgaact ttagaggaga atgatatggt attaaaatca atttgtgatg tttttaagga
     2521 ataaaatatg tctaaggaaa ttttggcctt atttgatttt tgtgaaactt taactaattt
     2581 tcaaacgctt gatagatatt tgcctttagc tggatctaaa aatattaatt atacgcaaag
     2641 taaaaattta gcaagaagag aaaggtttca aagagaaaac cttccttatc ctcgttatga
     2701 atggttaatt gatctcgatg ttgatttggc agaagaaatt gctcaagagt ttgtttatac
     2761 tgatgtgatg gcaaatctta atcaaaatgt tatggataga cttttttggc atcaagatga
     2821 aggccacaca atcgttatag tatcaggtgg tcttacgatt tatattaaag aatttgctag
     2881 aatttataat attgagaata ttgtggccgt agatcttgaa atttataaga ataaattaac
     2941 tggaaatata gatggaattc ataccatgca agaaagaaaa ctttacaaat tagctcaaaa
     3001 atttaactta aaacaatttg atttaaaaaa ttcttatgcg tatagtgatt gtgtaagcga
     3061 tataccttta ttatcattag ttggaaatcc aaatgttatt gaatgtggta aagatttaca
     3121 atgggctaga attttaggtt ttaatatttt gttgaagtat t
//
LOCUS       DARGED010000136         3131 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.137, whole genome shotgun sequence.
ACCESSION   DARGED010000136 DARGED010000000
VERSION     DARGED010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.137"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..727)
                     /locus_tag="SFZ84_001586"
     CDS             complement(<1..727)
                     /locus_tag="SFZ84_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203672.1"
                     /translation="MKKIGVVIPIYNVEKYLKECLDSVINQTYINLEIILVNDGSTDE
                     NSLNIAKEYTLKDKRITLFDKKNGGLSSARNVGIEYFSGEYKLKNKTQHIKENSLIEF
                     QLDGNNPYNIYKAYKSSQAFNNEKDLTNFTYPSIDYIIFLDSDNYWKLNCIEECVIRM
                     KNVDVLWFDHDCTYEDNIKNKHKKTRMEIFDFKKECIITPKEYANRALSVGSRDISFG
                     WNGMIDFNFLKKIKLKFINFIINE"
     gene            complement(731..2278)
                     /locus_tag="SFZ84_001587"
     CDS             complement(731..2278)
                     /locus_tag="SFZ84_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8203673.1"
                     /translation="MNLKQISAIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVWRIFNKNFTRFNDNLVHESLVLPSNA
                     KKIYLKNGLRHYAFRDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCSLKHIWQEDEGFRAAKNRNNAI
                     RVSKSEYIILIDGDMILEKDFIKNHFEFAKRKVILQGSRIILNEKESEEILKNDDYSL
                     AFSKKDFKSYKNSFLAKIIYKISKIDQKFFNTKEIIKGSKTCNMSFFKADFDELDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHEENSKKMLESNHQIYLDTIK
                     NKKISWR"
     gene            complement(2275..>3131)
                     /gene="htrB"
                     /locus_tag="SFZ84_001588"
     CDS             complement(2275..>3131)
                     /gene="htrB"
                     /locus_tag="SFZ84_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG8203674.1"
                     /translation="YYILKFFVTFMPDCILHFLALIVARIAFHLNKKHRKIINTNLQI
                     CFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFINENFLIDALALN
                     RPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSRTQFDIELIDKK
                     GGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASLIAQRSNALIIP
                     VYAYKEDGKFCIEFFKVKDSQNASLEELTLYQAQSCEEMIKKRPWEYFFFHRRFASYN
                     KEIYKDAK"
BASE COUNT         1021 a          491 c          365 g         1254 t
ORIGIN      
        1 cttcattgat aataaaattt ataaatttaa gtttaatttt ctttaaaaaa ttaaaatcaa
       61 tcattccatt ccatccaaaa gaaatatctc tagatcctac acttaatgct cgatttgcat
      121 attcttttgg agtgattata cattcttttt taaaatcaaa aatttccatc cttgtttttt
      181 tgtgcttatt ttttatattg tcttcatagg tgcaatcatg gtcaaaccac aatacatcca
      241 catttttcat tcttataacg cattcttcta tgcagtttag tttccaataa ttatcactat
      301 ctaagaatat aatataatct atactaggat aagtaaaatt ggttaaatct ttttcattat
      361 taaaagcttg agagctttta tatgctttat atatattata aggattatta ccatccaatt
      421 gaaattctat taaagaattt tcttttatat gttgagtttt gttttttaat ttatactccc
      481 cactaaagta ttctatacct acatttctag ctgaacttaa acccccattt ttcttatcaa
      541 aaagagttat tcttttatct tttaaggtat attcttttgc aatattgagt gagttttcat
      601 ctgtactacc atcatttaca agtatgattt ctaagttaat ataagtttga ttgatgacac
      661 tgtctaaaca ttcttttaaa tatttttcta cattatagat tggtataact acacctattt
      721 tcttcatgtt ttatctccaa gaaatctttt tatttttgat ggtatctaaa taaatttgat
      781 gattactttc aagcattttt ttactatttt cttcgtgata aatatgataa gcaatagctt
      841 taaattttaa gcgtctaaaa atacctttat taaacaaaaa tctagcaaca aattcgctat
      901 cttctctacc ccaaccaata aaattttcat taaaaccatc aagttcatca aaatcggctt
      961 taaaaaaact catattgcag gttttacttc cctttattat ttctttggta ttaaaaaatt
     1021 tttgatctat ttttgaaatt ttatagataa ttttggctaa aaaagaattt ttatagcttt
     1081 taaaatcttt tttgctaaaa gctaaactat aatcatcatt ttttaagatt tcttcgcttt
     1141 ctttttcgtt taaaattatt cttgagcctt gtaaaattac tttgcgtttc gcaaattcga
     1201 aatgattttt tataaagtct ttttctaaaa tcatatcacc gtcaattaaa attatatatt
     1261 cacttttaga aaccctaatg gcattatttc tattttttgc agcgcgaaaa ccctcatctt
     1321 cttgccaaat gtgttttaaa gagcaaggaa aatctttttg atattcttca ataagccttg
     1381 ctgtatcttc tttgctacca tcatctgcga ttaaaacttc attgggtaaa aaggctagat
     1441 ttttaacact atcaagcact aatttaaggc gttctttttg attataagtt gttattatta
     1501 aagcgcaagt ttttggcttt tgcttttgaa gttcatataa tttcatgtat ttaaaaaaag
     1561 tccctaaggc attgcaaacg ctaattataa aacccttata accatataaa aagccatttt
     1621 ttaaaaaata atttctaaaa aaagtccaaa aagctcttaa atttgctttt aaaacaccac
     1681 tttttttgtg tatattttgt tttgcccaaa ggcttgagta gtactgcatt ttgtcaatta
     1741 ggtgggaaat atctctaaaa gcataatgcc ttaatccatt tttaagataa atttttttag
     1801 cattacttgg caaaacaagg ctttcatgta ctaaattatc attaaaacga gtgaaatttt
     1861 tattaaaaat tctccaaaca taatcaggcc accaaccaca tgcctttatc cattcgcctt
     1921 tatagagatt tttacgacta agtgcgatga tattatcttc ttgaagttct aaatttttaa
     1981 gctctttaat acactcattt tcaagcactt catcagcatc aatgcttaaa atccaatcat
     2041 tttttgcata acttaaagca aggtttttta aagctccaaa acctataaaa gcactgtggt
     2101 aaatgtgcaa attagcaaaa tcttttttaa attcattagc tatatttagg gtattatcac
     2161 tactttcatt gttaagtaaa ataatttcat caaaatcttt taaagaattt aaacattcaa
     2221 gcaaggtttg ttttgcattt tttacgatga taatagcact tatttgcttt agattcattt
     2281 tgcatccttg taaatttcct tattataact tgcaaagcgt ctatgaaaaa aaaagtattc
     2341 ccaaggtctt tttttaatca tttcttcgca actttgtgct tgataaagtg tcagttcttc
     2401 taagcttgca ttttgagaat cttttacttt aaaaaactct atgcaaaatt taccatcttc
     2461 tttataggca taaacaggga tgatcaaagc attacttctt tgtgcgataa ggcttgctcc
     2521 catttgataa ttcacttctt tgttaaaaaa ttttaatctt acgctttcgt tttctacaca
     2581 gtcttgatca gttaaaattc ccaaagttct cccttttttt agagcgctta gcatttgtct
     2641 tatgccgcct tttttgtcga taagttctat gtcaaattgg gtgcgacttt ggcttaaaat
     2701 ttcatacata atttcacttt ttaacttttt ccctactata gaaatcgcac catatttagc
     2761 tgcataagca aggcttaaaa tttcccagtt tccatagtgt gcagttgtga agataatagg
     2821 acgatttaaa gctagagcat ctataagaaa attttcattg atgaaattta ctttattgag
     2881 aattttttct ttggtggtgt tttgattttg caaacaatca atcccaaatt gagcaaaatt
     2941 ttcataaatt tttaaagaca atttatcgcg ttctttttga gtgtattgag gaaaacagat
     3001 ttgcaaattt gtattgatga ttttgcggtg ttttttgtta agatgaaaag cgattcttgc
     3061 tacaatcaaa gctaaaaaat gcaagataca atcaggcata aaagtaacaa aaaatttcaa
     3121 aatataataa a
//
LOCUS       DARGED010000137         3119 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.138, whole genome shotgun sequence.
ACCESSION   DARGED010000137 DARGED010000000
VERSION     DARGED010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3119
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.138"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(438..524)
                     /locus_tag="SFZ84_001589"
     tRNA            complement(438..524)
                     /locus_tag="SFZ84_001589"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(488..490),aa:Leu,seq:caa)
     gene            706..2958
                     /gene="flgL"
                     /locus_tag="SFZ84_001590"
     CDS             706..2958
                     /gene="flgL"
                     /locus_tag="SFZ84_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG8203675.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITKLNNPVTVTINNQQFTIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
BASE COUNT         1198 a          443 c          504 g          974 t
ORIGIN      
        1 agatttagca ggtgtgattt gttaatgaaa atatacatct tcaattaatt tgaaaaaata
       61 gcaaggtttt aaaaaagcaa tacaagagag aaaatttaaa gaatttgggt aatgcaattg
      121 aatgcaactg aattttagta gatataaatt taaataaaat ttatcaagaa gttttttcta
      181 taaagactat gcatttttta aaaaaaagta tttttaaacc aaagtttttc ctatgataat
      241 aaaacctatt atttaagaaa ttaaacttaa aaatgaaaat ttgattatca aagttcctag
      301 tgatttttca aagctttaga agatattata aaactcacat agtataatca gaaagctatt
      361 tttgaaaata taaaaactct ttttttaaga ttttaatata aattgccaaa aaataacact
      421 tgagagtaaa aaacaaatgg tgcctgaggt cggactcgaa ccgacacaag gttgccctta
      481 ccagattttg agtctggcgc gtctaccagt ttcaccactc gggctcattt tataagattt
      541 aaagctaaaa ttatactttt ttaggctaaa aaatacttta aaaataaaaa gtattttcaa
      601 aaagacaata taaaattata taatttaaat ttttggaaca gttattgctt ttgtttatta
      661 gcaatgtttg aaaagatttt aactttaata ctttagagga aaaaaatgag aattacaaat
      721 aaacttaact tcacaaatag tgtgaataat tctatgggcg gtcaaagtgc tttatatcag
      781 atatctcaac aacttgcttc aggtttgaaa atacaaaatt catatgaaga tgcaagcact
      841 tatatagata atacgcgtct tgaatatgaa attaaaacat tagaacaagt aaaagaatca
      901 acaagtagag ctcaagaaat gactcaaaat agtatgaaag ctttacaaga tatggttaaa
      961 cttcttgaag attttaaagt taaagtaacc caagctgcaa gcgatagcaa ttctcaaacc
     1021 tcaagagaag ctatagcaaa agaactagaa cgtataaaag aaagcatagt tcagcttgca
     1081 aataccagtg ttaatggtca gtatcttttt gcaggttctc aagttgcaaa caaacctttt
     1141 gattctaatg gaaattatta tggagataaa aataatatta atgtagtaac tggagctgga
     1201 actgaaagcc catacaatat accaggttgg gatttatttt ttaaagcaga tggagactat
     1261 aaaaaacaaa taagcactaa tgttagtttt acagataatc gttgggattt aaataaagac
     1321 cctgataaaa ctaaatatct cacaggagat tctaaatggc aacaacttat cggacagggt
     1381 tatgtaaaag ataatagctt agatgctgac aaagactttg agtatgatga tagcaaacta
     1441 gattttcctc caacaactct ttatgttcaa ggaaccaagc ctgatggaac aagttttaaa
     1501 agtgctgtac tcgtcaaacc cgaagatact ttagaagatg taatggaaaa tattggagct
     1561 ctttatggta atactccaaa taataaagta gtagaagtaa gtatgaatga tagtggtcaa
     1621 attcaaatta cagatctaaa gcaaggtaat aataaactcg attttcatgc tgtagctttc
     1681 acaccacaag ctgataccaa agatgaactt aaaaatatta ttgaagctgc taatcaagag
     1741 ggtatttcaa tgaatgaagt tacaaatagg gttatgcaag ctgctacggc tgctcctagt
     1801 aatggagata taacaaaatt aaacaaccct gtaactgtaa caatcaacaa tcaacaattc
     1861 acaatcgatt taaaacaaac tgattttatc aaaagtaaaa tgacagatac agatggaaat
     1921 gctgctaatg gagctgatta cgataatgtg tattttgaaa aaaatggcaa tactgtttat
     1981 ggtaatgttt ctcaagttat caaaggaagc aatgcttatg ccactgattc aaccaaactt
     2041 agcgaggtaa tggcaggaga tagcctaaat ggtactactt taaatttaaa agtcaattcc
     2101 aaaggtggaa attcttacga tgttactata aatttacaaa cttcaactgt aagctatcct
     2161 gatcctaata atccaggtca aaccataagc tttcctatta tgcatactaa tcctgcaact
     2221 ggaaatagtg gggttgttac aggatcaaat gatattactt atggtcaaat taatgatatt
     2281 ataggtatgt ttgctgcaga taaaattcct acaacaacca tacaagccaa taatggtcaa
     2341 attaataatg cagattatac ccaaatacaa caactcatga aagattcaca agctactgtt
     2401 gatgtaagta tggattataa aggtcgtatt agtgttactg ataaactttc ttcaggcact
     2461 aatatagaaa tttctcttag tgattctcaa agtggccaat ttccagcacc tccttttacc
     2521 acaacttcta ctgtacaaaa tggtccaaat tttagtttta gcgcgaataa ttctttaact
     2581 atagatgagc caaatgtgga tattattaaa gatttagatt caatgattga tgctgtttta
     2641 aaaggcaata tgagagcaga ctccgaaagt gaaaacccta gaaatacagg tatgcaagga
     2701 gctttagaaa gacttgatca tttagcagat catgttagca agcttaatac aactatggga
     2761 gcatatcata atactatcga aggtgttaat acacgcacat cctttttaag cgttaatgtc
     2821 caaagtataa aatcaaatgt gattgatgta gattatggtg aggcaatgat gaatttaatg
     2881 caagttcaac ttgcatatca agcttctctt aaagctagta caacaatttc tcaacttagc
     2941 ttattaaatt atatgtaaaa ttttttatgg tataatttgg ctttgatttt attttcaagg
     3001 aaagaatatt aaaaaagaag ccatttttac cagctccacg cttgttattt tttatctttg
     3061 tctttgtatg ctagcacctg gcatgggaga atgggtttac aaggctaatt tatttttat
//
LOCUS       DARGED010000138         3108 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.139, whole genome shotgun sequence.
ACCESSION   DARGED010000138 DARGED010000000
VERSION     DARGED010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.139"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..77
                     /locus_tag="SFZ84_001591"
     CDS             <1..77
                     /locus_tag="SFZ84_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate/glutamate racemase"
                     /protein_id="HEG8203676.1"
                     /translation="TNIKIFDTSLIHALDAASEALKDL"
     gene            complement(271..1395)
                     /gene="cydB"
                     /locus_tag="SFZ84_001592"
     CDS             complement(271..1395)
                     /gene="cydB"
                     /locus_tag="SFZ84_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG8203677.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFL
                     PFFLGFLVWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(1395..2957)
                     /locus_tag="SFZ84_001593"
     CDS             complement(1395..2957)
                     /locus_tag="SFZ84_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG8203678.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(2958..>3108)
                     /locus_tag="SFZ84_001594"
     CDS             complement(2958..>3108)
                     /locus_tag="SFZ84_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG8203679.1"
                     /translation="TLWKIIFIKLFVMFVILKLFVFDVNFNSIFKSDKEKSTFVLKNL
                     TLEGK"
BASE COUNT         1163 a          588 c          432 g          925 t
ORIGIN      
        1 atacaaatat caaaattttt gatacaagtc ttattcacgc ccttgatgct gctagtgaag
       61 ctttaaaaga tttataatta aaagatgccc aaaaatgggc aaattgcaat attttgaaaa
      121 gatttatact tatatcggtt taaatcttat cttgctttat agtttgctat ctttttctaa
      181 ttgattgata tttagcatta taaatttata gctcagataa attactaaag gccaagccaa
      241 taaaaacaaa gcatgtaaca ttttttctcc ttaatatgcg tgatcatcgt ttgcgatttc
      301 ttcgcgtgtg atttttactt tatccattgc attccaaaca tagataatat aagctaaaac
      361 aaaaggtaca agtaaagaca cataagccat gacgcttaga gtataatagc ttgaacttgc
      421 attttttaaa gttaaagaac tttgcaaatc acttaaagat gggtaaaaag cactttgacc
      481 taaaccaatg cttgataata aagcaaaaac tgttaaaacc gttccaagtc ctagggtaaa
      541 aatagcttta gagcaacctt ttgctccttg aaccatacct aaaagcacta aaatcacacc
      601 aacaacaagc aagatagcaa aaatcatttg atttaagaaa ttatataaat acaaattcgc
      661 actcatgctt acaactccat ttgcatctac actaaaacca tcttttaaga aaatccacac
      721 taaaaaacct aagaaaaaag gtaaaaataa aatgctattg accatgagtt ttttcatagc
      781 tcttattttg atattctcat cattgatatt gttcataaaa tacgctgcac ctaaaagcct
      841 tgctaaaaat actaaagcta agcctaagag ataattaaaa ggattaagta aaagttctaa
      901 gccatgcaaa ggattttgcc aagaaacaaa attatgctca tttaagataa attcagagcc
      961 gctaaaaaag ctacttaccg caactccgat taaaaacaca cctaaatagc cattgatttt
     1021 aagaaaaatt tcataggttt tagagccata aacattattt tcttttttgc gatattcata
     1081 agctacagct tgtaaaataa aacaaaataa aatacaaagc caagcccaat aagcaccgcc
     1141 aaaacttgta ctataaaaaa gtggaaaagc cgcaaaagct gctccaccaa aaagtacgag
     1201 agttgtaaaa ccaagctccc atttacgccc taaagaattg actagcatgg ttttttcaag
     1261 ctcatccttg ctaagctcat cgattaaagt ctgtccacct tggacaaaaa acataaaaac
     1321 caaaagtccg ccgagcaaac ttaaaatcaa ccaccaataa atttgcaaac cttcaagttc
     1381 taaaccaaaa aacattattt ttctcctttg cccataagtg gagtatgtcc tgcatgtgcg
     1441 tcaaaacctt ttttaatctg agtaagcatg attttaactt ctgcaatcaa taaggctgta
     1501 aaaagtactg caaaaatcca aaatgaaatt tgaacattga cttttccaag ttgtgttgct
     1561 gcgatatgta caggaagcaa gtcttgaatt gcccaaggtt gtctgcctac ttcagcaaca
     1621 atccaacctg cttcagcggc aatataaccc aatggaatgg ataacaaaca cacccaaagt
     1681 acttttctaa atttctcaat atcatttgcc atggtaagat aaagcgtaac gatgaaaagt
     1741 aaaaagaaaa aacttcctaa agcaaccatg atatgaaagc tataaaaagt taaagccaca
     1801 ggtggaatag tatcgcttgg tttttctaaa tatccataac caaaatcttt aaaatgagtt
     1861 tctaaaatgg atttgtgatt tgccatagct attgtatcat tgttttcttt agcaagttta
     1921 tagtctttta gagcttgtat agcgattttt cctctatcga tacgattttg cataggttct
     1981 atacctttgc tttcatttcc atagatcaaa tcttcaattc ctggaacaaa agaatttgga
     2041 tcacggtttc ctaatataga aagagcgtaa ggtatagtaa tgtcaaataa aaacacactt
     2101 tcgttattat ctatggtttt tttaggattt aaaattccaa aaggtacaag tcctgcacga
     2161 tgttcacctt gataaacccc ttccatagct gcaagtttca taggttgggt ttgagttaca
     2221 cggtaagcgc tttcatctcc gctgaaaaac aaaaagattg aacaaaccaa accaaaacta
     2281 gctcctacaa ctaagctttt tttagcctcg ataatatggc gtccttttaa cataaaccaa
     2341 gctgaaattc ccattacaaa taaagctgaa atcacataac cactgcctat ggtatgtaaa
     2401 aattttgaaa tagctacagg agaaagtgct acttcaaaaa agctttgcat ttcatttctt
     2461 gctgtgtcag ggttaaagct cattcctaca ggatattgca tccaaccatt tgccactaaa
     2521 atccaaaaag cagaaagatt acttcctata gccacacacc aagttgaaag taagtgaaaa
     2581 cccttgctta ctttatccca gccaaaaaac ataactgcaa aaaaagtagc ctctaaaaaa
     2641 aatgccataa taccttcaac cgccaaaggt gcaccaaaaa tatcacccac aaaccagcta
     2701 taatttgccc agtttgttcc aaattcaaat tccattataa tgcctgtagc tacaccgata
     2761 gcaaaattta tagcaaataa tgaaagccaa aatttggtga tttttttcca tctttcattt
     2821 ttagttttta catagatggt ttccatgata gcgatcataa aagacaagcc taaggttaaa
     2881 ggcacaaaca aaaaatgata aagtgcagtt aaagcaaact gcgctcttga ccaatcaacg
     2941 ctactaagtt cgttcattta ttttccttcg agtgtaagat ttttgagtac aaaagtgctt
     3001 ttttctttgt cgcttttaaa aatagaatta aaatttacat caaaaacaaa aagttttaaa
     3061 atcacaaaca taacaaaaag tttgataaaa ataattttcc aaagggtc
//
LOCUS       DARGED010000139         3061 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.140, whole genome shotgun sequence.
ACCESSION   DARGED010000139 DARGED010000000
VERSION     DARGED010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3061
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.140"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..338
                     /locus_tag="SFZ84_001595"
     CDS             <1..338
                     /locus_tag="SFZ84_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8203680.1"
                     /translation="ILDMDSSVGFYIDKQDYNKLKNDSIFYKQVIDYLRNFAYELKNR
                     IQIEEDLMLKVEDVLRHLYNNKNARVSAKNILDEELVYIKQHRPDIVASWKYYQEFEK
                     MCKELDGDI"
     gene            405..1178
                     /locus_tag="SFZ84_001596"
     CDS             405..1178
                     /locus_tag="SFZ84_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8203681.1"
                     /translation="MKQGDFTKVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFIDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            1231..1992
                     /locus_tag="SFZ84_001597"
     CDS             1231..1992
                     /locus_tag="SFZ84_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8203682.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISNKISQRLPKEFSIKYTTRCWSAKKI"
     gene            2007..>3061
                     /locus_tag="SFZ84_001598"
     CDS             2007..>3061
                     /locus_tag="SFZ84_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203683.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRNYLEFKDIRLQKIIELIKELEVLYDCHFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFISKKLDENIA
                     QKLVNFYLDKLNKNHEL"
BASE COUNT         1162 a          348 c          575 g          976 t
ORIGIN      
        1 gtattttaga tatggatagt tcagtgggtt tttatattga taagcaagat tataataaat
       61 taaaaaatga tagtattttt tataagcaag taatagatta tcttcggaat tttgcttatg
      121 aattaaaaaa tagaattcaa atagaagaag atttgatgct taaagttgaa gatgttttga
      181 gacatttata taataataaa aatgctagag taagtgctaa aaatatcttg gatgaagaat
      241 tggtttatat taaacaacat cgtccagata tagtagcttc ttggaaatat taccaagaat
      301 ttgaaaaaat gtgcaaggag ttggatggtg atatttagga gaaagatttg taaattaata
      361 aaaaaaagat ataattatgt tttaatttag aaaaaggaat gaatatgaaa caaggggatt
      421 ttacaaaagt tgcaaaacat tatcacaata gacctgctta tagtccgttt ttacttgaaa
      481 aacttgtagc ttgtatcaat gataaaaata aaaatttaaa agatttaaat attgttgaag
      541 taggagctgg aactggaaaa cttactaaga tgttgggaga aatgtttgga tgccaaatta
      601 gtgctgtgga accaaacgat aatatgcgtg aagaagggca aaaatttaca caaaatttat
      661 caaatatttc ttggcataaa gggagtggcg aagaaacctg catgagcaat aatcaagctg
      721 attgggtcat catggctagt tctttccatt ggacagatcc taaaaaatct ctcccagaat
      781 ttaatcgtat attgacaggg ggggggtatt ttactgcgat ttggaatcct cgccacattg
      841 tagagggttc ggtttttgat gaaattgaaa aggagattaa acatattgtt ccagatcttg
      901 ctcgtgtaag cagtggcact caaaatgtta aaaaatggga agaaattctt gtttcaacag
      961 gagatttcat agactgcttt tttatggagt gtgactataa agagttttgg gataaagagc
     1021 gttatcttgg agcttggcat tctgtaaatg atatacaagc acaagcaggt gaaaaaagat
     1081 ggaaggaaat tttagagatg atagaagcta aaatttctca tatgcaaagt atagagattc
     1141 cttataaaat aagagcatgg acagctagaa aagcataaaa tacctccttt ttttcatcaa
     1201 gcttgtcaaa gatgaaaaaa aggaaataaa atgcaaaaac tagtagaaca agtgtgggat
     1261 tataccaagc atgctaaatt ttatagctat agaccaaatt atgctccaaa aactatagat
     1321 atgcttatta gcttagttgg aaaaaaagat attaaagtcg ctgatatcgg tgcaggaact
     1381 ggaaatttaa gcattatgct tttagaaaga ggatgtaagg tagtatctgt agaaccaaat
     1441 gatgcgatgc gtgagatcgg gatagaaaga accaaggatc aaaagattga ctgggttaga
     1501 gcaacaggct taaactcaac actccaaaat agtgaatttg attgggtgac ttttggtagt
     1561 agttttaatg taatggatag aaatgaagcc ttagaggaag cgcatcgctt attaaaatca
     1621 gagggatatt tttcttgtat gtggaatcac agggatttaa acgatcctgt gcaaaaaata
     1681 gctgaagata ctattgtaga atttgtacca aattatacaa ggggaacaag aagagaagat
     1741 caaagaccaa ttatagagag tcgaaaggat ctttttgata atattgttta tattgaagag
     1801 gatttttatt ttcatcaaag cattgaaaat tatattaatg catggaagag tgttaaaaat
     1861 ccttactggg atttggagac tgatgaagga aatgaacttt ttaataaaat tagtaataaa
     1921 atttcacaaa gacttcctaa ggaatttagc ataaaatata ccactcgttg ttggagtgct
     1981 aaaaaaatat aaaactaagg aaaaacatgg cggagttaaa atttaaaacc aaagcacaaa
     2041 atttaaaaaa tttacaaaca aaattaaaaa aagcaaaagt tctacctttg gttttaactt
     2101 cgcttgaaga attaatatca aatgaagata aagttttaca ggacattcaa accttaaagg
     2161 ctaatagact cattataaga agttcttctt taagtgaaga tagcatgaaa aactccaatg
     2221 caggtgcttt tctttctttg gcaaatatta aagctgattc taaagatgag ttattaaaag
     2281 ctttatatga agttgccaat tctatgccat caaaaagtga tgaaatttta gttcaaccta
     2341 tgcttgaaaa cattactctt tgtggagttg gttttagtgt tgataaggat aatttttccc
     2401 cttatttttg tcttcaatat gatgaaaatg gttcaaatag ctctattaca gatggaagca
     2461 gtaagagtgc aaaaacttac tatcattaca gaaattattt agaatttaaa gatattagac
     2521 ttcaaaaaat tatagaactt ataaaagaat tagaagtttt atatgattgt cattttttag
     2581 atgttgaatt tgcatttgct attcaagatg ataaggaaga acttttttgc ttacaagtgc
     2641 gtcctttggt tatgcatgaa aaaaataatt tatttcattc tttaccaaaa gaagctttat
     2701 atagatttta taaacgtttt gagtctttaa aagaatcaag atctagagtt ttgggagata
     2761 aagctatttt tggggtaatg cctgattgga atccagctga aatcataggg ttaagaccta
     2821 agcgtttagc ttttagttta tataaagaaa tcattacgga taatatctgg gcgtatcaaa
     2881 gagataatta tggttataga gatctaagat cccatccttt aatccattct tttttaggca
     2941 ttccttatgt ggatgtaaga ttatctttta attcttttat atcaaaaaaa ttagatgaaa
     3001 atattgcaca aaaacttgtc aatttttact tagataagct taataaaaat catgaattgc
     3061 a
//
LOCUS       DARGED010000140         3047 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.141, whole genome shotgun sequence.
ACCESSION   DARGED010000140 DARGED010000000
VERSION     DARGED010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.141"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            135..1199
                     /gene="mqnE"
                     /locus_tag="SFZ84_001599"
     CDS             135..1199
                     /gene="mqnE"
                     /locus_tag="SFZ84_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG8203684.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTNLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1209..2528
                     /locus_tag="SFZ84_001600"
     CDS             1209..2528
                     /locus_tag="SFZ84_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG8203685.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLNIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2542..2985
                     /locus_tag="SFZ84_001601"
     CDS             2542..2985
                     /locus_tag="SFZ84_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEG8203686.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
BASE COUNT         1058 a          462 c          511 g         1016 t
ORIGIN      
        1 tctctttaaa attttaatat tttaataata atcttaacaa aaatatcttt tattttggct
       61 ttttctataa actctttttc agtaagcaaa aattataatg ctttatttaa aaacagcaaa
      121 agagtaaaat taaaatgaaa aatttaatca ccaaactaga aaatgaagaa agattaaacc
      181 aagaagaagc caatgcactt tgggatctag atctttttac cttaggcaaa tacgctcaca
      241 aaaaacgcac taaacttcat ggaaaaaaag tctattttaa tatcaatcgc catatcaacc
      301 caactaatat ctgtgcagat acctgtaaat tttgcgcctt ttcagcgcac cgaaaaaatc
      361 ctaatcctta tttgatgact catgaagaaa tcatgaaaat cgtcgatgaa actgtaaaac
      421 gagaaaccaa agaagtgcat atcgtttcag ctcacaacaa agatacaact tggcaatggt
      481 atttagaaat ttttaaaatg ataaaagaaa aatatcctaa tcttcatgta aaagctatga
      541 ctgctgctga aattgatttt ttacatcgtc gttttaaaat gagttatgaa gaagtgatag
      601 aaaaaatgct tgaatacggc gttgattcca tgccaggcgg tggagctgaa atttttgatg
      661 aagaagtgcg taagaaaatt tgtcatggaa aagttagcag tgaaaattgg cttaaaattc
      721 ataaactttg gcatgaaaaa agcaagcaaa gtaatgctac catgcttttt ggacatatag
      781 aagaaagaca tcacaggatc gatcatatgt taagactgcg tgatcttcaa gatcaaaccg
      841 gtggattcaa tgcttttatc cctctagttt ggcaaaggga taatagcttt atacaaactg
      901 ataaaatcat ggatagtgaa gaaattttaa aaaccattgc catttctcgt ttagtgcttg
      961 ataatatcaa aaatatcaaa gcttactggg caacaatgac tttaaattta gccatggtag
     1021 cacaagaatt tggagctaat gatttagacg gcactataga aaaagaaagt atacaaagtg
     1081 caggtggtgc aaagtccgcc aaaggcacaa atttaaaaac ttttatcgat atgataaaaa
     1141 cttcaaatct tattcctgta gaacgcgata gtttatacaa tgagctaaaa acctactaag
     1201 gagaaaaaat gagctttttt aaactcaaag aaaacaatac gagttttaaa accgaagtta
     1261 tagcaggact tactactttt ttagctatgg tttacattat ccccgtaaat tctagcatag
     1321 taggaaatac aggaatgcct atagaagctt taatcaccgc aacagcttta attaccatag
     1381 ttgcaagtgc ttttaatgct ttttttgcca atactcctgt agctatgagt gtaggaatgg
     1441 gtttaaatgc ttattttacc tttgcggttt gtttaggtca aaacatagct tggcaaagtg
     1501 ccttaggagc tgtttttatt tcaagtatta tttttctcat actttctttt acgcattttc
     1561 gcctttgggt aatccgcaat attccaaaag atttacgcct tgcaatttgt gcgggcatag
     1621 gttgttttat tgcattttta ggcttaagtc aaatgggtgt gataatgcat aataaagata
     1681 ccttagtcag cataggaaat ttcaaaagcc ctcatgtgct ttttggaatt tttactctag
     1741 ctttaatcat ctttttttgg gctataaaac ttcgcggagc ttttattttg ggggtattag
     1801 caagctctat tattgcttgg attttccatt tagacaatgc aagttttcct gtgcaaatct
     1861 tttcttggcc aaattttagc atggaaaatg gtttaggagc catcttttta caacttaata
     1921 tcaaaagcgc cttaaatatt actatgatac ctataattct tacttttttt atcactcaac
     1981 tttttgatag cataggaact atcacaggtg tgggtgaaag aggaaagatt tttgatgatc
     2041 ccaaaaatgg agaaaaaaaa ctaagcaaaa ccttaatggc agatgcaaca ggatcagcct
     2101 taggagctat gacaggcact tctacagtta cagcctttgt tgaaagcact acaggggttg
     2161 aaagcggagg aagaactggg cttacagctt tagttgtagc tatttgtttt gcttttacac
     2221 tttttttact gccacttttt aaagccattc ctgcaaacgc aatatacccc gtacttgtaa
     2281 tggttggaat tttaatgttt atggaagtta aaaatataga ttttaaagat agtgctatag
     2341 ctgtagcaag cttttttact atcatcatga tgccttttac ttactccatc accacaggtt
     2401 ttgcttttgg ttttctttct tatttacttg taagaatttt taaacgcgaa tgggataaaa
     2461 tcaatcttgg cattatagtt ttaagtttat tatctttggg taatttttta cttatggcac
     2521 tacaataaat aaggatatat aatgatattt tactcctatg aagaatttaa agaagatgta
     2581 aaaattcttg ctaaagaaat taaagaagat tttaaccctg atgcactttt agctatagca
     2641 agagggggga tgagtttagg acactcttta gcagtggctt taaaaacgcg tcaacttttt
     2701 gctttaaact caattcatta cgataatacg aaaaaacttg atactattga aatttttaac
     2761 attcctgatt taagcaagca caaaaaaatt ctactcattg atgatatagt agatagtgga
     2821 gaaagtttag cagaaataaa aaaagttttg cttgaaaaat ttcctcatat agaacttaaa
     2881 attacaacca ttttttacaa aaaaaccgct cttttagaac ctgattttaa agtaaaagaa
     2941 gctactgaat gggtggattt ttactgggat ataaaccttg attaaaaatt tgctataatt
     3001 ttacttttaa aatttttagg agtttttgct tgagaataaa atttata
//
LOCUS       DARGED010000141         2946 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.142, whole genome shotgun sequence.
ACCESSION   DARGED010000141 DARGED010000000
VERSION     DARGED010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.142"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..2577
                     /locus_tag="SFZ84_001602"
     CDS             <1..2577
                     /locus_tag="SFZ84_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG8203687.1"
                     /translation="RTGSGIFALLLLLFSLVLLFPKFAKEILKIELDFTYLLKIEQAF
                     KSLLMRVFGGENEKEDVGKSEPIAPKLNILQDSIYGNLQINKKGETNNLEQIIKDSNI
                     NASKNSITTAKENFEKLKNQILDETIEIDKQSLKESRSFVYEHSQQVRNFAQKASKMS
                     ISLDEDFNFISEEEVDMIPERFLKPKKLEDIKQIDTNKNLDEPSYKRKNIEIPVSNQE
                     VKPKIFTKELELRENLIKKEKLEQEYKAYQNEILENKVKQEIKKLEEYDAINSSDIIE
                     GNKYSFNSPKTIKTETEESDKINENKNLDKADNIFEFAPIVEELNHPYIEPTPIKNIN
                     EIVIEEKNTLDFIQNTETKIDNEKTNDQEIKLQKAVLAKEIAINQALLREIEQGEVEK
                     PKDFTLPPLDFLANPKEHKQEINESEIDKKIYNLLEKLRRFKIGGDVISTYVGPVVTT
                     FEFRPSADVKVSRILNLQDDLTMALMAKSIRIQAPIPGKDVVGIEVPNDEIQTIYLRE
                     ILQSEVFKNAKSPLTIALGKDIVGNAFVTDLKKLPHLLIAGTTGSGKSVGINSMLLSL
                     LYRNSPKTLRLMMIDPKMLEFSIYNDIPHLLTPVITDPKKAVNALSNMVAEMERRYRL
                     MADAKTKNIENYNEKMKELGGEELPFIVVIIDELADLMMTAGKDVEFYIGRLAQMARA
                     SGIHLIVATQRPSVDVVTGLIKANLPSRISYKVGQKIDSKVILDAMGAESLLGRGDCL
                     FTPPGTSSIVRLHAPFASEFEIEKIVDFLKDQQSVEYDESFLKDQQSVGVTTNESFDG
                     EVDELYEEAKRVILEDGKTSISYLQRRLKIGYNRSANIIEQLTQNGILSEPDAKGQRE
                     IL"
     gene            complement(2663..2935)
                     /gene="rpsO"
                     /locus_tag="SFZ84_001603"
     CDS             complement(2663..2935)
                     /gene="rpsO"
                     /locus_tag="SFZ84_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG8203688.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
BASE COUNT         1171 a          397 c          496 g          882 t
ORIGIN      
        1 cgtacaggga gtggaatttt tgctctttta cttctactat tttctttggt tttattgttt
       61 ccaaaatttg caaaagaaat tttaaaaata gaattagatt ttacttattt attaaaaata
      121 gagcaagctt ttaaatcttt acttatgcgt gtatttggtg gagaaaacga gaaagaagat
      181 gtaggtaaat cagaacctat agctccaaaa ttaaatattt tgcaagatag tatttatgga
      241 aatttacaaa taaacaaaaa aggggaaacc aataacttag aacagataat taaagatagc
      301 aatatcaatg caagtaaaaa ttcaattacc acggccaagg aaaattttga aaaactaaaa
      361 aatcaaattt tagatgaaac catagagatt gataaacaaa gtttaaaaga atcaagaagt
      421 tttgtttatg agcattctca acaagtgcga aatttcgcac aaaaggctag taaaatgagc
      481 attagtcttg atgaagattt taattttatt tcagaagaag aggtagatat gattcctgaa
      541 cgttttttaa aacctaaaaa acttgaagat ataaagcaaa tagatacaaa taaaaattta
      601 gatgagccaa gttataaacg taaaaatatt gaaattccag tttctaatca agaagttaaa
      661 ccaaaaattt ttacaaaaga gcttgaactt agagagaatt tgataaaaaa agaaaaacta
      721 gaacaagaat acaaagccta tcaaaatgaa attttagaaa ataaagtaaa acaagaaatt
      781 aaaaaattag aagaatatga tgcgataaat tcaagcgata ttatagaagg gaataaatat
      841 agttttaata gcccaaaaac aattaaaaca gaaacagaag aatcagacaa aataaatgaa
      901 aataaaaatc tagataaagc agacaatatc tttgaatttg ctcccattgt agaagagtta
      961 aatcatcctt atatagaacc tactcctata aaaaatataa atgaaatagt tatagaagaa
     1021 aaaaatacac tcgattttat ccaaaataca gaaactaaaa tcgataatga aaaaacaaat
     1081 gatcaagaaa ttaaacttca aaaagcagtt ttagccaaag aaattgctat taaccaagct
     1141 ttattgcgtg aaatagagca gggcgaagta gaaaaaccaa aagatttcac cttgccgcca
     1201 ttagattttt tagctaatcc aaaagaacac aaacaagaaa tcaatgaaag tgaaatagat
     1261 aaaaaaattt ataatcttct tgaaaaattg cgtcgtttta aaataggcgg cgatgttata
     1321 agcacttatg ttggtcctgt ggtaactact tttgaatttc gtcctagtgc agatgtgaaa
     1381 gtaagtcgta ttttaaattt acaagatgat ttaactatgg ctttaatggc aaaatcaatc
     1441 cgtattcaag ctccaatacc aggaaaagat gttgtaggta tagaagttcc aaatgatgaa
     1501 attcaaacca tttatttaag agaaatttta caaagtgaag tttttaaaaa cgctaaaagt
     1561 cctttaacca tagctttagg taaagatata gtaggcaatg cttttgtaac cgatcttaaa
     1621 aaacttccgc atttactcat cgcaggaacg acaggtagtg gtaaaagtgt ggggataaat
     1681 tctatgcttt taagtctttt atatcgcaac tctccaaaaa ccttgcgttt gatgatgata
     1741 gatcctaaga tgcttgaatt tagcatttat aatgacattc ctcatctttt aactcctgtt
     1801 atcacagatc caaaaaaagc agtcaatgcg ctttcaaata tggtagctga aatggaaaga
     1861 cgctatcgct taatggctga tgcaaaaacc aaaaatatag aaaattacaa tgaaaaaatg
     1921 aaagaattag gcggagaaga acttcctttt attgtagtaa ttatcgatga acttgctgat
     1981 ttgatgatga ctgcgggtaa agatgtagaa ttttatatag gaagacttgc gcaaatggca
     2041 agagcaagtg gaatccactt gattgtagct acacaacgac cttctgttga tgttgtaaca
     2101 ggactaatta aagcgaattt accaagtaga atttcttata aagtagggca aaaaattgac
     2161 tctaaagtta ttttagatgc tatgggtgct gaaagtttac ttggaagagg ggattgttta
     2221 tttactcctc ctggaacaag ctctatagtg cgtttgcatg cgccttttgc aagcgaattt
     2281 gaaatagaaa aaatcgtgga ttttctaaag gatcaacaaa gcgtagaata tgatgaaagc
     2341 tttttaaagg atcaacaaag cgtaggtgtt acaacaaatg aaagctttga tggggaagta
     2401 gatgagcttt atgaagaagc taaaagagta atcttagaag atggaaaaac aagcatttct
     2461 tatttacaac gccgtttaaa aatcggctat aaccgctctg caaatattat tgaacaactt
     2521 acgcaaaacg ggattttaag cgaacctgat gccaaaggac aaagggaaat cttgtaagat
     2581 ttttcttgtg tttttgatat ataaaactga ttacaaaaga agaaatttaa aaggtaaaag
     2641 ccccgtaaaa agggcttaaa aattatttat ctctaagatt taattcagta attaacttac
     2701 tataagaatt ataatctttt cttttaagat aagataaaag tctttttctt tgacctacaa
     2761 gttttagaag tcctaatctt gatgaaaagt cttttttgta gatttttaaa tgttctgtaa
     2821 gttctgcaat tcttgcagtt aaaagagcta cttgaacttc tgttgaacca gtatcacctg
     2881 gttttttagc gaatttcgca actatttctg cttttttggc cgaatccaaa gccatgatag
     2941 acctcc
//
LOCUS       DARGED010000142         2885 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.143, whole genome shotgun sequence.
ACCESSION   DARGED010000142 DARGED010000000
VERSION     DARGED010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.143"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            166..396
                     /locus_tag="SFZ84_001604"
     CDS             166..396
                     /locus_tag="SFZ84_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203689.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            386..628
                     /locus_tag="SFZ84_001605"
     CDS             386..628
                     /locus_tag="SFZ84_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203690.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            622..1062
                     /locus_tag="SFZ84_001606"
                     /pseudo
     CDS             622..1062
                     /locus_tag="SFZ84_001606"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
     gene            1044..>2885
                     /locus_tag="SFZ84_001607"
     CDS             1044..>2885
                     /locus_tag="SFZ84_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG8203691.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITKYFLTPLQLELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLECFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNILKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPI"
BASE COUNT         1087 a          332 c          484 g          982 t
ORIGIN      
        1 aagttctaac atttttctac tttattttta tttttgaaaa aattttaaaa gaaaatgctt
       61 taattaaaaa ttaattgaca ataaaaacct aaatttaaat ttttttctgc tacaatatca
      121 aataatattt tccataaatt acaaattttt taagaaggca aaaatatgtt tgatgaaaaa
      181 ataatcaata ctatgacaga taaagtaaat gaattaattg aaaagtataa cgaagtttgc
      241 gaagccaatg aggctttaag aaatgagctt gtaagcgtta aagcacaaaa tgaagcaaaa
      301 agtaatcaaa tcatgcgttt agaagaagaa cttaaatctc gcaatataga aagcgaagat
      361 atttataaga aaatagaggc tgttcttggc agataatcta aaacaagtca ttgttaatgt
      421 taatgcaaaa gatttcattg ttaagtgcag tgaagaattt gcaaattttt tagaagatga
      481 tatcgctttg atttcagggg gtactaaaaa aatagaactt aaacgctttg tagatgcgtt
      541 tgttaaaaaa agttatgaaa attatattct agaaagagaa cttaagaaac taataaaagc
      601 aatcaatgaa gaactcccga caaaatgaat aaagctttta ctctgcttga gcttgttttt
      661 gtgattttga ttttgggaat tttgtcaagc ttatctttat cttttatcaa tactacaaaa
      721 gatgaggtta aaattttaaa attaaaaatg gactatgaaa tgctaagctc agctcttgct
      781 ttaatgcgta gtcaaatgag acttaaaaat ttaaattttc cagaaatttt agataatgcg
      841 caaaacaatc aagccaaaga aaaactcttt tattgtttaa atgattgtga ttattctttg
      901 cttgatacac ctatttattc tgattttaaa tcttggataa aaataggtaa aaatcactat
      961 agatttgcat taaatgctaa agagatggtt gaatttattt atgattctaa agaaggtttg
     1021 ttaaaatgta taggaagttc tagatgcaaa gatctgatat aagatattat gaacttgcaa
     1081 tttgtggttt gtatttggat aatttaactt ttcatagttt tgatgaaatc aaacctttaa
     1141 cacaagtatt agtggattta aaatctaaaa aaaatcttaa agccatcgta cttaaagaat
     1201 gtcaaaaacc tgattttaaa actatagaaa ttaaagaaat tacaaagtat tttctaactc
     1261 ctttgcaact tgaattggca aattttattg tttattatta tgcttcaaaa cttggttttg
     1321 ttttgggttt ttttgaaact agtcctaagt atgaatgtca aaaaatgttt tttaaagata
     1381 cccctaagct aagcaatcaa caacaaaatg ccttaagttt tcttcaaaaa gaaaataatt
     1441 ctttgctttt tgctgacaca ggtagtggta agactgaaat ttatatttct ttaataaaag
     1501 agtgtttaga acagggtaag caagctttac ttttgatgcc agaaatcgca cttactccac
     1561 aaatgcaaaa gcgtttagaa gtatatttta aggataattt tttcctgtgg cattctaaaa
     1621 tttcaaagaa aaaaaagcaa gaatatttag agtgtttttg caagggagaa gtgcttttag
     1681 tagcgggtgc aagatcggct ttgtttttac cttttagaaa tttaggactt attgtagtag
     1741 atgaagaaca cgataattct tataaggctt ctaaccagcc ttttatcaat gcaagagatt
     1801 tagcactttt tttgggtcaa aaaaataata ttaaagtggt tttaggttct gcaaccccat
     1861 ctttaacgag cttttataaa caaaaaagtt ttagactaaa aggaactttt tttgagagta
     1921 aaaaacattt tttatatgat gaaaatgagc tcggtataac acctatgctt ttaagtgaat
     1981 tagaaaaaag tttaaaacat caaaaacaag ctatagtgtt tttacctaca agggctaatt
     2041 ttaggcaaat catttgcaag gattgtggag aaacgataaa atgtcctttt tgttctattg
     2101 ctatgagtat gcataaaaag aaaaatattt taaaatgtca ttattgtaat tatacttctt
     2161 taatagagca aaattgtcca agttgcaaag gagaaatgtt agaagctaga aaaatgggga
     2221 ctgctgaact tttagagctt ttgcaaaatg ctttgccttt agcaaaaata gcaaaatttg
     2281 atagcgatga aatcacaagc gttaaaaagc ttaatactat tttaaaaaac tttaatgaaa
     2341 ataagatcga tatacttatt ggcacttcta tgcttgctaa aggacatgat tatcatagtg
     2401 tggatttgag tgtgatttta gggcttgatg aatatttgtt gcgtcctagt tttagagcga
     2461 gtgaagaaac tttagcttta gctatgcaag ttgcaggcag ggcagggcgt aaaggcgaag
     2521 caagagtact tttgcaaaca aaaaatagag ctttttttga aaggtatata gagaattatg
     2581 atgctttttt aaaagatgag ttagaaaata gaaaagatct ttacccccca tttaaacgcc
     2641 ttttaagagt tcttatagaa gataaagatc aaaaaagtgc acaaaaactt tgtgaaaaat
     2701 ttgcttctca atttagaaat atcaaacagg tagaattggt aggctatgga atttgtggag
     2761 ttgaaatgct gtatggaaaa tatcgttttt atttgttgct tagaagtgaa aatcataaag
     2821 ctttagtggc aattgaaaat tatattttgc aatttaaaaa tgcaagtgcg gatattgatc
     2881 ctatt
//
LOCUS       DARGED010000143         2874 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.144, whole genome shotgun sequence.
ACCESSION   DARGED010000143 DARGED010000000
VERSION     DARGED010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.144"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            68..1474
                     /gene="aspA"
                     /locus_tag="SFZ84_001608"
     CDS             68..1474
                     /gene="aspA"
                     /locus_tag="SFZ84_001608"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG8203692.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1491..2828
                     /locus_tag="SFZ84_001609"
     CDS             1491..2828
                     /locus_tag="SFZ84_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8203693.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
BASE COUNT          896 a          407 c          592 g          979 t
ORIGIN      
        1 cattatttta tgatttaaat caaaaatttt tgattttaaa ttaaaatact tttatgaaag
       61 gttcaaaatg ggaacaagaa aagaacatga ttttattggg gaattagaaa tctctgatga
      121 ggtttattat ggagtgcaaa cttttagagc tgttgaaaat tttgatattt ctcatgatag
      181 attaaaagat tttcctcgct ttgttagagc tttggctaga gtaaaaaaag ctgcagctat
      241 ggcaaatcat gaattaggtc ttttggataa aaatatccaa gatgcgatta ttaaagcgtg
      301 cgataaaatt ttagaaggcg ggtattatga tcaatttgta gtagatatga tccaaggagg
      361 tgctggaaca agtacaaata tgaatgctaa tgaagttata gcgaacatag gacttgaact
      421 tatgggtcat aaaaaaggtg aataccaata tcttcatcca aatgatcatg ttaatttaag
      481 ccaaagtact aatgatgctt atcctacggc tttacacctt gccttacatg attatttaag
      541 tgatttggca aaagctatgg aacatctaaa aaaagcttat gagagaaaag ctgaagaatt
      601 taaagatgtt cttaaaatgg gtagaaccca actgcaagat gctgtaccta tgactttagg
      661 tcgtgaattt aaaacttttg ccgtaatgat aggtgaagat atacaaagag tattagaagc
      721 tagaaaattg attttagaga tcaatttggg tggaactgct attggaacgg gaattaattc
      781 tcatcctgat tatccgaagg ttgtagaaag aaaaataaga gaagtgacag gttttgaata
      841 tactgtggct gaggatttga tcgaggcgac tcaagatacg ggagcttatg tacaaatttc
      901 aggtgtttta aaacgtgttg caacaaaact ttctaaagta tgtaatgact taagactttt
      961 aagtagtggt ccaaaatgtg gtcttaatga gattaatctt ccaaaaatgc aaccaggtag
     1021 ttctatcatg ccaggtaagg taaatcctgt tattcctgaa gtagttaatc aagtttgtta
     1081 ttttgttatt ggagcagatg taactgtaac ttttgcttgt gagggtggac aattgcaact
     1141 taatgttttt gaaccagttg tagcatatag cttatttaat tctgttgtaa tgctagaaaa
     1201 agcaatgtat actttagctg ataaatgtat agatggtatt accgcaaatg aaaaaatttg
     1261 ttcagacttt gtctataatt cagtaggtat agtaacagct ttaaatcctt atattggtta
     1321 tgaaaattca gcttctatag ctaaagaggc aatgaacact ggaaaaagag tggctgatat
     1381 tgcgcttgaa agagggcttt taagtaaaga acaaattgat gaaattttaa ctccatcaaa
     1441 tatgctaaac cctcacatgg aagctaaaaa atagcatttt aggatttaat atggatataa
     1501 tgataatttt gcaagtaatc gtccttcttg gggcgatttt tatcggtatt cgcctaggcg
     1561 gcattgctat aggttatgct ggaggattag gtgtagttat actaggactt gttttaggta
     1621 tgaaacctgg taatattcct tgggatgtta ttttaattat tgctgcagct attgcagcaa
     1681 tttctgctat gcaacaagca ggtggacttg attatatggt aagggtgaca gaaaaaattt
     1741 taagatcaag ccctaaattt ataaattatt tagctccagc ttgtggatgg ttgcttacaa
     1801 tcttagcagg aacaggaaat gcagtatttt ctttaatgcc tgttgtagtt gatgttgcaa
     1861 aatctcaaaa cataaaacct agtgttccac tttcattaat ggttgtttct tcgcaaattg
     1921 gaatcactgc ttctcctgta agtgcagctg tggtttatat gagcggagtt ttagagccac
     1981 ttggatggaa ttatccaact ttaattggaa tttggattag cacaactttt gtagcttgta
     2041 tgcttgcagc ttttatagtg agtttaatca ctcctatgga tttgagtaag gatagtgttt
     2101 atcaagaacg attaaaagca ggacttgtaa aggatgcagg agctgttttg catggcgaag
     2161 ataaaccagg tgctaaactt tcagtggtaa ttttcttgat cactgttttg gcagttgtac
     2221 tttatgcaac cgcaatttca agtaatatta aatggattga tcctgttgtg gttccaagag
     2281 atgcagctat tatgagcttt ttgcttactg cagcaacttt gatcacttgg ctttgtaaag
     2341 ttgaaccagg taaaattctt gacactagtg tatttaaaag cggtatgact gcttgtgttt
     2401 gtgtttttgg tgtagcatgg cttggaaata cttttgttgc aggacacgaa gcttctatca
     2461 aagaagtagc aggcgactgg gttaaacaaa cccctgctat gttagcagtt gcatttttct
     2521 ttgcaagtat gcttttatat tctcaagcag caaccgcaaa ggccattgta cctgtaatta
     2581 tcaccgcttt aggaatttca gcagcaaatc cgcatgattc ttatatgctt gtagcttgtt
     2641 ttgcagcagt ttcggcactt tttgtgcttc caacttatcc aaccttgctt ggtgctgtgc
     2701 aaatggatga tacaggaacg actagaattg gtaaatttat atttaatcac tctttcttta
     2761 taccaggagt tttagctatt gcaattgctg tagcattagg ctttgtatta gctcctatgc
     2821 ttatttaaat caaaccctag gtttttctct cctagggtta aaattttttc atta
//
LOCUS       DARGED010000144         2804 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.145, whole genome shotgun sequence.
ACCESSION   DARGED010000144 DARGED010000000
VERSION     DARGED010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2804
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.145"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..911
                     /locus_tag="SFZ84_001610"
     CDS             <1..911
                     /locus_tag="SFZ84_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203694.1"
                     /translation="AKQIHLISKVKKQLAIDFSIKMSKDLSVDILKSLVGSFIDTLLP
                     TNYERLKILYEKLMYEKFTYNYDFPLAVKKEEYITYPLLINSRFMSFDLSEFIFGSLL
                     CTGGLNYYPSIACATTSSEAREFALKRLLSYIILDEKRSAFKEDKINEGKYILNDKEF
                     FEKNNIELRNCNIYKLEHFQRKEEYKTQHPVIKQHPILAYNDAIQILYEYANGIYNTT
                     QDEKGKFIEDRQKARRLMENLEAIGQHNLEVMYRGINEEYVDNERNRRKEKEDFNDIN
                     KIQDYSNKFIGRLATTIIMEDGLYIG"
     gene            923..2224
                     /locus_tag="SFZ84_001611"
     CDS             923..2224
                     /locus_tag="SFZ84_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203695.1"
                     /translation="MSGNKDIYEIYTSNGLILEVDKNTNQIIFDKRKDGREVGKYTQE
                     YSKALFEADRILRNSPYKDYKPQYLDPEFHTGEKSTLLEFKDWQSIYLKDPIKGSIAP
                     WTKAEKAYYKSLKTKKERYKYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYR
                     IVDDNKHNLRSSLFHNEWGMAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGS
                     SILDKPHLLGAVYGYADIAVGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEI
                     MGVDWVIDYNKYRIARDEFGSMYKALRSDIVEGKIKDPRDIDSTYESRREFDRHRGGY
                     YNGMVNGYGTDTPNDWSEERAQLFNDTLILHAKLAALTPPQGYPNAPYYFTPENLEWY
                     YKRHKLDRLLDPRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
     gene            2247..>2804
                     /locus_tag="SFZ84_001612"
     CDS             2247..>2804
                     /locus_tag="SFZ84_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203696.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSDTHYKNPLLQYA
                     ITQKQEQENIVYALKNNENLNASFANLNALKLALEEKNFYLNFIDLNSKESLLSFYNQ
                     IISNNHFRNYFYIKNNQFFIKKDIKN"
BASE COUNT         1145 a          316 c          453 g          890 t
ORIGIN      
        1 aagctaagca aattcatttg atatcaaaag taaaaaaaca attagctatt gatttttcta
       61 ttaaaatgag taaagacttg agcgtggata tattaaaaag tttagtagga tcttttattg
      121 atacactttt gcctacaaat tatgaaagat tgaaaatttt atatgaaaaa ctaatgtatg
      181 aaaaatttac ttacaattat gattttcctt tagctgtaaa aaaagaagaa tatataacct
      241 atcctttatt gataaattct agatttatga gttttgattt atctgagttt atttttggtt
      301 ctttattatg cacgggtggg cttaattatt atcctagtat tgcttgtgct acaacttcaa
      361 gtgaagctag ggaatttgcc ttaaaaagac ttttatctta tattatttta gatgaaaaaa
      421 gaagtgcttt taaggaagat aaaatcaatg aaggcaaata tatcttaaat gataaggaat
      481 tttttgaaaa aaacaatata gaacttagaa attgtaatat atataagcta gagcattttc
      541 aaagaaaaga agagtataaa acacaacacc cagtgataaa acaacaccct atcttagctt
      601 ataatgatgc tatacaaatt ttatatgaat atgcaaatgg gatttataat accactcaag
      661 atgaaaaagg taagttcata gaagataggc aaaaggcaag aagattgatg gaaaatttag
      721 aagctatagg acaacataat ttggaagtga tgtatagggg gataaatgaa gaatatgttg
      781 ataatgaaag aaatagaaga aaagaaaaag aagattttaa tgatattaat aaaatacaag
      841 attattctaa taagtttata ggcagactag ccactactat aatcatggaa gatggtttat
      901 atataggatg aaaggataaa taatgagcgg taataaagat atttacgaga tttatacttc
      961 taatggactt atattagaag ttgataaaaa tacaaatcaa attatatttg ataaaagaaa
     1021 agatgggcgt gaagtaggca aatacaccca agaatattcc aaagctttgt ttgaagctga
     1081 tcgtatatta agaaactccc cctacaaaga ctataaaccc caatacctag atcctgaatt
     1141 tcacacaggg gagaaatcta ctttacttga atttaaagat tggcaaagca tatatttaaa
     1201 agatcccatt aaaggaagca tagctccttg gactaaagca gaaaaagctt attataaatc
     1261 tttaaaaact aaaaaagaaa gatataaata tttagttata agaagtggta taagaagtgt
     1321 tgttatagat ataccttatg aagctatagg agctgtagat gaaaaaggaa atgtagatcc
     1381 taaatatgaa aaattatata gaatagtaga tgataataaa cataatctaa gatcaagttt
     1441 atttcataat gaatggggta tggcagcagg aatattaggt gattataaat acctagctaa
     1501 tgatatgttt caaaatggtt ttaatgcaag atttatacaa gctactatac tttatataca
     1561 actaagtgga ggaagtagta tattagataa acctcattta ttaggtgctg tttatggtta
     1621 tgcagatatt gctgtaggaa gtggtttagt aggagtgcat aaaaatcctt taagagaaca
     1681 agagattaaa accttagcta agactttaaa acctgatgaa tttggtatgc ttccttttat
     1741 agatgagatt atgggagtag attgggtgat tgattataat aaatatagaa ttgctcgcga
     1801 tgaatttgga agtatgtata aagccttaag aagtgatata gttgagggca agataaaaga
     1861 tccaagggat atagattcta cttatgaaag cagaagagaa tttgatcgcc ataggggagg
     1921 gtattataat ggcatggtaa atggctatgg aacagataca cctaatgatt ggagtgaaga
     1981 aagagctcaa ctttttaatg atactttaat attacatgcc aaattagcag ccctcactcc
     2041 tcctcaaggc tatcctaatg caccttatta ttttacccct gaaaatctag aatggtatta
     2101 taaaagacat aagcttgata gacttcttga tccaagaatt cctgctatat atagatataa
     2161 ttttccgcaa gaacttcgag ctaagataag agcttatgct aaagagcata atataaaaga
     2221 gtaaaccaca aaagaaagga aaaacaatgc aaaaaatact tcaaatcgat ttagaaaaaa
     2281 gaaaagcttt agagaatttc aaaaatctag ctttattagg attaggtgga acaatgcttt
     2341 taaatttaaa agaacaagct ttggatttta gtcaagaatt aacttatata aatacttatg
     2401 ataagtattt aaatttaaag cttgattctt tttatatccc ttctacactt ttatctttgc
     2461 ttcaattaac taagaaaagc aaagaagctt tttatatcaa tgttttaatc aatagcgata
     2521 cacattataa aaatccttta ttacaatatg ctattaccca aaaacaagaa caagaaaata
     2581 tcgtttatgc tttaaaaaat aatgaaaatc ttaatgcttc ttttgcaaat cttaatgctt
     2641 taaaattagc cttagaagaa aagaattttt atcttaattt tatagactta aacagcaaag
     2701 aaagtctttt aagtttttat aatcaaataa taagcaataa tcattttaga aattattttt
     2761 atataaaaaa taatcaattt tttattaaaa aagatataaa aaat
//
LOCUS       DARGED010000145         2715 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.146, whole genome shotgun sequence.
ACCESSION   DARGED010000145 DARGED010000000
VERSION     DARGED010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2715
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.146"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(98..973)
                     /gene="zupT"
                     /locus_tag="SFZ84_001613"
     CDS             complement(98..973)
                     /gene="zupT"
                     /locus_tag="SFZ84_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEG8203697.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNYYNSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMMIMALSLNLLEY"
     gene            1169..>2715
                     /locus_tag="SFZ84_001614"
     CDS             1169..>2715
                     /locus_tag="SFZ84_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8203698.1"
                     /translation="MQKMNSGKSVGVSVKLTLWVGILVVLILAITSTVSYFDAKNHTY
                     ELLKENQLKTMDDVKVTFENYSKSKQKAIEVLAYESAKKLEDENISLLLDSFKKAFDF
                     DIVFIAFDKNNKMLLSNGTILDKKSNFDITKQIWYQEAKNNKGITITQPYKSPIDQEI
                     GITYVFPIYKNNQLIAFVGGDYNLDKFSKDVLSLGHSSTTYAAVYDSEGRIIFHEVLD
                     RILTKNTLSVNIANAIKENPEYIDPNKRDILFPVFDDKGIKYETMCDTSSNGLYRICA
                     VTLDSNYTSAVNSILMKQAIVGIIAIIIALILIRFLISRSLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNRLLDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDAN
                     GAVEVTTNALGQEIIKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAA
                     ALEEITSS"
BASE COUNT         1045 a          427 c          391 g          852 t
ORIGIN      
        1 taatcattca agccctttct ttgggcttga attttaaaaa tttatgctat gattttgtat
       61 attttataaa taaacactta aaaacaaaaa ataattttca atattcaagt aaatttaaac
      121 ttaaagccat tatcatcatt cctgcgataa gtccatataa actatcatga gccttatcat
      181 aagtttttgc agcgggcaaa agctcatcaa gagatataaa aaccataatt cctgcaatca
      241 cagcaaaact tatagctaaa gtaagatcgc ctataaaagg caataaaatc aaagctccaa
      301 caaaagcacc caaaggctct gcaaaacccg aaagagctga ataaataaaa gcttttttct
      361 tatctcctgt agcatggtaa attggcaaac tcacagccaa accttctggg atattgtgta
      421 tagccacagc tatagctata gcaattccta aagtaagatt atcaagactt gaaataaaag
      481 tagcaaaacc ttctgggaaa ttatgtatag caatagccaa agctgtaaaa atccctgtac
      541 gttttaaagc tttagtattg atctgatgca acttttctcc aggatgaaat ttcggaggat
      601 tttgtccttt ttggggcaag ggacaaattt ttaactcgct taaatcctct ttaggctcgt
      661 gaggattgac atcttcgggg attaatttat caatcaataa agatattaaa attccaccaa
      721 aaaaacaagc caatcctaaa agttcggccc aatgtgaatt ataataattt ttaaaatctt
      781 taagagcagt gggtaaaatt tccataaaag aaatgtatat cattactcca gctgaaaaac
      841 caagccctaa agaaagcacc cttaaatcat cttttctaga aaaaaaggct attatagaac
      901 ctatagccgt agaaaaacct gcaaaaagag tcaatagcat tgcgataaaa atttgttcaa
      961 atgtaaattg catttattaa ttcttaatat ataattatag tgttttataa ttatatatat
     1021 gtaaaaagtt aataaatggc aaaaagtata aaaaatacta aaatttttaa gaatatttat
     1081 gtaaaaaagt tcatttttat gcatttcttt ctctatattt ctgctataat aataatttta
     1141 tttccaaaat ataaatatag gagttataat gcaaaaaatg aattcaggca aatccgttgg
     1201 agtttcagtc aaacttacgc tgtgggttgg aattttagtt gtattaattt tagcaatcac
     1261 aagtaccgtt agttactttg atgccaaaaa tcacacatat gaattgctaa aagaaaatca
     1321 attaaaaact atggatgatg ttaaagtaac ttttgaaaac tattccaaaa gcaagcaaaa
     1381 agctatagag gttctagcat atgaaagtgc taaaaaatta gaagatgaaa atatttcact
     1441 gcttctagat tcttttaaga aggcgtttga ttttgatatt gtttttattg cgtttgataa
     1501 aaacaacaaa atgcttttgt caaatggaac aattttagat aaaaaatcaa attttgacat
     1561 tacaaaacaa atttggtatc aagaagcaaa aaataacaaa ggcatcacaa taactcaacc
     1621 atataaatcc cctatagatc aagagattgg tataacttat gttttcccta tttataaaaa
     1681 taatcaactt atagctttcg ttggaggcga ttacaatcta gataaatttt ccaaagatgt
     1741 attatcttta ggacactcat caactactta tgctgctgtt tatgactctg aaggaagaat
     1801 tatttttcac gaagtgcttg atagaatttt aacaaaaaac actttaagcg ttaatattgc
     1861 taacgccata aaagaaaacc ctgaatatat agatccaaat aagagagata ttctttttcc
     1921 tgtatttgat gataaaggta tcaaatatga aacaatgtgc gatacaagtt ccaatggatt
     1981 atatcgtatt tgtgctgtaa ctttagatag taactatact tccgctgtta attccatttt
     2041 aatgaaacaa gctatagtcg gtattatagc tataatcata gctttaatct tgattagatt
     2101 tttaatcagc agaagcctct ccccacttgc agctatccaa acaggtttaa cttcattctt
     2161 tgattttatc aactataaaa caaaaaatgt ttctactata gaagtaaaaa gcaatgatga
     2221 atttggacaa atctcaaatg ctatcaatga aaacattctt gctactaaaa gaggcttaga
     2281 acaagacaat caagccgtta aagaatcagt tcaaaccgta tcagttgtag aaggtggtaa
     2341 tttaacagca agaatcactg ctaatccaag aaacccacaa cttattgaac ttaaaaatgt
     2401 tctaaataga cttcttgatg ctttacaagc tagagtaggt tctgatatga atgaaattca
     2461 aagagtattt aatagctata aatctcttga ctttactact gaagtaaaag atgccaatgg
     2521 agctgtagag gtaactacta atgcactagg acaagaaatc attaaaatgc taaaacaaag
     2581 ctcagacttt gctaatgctt tagctaatga aagtggaaaa ttacaaactg ctgttcaaag
     2641 cttaaccact tcttcaaatt ctcaagctca atctttagaa gaaactgcag cagctttaga
     2701 agagatcact tcttc
//
LOCUS       DARGED010000146         2661 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.147, whole genome shotgun sequence.
ACCESSION   DARGED010000146 DARGED010000000
VERSION     DARGED010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.147"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1113)
                     /locus_tag="SFZ84_001615"
     CDS             complement(<1..1113)
                     /locus_tag="SFZ84_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8203699.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     DEINKNADKTGVRATFTVETRGIAAVRAGATSDDFAINGVTIGKVDYTDGDGNGALVS
                     AINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFINANMKENYGRLSLVK
                     NDGKDILISGTGLSFTGFGANSFISQASVSLRESKGQ"
     gene            complement(1210..>2661)
                     /locus_tag="SFZ84_001616"
     CDS             complement(1210..>2661)
                     /locus_tag="SFZ84_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203700.1"
                     /translation="VYKVVLFDCVAKDLEIQIAMIFDQQSILEYLSLYEMFISSHYYL
                     KYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQNIPSMLESIPFQRILSE
                     RKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGIIPDYVTNLDF
                     TDLAMKFFQNKENLKQSIIALECATHPNIVRSLNAENCMIVLRNKALYQRFNLNDFGY
                     IDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKFSGEENIDKL
                     KVTAYAGKGEVLTHITWNDYRIKLEYLFACNEQKAKFYNATEGGARINFTEELSFKEC
                     CEKLLTKEKPQFELPKSLTKNRSDKLLVKFKEKIQKDQDNAKRFLDDALALKQILENI
                     LSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDETLRGAFAYRGKMIADVLKLHIQD
                     KTHFITAYIKAYHEWLLYFIEKLEQKYKSLSKV"
BASE COUNT          859 a          479 c          367 g          956 t
ORIGIN      
        1 ctgccctttt gattctctta aagaaacaga agcttgagaa ataaaactat ttgcaccaaa
       61 tcctgtaaaa gaaaggcctg ttccgctgat taaaatatcc ttaccatcgt ttttaactaa
      121 agacaagcgg ccataatttt ctttcatatt ggcattgata aaggcacctc caccgatatt
      181 accatcgatt ttaatccctc taccctctct tgaagtaagt aaaagttgtc cattagcatc
      241 gatcgaagct tcaactccag tggtatcttt aaccgaattg attgcagaaa ccaaagcacc
      301 gtttccatca ccatctgtgt aatctacctt acctatagtt accccattga tagcaaagtc
      361 atctgaagta gctcctgctc taactgcagc tatacctcta gtttctactg taaaagtagc
      421 tctaacacct gttttatcag catttttatt gatctcatct gctaaagctc caagtcctgt
      481 tccaactgaa gttgaaatca caactttttg aaactgaaaa tcatctatac cattgtaatt
      541 tttaagagta aattgtactt cgccactaga tgaaattctt cctcctgttt caaagcgtgt
      601 taaacctatc ttagaagatt gagttgctcc tatagtagct tttacagttt gatttgaact
      661 tgcaccgatt tgaaattctt gattgataaa attcccactt aaaagttgtt taccgttaaa
      721 tgaagtagta tttgcgatat tatcaagttc ttccattaaa cggttgatat ctgcttgaag
      781 catggttctt gtttttaaac tttgtccatc ttgagccgct tgagttgcct tagttttgat
      841 tgtatctaag attttaagtt gctcatccat agccttatca gcagtttgta agatacctaa
      901 agcatcatta ccattagata tagcttgacc taaagtatta gcttgagatc ttaaactatc
      961 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
     1021 tctgcttaaa gaagcatcta aacttttact atttaaatca gcgtttgctt ttgcatttaa
     1081 agctgcaaca ttggtgttaa tacgaaatcc cattttaaat ccttttaaaa aaattcaagc
     1141 tcatccatga acttgttaaa tgctatatcg tgcaatcaaa aaaatatttt atactttagc
     1201 aataaaattt catacttttg acaaagactt gtatttttgt tctaactttt ctataaaata
     1261 aagcaaccat tcatggtaag ctttaatata agctgtgatg aaatgcgttt tatcttgtat
     1321 atgaagtttc aatacatcag caatcatttt tccacgataa gcaaaggctc ctcttaaagt
     1381 ttcatcctgt ataaactcat cttcatctaa agagtgattg aaattttcta tattttgata
     1441 aactttttct aaaaattcca aaggtaaaat aaaatcttta ctgagtatat tttctaaaat
     1501 ttgttttaaa gctaaagcat cgtctaaaaa tcttttagca ttatcttgat ctttttgtat
     1561 tttttctttg aatttaacta ggagtttatc acttctattt ttagttaaac tttttggaag
     1621 ttcaaattga ggtttttctt ttgtaaggag tttttcacaa cattctttaa aggaaagttc
     1681 ttcagtgaaa ttaatccttg ctccaccttc agtagcattg taaaactttg ctttttgttc
     1741 attgcaagca aaaagatatt caagttttat acgataatca ttccaggtta tatgcgttaa
     1801 aacttcacct ttgcctgcat aggcggtgac tttaagttta tctatatttt cttcaccact
     1861 aaatttctct ccaaaatcaa aaccttttga gtgtgaattt ccttcttcat caaaggctaa
     1921 atcttgtcct atcatgatga tatttttaaa tcctaaagcc aaagctaagg tataagaaaa
     1981 atgacttaca tgagtgcctg tatcgatata gccaaagtca ttaagattga agcgttgata
     2041 aagggcttta tttcttaaaa caatcataca attttcagca tttaaactac gcacgatatt
     2101 aggatgcgta gcacactcaa gagcaatgat gctttgtttt aaattttctt tattttgaaa
     2161 aaatttcatt gctagatcag taaaatctaa attcgtaaca taatcaggta ttatgccttc
     2221 tttttcaagc atgcttaaag ccccatcagc acaaaagatc actgctttat cttgataagc
     2281 tttaagtaaa ggaagttgtt tagctaaact aggtcctgca gaaactacta tagcattttc
     2341 aaatttgttt tttctttcac ttaagattct ttgaaaagga atgctttcaa gcatagaagg
     2401 gatgttttgt aaaaactgtc catgtgttag caaaggtaaa aaacaagtaa tatctgcatt
     2461 ccttattgct acacttgcac ttttaataca aagttcattt aaagataaaa tagaagtttc
     2521 atagtattta agataataat gcgagctaat aaacatttca tataaactta aatactctaa
     2581 aatactttgc tgatcaaaaa tcatagcaat ttgaatttct aaatcctttg caacacagtc
     2641 aaataataca accttataaa c
//
LOCUS       DARGED010000147         2630 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.148, whole genome shotgun sequence.
ACCESSION   DARGED010000147 DARGED010000000
VERSION     DARGED010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.148"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            134..580
                     /gene="tssJ"
                     /locus_tag="SFZ84_001617"
     CDS             134..580
                     /gene="tssJ"
                     /locus_tag="SFZ84_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HEG8203701.1"
                     /translation="MFCKKSLFFLLPLFFCACSSVVSVKINNVENSNLNNRHDDVPVT
                     AIVYQLKDIKKFEEASDIDLATREEGVLGKDKLDSIKTQIAPKDNIIAVKVDEEEVPY
                     VGILVLFANNTKKTTKIWAKTEDANGFGKNKYLKFEISKEGIKRIK"
     gene            590..1987
                     /gene="tssK"
                     /locus_tag="SFZ84_001618"
     CDS             590..1987
                     /gene="tssK"
                     /locus_tag="SFZ84_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HEG8203702.1"
                     /translation="MANKLKVAWFDGLNIGQTHFEQQERFFNRNIDLKTINIYSNLYG
                     IIDLEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQDLLPEPIEINYESLIDSVVVLK
                     IPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIEDEYELENLTFTQ
                     EKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDFIPTCLNISKIS
                     TIRSFLEEIIFSINQHKKVLSNVFKGIDQTKNTLDFSTFLSLNLLKKWYLIFSHLSKK
                     DKIHPEFLYEKFLEFQGELAAFSNEESFLDFIPYKHDNLYNTFLNMMNNLRLLFSKIT
                     SPKYFIAKTSINGNGFYDFIFDNSGILEESEIYFAIRADVTTEYLLNNFKIQSKIHTQ
                     SKIKNIVATQLEGLNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDFKNESIISMYLT
                     NNIKNPDIIMWAVFQ"
     gene            1984..>2630
                     /gene="icmH"
                     /locus_tag="SFZ84_001619"
     CDS             1984..>2630
                     /gene="icmH"
                     /locus_tag="SFZ84_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HEG8203703.1"
                     /translation="MKEINEEKKALSLLLDSDFDGLKNNKIIDYSLELLLLSYRLSKI
                     SSMDTSNINQLRETLINKILDITAKLSMCKEYDEKEIIKFKYCLCVFIDESLMKNELF
                     INFWAHNTLTVRLFDETLGGNNFYDIASSWINNPFKFKDFLEFIYACLILGYKGKYNE
                     TKDRDEKIIHFCNNIATSLKPVYKIEEELAFNKAYKTGLKENIWQKFIRLYFKKL"
BASE COUNT         1029 a          290 c          380 g          931 t
ORIGIN      
        1 aaatacattt aattcctcca aaaatttgcc tcattataat taaattttaa aaaatattat
       61 gttaattttt taaaaaattt actcaattaa tcataaatta tatattctaa gatagaaagg
      121 atactttagt ttcatgtttt gtaaaaaaag cttatttttt ttattgccat tattcttttg
      181 cgcttgctca agtgttgtta gtgttaagat aaataatgta gagaattcca atcttaataa
      241 tagacatgat gatgttcctg ttacggctat tgtatatcaa cttaaggata ttaaaaaatt
      301 tgaagaagca agtgatatag atttggctac tagagaagag ggggtgctag gcaaggataa
      361 acttgattct attaaaacgc aaattgcacc taaagacaat attatcgcgg ttaaagtaga
      421 tgaagaagag gttccttatg taggcattct tgtattattt gcaaataata caaaaaaaac
      481 aacaaaaata tgggcaaaga ccgaagatgc aaatgggttt gggaagaata agtatttaaa
      541 atttgaaata tccaaagaag gtatcaaaag aattaaatag gaataatata tggcaaataa
      601 attaaaagtt gcttggtttg atggacttaa tattggacaa acccattttg agcagcaaga
      661 aagatttttt aatagaaata tagatcttaa aactataaat atatatagta atttatatgg
      721 aataatagac ttggaatttt ctcaagagat gttattgcaa ggaaaaattg cactttctaa
      781 aatttcaggt atcgcacaag atggaagcat ttttaatgca cctgagcaag atttgttgcc
      841 tgagcctatt gaaatcaatt atgaatcttt aattgattca gttgtggtat taaaaattcc
      901 tatcggagtt actgatattg ctgatttatc tttaagaaat acttttccaa attcaaagtt
      961 tatatgtctt agaaatagta ttgctttaag aaattatgat gattcaaaat ctaatgtaat
     1021 ggacaaaatt gaagatgagt acgaacttga aaatctgact tttacacaag agaaaaaaga
     1081 tttacttctt gctagtttaa gattaaaact tggcatttta ggtaattcaa ctcctgatga
     1141 acttgaatta ccaattgcaa aaattaaaaa tattgatatc aataaaaaaa ttgaattaga
     1201 aagtgatttt atacccactt gcttaaatat cagcaaaata tctaccataa gatccttttt
     1261 ggaagaaatt attttttcaa tcaatcaaca taaaaaagtt ctatctaatg tttttaaagg
     1321 aatcgatcaa acaaaaaata cattggattt tagcactttt ttatccctta atcttttaaa
     1381 aaaatggtat ttaatatttt cacatctatc aaaaaaagat aaaatacatc ctgaattttt
     1441 atacgaaaaa tttttagaat ttcaaggaga gcttgcagct tttagtaacg aagaatcttt
     1501 tttagatttt attccttata aacacgataa tctttataat acttttttaa atatgatgaa
     1561 taatctaaga ttgttatttt ctaaaatcac aagccctaaa tattttatag ctaagaccag
     1621 tattaacggc aatggttttt atgattttat ttttgataat tcgggaattt tagaagaaag
     1681 tgaaatttat ttcgcaatcc gtgcagatgt tactacagaa tatctactta ataattttaa
     1741 aattcaaagc aagatacata ctcaaagtaa aattaaaaat atagtcgcaa ctcagcttga
     1801 gggcttaaat gtagatcaag tacctaatgt tccatctagc attccttatt taaatggtta
     1861 tgtttattat aaattagata aaagagatca actgtttaaa gattttaaaa atgaaagtat
     1921 cattagtatg tacttgacca acaatataaa aaaccctgat attataatgt gggcggtatt
     1981 tcaatgaaag aaataaatga agaaaaaaag gcattaagct tacttcttga ttcagatttt
     2041 gatggtttaa aaaacaataa aattattgat tattctttgg agttgctttt gctttcttat
     2101 agactttcaa aaataagctc tatggataca agtaatatta atcaacttag agaaacattg
     2161 attaataaaa ttttagatat aaccgctaaa ctaagtatgt gtaaagaata tgatgaaaaa
     2221 gaaattatta aattcaaata ttgtctttgt gtctttatag atgaaagctt aatgaaaaat
     2281 gaacttttta ttaatttttg ggctcacaat actctaactg taagattatt tgatgaaacc
     2341 ttaggtggaa ataattttta tgatattgca tcatcttgga ttaataatcc ttttaagttt
     2401 aaagattttt tggaatttat ttatgcttgt ttgattcttg gttataaagg aaaatataat
     2461 gagactaagg atagagatga aaaaataatc catttttgca ataatattgc cacatcttta
     2521 aaaccggttt ataagataga agaagagtta gcttttaata aagcatataa aactggtttg
     2581 aaagaaaata tttggcaaaa atttataaga ttgtatttta aaaaacttat
//
LOCUS       DARGED010000148         2563 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.149, whole genome shotgun sequence.
ACCESSION   DARGED010000148 DARGED010000000
VERSION     DARGED010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.149"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1505
                     /locus_tag="SFZ84_001620"
     CDS             <1..1505
                     /locus_tag="SFZ84_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002879924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8203704.1"
                     /translation="KDDSGEKEKIEEELKDLLDNFENYKLELKKILLGIEYENFYSNY
                     KDIFIGLKEQLGVSIANYNEELLKIEKKLTKKKKDVFTPIKLENTNDFSDEIFLILNK
                     IENLCKENDEYTNKLSTNQDEARKKLRLNEVAKFAKDSDCFAIQDEIQNLKQNINTLE
                     KSIATQNNKIDLLESRIEKYKEKLSNLETSTSNINKYLKSYFGHNMLELKVKKDDKGQ
                     LNGEFEILRNGKQAKNLSEGECSLIAFCYFVASLKDANTKDKNPIIWIDDPISSLDNN
                     HIFFIFSVIENEIVRKNSFEQFFISTHNLDFLKYIKRLKKSKSKQSKNDEKEYDFPQY
                     YFIEKSVKESMETSEVKKLPKCLEKYTTEFNYLFEQIYKFKNIDGINDEDLKTSLVYN
                     FGNNLRKFLEIYLFFKYPNNFESLDKELIERFFNDTYQSDRIDENHQKMVASIINRYQ
                     NEYSHLREILSRGMQPIDIEESKKIAKFILETIKQNDKQQYKALVKSIGK"
     gene            1524..>2563
                     /locus_tag="SFZ84_001621"
     CDS             1524..>2563
                     /locus_tag="SFZ84_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8203705.1"
                     /translation="MTNLPQGWKMETLGEILSSDKYSIKRGPFGSALKKSFFVEKGIR
                     IFEQYNPINNDPHWKRYFISHEKFQELEAFKATEGDLLISCSGTLGKIVELPKDTEMG
                     IINQALLKIRLNNIKILNSYFIYYFNSPIMQEKILESTLGSAIKNIASVKILKQIEIP
                     LPPLKEQERIVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENY
                     KLPQSWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYANGVNNNGLVGYTDKAT
                     IIKPSLTISARGTIGFVCIRKEPYFPIVRLISLIPCENILCLHYLYFCLNFFIAKGEG
                     SSIPQLTIPKFKS"
BASE COUNT         1131 a          263 c          390 g          779 t
ORIGIN      
        1 taaaagatga tagcggagaa aaagaaaaaa ttgaagaaga attaaaagat ttactagata
       61 attttgaaaa ttataaacta gaattaaaaa aaatattgct aggtattgaa tatgaaaatt
      121 tttattctaa ctataaagat atttttattg gcttgaaaga acagctagga gtaagtattg
      181 caaattacaa cgaagagttg ttaaaaatag aaaaaaaatt aacaaaaaag aaaaaagatg
      241 tttttactcc tataaaatta gaaaacacaa atgatttttc agatgagata tttttaatat
      301 taaataaaat tgaaaattta tgcaaagaaa atgatgaata cacaaataaa ttatcaacaa
      361 atcaagatga agcaagaaaa aaactaagac taaatgaagt agcaaaattt gctaaagata
      421 gtgattgttt tgctatacaa gatgaaattc aaaatttaaa acaaaatata aatactttgg
      481 agaaaagtat tgcaacacaa aataacaaaa tagatctttt agaaagtaga atagaaaaat
      541 ataaagaaaa acttagtaat ctagaaactt ctacaagcaa tataaacaaa tatttaaaat
      601 catattttgg acataatatg ctagagttaa aagtaaaaaa agatgacaaa ggacaattaa
      661 atggagaatt tgaaatttta agaaatggca agcaagctaa gaatttaagt gagggtgagt
      721 gtagtttaat tgctttttgt tattttgtgg caagtttaaa agatgcaaac accaaagata
      781 aaaatcctat aatatggata gatgatccta tctctagcct tgataataat catatatttt
      841 ttatattttc tgtgatagag aatgaaatag taagaaaaaa ttcttttgag caatttttta
      901 tatctacgca taatttagat tttttaaaat atataaaaag attaaagaaa agcaaatcca
      961 aacaaagcaa aaatgatgaa aaagagtatg attttccaca atactatttt attgaaaaaa
     1021 gcgtcaaaga aagtatggaa acaagtgaag ttaaaaaact acctaaatgt ttagagaaat
     1081 atacaacaga atttaattat ctttttgagc aaatttataa gtttaaaaat attgatggta
     1141 taaatgatga agatttaaaa acttctcttg tttataattt tggaaataat ttaagaaaat
     1201 ttcttgagat ttatttattt tttaaatatc caaataattt tgagagttta gataaagaat
     1261 taatcgaaag attttttaat gatacatatc aaagtgatag gattgatgaa aatcatcaaa
     1321 aaatggtagc aagtattata aataggtatc aaaatgaata ctcacattta agagagatac
     1381 ttagcagagg aatgcaacct attgatatag aagaaagcaa aaaaatagct aaatttattt
     1441 tagaaacaat aaaacaaaat gataaacaac aatataaagc gttagttaaa agcataggta
     1501 aataaataga aaaaggcaat acaatgacaa atttaccgca gggttggaaa atggaaacac
     1561 ttggtgaaat attatcaagt gataaatact ctataaaaag agggccattt ggaagtgctt
     1621 taaaaaaaag cttttttgta gaaaagggta ttagaatttt tgaacaatat aatcctataa
     1681 acaatgatcc acattggaaa agatatttta tttcgcatga aaaatttcaa gaattagaag
     1741 cgtttaaggc aacagaaggc gacctactaa ttagctgttc tggaactttg ggaaaaatag
     1801 tagaattacc caaagataca gaaatgggga ttataaatca agcactttta aaaataaggc
     1861 ttaataatat aaaaatctta aatagttatt ttatttatta ttttaattct ccaataatgc
     1921 aagagaaaat tttagaatcc accttaggtt cagcaatcaa aaatatagct agtgtaaaaa
     1981 ttcttaaaca aatcgaaatt ccgttaccgc cgctcaaaga gcaagaaagg atagtgggaa
     2041 ttttagatga gagttttgca aagatagatg agagtataaa aatcttagag caagatttgc
     2101 taaatttaga tgagttaatg caaagcgcct tgcaaaaagc tttcaatcca ttaaaagaca
     2161 atgctaaaga aaactataaa ctcccacaat cttgggaatg gaaaagctta gaagagatta
     2221 gcgaaaatat ttctgcgggt ggagataagc caaaaaactg cacagaaagt aaaactgcca
     2281 aaaatcaaat ccctgtttat gcaaatggtg taaataataa tggtttagtt ggatatacag
     2341 ataaagctac cattataaaa ccttctttaa ctatatctgc tagaggaaca ataggttttg
     2401 tttgcattag aaaagaacct tattttccta ttgtaaggct tatttcttta attccttgtg
     2461 aaaatatatt atgcttacat tatttatatt tttgtttgaa tttttttata gcaaaaggtg
     2521 aaggttctag tattccgcaa cttactatac caaaatttaa atc
//
LOCUS       DARGED010000149         2555 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.150, whole genome shotgun sequence.
ACCESSION   DARGED010000149 DARGED010000000
VERSION     DARGED010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.150"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..903)
                     /locus_tag="SFZ84_001622"
     CDS             complement(<1..903)
                     /locus_tag="SFZ84_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG8203706.1"
                     /translation="MKHYSISKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSG
                     LKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLL
                     NTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASL
                     EFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKR
                     SLEEVFYAAYILYSEYFNPYLNQKS"
     gene            complement(900..1412)
                     /locus_tag="SFZ84_001623"
     CDS             complement(900..1412)
                     /locus_tag="SFZ84_001623"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HEG8203707.1"
                     /translation="MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDRQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(1402..2163)
                     /locus_tag="SFZ84_001624"
     CDS             complement(1402..2163)
                     /locus_tag="SFZ84_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HEG8203708.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAEILKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK"
     gene            complement(2165..>2555)
                     /locus_tag="SFZ84_001625"
     CDS             complement(2165..>2555)
                     /locus_tag="SFZ84_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEG8203709.1"
                     /translation="PNVLSKKRDLYEKQVIEICLKEKIPLLGICRGAQMIAHYFNSHI
                     SPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDNTIEAFKHKYENIF
                     GIMWHIERENGLNNIQILREWFSLIKE"
BASE COUNT          851 a          439 c          273 g          992 t
ORIGIN      
        1 acttttttga tttaaataag gattaaaata ctcgctataa agtatataag cagcatagaa
       61 aacttcttct aaacttcttt tttgcatcct tcttttacac tctaatttat cttttgttag
      121 accccaacct gcataaaaag gcataccata acaaatacac tcacattctt gcatcaaagc
      181 ttcaaaaccc ataccagaag ttttggtata aaccttatca aaaaactcaa gtagggctat
      241 gggattaaaa ttttcagtaa ttaaaataca ttctttaggt aaggaattta tatctaaatc
      301 actttgtttt ttaccgctta aaacatcagg atggattttt atataaattt tagatttagg
      361 attttctttt atggcatctt ttatcatatc gacggtttta aaacctttag caagcccaaa
      421 ttcaagcgag gcatcattgg ccgtttgggt gatgattaaa accctttttt catctttttg
      481 aaaataatca tctggaatat cgagattgtt attatacttg ctaattttat attttttgat
      541 aagctctata gcttttttag cttgcttgat ttcttcatct ttaaattcat aagtatttaa
      601 aagattttca agctttgaag gtgctgttgc atcataataa atgcctatat catctttaac
      661 catagaaaaa cttgggctat tttcaacccc taagtttaat gagcggataa atccatcttc
      721 taaaagtatg aatttagcct tatatttttt agctaaattc atagctttta aacctgattt
      781 tttgcgtccc caaccaaaga aaagatcatc ttttttgatt tttaaatttt tcttatacaa
      841 agaaatagta taaaaatttc tagcattagc aataagtttt tttgatattg agtaatgctt
      901 cacaatgcca atttctttat tataagttca actttttctt ctaaattatt tcgacaagaa
      961 ttatcaatca ctaaatcagc ctctggttta tcaaattcta tatcaacacc aactacatta
     1021 tcaatttctt tatttaaagc cttagtataa agcccttttt gatctctttg cattaattca
     1081 tgcatatcgc attctatata aatttcataa taatttttta attgctttct attgtaatca
     1141 taaatctcat taaacattga aatcgtagtg acaataacta tcataccttg atcgtttaaa
     1201 aattttgcaa atttagctct tttcaaagcc atatctatgc gaccttgtct atcgtatgca
     1261 taatgtccta atatttctct taactcatct ccatcgagat aaataagatt tttatatttt
     1321 agctttaatt tttcatacaa agcttgacct atagttgttt ttccgcttcc agctaaacca
     1381 gtaagccaaa taatataagg actatttatc aatttgcacc tctaaatcac tcataaaatc
     1441 aatttcacac caattgccat caatttccac tgcttttgcg ttgttgtatt tttcaattaa
     1501 agcttgtaaa aaacttgtca tgtacatatt ttcaaaattt ttattatcat ataaaatatc
     1561 tcgatcaagc atttcataaa aagcaataac ttcggaaaga aattgataag aaaatttaaa
     1621 aagtcctata tattgagctt ctatctcatc ataggcatta gctttttttc caagttctat
     1681 aatataacca tttgtcatct ttaatatttc agcatcttct aaaggatttg caaagcgttt
     1741 gctccaaagc ttacgccaag acttatcaac tactatagca agttcttctt tggcatttat
     1801 aagcttttgc acacaatctt gaaaataaac aatatccgca taagaaataa tcaaatcttg
     1861 tttttcttcg atgcatttta acataaaatc tttagcgcaa aaaaaagtat gaaccatatt
     1921 ggttttatca tattttgaat taataaaaaa atgctcaata tcatatttat taagataatt
     1981 ttttagcaca tcgtttaaat atccacccac aacagctatt tcatttatac ctgctgattt
     2041 taaagcttcg atttcataat ctatgatttt tttattctta tactcaacca tacactttgg
     2101 ttgatctttt gttaaaggca tcagccttga tccaaaacct gctgctaaga taattgcatt
     2161 catattattc cttgattaaa ctaaaccact ctcttaaaat ttgaatatta ttaagcccat
     2221 tttctctttc aatatgccac attataccaa aaatattttc atacttatgc ttaaaagctt
     2281 ctatggtatt atcttttgct aagcaaagtt ctacaagatc ttcgcctaat ttttcaatag
     2341 caaaattatg aaaagaatta cttataaatt tttcttttga gaaaaatact tcatgtttac
     2401 ctatatgatt ttcacaagga cttatatggc tgttaaaata atgagctatc atctgagctc
     2461 ctctgcaaat tcctaaaagt ggtatttttt cttttaaaca aatttctata acttgctttt
     2521 cgtataaatc tctcttttta gataaaacat tagga
//
LOCUS       DARGED010000150         2520 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.151, whole genome shotgun sequence.
ACCESSION   DARGED010000150 DARGED010000000
VERSION     DARGED010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.151"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..574
                     /locus_tag="SFZ84_001626"
     CDS             <1..574
                     /locus_tag="SFZ84_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002904025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8203710.1"
                     /translation="KNIIKDKIHHSLLHSINYKFSLHTFSNSYENLIENGEFKESIAM
                     QKLGRYKDDEEPAKNYLYESVIYDSNIEKEIIKENHEIIETKTIKVFAKLPKLSIPTP
                     YKNYEPDFAYFLEDQKGKKIFFVCESKGYDKESDIALNERKKIDYARVFFQKLDENLK
                     NENIKIIFNTRINKQKLIHCINEVLKENNA"
     gene            567..2408
                     /locus_tag="SFZ84_001627"
     CDS             567..2408
                     /locus_tag="SFZ84_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004308388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEG8203711.1"
                     /translation="MLDINKIKKENLINTKENKNELLEYLKLNFPQTIKDGQVDLKAI
                     AMLLGLNNKEIRGYELSFTGKALANALYDTPNTKELKFHKSLSKNFETTKNAIIKGDN
                     LHALKLLKSAYYEKIKMIYIDPPYNTKNDKFIYNDDFVKEHKKLLIEVGLLEITEEGE
                     EIGSEILNFFINAKGDRSHSTWLGFMLPRLKLARDLLREDGVIFISIDDNEQANLKIL
                     CDEIFGKENFISCFIWQKKSGGGQAKYFYEGHEYMLIYTKDKTNLNGLFKFKEKPEIN
                     NDLIRKVHGKYTNNESIKKILNLYPKDTVDHRNLMFEELDIFLKENMISEKKYNDIKS
                     KIDSGEYFLQQYKDTKFHLICSYQDDNLSKMYSIFSGHWTSDGNEEIESIFNGKLVFE
                     NPKPTTLIKEIFFANTNQNDIILDFFAGSGTTAQAVMELNAEDNGNRKFILVQLDEKI
                     DENKSKVAYDFCKNELGSENPVISDITIERVKRAGEKILKENRDKNLDLGFKVFSLVE
                     KPELTKDELNTLNLKYHENLSPYEKALNLALLNGKTLDKDLKMILKDKLYECEDCFYI
                     VNCDDEVLDFLRKTQNENVYINGYDDINLEDYLNLESFLKERLKMVY"
BASE COUNT         1086 a          265 c          387 g          782 t
ORIGIN      
        1 aaaaaacatc atcaaagata aaattcatca tagtttatta cactctataa attataaatt
       61 ttctcttcat actttttcaa attcttatga aaatttgata gaaaatggtg aatttaaaga
      121 aagtatcgct atgcaaaaat tagggcgtta caaagatgat gaagaaccgg ctaaaaatta
      181 tctttatgaa agtgtgattt atgattcaaa tatagaaaaa gaaatcatca aagaaaatca
      241 tgaaattatc gaaactaaaa cgataaaagt ttttgccaaa ttaccaaaac ttagcatccc
      301 tacaccttat aaaaactatg aacctgattt tgcttatttt ttagaagatc aaaagggtaa
      361 aaaaatcttt tttgtatgcg aaagtaaagg ctatgataaa gaaagtgata tcgcattaaa
      421 tgaaagaaaa aagatagatt atgctagagt gttttttcaa aaattagatg agaatttaaa
      481 aaatgaaaat ataaaaatta tttttaacac aaggataaat aaacaaaaat taattcattg
      541 tatcaatgaa gttttaaagg aaaataatgc ttgatataaa taaaatcaaa aaagaaaatt
      601 taatcaatac aaaagaaaat aaaaatgaac ttttagagta tttaaagcta aatttcccac
      661 aaaccataaa agatggacaa gtcgatttaa aggctattgc tatgctttta ggcttaaata
      721 ataaagaaat tagaggttat gagttaagtt tcacaggcaa agctttagca aatgctcttt
      781 acgatactcc aaatactaaa gaattaaaat ttcataagag tttaagcaaa aactttgaaa
      841 ctactaaaaa tgctatcata aaaggggata atcttcatgc cttaaaactt ttaaaatccg
      901 cttactatga aaaaataaaa atgatttata tcgatccgcc ttacaatact aaaaatgata
      961 aatttattta taatgatgat tttgtaaaag agcataaaaa acttttaata gaagttggac
     1021 ttttagaaat cacagaagaa ggtgaagaaa tcggaagtga aattttaaat ttctttatca
     1081 atgctaaagg cgacagaagt catagtacat ggcttggctt tatgctacca cgccttaaac
     1141 ttgctagaga tttactaaga gaagatggag tgatatttat aagcattgat gataatgaac
     1201 aagcaaattt aaagattctt tgtgatgaga tttttgggaa agagaatttt atttcatgtt
     1261 ttatttggca aaaaaaatca ggtggaggac aggcaaaata tttttacgaa ggacatgagt
     1321 atatgcttat atatacaaaa gataaaacaa atttaaatgg actttttaaa tttaaagaaa
     1381 aaccagaaat taacaatgat ttgataagaa aagtccacgg taaatatacc aataatgaat
     1441 ccattaaaaa aattttaaat ttatatccaa aagacactgt cgatcacaga aatttaatgt
     1501 ttgaagaatt agatattttt ttaaaagaaa atatgattag tgagaaaaaa tataatgata
     1561 taaaatcaaa aattgacagc ggcgagtatt ttttacaaca atataaagat acaaaatttc
     1621 atctcatttg ctcttatcaa gatgataatt tatcaaaaat gtattccata tttagtgggc
     1681 attggacttc agatggaaat gaagaaatag aaagcatatt taatggcaaa ttggtttttg
     1741 aaaatccaaa accaaccaca ttaataaagg aaatattttt tgcaaataca aatcaaaatg
     1801 atattatcct agacttcttt gcaggtagtg gcacgacagc acaagcggta atggaactca
     1861 acgcagaaga taatggaaat cgtaaattta ttctagtgca acttgatgaa aaaatcgatg
     1921 agaataaaag caaagtggct tatgattttt gtaaaaatga actaggaagc gaaaacccag
     1981 ttattagcga tataaccatt gaaagagtta aaagagcggg tgagaaaatt ttaaaagaaa
     2041 atagggataa aaatttagat ttaggcttta aagtattttc tcttgtagaa aaaccagaac
     2101 taacaaaaga tgaattaaac actttaaatt taaaatatca tgaaaattta agcccttatg
     2161 agaaagcttt aaatttagcc ttgctaaatg gtaagacttt agacaaagac ttaaaaatga
     2221 ttttaaaaga taaactttat gagtgcgaag attgttttta tatagtaaat tgcgatgatg
     2281 aagttttaga ttttttaaga aaaacacaaa atgaaaatgt gtatattaat ggatatgatg
     2341 atataaattt agaagattat ttaaatcttg aaagcttttt aaaagaacgc ttgaaaatgg
     2401 tgtattaaga tgggccaaga aattattaaa tttattaagc aaaaagatta tgaaaaaatt
     2461 actttcttag atgaaggatc atttggtaag gttttattga ttagagatgt ttttattgat
//
LOCUS       DARGED010000151         2489 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.152, whole genome shotgun sequence.
ACCESSION   DARGED010000151 DARGED010000000
VERSION     DARGED010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.152"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1171)
                     /locus_tag="SFZ84_001628"
     CDS             complement(<1..1171)
                     /locus_tag="SFZ84_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8203712.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPL"
     gene            complement(1184..2488)
                     /locus_tag="SFZ84_001629"
     CDS             complement(1184..2488)
                     /locus_tag="SFZ84_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8203713.1"
                     /translation="MLAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYIILTLGVGFVI
                     FLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYTLVIGWIVKYV
                     FLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKGVKNGIEKLNV
                     WMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALGLAFFSLSLGV
                     GTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYNPNQQGPGLVF
                     ISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTFGMSRKKALIL
                     IGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGILAAIFVGFVMK
                     KEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
BASE COUNT         1123 a          457 c          278 g          631 t
ORIGIN      
        1 caagtggaag taaaaaattt gaagttaatt tatctaataa agtaaaaaaa tctttgccaa
       61 aaaaactaaa catagaaaaa aaatttaaat ttaatgacaa gatacaacaa attccaaaaa
      121 caaaaacaaa taaacctatt aaaaatagag ctttaacacg agaaatttga tagttattaa
      181 tcatataaaa agttaaaggc tctatcattg aaatagctga agtaatacca gcaaaaaaaa
      241 gtgctaagaa aaaacaaaat gcaaaaatat agcctaaagc tccaagttga ttaaacaaac
      301 tcatcaagga tacaaaaaca attcctgctc cttgagtatg cggatcggct ccaaattcaa
      361 agataaaagt aaaaacaata agtcccataa taaaagaaat caataaatta atcaaaacaa
      421 tatacactga actttttata aaatttgttt ttttatccaa ggccgatgaa tatgtaacta
      481 tacaacctat tcccaagcat aaggtaaaaa atgcaagccc taaagcttcg gcaatagagc
      541 tgaatttaaa atgtgaaaaa tcgggataaa ataaataaga aaaagcattt gcaaaacctt
      601 gcttaaatcc catgcaataa aacaacataa aaacaagcat taaaaataag ctaggcatta
      661 taacaacgtt taatttttca atccctttga ttaaaccttt agatactatc aataaagtaa
      721 gaaaaaaaga taaagtgaag aaaaaaacag aacttgtcaa atttgtagta attaaattct
      781 gaaaattact tgctgcttca tctaaagttt taggaagata ataaagactc actacagtat
      841 attttaaaac ccatcccatg ataactagat aaaaagagag gataaaaata ccacctaaca
      901 taaaaacgcc gccatatcgc catctattac catattttat ggcaagattt gaataagcat
      961 ttgcaagatc acttttactt aaacgtccca tagccacttc agccaaaaaa atactaaatc
     1021 ctatagttaa agtaaaaaac aaatataaaa gcacaaaaac aaaaccacca ttttctgcgc
     1081 ttaaagttgg aaatttccaa gcattaccta aaccaacggc tccaccagca acagccaata
     1141 caaaaccgat ttttgaaaaa tatgttctca ttatttttca aactcacttt aaaaaagcgg
     1201 ctatcataac tataacaaca gccaaagggg aaataaatct caaaaacaca taccaaagtt
     1261 caaaaaatat acccctcata taaggtttaa ataaaatttt taaagcttct tttttcatca
     1321 caaatcccac aaaaatagct gccaaaattc cacctaaagg cataataacc ttgcttgaaa
     1381 cactatcaag caaatcaaaa aaactcattc caaaaaatcc aaactgagta ctttttaaag
     1441 aagataaaat acacaacatt cctaaaatat aaacaacaat tcctattaaa atcaaagctt
     1501 ttttacggct cataccaaaa gtattaataa ggtaaaaagt gaaaggctct atcattgaaa
     1561 cagctgaagt aataccagca aagattaaag aaataaaaaa cgctgctcca aaaatacaac
     1621 caatcactcc aattttttca aataaagtag ctaaggaaat aaaaacaagt cctggtcctt
     1681 gctgattagg attgtaacca aattcaaaga taaaagtaaa aacaaccaaa cccattaata
     1741 aaccaactaa aagattgata aaaataatat ttaaagtact ggtaataaaa ttagttttat
     1801 caggcagact agcagaataa gtaataatcg ttccaacgcc caaagaaaga ctaaaaaaag
     1861 caagtcctaa ggcttcaaga acgtttgaag tgttgatttt ggaaaaatca ggtacaaaaa
     1921 gaaatttaac cgccattata aaaccatctt tgctaatagc ataaacaagc atcaaaataa
     1981 gtaaaataaa caatgaaggc atcatccaaa catttaactt ttcaatccca ttcttaacac
     2041 ctttagaaac aatataaaaa acacataaaa aaaccaaagt aaaacaaata aactgactta
     2101 aaaaatcctc acttataaaa aatccaaact gtgctttact tacttctaga tccataggca
     2161 aatttccagt gatacttaaa aacacatatt taactatcca gccaatcacc aaggtataaa
     2221 aagaaactat taaaatcgcc cccaccatag taaaaccaac ataagaccaa gcttttttat
     2281 ttgaaggtgc taacttttca taggcattaa ccggatcttt ttcactaatt tttcctatgc
     2341 taagctcagc taaaaatatc acaaaaccta cacctaaagt aagaattata taaagcaaga
     2401 taaaagcaga tccaccactt tgacctacta gtgttggaaa tttccaagca ttacccaagc
     2461 ccaccgctga acctgctacc gctaaaatg
//
LOCUS       DARGED010000152         2473 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.153, whole genome shotgun sequence.
ACCESSION   DARGED010000152 DARGED010000000
VERSION     DARGED010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.153"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..353)
                     /locus_tag="SFZ84_001630"
     CDS             complement(<1..353)
                     /locus_tag="SFZ84_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8203714.1"
                     /translation="MADAHENEQRKGFWEFLQALKKGKISTPQLILMGDIFDLLIGEI
                     SATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQPIKLNLHTS
                     KGNNLVLNNAFIKLA"
     gene            complement(390..875)
                     /gene="greA"
                     /locus_tag="SFZ84_001631"
     CDS             complement(390..875)
                     /gene="greA"
                     /locus_tag="SFZ84_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG8203715.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(887..1981)
                     /locus_tag="SFZ84_001632"
     CDS             complement(887..1981)
                     /locus_tag="SFZ84_001632"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG8203716.1"
                     /translation="MKTFLVCALEPSANLHLKEILKAYKNEYKEFDLVGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKEAIKKLVNLSFTQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIKRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEIYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            complement(2104..>2473)
                     /locus_tag="SFZ84_001633"
     CDS             complement(2104..>2473)
                     /locus_tag="SFZ84_001633"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203717.1"
                     /translation="QEDKAIYNIFSNYIIGYIDCFIGEPVLNANINEILGEIDKVIQR
                     NSFNEYIENNSKLINIIIKNNFHTQQYPSSIKCEELDKFYKWFKALNGKMQKLVLDNL
                     EEKISQIPFISKNDDFALPF"
BASE COUNT          824 a          398 c          304 g          947 t
ORIGIN      
        1 tgagctaatt ttataaaagc attatttaaa acaagattat tacctttact tgtatgcaaa
       61 ttaagcttta tgggctgctc ttgtaagtta aaaattttta cccttttaaa aaaacaagaa
      121 agattaaaat catgattgcc ttctaagtag ataatttcaa tttttaaggc caattcttct
      181 aaaagttcta tgtaaggttt agcaaattca tgtgtagcag agatttcgcc tataagcaaa
      241 tcgaaaatat cacccataag tatgagttga ggggtggaaa ttttaccttt ttttaaggct
      301 tgtaaaaatt cccaaaatcc ctttctttgt tcattttcat gagcatctgc gattaaaatc
      361 gctccatttt gtagtaaaat tttttatcct taaaatttca aaggctcata atttatagaa
      421 aggatttcaa attcactttc accttttggc aaacgcactt taaaatcatc tccttctttt
      481 tttccaagca tagcttttgc tattggagat gcgatggaaa tataaccctt atctaaattt
      541 ccttcgcaaa ttcctactag agtatatttg ctttcttttt ctgtatccaa atccatgatc
      601 acaacacttg aaccaaattt cacactatcg tgctcatagc ttgaaggatc gatcacttga
      661 gctcttgcta gcaagtcact aagctctgca atacgacttt ctatcaaagc ttgcttttct
      721 cttgcagcat ggtattcagc attttctttc aaatccccat gacttcttgc tgtatcgatt
      781 tctattacaa cggcagggcg ttgattgtct tttaaatctt ttaattctgc ggctaactta
      841 tcatagccaa attgactcat tggttctttt tgcatgattt atccttttat atttcgttta
      901 ggatttttgc taaattttta gcacttccaa attgtaaata ttcttttaaa aaatcaactt
      961 tagcaaaaaa tgccttataa tcatatttat tgtaagcttc atataaattt aaaacattga
     1021 ctttatcttg taaaaattca ggatttaaag cttcttttcc agcgaaatca caaaaaatat
     1081 ttgcaagtcc tatatgtttt aattttacaa aaagttttgc gataaaaata tcgatagcct
     1141 ttgccttata agcaagaaca aaaggagttc ccactaaagc tgcttctaaa gtagctgttc
     1201 cactacaaat aaaggcaaaa tcagcttttt taagcacttt tggagtgtta ctttctatct
     1261 taaattcgct aatatcacca taaatttcta atttttcaag attaaacgag ggaacgcaaa
     1321 gaattttttc acccttaaat ttttgagaaa gttctttaaa aataggcatt aaacgcttaa
     1381 tttcactacg ccttgaacct ggtaaaaagg ctatagtttt ttcatcatct ttttttgaaa
     1441 atgtatgatt aatgtcttct tgatttttaa attcttttat ttcatctaaa agcggatggc
     1501 ctatataggt gcttttgtta aaaaactgat tatcaaaggg caaaatagaa gctaaaatat
     1561 caaaatgact ttctatgata ggtatgcgac cttttttcca cgcccaaact tgaggcaaga
     1621 tataataaat gcgtggaatt ttactgcctg ctttttttaa agccttagca aaaggtatgt
     1681 taaaagcggg cgaatctata cataaaatcc catttatttt ttgagtaaaa cttaaattta
     1741 caagtttttt tatagcttct tttgctttaa aaatcaaagg taaaacttct ataaaaccca
     1801 tagcactaaa ctcatgtgag ctataaagtg gtttagaatt taaatcaaat tctttacata
     1861 aactctcatc ataaattcct actaaatcaa attctttata ttcattttta taagctttta
     1921 aaatttcttt taaatgcaaa tttgctgaag gctctaaagc acaaactaaa aaggttttca
     1981 tttttactct ttcttatttc ttaaggaaat atcacaaccg attttttaat attttaatag
     2041 ttttaatttc atattatctt aacttcatta tttgataaat ttatacttgc ttagtttata
     2101 taattaaaaa ggcaaggcaa aatcatcgtt ttttgatata aaaggaattt gagatatttt
     2161 ttcttcaaga ttatctaaaa caagtttttg cattttgcca tttaacgctt taaaccactt
     2221 ataaaattta tccaactctt cacatttgat agaactagga tattgctgtg tatgaaaatt
     2281 atttttaatg attatgttta taagtttaga attgttttca atatactcat taaaagaatt
     2341 tctttgaata accttatcaa tttctcctag aatttcattt atattagcat ttaatacagg
     2401 ctctcctata aaacaatcaa tataaccaat aatataattt gaaaaaatat tataaatcgc
     2461 tttatcttct tgg
//
LOCUS       DARGED010000153         2468 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.154, whole genome shotgun sequence.
ACCESSION   DARGED010000153 DARGED010000000
VERSION     DARGED010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.154"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..445
                     /locus_tag="SFZ84_001634"
     CDS             <1..445
                     /locus_tag="SFZ84_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG8203718.1"
                     /translation="ILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSFFKA
                     KIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQKHD
                     ISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            366..1919
                     /gene="rny"
                     /locus_tag="SFZ84_001635"
     CDS             366..1919
                     /gene="rny"
                     /locus_tag="SFZ84_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG8203719.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     QEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1928..>2468
                     /locus_tag="SFZ84_001636"
     CDS             1928..>2468
                     /locus_tag="SFZ84_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8203720.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLS"
BASE COUNT          939 a          340 c          434 g          755 t
ORIGIN      
        1 tattcttaat aaaaattaca aactttttgt tccatttatg caagataaaa gtttaaaaat
       61 tgtaaaatta agattgcctt ttattaaaaa aaggtttggg gttttagagc ctatagattc
      121 tttttttaaa gcaaaaattg atttagctat tgtgcctgta attggcgtcg ataaaaattt
      181 aaaaagaata ggacatgggc aaggttttta tgatagattt tttgaaaatt taaattacaa
      241 acctcatata atatttgtcc aaagtataga tgctttaagt caaaataatc taacacaaaa
      301 gcatgatatt tcaggaaaat tatacataaa cccttataaa aaatattaca agaaagaaag
      361 aaaaaatgat agaatcactt atcgcactta tagccgctat agtcggactc ggtataggat
      421 atttagttgc aaaaaaaatc aatgatgcca aatatgaaat tttcgtagaa caagccaaag
      481 ctaaagccaa agctatagaa tacgaagcgg agcttatttt aaaagatgca aaaaattcaa
      541 ttcttaatgc agaattagaa gttaaaaaaa aatacgaaga aaaaactcac aaaattcaaa
      601 aagattttaa tcaaaaattt gatgatcttt ctaaaaaaga acaaaaactt cagcaagaag
      661 aagaaaaact acaagaagat aaagaatacc tttgcaagtc acaaaaacac attcaaaact
      721 tacaatctga tgttgataaa ttaaaaaata aatatcaaga aaaacttgac gatgttttaa
      781 aaattttaga acattcgaca ggacttacac aaaatgaagc caaagaaatc attcttaaaa
      841 aagtagaaga aaattctcgc gagcaaattg cacatatagt aagaaaatat gaagaagaag
      901 caaaaaatga agctaaaaga aaagctaatt tcatcattgc tcaagctact tctcgttttg
      961 caggtgaatt tgcagctgaa agacttatca atgttattaa cattaaaaac gatgaactta
     1021 aaggacgtat cattggtaaa gaagggcgca atgttaaaac cttggaaatg gttttaggtg
     1081 ttgatattat catcgatgat acaccaggtg ctattatagt aagttgtttt aatctttatc
     1141 gccgtgctat tgctacaaaa gttatagaac ttttagttga agatggcaga attcaacccg
     1201 cgcgcataga agaaattcac gaaaaagtgt gtaaagaatt tgatagtgcc attctagaag
     1261 aaggcgaaac catagttatg gatctaggtt taaataaaat acaccctgaa attgtaaaac
     1321 tcataggaaa actcaaatac cgagcaagct atggacaaaa cgctttagca cattctttgg
     1381 aagtggctca ccttgcagga atcattgctg ctgagtgtgg tggagatgag aatttagcac
     1441 gtcgtgcggg aattttacat gatataggaa aagcattaac ccatgatttt gaaggatctc
     1501 atgtggattt aggtgcagaa ctttgcaaac gctacaaaga gcatcctgta gtaatcaatg
     1561 ctatttacgc acatcatgga cacgaagaag ctacaagcat agaatcagca gctgtttgtg
     1621 cagcagatac tttaagtgct gcacgacctg gagctagaag agaagtgtta gaagctttct
     1681 taaaaagagt cagtgagcta gaagatatcg ctaaaagtaa agaaggaatt aaaaatgcct
     1741 atgcaatcaa tgccggaaga gaaattcgcg tcatagccaa tgctcagctt gttaatgatg
     1801 atgaaagtgt acttttagct aaggaaatag cagctgaaat tcaagaaaaa atgcaatatc
     1861 ctggtgaaat taaagtcaat gttatacgtg aacttagagc tgtagaatac gctaaataag
     1921 gtttattatg caagatatga ttgatacttt aataaaatat ggttatattg ttttattctt
     1981 ttactcttta gggggcggga tggttggaat tttagccgca ggagttttaa gttctcaagg
     2041 aaaaatggat cttagttttt gcattgctct tgcttttatt gctaatacca taggttcaac
     2101 tttgcttttt atacttggaa aatattataa aaaagacatt atgccttatt ttaaaaaaca
     2161 ccgacgcaag atagcccttg ctatgataaa aacaaaacaa catggaatta ttttacttgt
     2221 aactcaaaaa tttatttatg gtttaaaaac tttcattccc atagctgcag gtatggcaaa
     2281 atataatttt attaaatttt ttattatcaa tactctagct agtttggcat gggctattgt
     2341 tctaggtttt gctgcttata cttttgggta tgttattgaa gcaatttttg ataaactgag
     2401 tttatatcct tatgctgctc ctttattttt attattttta gccggaataa tttggcttta
     2461 tttaagta
//
LOCUS       DARGED010000154         2454 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.155, whole genome shotgun sequence.
ACCESSION   DARGED010000154 DARGED010000000
VERSION     DARGED010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.155"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..218
                     /locus_tag="SFZ84_001637"
     CDS             <1..218
                     /locus_tag="SFZ84_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203721.1"
                     /translation="KPNVKEKIHFFAMFFTLFKLMAYVVLVAGFLFLHRQDKLDIFAY
                     ICGISSLLVCVFIFILYIKKYESKKNY"
     gene            196..1383
                     /locus_tag="SFZ84_001638"
     CDS             196..1383
                     /locus_tag="SFZ84_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8203722.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFSPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1376..>2454
                     /locus_tag="SFZ84_001639"
     CDS             1376..>2454
                     /locus_tag="SFZ84_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8203723.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKYIKVSKEETL"
BASE COUNT          896 a          336 c          347 g          875 t
ORIGIN      
        1 taaagccaaa tgttaaagag aaaatccatt tttttgctat gttttttact ctctttaaat
       61 tgatggctta tgtagtattg gttgctggat ttttattttt acatcgccaa gataaattag
      121 atatctttgc ttatatttgt ggaatttcat ccttgctagt ttgtgtgttt atttttattt
      181 tatatataaa aaagtatgag tccaaaaaaa attattaaat caatgacagc actttttgct
      241 ggtatggcat ttttatttgc aggtaatgcc ttgatagtaa gctctatagg tgttatatta
      301 aaagaaaacg gagaaagttc tttagctgtt ggagtagtaa gttcttgttt ttttgtaggc
      361 gctcttattg gaaccatcag tgctcataaa attatttctc gtataggtca tatacgctct
      421 tttgggctat ttggtgctat ttttggaatt tcagctatgc ttcatacagt aagcgaaaat
      481 cttatttttt gggctgtttt aagatttttc ataggaattt gctactatgg acttttaatg
      541 gtcatagaat catggcttaa tgaaaaaagc aaaaatgcca ttcgatctag aattttaggt
      601 ttttatgaaa ttgtttttta tcttgcgttt ggtattggag ttttaatcat agcgttaaat
      661 ttaagcaaac atagtgtatt tatcctcagt gcaactttaa ttttactttc atctttacct
      721 ttaaatctaa ttaaaatcaa agaacctgtt ttacccgcat caagtcctat ttctatacct
      781 aaaatttttg atatagctcc tttagctatc gtcacaagct ttatagccgg aatgcttata
      841 aatggctttt tttctatggc atctttattt atacttttgc aaggttttga tacaaaagcg
      901 gtttcttatt ttatattttg tggggtttta ggtggtttta ttgcacaaac catcatagga
      961 actatttcag acaaacttgg tcgcaaattt gccattatca cttgtgcaag tataggattt
     1021 atcactatgc ttatatttat cttttttaaa cttcatttat atatgcaata ttttttagga
     1081 attactcttg gtataggaat attttgctta tatgctttag cacttgctag agcaaatgat
     1141 gttttagtaa gcaaaaataa aggtgtagag ttaggtcgtg gggttctttt ttgttattct
     1201 ttgggctctt tgtttagccc tttaatttta ggttttttaa tgcaatattt tgaaatcaaa
     1261 ggttttatat ggttttatat agtttcttta gcatttttaa ttctttttgc tatcaataaa
     1321 ccaaatattt taaataaaaa atttaagaaa aagcctggaa atatggtgat atttgatgat
     1381 taatactcaa ctagcaagtc aaattgccaa tacgcaaaaa aatgatttaa aagtagataa
     1441 ctctgcttca aaagataaaa caaatttaaa agacaatcca aaagaagcac ttgcacaagc
     1501 tttaaagcaa aatttaggtt taagcaagga cgctagtagt gaggaaatac tagcaaaatt
     1561 tgttcaaaat gaaacaggta ccaaattaaa agaacttgtt aataaacttt tagatcaaat
     1621 caatgctcaa aaaaatcccg attcccctgt acttaaacaa ggaaaaaatt taaatttagc
     1681 tcctaatttt gctaatgaat taaaaatctt aagtacagaa cttgcaaaaa gtgatacttt
     1741 tacacaagtt ttagacagat taaatcaaat tttaaaacct gccagtgaaa taaaaaacaa
     1801 taacttagct cctttgttta aaaattcagg cgtattttta gaagctaaat taaaagatgc
     1861 cctaaacgaa gaattactac ccaaaagttt tcactctctt ttaagtacaa tcaaaggtct
     1921 tagtagcgaa aaactaagcg ttcagatagc ccagcttgca aatacaaatt taagcccaaa
     1981 agacacttta aaagaattaa aaaatattat taattctagc aaaaatgaaa ataagcaaat
     2041 tttaaatcaa agttctttta aagcactttt aaatttaagt tctaaattgg aaaattttaa
     2101 aaattatata agtaaaaatc ccagtcatgc tcaagaaaaa atcaccccta tagctaataa
     2161 aattttaaaa gaattaaatt ccatcaaaaa tgattttttc aaagctctta ataagccaga
     2221 aaatttaatg ataaaagatc caaacatcct taagcaaact gctaccgcct ttgaaaaact
     2281 tgaaaatact ttaaaaaata tactaggcaa tcaagcttct aaaatacaag ataaagaaaa
     2341 tattttagaa aatcttttaa gtaacaaaga aaatatcaaa gaagaaaaac ttaatcataa
     2401 cacaaaaaac caagatgaag aaaaatatat aaaagtatca aaagaagaaa ctct
//
LOCUS       DARGED010000155         2370 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.156, whole genome shotgun sequence.
ACCESSION   DARGED010000155 DARGED010000000
VERSION     DARGED010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.156"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..347
                     /locus_tag="SFZ84_001640"
     CDS             <1..347
                     /locus_tag="SFZ84_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203724.1"
                     /translation="FSTPLTCDLNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVN
                     LGNYNNLGIKIYGLNMYMGEIKPKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNK
                     PIGFYFDFELKK"
     gene            344..904
                     /locus_tag="SFZ84_001641"
     CDS             344..904
                     /locus_tag="SFZ84_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG8203725.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(911..1810)
                     /gene="cysM"
                     /locus_tag="SFZ84_001642"
     CDS             complement(911..1810)
                     /gene="cysM"
                     /locus_tag="SFZ84_001642"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG8203726.1"
                     /translation="MKVYEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKII
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(1937..2233)
                     /locus_tag="SFZ84_001643"
     CDS             complement(1937..2233)
                     /locus_tag="SFZ84_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG8203727.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
BASE COUNT          821 a          386 c          290 g          873 t
ORIGIN      
        1 atttttctac cccattgact tgcgatctta atgttaaaga ctgcacatat agttttaaca
       61 ataaaaaagt cttaatttcc ctaaatccca aacccttaca atctttagat gttacaaatc
      121 taaagattgt aaatctagga aattataaca acttaggaat taaaatttat ggattaaata
      181 tgtatatggg cgaaattaaa cctaaaatac atcgattaaa ttcaacagac tatgaaagta
      241 aaatagttct tgctgcttgc gttttagata ctatgcgttt cagggtagaa tttatggata
      301 ataataaacc catagggttt tattttgatt ttgagctaaa aaaatgaaaa aaaatattat
      361 tttgtttata gttatagttg ccattatttt aggtgtaata ttttttatta aaaatcatca
      421 aaattcttat gattttatct taaaatcaga cttaaaagag gaaaccaccc taaaagattt
      481 taaaggagat aagcttatta tctattttgg atatacttat tgccctgatg tttgtccggc
      541 aactcttagt ttagtaggca aagccttaaa gcaaatcaat aatcctaagg ctcaccttct
      601 ttttatttct ttagatccaa atagagataa taacttaagc aatacaaacg aatggttacg
      661 atacttttac ccaaaagcag atgccttaat tgcaaaagat gaaaaaactc ttcaaaaaat
      721 aacaaaacaa tataatgttc aatatcaaaa aatagatcta aatgattctt ttatgggtta
      781 ttctatagca catagcaata tgctttatct tattgatgaa aaaggtcatt tttataaaga
      841 aattagcgat ttaaatccac aagaaatttt aagagaactt agaatttttc taaattctca
      901 ataattatac ttaagcaaaa agatcagttg agaggtatct ttcagccgta tcgtttagca
      961 tagttaaaat tcttttatct ggaaatttct ttgctagcat acttgcggca aatacatttg
     1021 ctccacttga tatacctacc attaaaccac ttttggcaag ttctttggct gtatttatag
     1081 catcttcatt acttactgtg atcacttcat ctataacttc tttatttaaa atagcaggta
     1141 taaaattcgc ccctattcct tgtattttat ggcttcccgc ttcacctttg ctaagcaatg
     1201 gagaatttag aggctcgact ccaacaatat gcactttttc taatttttct tttagtattt
     1261 ccccaactcc actaatagta ccgccagttc caaaaccagc tacaaaaata tcaagttcat
     1321 tatccaaatc tcttaaaatt tctaaagccg tattcttacg atgcgcattt ttatttgaaa
     1381 tattttcaaa ttgagaaacc ataaaagaat ttggagtatt taataatatt tcatttgctt
     1441 tatcaaccgc tcctttcatt cctaaatttg caggagttaa ttctaaccta gcgccaaaga
     1501 gtgttattat ttttcttctt tctaaactca tagattcggg cattacagca ataaatttaa
     1561 gtcccaaatc tgcacaaatc atagccaaag aaattccagt atttccacta gttgcttcaa
     1621 ctattgtagt atcttgatta atttttttac tatctaaagc atctttaatc atttcaaaag
     1681 ctgctctatc ttttatagaa tgactaggat ttaaaaattc acatttagca aaaacattga
     1741 taccaaattt tttcaaatgt ataataggag tatttcctat aagctcactt actttttcat
     1801 atactttcat aattttaata tcctttttta tttaataatg atagttttat aaaagtttaa
     1861 aaaaataaag taaataaaag atacaaaata tctgaattaa ttaagaaaga aggctagaat
     1921 ttatctagcc gaagttttat tttttctttt tgccgcttgc ttttgcaaca gcttctttaa
     1981 ggtttttacc taccttaaat tttgcaactc ttgtagcagg aactttgatt gtttttcctg
     2041 tgcttggtac tctagcttct ctagcagctc tttcttgagt tgaaaaagta ccaaaaccaa
     2101 taaaactgat gctatcacct ttagctaaaa catcagtaat agtagaaata actgcatcag
     2161 tagcagtagt agcgtctttt tttgttagcc cagctgtttg agcaactaat gaaataaaat
     2221 ctgctttagt cataaaagct cctttgtttt aattgaaacg cctaatttta gcatatttaa
     2281 aaaacaatat caagtaaaaa acagcttttt ttaagttttt ttcaaaaaac tttattattt
     2341 tttcttatat ctttcaaatt ctccactatt
//
LOCUS       DARGED010000156         2304 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.157, whole genome shotgun sequence.
ACCESSION   DARGED010000156 DARGED010000000
VERSION     DARGED010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.157"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            48..359
                     /locus_tag="SFZ84_001644"
     CDS             48..359
                     /locus_tag="SFZ84_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203728.1"
                     /translation="MDLKNINFRNYNQHNRNFFFENGIKLRFRNTHKVDIVLSLLQNL
                     RNRSYHWENILKTTEKNGKHYPRLTTKIENTHVGVDPQKIDLFLSDLIKTFNEEILEY
                     C"
     gene            448..1679
                     /locus_tag="SFZ84_001645"
                     /pseudo
     CDS             448..1679
                     /locus_tag="SFZ84_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109226.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
BASE COUNT          997 a          282 c          312 g          713 t
ORIGIN      
        1 gaactattat tcatcttatc aaagaaaata aattacaaaa ctctataatg gatttaaaaa
       61 atatcaattt tagaaactac aatcaacaca atagaaattt cttttttgaa aatggtataa
      121 aattacgctt tagaaatacg cataaggttg atattgttct tagcttatta caaaatctaa
      181 gaaatagaag ttatcattgg gaaaatattt taaaaactac agaaaaaaat ggcaaacatt
      241 atccaagatt aacaacaaag attgagaaca ctcatgtagg agtagatccg caaaaaatag
      301 atctattctt aagtgattta attaaaacat ttaacgaaga aattttggaa tattgttaat
      361 ataaaaaaag tgggctgcta ggaagccctt tgaatttaat tgcaattata gcaataataa
      421 tattaaagga aactaaaagg atatacgatg ccacaaaaaa gaatttatct ttatgttcca
      481 tttaaagaca aagaaaaagt aaaatcatta ggggcaatgt gggatgataa agaaaaaaaa
      541 tggtttgctc taaaaagttt agataaaaat attttctcac aatggcttta tccgcaccaa
      601 aataaagaat tttcatttga tgaaaatgaa gttttaacta cttttaaatc tgctttagaa
      661 aatcaaggtt taatcgttga tggcttacct atcatggatg gcaaaatcca cagagtaaaa
      721 acaacaacag ataaaggcag agaaatgagt ggagcttata gtggattttt agatgaatac
      781 cctgctggtt ttattcaaaa ttttaaaaca ggtattaaag aaaattggaa aatgccttta
      841 gaaaatgcaa aacaaaacat tgtaagttat caaactccta gtcaaaaaag attacataat
      901 tctacaagca ataatacgaa acaagacatt ttagagcttc agcaaaaaac agcattaaaa
      961 attgaagaag aatataatca agctaattgg gctcatttaa atcatcctta tttaaagaaa
     1021 aaaggtttta gtgaaaactt ttatcttaag caggataaca aaggttcttt acttattccc
     1081 ttaaaagatg aaaatggcaa attatggtct gtgcaaagaa tattcccaaa tggtgataaa
     1141 attattggtg taattaaaac taaagaagaa aaagagcaag gcattgaata ttctgcaaaa
     1201 aaatctggat gttttcacct aataggtgca aaaaacctag aatattgcaa agaatttatc
     1261 atagcagaag gctttgctac tgctgcaact atatacaaag cactcaataa gcctgtaata
     1321 atgggtatag atgctggaaa cttatcaaaa atcgttgaaa ccctaaaaaa caaatttcaa
     1381 acactcctat taccttaata gccgataatg ataaaaaaag agaattaaaa ggtctttcta
     1441 atgtcggagt ggaaactgca aaagaaattc aacaaaaatt ttcagatatt aaagttatta
     1501 ttccaaaaat cagcaatcaa gaagcagaac aaggaataag tgatttcaat gacatttttt
     1561 taaataaagg gattgatgaa gtcaaaaaac aattaaattt cattgatttt cataataaac
     1621 ttaaagcttt taaatctatg gaaaaaacac aacctgaaaa agagataact agacaataat
     1681 agctactctt tgtaatcata atatataata atatataaaa aatatttttt atatattatt
     1741 agttaataat agaatatttt aattactata aatatacaaa aaaaggatta aaaatgaaca
     1801 atacaatcaa actaacttta ttaagtgtag ttactgcttg tgtttttttg cttgctcttc
     1861 agagccaaaa aagtatgtaa tactatgaag atccaaaaaa tgctacagag ttagaatcta
     1921 aaatcaaaga atgtgcaaat gcttcaagtt attctaaatc atttaattac aaaccacaag
     1981 taagtacaaa agaacttatg gaacaagtag agaaaatata aatgaatgat ctttttcaaa
     2041 ccctgggtga aagcataaca ataaatcatt gatgctataa gacaaaaagt cacaaataat
     2101 aaggttgttt gaaagtaaat aactattata tattactaat ttttaatata taatagttat
     2161 ttttagtaat taatgtcata cattaattac tattttataa ttctcttatt atatatgtaa
     2221 aatctttttt aatattcatt aaattatcaa tgccgctagt taagataatt tgaattttct
     2281 tatctacaat tatatatcta tcgt
//
LOCUS       DARGED010000157         2266 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.158, whole genome shotgun sequence.
ACCESSION   DARGED010000157 DARGED010000000
VERSION     DARGED010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.158"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            77..319
                     /locus_tag="SFZ84_001646"
     CDS             77..319
                     /locus_tag="SFZ84_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203729.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            316..1617
                     /gene="miaB"
                     /locus_tag="SFZ84_001647"
     CDS             316..1617
                     /gene="miaB"
                     /locus_tag="SFZ84_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG8203730.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEDLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            1601..2230
                     /locus_tag="SFZ84_001648"
     CDS             1601..2230
                     /locus_tag="SFZ84_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG8203731.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
BASE COUNT          871 a          308 c          389 g          698 t
ORIGIN      
        1 tatccttaat aagtttaatt aaaagtaaaa tttgctaaaa ttatagatta aaatgaaaat
       61 tcttaaggat ttagctatgg aattaaaatt ggcaagaact ttgattaatg aaaaacctaa
      121 aaatattagc ctagaaaaaa tcgaagaggc tatagaaaaa gaaggacaaa agttttttta
      181 ttttgataaa gataatacac acaaacaact cattgccctt gtaaatcatt ttgaaaaaaa
      241 aggagtaagc atttatcata gaaccgtaaa atacggactt gatgataatg attttatgta
      301 tgaggtacat attctttgag tgctaaaaaa ctttttatcc aaactttagg ttgtgcgatg
      361 aatgttagag attctgagca tatgatcgca gaattaacac aaaaagaaaa ttacgcacta
      421 acagaagata tcaaagaagc agatcttatt cttatcaata cctgttcagt gcgtgaaaaa
      481 cctgtgcata aacttttctc agaagtaggt ggttttgaaa aagttaaaaa agaaggtgct
      541 aaaataggag tttgtggatg tactgcatca catttaggaa atgaaatttt caaacgtgct
      601 ccttatgtgg attttgttct aggagcaaga aatatttcca aaatcactca agctataaaa
      661 actccaaaat ttatgggcgt ggacatagac tatgatgaaa gtgaatttgc ttttgcagat
      721 tttagaaata gtatttataa atcctatatt aatatctcca taggttgtga taaacactgc
      781 acttattgta tagtgccaca tactagagga gatgaaattt ccataccttt taacattatc
      841 tacaaagaag ctcaaaaagc tgttgaaaaa ggtgctaaag agattttttt gctaggacaa
      901 aatgtcaata actacggcaa aagatttaga aacgagcata aaaaaatgga cttttcagat
      961 cttttagaag aacttagcac catagaagat ttagaacgca ttcgctttac aagtccacat
     1021 cctttgcata tggatgataa atttttagaa gtttttgcca ataatccaaa agtttgcaaa
     1081 tccatgcaca tgcctttaca aagcggctca agtgaaattt taaaagctat gaagcgtggc
     1141 tatactaaag aatggtattt aaatagagct ttaaaactta gagaactttg tccaaatgtt
     1201 agcatttcta cagacattat tgtagctttt ccaggggaaa gtgaaaaaga ttttgaagaa
     1261 actatggatg ttttggaaaa agtgcgtttt gaacaaattt tttcttttaa atactccaaa
     1321 cgccctttaa caaaagccgc aaccatgcct aatcaaatcg atgaagaaac agcttcaaga
     1381 agacttagca ctttacaaaa tcgtcatagt gaaattttag atgaaattgt aaaaaaacaa
     1441 gaaaataaaa cttttaaagt tttatttgaa gaattaagag caggcaatag cattgctgga
     1501 agaacagata ataatttttt agttcaagtt gaaggtagcg aagaactttt agggcaattt
     1561 aaagaagtaa aaataactaa tgcaaagcgt atggttttat atggggaaat cgtttaaaat
     1621 ccattgctta acatatataa ttttcatctt gcaatggctt atttttttaa gctgtaaaaa
     1681 gcactataaa ggtgaaaaag ttgaccgtaa agctggtgtg atactttttt ggcatggaaa
     1741 attagcactc atgccttttg cgtttagaca ttatagacaa aaaaataaaa aagcctatgt
     1801 catgatctcc caccataaag atggagaaca aattgcaaaa atcatcaagc ttttcggtct
     1861 tgatactgta agaggaagca cttcaagggg tgctagcagt gcacttagag ctgcatttaa
     1921 agttttagaa caaaatgacg atatagttat cacgcccgat ggtccacgag ggccttatca
     1981 tagtatttca gatggttcta tcattttggc tcaaaaaaaa gaactaaaga taagaatttt
     2041 aaactatgaa gcaaatcgtt tttggaaatt taaaagttgg gataagatga tcttgccaaa
     2101 accttttagt aagattactt atagtctaag tgaacctttg gatattttat ctttagataa
     2161 agaaaaagct aaagaatttc taatgaaaca atttgataaa attagcttag ctgatcaatt
     2221 taaggaatga aatgttattt ttacttaaaa aaatatttcc acaact
//
LOCUS       DARGED010000158         2221 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.159, whole genome shotgun sequence.
ACCESSION   DARGED010000158 DARGED010000000
VERSION     DARGED010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.159"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..243
                     /locus_tag="SFZ84_001649"
     CDS             <1..243
                     /locus_tag="SFZ84_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8203732.1"
                     /translation="TTNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDF
                     AAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
     gene            complement(274..2160)
                     /locus_tag="SFZ84_001650"
     CDS             complement(274..2160)
                     /locus_tag="SFZ84_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203733.1"
                     /translation="MREENNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNL
                     DINIIKKSNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALK
                     RIIIFEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSY
                     NLHIANDFYEHYKEDILKLNKLNMQTIKNHNLMHGNDPKDALQGIEQFVYNLPQMITH
                     PSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIK
                     PDYVCMLERDEIVAECFNNDFKDFDKDIIFLIASLVHKKTISYLEKNQRKYILIIKGQ
                     PFARYLELDNYGYINGGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIH
                     ANLHNGDYERDLDKFSTTAYGGNGKVQSSEIWTLFRQIFENFIDFSKSKTYNCTEGGA
                     RIESAIEKPFKELCEDLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNF
                     KKECKKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQS
                     ILTPLYLKDIKDDSDKQNKLFAWIYAHESLMENIVELLEAQDKRLKIAILPLQDFLEK
                     KKAL"
BASE COUNT          710 a          331 c          310 g          870 t
ORIGIN      
        1 acaacaaatc ttgatcaaat cagagccgac attggttcag tgcaaaatca acttcaagtt
       61 acgataaaca acattactgt tactcaagta aatgttaaag cagctgaatc aaccataaga
      121 gatgtggact ttgcagctga gagtgcaaat ttttctaaat ataacatcct tgcgcaatca
      181 ggttcttatg ctatgagtca ggctaatgca gtgcagcaaa atgttttaaa acttcttcaa
      241 taatttctta gatgctttta tgcatctaag cttttaaagt gcttttttct tttctaaaaa
      301 gtcttgcaaa ggtaaaatag cgattttaag tcttttgtct tgagcttcta aaagttctac
      361 gatattttcc atcaaagatt catgcgcata aatccaagca aaaagtttat tttgtttatc
      421 ggagtcatct ttgatatctt taagatataa aggcgttaat atactttgtt cgtgatgtaa
      481 agtagggcct aaaatttctt gcaaaaagag atatttttta tttgaaagtt tttctttgat
      541 tttgtctata ttctggttta tttgttcaag agagagcttg ttttttccat gggtaagatt
      601 gtgaatttgt ttttgaactt ttttacactc ttttttaaaa ttcaaggata aattcatatt
      661 ttttttgatt ttttgataga tttttaatcc gagttttact tgttctttag tatttaaaac
      721 ttgtaatttt ttaaattttt tatctttttt attttcgagt aaatcttcac aaagttcttt
      781 aaaaggtttt tctatagcgc tttctatcct agcacctcct tcagtgcaat tataagtttt
      841 acttttgcta aaatcaatga aattttcaaa aatttgtcta aaaagtgtcc aaatttcaga
      901 actttgaact tttccatttc ctccataagc tgtagtgcta aatttatcta agtccctttc
      961 atagtctcca ttgtgtaaat tagcatggat aaaaccttga gagtgtgttt gcccatcttt
     1021 ggcataagcc aaatcctgac ctatgagaat gatgttttta tgtcctaaat tttcagccag
     1081 ttcataagcc atgtgagata cactcatacc tccgttaata tatccataat tatctagttc
     1141 caagtatcta gcaaaaggct ggccttttat gattaaaatg tattttcttt gatttttttc
     1201 aagataagaa atggtttttt tatgcaccaa agaagctatt agaaaaatga tgtctttatc
     1261 aaaatcttta aaatcattat taaaacattc agctactatt tcatcgcgtt ccaacataca
     1321 aacataatca ggctttatac catgtttagc taaaatagga taagaagaat ccgcacaaaa
     1381 aattgtagct ttattagcat acttttttaa caaaggaagt tgtttagtaa gagatggtcc
     1441 tgtagaaaca atgatagctg tatcacttat accctttctt ttagaaagca attctttata
     1501 actaggatga gtgatcattt gaggaagatt ataaacaaat tgctctatgc cttgaagagc
     1561 atcttttgga tcattaccat gcataagatt gtgatttttg atggtttgca tattgagttt
     1621 attaagtttt aaaatatctt ctttatagtg ttcataaaaa tcattggcaa tgtgtaggtt
     1681 ataagaacga taaaacaaat ctcctatcaa acgaaaaact ttatccattt taggaagatt
     1741 aatatcatca tgatgtaaaa taatgagtcg ccctaagctt aaatctttgc taaaatctat
     1801 gaaatttaaa gccaaaaaga taagttctaa ttctttttca aagatgatta ttcttttaag
     1861 tgcttgattt tgaagtagaa ttttatataa aattccattt ccaaaaccat aaaaaaaaag
     1921 cacaggatag cgtgtaaaat ctttaaaata ttctaaattt ttttcaagtt ctttgatggg
     1981 atcttgatac atttttttta aattgctttt ttttatgata ttgatatcaa gattatcttt
     2041 tccttgagtg aaagtaaatt ctctaagctc ttttagatcc tcaagttttt tgcgtaagtt
     2101 gttatactca aaaccgctta aagcttttaa atttttgtta aaattatttt cttctctcac
     2161 tttctcaccc tttccatcca tttatctaat tttctttcct tgagtttttc ttctaaagga
     2221 a
//
LOCUS       DARGED010000159         2163 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.160, whole genome shotgun sequence.
ACCESSION   DARGED010000159 DARGED010000000
VERSION     DARGED010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.160"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..798
                     /locus_tag="SFZ84_001651"
     CDS             <1..798
                     /locus_tag="SFZ84_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8203734.1"
                     /translation="NIKKLPNDLERYYSQLSNYSWNFIENHGISLFNTAWINEVYNPF
                     VNDIAPYYPFNDESVADLSMDSFKTFFGRNGTLNSFYKKYLNNVLVKRKNNYSINSQF
                     ASKLNFSKEFLDFITNAGNLSSLILNGNDNIKVNFTIQSLDLSADFSFIKLGYDNKNI
                     QYDHTLNQTLQIVAEKFNNGTSLNFTAYNYSNPNLNYTKSYKGEWAWYKFIKDNKSNS
                     IYSIIFNNNKNLYFDFEIINGASELNNIVYILNNLKIVENITGVNKQ"
     gene            795..1694
                     /locus_tag="SFZ84_001652"
     CDS             795..1694
                     /locus_tag="SFZ84_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEG8203735.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQNSKLNNDYSPI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENMFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
     gene            complement(1698..>2163)
                     /locus_tag="SFZ84_001653"
     CDS             complement(1698..>2163)
                     /locus_tag="SFZ84_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203736.1"
                     /translation="DWTIDLNKYDFAYDEEGRIIWALYNDIEKGKLKDPRDIDSTPES
                     RNKFDDAMDGYENGMVTRFDVDIRNERDERSAKLTMDTLVLSAKLAALTPPQGYPNAP
                     YYFTPERLEWIYKRGYLDKLLDPRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
BASE COUNT          850 a          272 c          299 g          742 t
ORIGIN      
        1 aacataaaaa aattacctaa tgatttagag agatattata gtcagctttc taattattcg
       61 tggaatttta tagaaaatca tggtatttct ttatttaata ctgcttggat taatgaagtg
      121 tataatccat ttgttaatga tattgcacca tattatcctt ttaatgatga gagtgtagca
      181 gatcttagta tggatagttt taaaacattt tttggaagaa atgggacatt aaatagtttt
      241 tataaaaaat acttgaacaa tgttttagta aaaagaaaaa ataactattc tatcaattct
      301 caatttgctt caaaattaaa tttctctaaa gaatttttag attttatcac caatgcaggc
      361 aatctctcta gtctcatact aaatggtaat gataatataa aagttaattt tactattcaa
      421 agccttgatt taagtgcgga tttttccttt ataaagcttg gctatgataa taaaaatatc
      481 caatatgatc atactcttaa tcaaacccta caaattgtag cagaaaaatt caataatgga
      541 acaagtttaa attttacagc ctataactac tctaatccta atttaaatta tacaaaatca
      601 tataaagggg aatgggcatg gtataagttt ataaaagata ataaaagtaa ttctatatac
      661 agcattatat ttaacaataa taaaaactta tattttgact ttgaaattat taacggtgct
      721 agtgaattaa ataatatagt ttatatttta aataatctta aaatagtaga aaatattaca
      781 ggggtaaata aacaatgata gaaaaagaag aaataggaat tgctattgag aattatgacg
      841 aatgtattag tggttctaaa acatttgtat ttaacacaaa gggtggaact ataggaagcg
      901 gtgatgattg cacttttcgt attcaagata aactagaaca aatcaaaaat acccatgcca
      961 tagtatctta tgaagaagga tcttttacaa ttgcggcttt tgaagattct gacatttatt
     1021 ataataagtc cttttctaga atgccaagtg gctatgaaat aataatcagc ataggcgata
     1081 tttttaaaat cggtaattta gaatttagat ttgtggatgc aaaaagcatt gaagcaagca
     1141 ttaaagaaaa taaaaaatac ttagaagata ttgaaaaacg caatcatttt gatgaaattg
     1201 aaattaaacc tagaggaaaa acaagtataa attttgacaa aaacaaagag ttaaaagaga
     1261 ttttagaaaa taatgattat aaatttatcg aagaagaaaa ggcagatgat agctttttaa
     1321 aagaaataat tcaaaaaaat ccaaattcat tagaatatga aaatgtttta aaaagtttgg
     1381 taaaaaattt aaaagatatt aaaacaaaac aacaaaactc taaattaaat aatgattatt
     1441 ctcctatcag tattaaagat tttgaaagta ttattaataa tataccctta atcaaatcca
     1501 caagattgat caatatttta gcccttagcc taatcgcaaa agaattatat actccaatat
     1561 ttgaagaaat ggaagaaaat atgtttatta aatatattga agctgccata caaaacaata
     1621 tcaaagaaga taagattctt tttgaaaatc ttaccatcaa agcattggaa aagtatatta
     1681 aagattttga gtgattttta ctctttgata ttatgctctt tagcataagc tcttatctta
     1741 gctcgaagtt cttgcggaaa attatatcta tatatggcag gaattcttgg atcaaggagt
     1801 ttgtctaaat atcctctttt ataaatccat tccaatcttt caggtgtaaa ataataaggg
     1861 gcattaggat agccttgagg tggggttagg gctgctagtt tagcgcttaa tactagagta
     1921 tccatagtca gtttagcaga tctttcatct ctttcgtttc taatatctac atcaaatcta
     1981 gttaccattc cattttcgta tccatccata gcatcatcaa atttatttct actttcagga
     2041 gtagaatcta tatctcttgg atcttttaat ttaccttttt caatatcatt atataaagcc
     2101 caaatgatcc tgccttcttc atcataggca aaatcatatt tatttaaatc aatcgtccaa
     2161 tct
//
LOCUS       DARGED010000160         2157 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.161, whole genome shotgun sequence.
ACCESSION   DARGED010000160 DARGED010000000
VERSION     DARGED010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.161"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..857
                     /locus_tag="SFZ84_001654"
     CDS             <1..857
                     /locus_tag="SFZ84_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HEG8203737.1"
                     /translation="KIELSQLKKEHYKVLDFHLRKITPQAFLEIVEIHLAESCNLNCF
                     GCNHFSQIAEKEFPDIEIFKKDMQRLSEISKGIVGTFRLMGGEPLLNPNCIQFFDITR
                     YFFPKSAIWLVTNGILLDKQNEDFWNSCQRNKMQIRPTKYPIKINWDLIKDKCDQYDI
                     PLIFFNNGELEKTSWKFSLDPSGNCDNYHSFTNCSMANHCVQFKDGKLFTCTFPAHVQ
                     HFNKKYGNHFEVCEFDFIDIYKAKDYQEILFFLSKPIPFCRYCKVSQWAEIGKWRSSN
                     KTKHEYLI"
     gene            867..>2157
                     /locus_tag="SFZ84_001655"
     CDS             867..>2157
                     /locus_tag="SFZ84_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8203738.1"
                     /translation="MIKKILLITPELEYTGALNSFKRICEVLLNNKYAVDIWTYNEGP
                     YISEFDKLGVYVEVISEDDIDSKWVHERISKYSLVIANTIVVYKCVELIQNLTPVVWY
                     IREAENLPDFFWKPERKLALEKAKKLYVVSEYAKDFIIHNYNKNVEVLHNYVDDVFYE
                     KHDDFLKQIKSDKLKFLALGTIEKRKGYDVLLQAFIDLPVDIRDQCELHFAGRFWEGA
                     KDFFPKILSLAKKFPNIFYHGELRDRKKIHSLIFQCNVMVVPSRDESCSLVALEGAMM
                     SKPLILTENIGAKYILDENSGWLVKTGSVDSLKNAFIQAYKNKNKLDAMGANSRNNYL
                     QTSTYEIYEKNILKMVRDEICKNQYLYRINQENYVLFSFDIFDTLISRNIAKPSAVFL
                     IMKQKMRNMDFPLNLVKNFDRIRVEVEQYYYRNVCKNK"
BASE COUNT          795 a          228 c          369 g          765 t
ORIGIN      
        1 caaagataga attatcgcaa ttaaaaaaag agcactataa agtattagat tttcatttaa
       61 gaaaaattac acctcaagct tttttagaga ttgttgaaat tcatttagcc gaatcatgta
      121 atttaaattg ttttggttgt aatcattttt cacaaatagc tgaaaaagaa tttccagata
      181 tagaaatttt taaaaaagat atgcaaagac tttcagaaat atctaaaggt attgtcggaa
      241 cttttagatt gatgggtggc gaacctcttt taaatcccaa ttgtatacag ttttttgaca
      301 ttacaagata tttttttcca aaaagtgcca tttggttggt aactaatggt attttacttg
      361 ataagcaaaa tgaggatttt tggaattcat gccaaaggaa taaaatgcaa attcgtccaa
      421 caaagtatcc tataaaaatt aattgggatt tgattaaaga taagtgtgat caatatgata
      481 tccccttgat attttttaac aatggagagt tggaaaaaac ttcttggaaa ttttctctag
      541 atccttctgg aaattgtgat aattaccata gttttacaaa ttgtagtatg gcaaatcact
      601 gtgttcagtt taaagatgga aagctattta cttgtacctt tcctgcacat gtacagcatt
      661 ttaataaaaa gtatggaaat cattttgaag tttgcgaatt tgactttatt gatatttata
      721 aagccaagga ttatcaagaa attttatttt ttctttctaa gcctattcct ttttgtagat
      781 attgcaaggt atcacaatgg gcagaaattg gaaaatggcg ttctagcaat aaaacaaaac
      841 atgaatattt aatttgaaag tgtattatga taaaaaaaat tcttcttatt actccagaac
      901 tagaatatac aggagcttta aatagtttta aaagaatatg tgaagtatta ttgaataata
      961 aatatgctgt agatatttgg acctataatg aaggacctta tattagtgag tttgataaat
     1021 taggcgtata tgttgaagtt atttcagaag atgatattga ttctaaatgg gtgcatgaaa
     1081 gaatttcaaa atattcattg gtcatagcaa atactatagt agtatataaa tgtgttgagt
     1141 tgatccaaaa tttaactcct gttgtttggt atattagaga ggctgaaaat cttcctgatt
     1201 ttttttggaa gccagaaagg aagttggctt tagaaaaagc taaaaaactt tatgtggtta
     1261 gtgagtatgc aaaggatttt ataattcata attataataa aaatgtagag gttttacata
     1321 attatgtaga tgatgttttt tatgaaaagc atgacgattt tttaaaacag ataaagtcag
     1381 ataaattaaa atttttagct ttagggacta ttgaaaaaag aaaaggttat gatgtgctgt
     1441 tacaagcttt cattgatctt ccagtagata taagggatca atgtgagctt cattttgctg
     1501 gaagattttg ggagggagct aaagattttt tccccaagat tttatcatta gccaaaaaat
     1561 ttccaaacat tttttatcac ggggaattaa gagatagaaa aaaaatacac tctttgattt
     1621 tccaatgcaa tgttatggtt gtaccatcta gagatgaatc gtgctctttg gttgcattgg
     1681 aaggtgcgat gatgtctaaa ccattgatat taactgaaaa tattggagct aaatatattt
     1741 tagatgaaaa tagtggatgg ttggttaaaa ccggtagcgt agattcttta aaaaatgctt
     1801 ttatacaagc gtataaaaat aaaaataagt tagatgcaat gggtgcaaat tctaggaata
     1861 attatcttca aacatccact tatgaaattt atgaaaaaaa tattttaaaa atggttcgag
     1921 atgaaatttg taaaaatcaa tatttatatc gtattaatca agaaaattat gtactttttt
     1981 cttttgatat ttttgacact ttaatttcta gaaacatagc taaacctagt gctgtatttt
     2041 taataatgaa acaaaaaatg agaaatatgg attttccttt aaatttagtt aaaaattttg
     2101 atagaataag agtggaggtt gagcagtatt attatcgaaa tgtgtgtaaa aataaat
//
LOCUS       DARGED010000161         2141 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.162, whole genome shotgun sequence.
ACCESSION   DARGED010000161 DARGED010000000
VERSION     DARGED010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.162"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..989)
                     /locus_tag="SFZ84_001656"
     CDS             complement(<1..989)
                     /locus_tag="SFZ84_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203739.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CRDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPC
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYANTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENI"
     gene            complement(986..1318)
                     /locus_tag="SFZ84_001657"
     CDS             complement(986..1318)
                     /locus_tag="SFZ84_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203740.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            complement(1496..>2141)
                     /locus_tag="SFZ84_001658"
     CDS             complement(1496..>2141)
                     /locus_tag="SFZ84_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8203741.1"
                     /translation="KYNFAFHDMKHIKEANDKYILMEEVEDTIIYQNALIYDYILSAD
                     NPNSQIIKYLVNRGAKFEVHKDGFGWTPMHFWVMQNNYELLELAIKGGANVDMQTLLD
                     PKSEYNETLLFEAVSEPETYRVTQLLIELGANVNFATPTTPLDDAKGSRNKKLLKDAG
                     AMTSEQIRKKFNLPAYDSSHCEIDGKTDMDLLGKYLDEYSKLLNDAIKKAKESE"
BASE COUNT          718 a          323 c          240 g          860 t
ORIGIN      
        1 tgtatgtttt cttcttctgt gttttttgga attttgttgt aattaataag ataataatta
       61 agtctatctt tgtttaattc ttgattgtca agttcattta aaaactcttt agaataataa
      121 tttaaaaagt aagtatttgc gtattcttct atatattctt taaaacttct tttatgaatt
      181 aatttatctt gattaatggg ataagatttt aaagtattat ttttagaatc taaagtatga
      241 tcatatccta caaaaaaata agaaaaatcc ataaaagcat aatcagcact gatgccttta
      301 caaagattta aaaacatatt ttcaagttct aaaatgattt tatcttcttt gcttaaattt
      361 aattcttttt gtatctcatc ttgacttttt ggagtaaaag tatgattgat tctgtgatta
      421 taattgttaa ttaaatattc taagctttca tcactaaaat taaagcttag ctcaagtgaa
      481 gaattaaaat aaatatcata tttattaaag cagggtgcta aattatcttt ttctataaaa
      541 atatcaattt gattttgaga aaaattttct cctttttcat cccaaaaagg aaaattagga
      601 gaaagatttt taagcatacc aatctctgtc aaatcatttt tttgataata tcgatgtaaa
      661 atatatttac ttttatccct gcataaacga ttataaaatt gagtataatt tgaaggcaaa
      721 aaatcaagcc attcatcatc accatgtaga tttatgcctt caaattgatc aacactaaaa
      781 taagctttaa actcttgcat agcttttaag gtattttcta aatgcttatt ataaaatttg
      841 tctttattgg cttgtttaaa ttcaaaccaa tctttggcat ttaaacgctc gccttttaag
      901 ctccaagcat taagatattt ttcatcacta aaagttttag tagaaaaaag ataaaagctt
      961 actcgattag agcttaatgt ttgtttcatt taaaatcttt taaagcatat aaaaagtctt
     1021 taatatcact tacttgatct tctacccaat cttctactgt ataatcttca tcacaatcgc
     1081 tatcttcatt ataataatct cccccttcaa agtcagcagg atcgtcataa agttccattt
     1141 ctatatgttc taattcaaat tccaaatcat ttataaaatt tcgaagattt acgccattaa
     1201 attcactttt atcatattct aaaacagcaa taagattagg cggcaaggta actttatatt
     1261 ttgcatcaac ttttaaattg ccattttcta ctaaattttt atattcatag cttaaaatgc
     1321 tacttataaa agctcttcgt tcgtattttt ttaaaccata taaagcatct tttaaataat
     1381 tatcattttt aagatagtat ttaaacactt cttgtatata ttcatcatcc aataattttt
     1441 tatttttcat tatctttcct tataatttat tttagcaaaa ttaatttcta ttccctcatt
     1501 cactttcttt agcctttttt atagcatcgt ttaaaagttt ggaatattca tcaagatatt
     1561 tacctaataa atccatatca gtttttccat caatttcgca atgagaagaa tcatatgctg
     1621 gtaaattaaa tttctttctg atttgttctg aagtcattgc tcctgcatct tttaaaagct
     1681 ttttatttct agatcctttt gcatcatcta aaggggtggt tggggtagca aaattcacat
     1741 tagctcctag ttcaattaaa agctgtgtaa ccctataggt ttcaggttcg cttacagctt
     1801 caaataaaag ggtttcattg tattcgcttt ttggatcaag caaggtttgc atatctacat
     1861 tagctcctcc tttaatagct aattctaata attcataatt attttgcata acccaaaaat
     1921 gcataggagt ccaaccaaag ccatctttat gcacttcaaa tttagctcca cgattgacta
     1981 gatacttaat gatttgagaa tttggattat cagcacttaa tatataatca tagattaggg
     2041 cgttttgata aataatggta tcttctactt cttccattaa gatatattta tcattagctt
     2101 ctttgatgtg tttcatatca tgaaaagcaa agttatattt a
//
LOCUS       DARGED010000162         2090 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.163, whole genome shotgun sequence.
ACCESSION   DARGED010000162 DARGED010000000
VERSION     DARGED010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.163"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1190)
                     /locus_tag="SFZ84_001659"
     CDS             complement(<1..1190)
                     /locus_tag="SFZ84_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8203742.1"
                     /translation="MFKKIFDFVKSRLFITAFLLCCIFLLSILFWFWGSLVAFNDIYI
                     FSSSFLRFSIILIIWLIVFLFFLLKPIINFISSLKSEKRLKFKVLKKEADEFIYKSKR
                     NFFLSLKDAKETWKNDLKTKNLPLIIIIGNEGAGKSTFINYSDIEYPLSDSLESYKKF
                     HKSTRNFALYVSKKGALLDTEGNYFSQEEFFKPTSSDEIPEDDIDKNRDFLIKKNIWK
                     KFLTFLNKNFFHSKLNGIILVVDTVIFLNNPKEYSKNLIRYLTKRVNECEKTLNLKLP
                     IYIVFSKLDLIEGMKEYFDIFDKKISDKILGLSFDKILSEEFLNNEFKELSDSLLCSL
                     MSKNSHIYNIENKNKSYLFLKQLDNLFALAKTFILEVQEENKLKNNSYLRGVYFVSAY
                     QENIP"
     gene            1308..1823
                     /locus_tag="SFZ84_001660"
     CDS             1308..1823
                     /locus_tag="SFZ84_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp family type VI secretion system effector"
                     /protein_id="HEG8203743.1"
                     /translation="MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEV
                     SHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTA
                     TSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
                     SGSDDWREGKA"
BASE COUNT          783 a          271 c          264 g          772 t
ORIGIN      
        1 ggaatatttt cttgataggc actaacaaaa taaactcctc taagataaga attattttta
       61 agcttatttt cttcttgcac ttccaaaata aaagtctttg ctaatgcaaa taaattatca
      121 agttgtttta aaaataagta gcttttattt ttattttcta tattataaat atgggagttt
      181 ttactcatca aggaacataa taatgaatca cttaattctt taaattcatt atttaaaaat
      241 tcttcactta agattttatc aaaagataat cctaaaattt tatctgaaat ttttttatcg
      301 aaaatatcaa aatactcttt catgccttcg atcaagtcga gttttgaaaa aactatataa
      361 ataggcagtt ttaaatttaa agttttttca cattcattta ctctttttgt tagatatcta
      421 ataagatttt tggaatactc cttaggatta tttaagaaaa ttacagtgtc aacaactaaa
      481 ataattccat ttagtttgct atgaaaaaaa tttttattga gaaaagtaag gaattttttc
      541 catatatttt ttttaattaa aaaatctcta tttttatcta tatcatcttc gggtatttca
      601 tcgctacttg taggcttaaa aaattcttct tgtgaaaaat agtttccttc tgtatctaac
      661 aaagcacctt tttttgatac ataaagtgca aaatttctag tagacttatg gaatttttta
      721 taagactcta aactatcact aagtgggtat tcgatgtcag aataattaat aaaagtgctt
      781 tttccagctc cttcatttcc tatgatgata attaagggta aattttttgt ttttaaatca
      841 ttcttccatg tttctttggc atctttaaga gataaaaaga agtttctttt agatttgtaa
      901 atgaactcat cagcttcttt ttttaggact ttaaatttta atcttttttc actttttaaa
      961 gaagatataa aatttataat aggctttaat aaaaaaaaca aaaaaacaat aagccaaatt
     1021 atcaaaataa tactaaatct taaaaatgaa ctactaaaaa tatatatgtc attaaaagct
     1081 actaaagaac cccaaaacca aaataaaata ctcaaaagaa aaatacaaca aagcaaaaaa
     1141 gcagttataa ataatcttga tttcacaaaa tcaaatattt ttttaaacat cattattcct
     1201 tagtaaagta aaaacaaatt aatatgcaaa tattttgcaa aaatttaata gattaagatt
     1261 aaaatgatac aattttgaat gttaaaaaaa attaaaggag tttttttatg gctgaaccag
     1321 cgtttataaa aattgaaggt tccacacaag gtttgatttc aagcggtgca tctactgaag
     1381 cgagtattgg caatagatat aaatcgggtc atgaagatga aatcatggct caagaggtat
     1441 ctcatattgt aaccgtacct gttgatcagc aaagcggaca accttctgga caaagagttc
     1501 ataagccttt ttcttttact tgctcattaa ataaatctgt gcctttgcta tataatgcac
     1561 ttaccaaagg agaaagactt ccaacagtcg aagttcattg gtttagaacc gcaacaagtg
     1621 gcggatctga acattttttt actacaaaat tggaagatgc aattattaca aatattgaat
     1681 taataatgcc aaatgcgcaa gagtcaagta atcatgataa aaccgagctt ttaaaagttt
     1741 caatgagcta tagaaaagta gtttgggaac atactgctgc tggaactagc ggaagtgatg
     1801 attggagaga gggcaaagct taattataat ttatcttaaa taatcctgac taaaatacat
     1861 aattatagtt gggattgtat cgtgaattat atccatggca taattatgat acgaccttat
     1921 acttatttgt actaataatt tgcataatta aagcttgttt ttatattatt tttatccttt
     1981 agatttgcat ttgattttta ttctagctgt aaaataattt ttatttaatt ttactcataa
     2041 caaataaatt gatatttaaa aatttagtat atttattcta tatgtgttaa
//
LOCUS       DARGED010000163         2062 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.164, whole genome shotgun sequence.
ACCESSION   DARGED010000163 DARGED010000000
VERSION     DARGED010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.164"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            74..>2062
                     /locus_tag="SFZ84_001661"
     CDS             74..>2062
                     /locus_tag="SFZ84_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG8203744.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSIAPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILC"
BASE COUNT          555 a          286 c          449 g          772 t
ORIGIN      
        1 taaacatctt tctatataat ttaatctata aatctgctat tctttgaaaa tattttattt
       61 tcttaggaga aatatgactc agttaagtac taaaatttta tggttgtttg ttgcaacttt
      121 aggcgctatt tgttttggtt atttagcttt acaaaatggc gaaagtgtat cagcgattta
      181 tttggtggtt gctgctgtat gtatttatat gataggatat agattttatg ggcgttttgt
      241 agcttataag gttttagaac ttgataaaaa tcgtgcaaca ccagcacttg tagaaaatga
      301 tgggcgtgat tttgtgccca caaataaagc tgtattattt ggacatcatt ttgctgctat
      361 tgcaggagca ggtccattag taggacctat cttggccgct caaatgggat atttgccttc
      421 tatgctttgg attttagtag gaggagtttt agcgggtgct gtgcatgatt ttgttgttct
      481 ttttatatct actcgtagaa aaggtagaag tcttggcgag atgattaagg atgagatggg
      541 taaatttaca ggtggagttg ctatggtggc gatttttggc attatgctta ttattattgc
      601 cattttagct atggtggttg taaaagcttt agcagaatct ccatggggtt tatttactat
      661 cgcaatgact attcctatag caatatttat gggcatttat atgcgtttta tccgtccagg
      721 tagagtaggg gaggcttcta taataggttt tgtgctttta attttggcta ttcattatgg
      781 tagcgttata gctgctgatc cttattgggc taaaatattt actttagaag ctccaacttt
      841 ggcaattgtt atgatggctt atggttttat tgcttctgtt ttacctgtgt ggtttttact
      901 tgctccaaga gattatcttt caactttttt gaaaatcggt gttattgtgg taatggctgt
      961 agctattgtt ttggttgctc ctgatttaca aatgccaaaa gcaaatactc agtattttga
     1021 tggaacaggt ccagtatttg caggtggagt gtttccattt ttatttatta ccattgcttg
     1081 tggtgcgatc agtggttttc atgctttgat ttctagtgga actactccta aaatgcttga
     1141 aaacgaaact catactttgg ctgttggata tggctctatg cttgctgaga gtgctgtggc
     1201 gattatggct ttaatttgtg cttgtatttt acatccaggt ctttattttg ctataaattc
     1261 aagctctgct ttgataggaa cagatgttgt aaatgtagca caaactattt caagttgggg
     1321 atttagtatt gctcctgaag aaattactac tttaaccaca aatataggag agcatactat
     1381 actttcaaga acagggggag ccccgacttt tgctataggt gtagctttga tcttgcatga
     1441 actttttggc ggcgtggatt tgatggcttt ttggtatcat tttgctatat tgtttgaagc
     1501 tttatttatt ttaacagcgg tggatgctgg gacaagggct tgtcgtttta tggtgcaaga
     1561 tatattgggt aatgtttata aacctttagg agatattcat aattatccag ctggactttt
     1621 ggctacggct ttaagtgttg caggttgggg atattttctt tatcaaggcg ccattgatcc
     1681 taagggagga atttatacac tttggcctct ttttggcgtg agcaatcaaa tgcttgcagg
     1741 tatggctttg cttcttgcta caactatact tgtaaaaatg ggcaaggcaa gatatacttg
     1801 ggttacttta gtacctgcgg tatttgtctt agtggcaact ctgtatggag gaattcaaaa
     1861 aattatgcct tatgaagaag gcaataaaat agcaaatgcg gtaagtcatg tagccgccgt
     1921 tagcatacaa agtcaaaaaa ttaaagattt agaatttaaa ttaaataata ctaaagatga
     1981 aaaagaaatt tctacaatta gaaaagaaat ttcaatagcc actcaaaata aagttggaaa
     2041 tttacttaat gcaattcttt gt
//
LOCUS       DARGED010000164         2060 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.165, whole genome shotgun sequence.
ACCESSION   DARGED010000164 DARGED010000000
VERSION     DARGED010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2060)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2060)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.165"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(159..1406)
                     /locus_tag="SFZ84_001662"
     CDS             complement(159..1406)
                     /locus_tag="SFZ84_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8203745.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(1403..>2060)
                     /locus_tag="SFZ84_001663"
     CDS             complement(1403..>2060)
                     /locus_tag="SFZ84_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8203746.1"
                     /translation="IEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALKEYQLII
                     LDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKPYNPKEL
                     QARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILSYLIKKE
                     GGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGIGYKLTQ
                     "
BASE COUNT          715 a          365 c          234 g          746 t
ORIGIN      
        1 atgtaggatt cgaacctacg accaatcggt taacagccga ctactctacc gctgagctaa
       61 tccggaatat ttaaaagtaa aatgtgatta tagtgaaatt aaaaaacttt gtcaagggtt
      121 ttttcacaaa aatgcatttt ttatgtaaaa aaattaattt actccttaac aataacactt
      181 tttaaatttc taaaataaaa caaatttacc ccatcttcat ataaataatc aagcttcatt
      241 ccatgtgttt ctaaaatagt atttacaata taaagcccta atccaaaact tgatttttgt
      301 tttgatcctt gagtaaaagc ttgagtatag tattctaaag tattgttaag ctcagggcca
      361 cgatttttaa aacaaatata atcatctata atatcaattt gcacaaaccc atcttcagaa
      421 tgtttaatac cattatctat catattttta atcgccgtag taaaaagttt aaaatccaca
      481 tttacaaaaa aactttcttc cataaaaata cgtatattgc tatcatctcg cattgcaatt
      541 tctttggctt catctaaaac atctaaaata ttgtattttt ttctatttat aaaagcagcc
      601 cctgaagtaa tttgctcaat agcagcaaat tcattaatta aaatttcaag tctagtaaaa
      661 accccattta agcgctcttt atatttatta tcttctatca tttctaaagt taaaagccct
      721 ttagtaatag gagttttgag ttcatgcata atatttctta aaaaaaactg acgagattgg
      781 tttaactttc gaatttgaac aatagcttga taaaaagctt cacttacttg tgaaatttca
      841 tccaccccag tgcttacatc ttctatatca ccaagctttc cttgggcaaa tttatcaatt
      901 tgttttttaa gtcttttaag tggttttaat tttttaaata tataaatata aagcaataca
      961 agaatacaaa tcacagctac agctatagct ttgataataa aatacctata ggtttgataa
     1021 tcttgatcct tataaagata aacctttcca tcataaataa tatttaaata cacctgtcta
     1081 ttataagaaa taatctcgat taagccattg ttaacctcaa ccctagctaa aacatcacct
     1141 ctaaaaagaa ttttacggat ctgctttgct tctgttatct catccatttt attataattt
     1201 tttgtctgct cttcaaattc tttttcactg ataactcctg caaaatttaa gagccttgca
     1261 ttagctatca aagaatattt tgtgtttaat tctctagtat aattttgctg atcgtattct
     1321 ataagccaca aaaagccaag tataacacta accccagcaa aaataaaaat aaaagttata
     1381 gtataaaaaa tcgaagattt attcattgag taagcttata acctattcca cgtatagagt
     1441 gaatatattt tggagttttt ggatcatctc ccatcttttg acgaattcta ctgataataa
     1501 catctatact tttattacta gaatcctcac taatagaaga acaattataa acaagctctt
     1561 cacgacttac cactccaccc tcttttttaa tcaaatagct taaaatatca aattcagcat
     1621 tagttaaagt aagctcttgt cctttcatgg taataatatg cttatattga tcataaacaa
     1681 gatcttttac gctttttgct atggcgcttt ttgtatttga aatacgtctt aaatgacttt
     1741 taatgcgtgc ttgtaattct tttggattat aaggttttgg taggtaatca tctgctccaa
     1801 gctctaaagc attaacctta tctgtaatat catgtcttgc gcttgaaaca ataataggcg
     1861 tatcatactt tttacgaatc tcttcacaca cttcaagccc atcaagccct ggcaaagaaa
     1921 ggtctaaaat gataagctga tattctttta atgcaagctt agaaagacct atataaggtt
     1981 catgagctat atcaactttc atatcaaatt tttccaaata ttcagctgta atttctgcta
     2041 attctaaatc atcttctatc
//
LOCUS       DARGED010000165         2060 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.166, whole genome shotgun sequence.
ACCESSION   DARGED010000165 DARGED010000000
VERSION     DARGED010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2060)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2060)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.166"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..594)
                     /locus_tag="SFZ84_001664"
     CDS             complement(<1..594)
                     /locus_tag="SFZ84_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG8203747.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQ"
     gene            complement(605..1255)
                     /locus_tag="SFZ84_001665"
     CDS             complement(605..1255)
                     /locus_tag="SFZ84_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG8203748.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            complement(1252..1878)
                     /gene="nth"
                     /locus_tag="SFZ84_001666"
     CDS             complement(1252..1878)
                     /gene="nth"
                     /locus_tag="SFZ84_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG8203749.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            1959..>2060
                     /locus_tag="SFZ84_001667"
     CDS             1959..>2060
                     /locus_tag="SFZ84_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8203750.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISD"
BASE COUNT          681 a          307 c          338 g          734 t
ORIGIN      
        1 ttgatatttg atagctaaaa gccttgcaaa aactcctata aaaagagtta aaagtgtgca
       61 aactagggca ttaagctcaa gccaaattat tagagaataa tagattgctc ctgcaattat
      121 ggcaattcct gcataaattt ctttttgaaa caccaagggg attctcatac ataaaatatc
      181 tcttaaaatt ccaccaaaaa caccggtaat tacagcggca gcaacggcta tgataaagcc
      241 atggttttga tctatagcta tttgagctcc aagtatgcta aaaacaacaa gtcctatagc
      301 atcaagagtt agaaataaag tttcaagttt ggttactacg cgcggaattt ttgtggctac
      361 aagggcgcaa aaacagatta aaataatata ttcaggatgt ttaacccaag ttaaaggata
      421 atgtcctaaa agcacatctc gtatgcttcc gcctccaatt gctgttacga gagcaataaa
      481 aataactcca aaaagatcca ttttgtggcg tcctgcagct aaagctcctg tcattccttc
      541 tgcggaaata cctatgatat aaagagtggt tatcgtaaga gcatttatct ccataattta
      601 taccttaaaa tttatcacaa tttatttgat actgtttaat attttcatca tttacttcgt
      661 ggtttggtgc ttgatagcat tctttaaatt tcggagtttt aataattttc acataaaaac
      721 ttggtatagc aatacggttt ttaatgtatt gtggttcttt atcgtaaagt actaaattta
      781 aaacttcgat actttgaaat tctaaagcta aatttctttc tctttgttcg atttcattcc
      841 aaattttatt atttatttgt gcattttgtg gggtaatatt actcattaaa aatactgaat
      901 tttgagcagc tttactaaag ctaaaagaag cattgggtgc agtgtgtcct cgtgtgtaac
      961 cactgttttt ataattactc caagtagtgc ggtatttttt aggaatattt gtatcatctt
     1021 caaagcgagg gcgttttttg atttgtctat ctttcaaatt tgaagcttct accttataag
     1081 caacagcttt tgtgcctttg agtttataat catagcaatt tagataaaaa aacttatcta
     1141 agatttgcga gcaatttata ttgttaaaat aagaagaaaa atcagcacta ggcttgtaag
     1201 gttctaaggc aaaaatatta agagatatag tgagtaaaaa gatgaaaatt ttcatttaag
     1261 ttccttatct ttacttttgc aaagatgatt taaaaagcat tctttacata aaggtttttt
     1321 agctttacag gtgtaacgtc caaaaagaac catggcttga tgaagatagt taagattatc
     1381 tttaaatgtg cgtgttaaat cttcttctgt agcttctgga gtttttgctt tgctaagtcc
     1441 taagcggtga gaaactctaa aaacatgagt atctacagcc atgaaatttg ctccgcacca
     1501 ttctattaaa actacatgag cggttttttg tcctacgcct gctaaggatt ttaaattttg
     1561 ttcatcaagg ggaatttctc cgtcaaaatt ttcacaaact gcttttgcca tttttataag
     1621 attttgtgct ttattattaa aaaatgaaca agtttgtata taggttttaa gacttgataa
     1681 atttgcattt gcaagggatt taatatcagg ataagcttta aaaagatcag gagtgatgag
     1741 attaactctt ttatcagtgc attgggctga aagcattacg cagactaaaa gctcatataa
     1801 atttgaaaat ttaagctctg ttacaggctt gtcaaaatgt tttaaaaaaa gttctttgat
     1861 ttctaaattt cttttcattt tttaatttta gttaattagc tttaaaccaa gtttagatat
     1921 aattgatttt atatacattt tattaaaaag gaaacctaat gaaaaaattt tctttagtcg
     1981 cagcaacttt gattgcaggt gtagttttaa atgtaaatgc agctacagta gctactgtta
     2041 atggcaagag cattagcgat
//
LOCUS       DARGED010000166         2036 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.167, whole genome shotgun sequence.
ACCESSION   DARGED010000166 DARGED010000000
VERSION     DARGED010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.167"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..262
                     /locus_tag="SFZ84_001668"
     CDS             <1..262
                     /locus_tag="SFZ84_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203751.1"
                     /translation="FCENKSIIDCQSIYDELYKLEATTDFTFEELQNYQAYIFLNSTL
                     LTGSNELPNNPFYFGELDQDNAIKQDTPSYYFSPSNEFKCKS"
     gene            404..1936
                     /locus_tag="SFZ84_001669"
     CDS             404..1936
                     /locus_tag="SFZ84_001669"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203752.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKYYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEISKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVSYRVDEMLVYVYDSFDFL
                     DQGHEFDDEGNFIKLGQPVGAWDFNTKTFSIEGSLYQMATYREWLEWEIDGYKIDCSI
                     SPQRILQSPKTKQYYLYNQDYQDYQKFTPYGLDFKLYSKDFITKLDFKDEAYNVLYNT
                     GV"
BASE COUNT          804 a          272 c          299 g          661 t
ORIGIN      
        1 gttttgtgaa aataaaagca taattgattg tcaaagtatt tatgatgaac tttataaatt
       61 agaagcaacg acagatttta cttttgaaga acttcaaaac tatcaagctt atatcttcct
      121 aaactccacc ctccttacag gctcaaatga acttcctaac aatccttttt actttggaga
      181 attagatcaa gataatgcca taaaacaaga tacacctagt tattattttt ctcctagtaa
      241 tgaattcaaa tgcaaatcat aaaggataaa ataatatatg aaaacaagcc aaatatatga
      301 aactttataa atatgctaga atgtgctgga ctaggtattc tataaattta aatgagaaca
      361 tgcttaagga atttctaaaa tataaaaaca ataggatgaa ataatggatg aagaactttt
      421 ttgggaaaac attgttccag taggacatat taatgaagaa actttaaaga gccaaattta
      481 tattaataat ataaatttta gcactttaca atatgatgaa acagtgttac ctacagaatt
      541 agagtgttgt tataatgaat ttaaatacta tcaaaaaagc aataatgaaa tagcaacact
      601 aggttgggct attagctatc aacttcaagt attgtggcaa aatagcccta agatagatac
      661 aatacaaaat tatcatctcc ccgtaaaaca aaataagcct aataatcccc aagcagaaca
      721 aagactaaaa gaaatacaaa atttcttaca aagtaaaggt atagaacctc ttattttaca
      781 ttatacccct tatccaaaca acacacaaac ccaagagatg aaaagactaa ggcaaaattc
      841 agagcgtttt tcgcgccatg tagataataa aacaaatgaa gtaagagaag aaaggcgttc
      901 tattaaattt tacactacgc tagattggga taagttttat tctcattttc ctataataaa
      961 aagactaagt aaaaaatttc atacaaaaga agacatatac actcaaaatt ttacaaagca
     1021 aatagaaata atcttacaaa aaactcataa tattttgata ttaaaaaatt tacctcaagg
     1081 agaatataaa tttgattttg cgatcgatat aaaagaaaat cgaagcgata aaaatgaaga
     1141 atcttatttc atcattaaag aaaatgatga aatttcaaaa gattataaac gcattttaga
     1201 ctgtaagccc tatgagcttg atactttaaa ttgtcaatat ataggtgtgg gtgatgatga
     1261 gtttttcaga caaatttggc aaaatttagg tataaatatt gcagagaaat ttaaggtaga
     1321 tttttcttat gctagacttg ataaatttat ttttgcgaca tcgccatttg gacttactta
     1381 taatacatat gagactttag agcaaactta tgatgaactc atgcaagatc tatctcttta
     1441 tgcttgtagt ggtaaatttt cttttaattt tgttccttca aaattaagca ttaaaaaaga
     1501 aattcaagga gatagagaaa aggtatcata ccgcgttgat gaaatgcttg tttatgttta
     1561 tgatagcttt gattttttag atcaaggaca tgaatttgat gatgagggaa attttatcaa
     1621 gctaggacaa cctgttggag cttgggattt taatacgaaa acttttagca tagaaggttc
     1681 tttatatcaa atggcaactt atagagaatg gcttgaatgg gaaatagatg gatataaaat
     1741 tgattgttca ataagccctc aaagaattct gcaatctcca aaaaccaaac aatactatct
     1801 ttacaatcaa gattatcaag actatcaaaa attcactcct tatggtttgg actttaaact
     1861 ttatagtaaa gattttatca ctaaacttga ttttaaagat gaagcttata atgtgcttta
     1921 taatacagga gtttaaatgg gagaagatat tatactttct attttttggg gtttatttgg
     1981 atttattctt gcttttacta atataaaatt ttatcttaca actttaagtg ttcttg
//
LOCUS       DARGED010000167         1958 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.168, whole genome shotgun sequence.
ACCESSION   DARGED010000167 DARGED010000000
VERSION     DARGED010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.168"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            204..989
                     /locus_tag="SFZ84_001670"
     CDS             204..989
                     /locus_tag="SFZ84_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8203753.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFTLGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVCVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            1062..>1958
                     /locus_tag="SFZ84_001671"
     CDS             1062..>1958
                     /locus_tag="SFZ84_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEG8203754.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKII"
BASE COUNT          673 a          280 c          319 g          686 t
ORIGIN      
        1 tttaatcaat aaatataaat tttgctttaa atttaaaata aatattataa aatctttata
       61 ttttataata ttttgaaaca tttttacgat gcttaaagtt accaaaaaaa tattctattg
      121 ttataaaaaa ctaagataat acttagctta ataagataaa attattccgt atttgaaata
      181 tttagtattt tttaggaaaa gctatggaaa tcacagattt accttatcta atcataggaa
      241 tcatttcagg tattgcttct ggactttttg gcattggcgg aggtatgatt atcgttcctt
      301 ctatgttcac acttggagca agtgctcacc atgctatcgg aatttcagta ttacaaatga
      361 tttttgcagc agtttttggc tcttatatta attataagaa aaaaaatcta aatcttaaag
      421 atggtattat gataggtttt ggagggctca taggggcaag ctttagcgga atgcttttaa
      481 aagctttaag tgatgtagct cttactagcg tatttttggc ggtaagttgt atatttttta
      541 tcaaatatgc ttttggaatt aaagaaaaca ttgtgcaaaa tcaaagaagc gtttgtgtaa
      601 agaatgtcat tttatttatt gctggagctt ttactggtat ttttgctatt tctttgggaa
      661 ttggtggcgg acttttaatt gctccgattt tagcttattt tttaggctat gatagtaaaa
      721 aagttgtttc cttatccttg ttttttgtta tttttgcttc agtctctggt attatatctt
      781 tttcaaattc tggagttata gactctgaag ttattcataa aggaatacta gtaggtatag
      841 cttctatggt tggagttttt ataggaatta aaatcataga aaaaatgcat atttcagctc
      901 atagaaaaat tttactttgc gtatatgcct tatcaatact tggaaccacc cactctttgc
      961 ttaataagct aaattttata aatttttaac ttggatttat ccaagttctt ttaatattat
     1021 tatgctaaaa tcttaaattt atttaatgtt taggaaagac tatgaacgat accataaaaa
     1081 tcattggcgc aagagaaaat aacctaaaaa atatccacct tgaaattccc aaaaacaaac
     1141 tcattgtttt tacaggactg agcggaagtg gaaaatcaac ccttgctttt ggaactcttt
     1201 atgctgaagg acaacgccgt tatatagaaa gtttaagtgc ttacgccaga caatttttag
     1261 ataaggtagg caaacctgat gtcgataaaa tcgaaggttt aactccagcc attgccatag
     1321 atcaaaaaac tacttctaaa aatccacgct ctactgtagg aaccatcact gaaatttatg
     1381 attatctaag acttttatac gcaagagttg gcattcaaca ttgtcatcaa tgcggacaaa
     1441 aaatttcatc tatgagtgta agtgatatag tcagtgaaat tttaaaattt ccaaaaggtg
     1501 caaaaatcat catctacgcc ccactcatac gagaaaaaaa aggaacttat gcagatttgc
     1561 ttgaaaattt acgcaacaaa ggctatgtaa gagctcaaat tgatggagtt ttggtaagac
     1621 ttgatgaaga aattgaacta gccaaaacca aaaaacacac cattaaactt gtcatagata
     1681 ggcttgaaat tcaagaagat ttactttctc gtcttgcaag cgatatagaa aaaggcttac
     1741 aagaaagctt tggagaaata gaaatagaag ttttaaatca tgaggaaata aaccttaata
     1801 aacactatca ttttagcgag cattcagctt gttttgattg taaaatttcc tttgttccac
     1861 tcgagccttt aagcttttct tttaattctc caaaaggagc atgtgaagct tgcgatggac
     1921 ttggaattcg ttatacttta gatatgaaaa aaatcatc
//
LOCUS       DARGED010000168         1952 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.169, whole genome shotgun sequence.
ACCESSION   DARGED010000168 DARGED010000000
VERSION     DARGED010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.169"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..1952
                     /locus_tag="SFZ84_001672"
                     /pseudo
     CDS             1..1952
                     /locus_tag="SFZ84_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          785 a          216 c          237 g          714 t
ORIGIN      
        1 aaaaaatatc aaagaatcta actattttga gcaagaaatt aaaccaaaga tacaacttac
       61 cctagataca ctttttaata cacttttaaa aaatattact caatctaatg atgatgaata
      121 taagcaaatt attagagcta tagcaaaatt ttttatcaat atattagatt ctgtaaccaa
      181 tcttaaaaaa cctgtctctt tagtcaaaaa aaatccttat gtttttgttg taaatacatt
      241 atttgaagct tataattctt ctgctgagta tcaagagtat aaggaacaaa aatattatta
      301 tgattttgct tatccacttt tagagcttat tactagtaag ctttatccta ttatcgcttt
      361 gtgcaatgaa gaaattttat ccgatgtatt gattatagat gataaagtat tattagattt
      421 ttcatcttat tctaatgtac cttctattag tctttataaa aatagttttt ataaagttat
      481 tttagatgaa gaatttcaag gtatttttga taatttttta gaaaataatc taaaatttga
      541 aaatgaaaag ttagataata cacttttagt gaattctagt ttaaataatt ttgatacaac
      601 attaaaaaaa gcaatcaatt taaatatctc taaactcaat catttctttt atgcagaata
      661 tcctgattta aattcttcca tgctagtaga aatgatatta gataaaaaaa atactgatca
      721 aatcaataca accaaaatgg gtaaaaatta tttgcttatt actaatccac cacagcttaa
      781 caatgcagga ctttgtgagg acttgtatca aaaaaaatta ggagcaataa taaaaaatcg
      841 cccaaaatcc cttacaaaaa atgaaaaact tgggttaaaa gagcaatttc ctagtaaaag
      901 agattatggc tcttatttta tagaaagaga tgttaaaaag gaagatgatt atgtattgca
      961 actttgtcct tttgtgaaac ttgatggaca gatttatcaa aaatataaag ggtattttaa
     1021 tttttataat caaacatatt cttgggtcaa actttattta ttagaatata taaacgaacg
     1081 attagaatat gaaaaagtta agcaagattt tgcttatatt gatagctttt ttaaattgcc
     1141 taaagaactt gaagaaatta gcgaaaaaga aaaagtaaaa gaatatgtcg agctttttaa
     1201 taattattta gataatatca attctcgcta tgaccaaaca caatccaatc ttaactcaaa
     1261 accattaatg tttaaaacat atgaaaatgt agattttaag aaatactcac ctttaacggt
     1321 tgttttattg actttgactt tgtatgtttt acaaaaagac ttagctttta cgcaagaata
     1381 ttctttggga tataaattgt ttcaggcaaa tattggtaat tatcaaaaga ttaaaatacc
     1441 aaattatttt aatgagtata tttcatttat ccctgatgat atttattttt atgataatga
     1501 taaaaaaatt tatatctttt tatctaaaga attaaataaa aataaaaaag aagatgaagt
     1561 tatttattta gatgaattag ctaaagctat gtttgaaaat gattttgaag aagaagatca
     1621 aacttatgta aattttttaa aaaccttaaa tgaaagcttt gatgaggaga ttgaatttga
     1681 agaaaatata caaacagaca aaactcttcc ttcaaaaaaa gatttagata aaagcattca
     1741 agatattatg cttgataaag aacttgcaaa attatctata gatattactt ttttttaata
     1801 tcattaagca actttttcct tttacagaat tttttatgag tcagcctgat ttttttaaaa
     1861 aaatgatttt attttttata gattcaagct tagataaaaa gtattatggt aataaattat
     1921 tttctagttt taaagcacat ttttttaaag aa
//
LOCUS       DARGED010000169         1938 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.170, whole genome shotgun sequence.
ACCESSION   DARGED010000169 DARGED010000000
VERSION     DARGED010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.170"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            210..1526
                     /locus_tag="SFZ84_001673"
     CDS             210..1526
                     /locus_tag="SFZ84_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8203755.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1502..>1938
                     /locus_tag="SFZ84_001674"
     CDS             1502..>1938
                     /locus_tag="SFZ84_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8203756.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIK"
BASE COUNT          646 a          206 c          351 g          735 t
ORIGIN      
        1 aatattaaaa gaacctttgc aagataaaat ttgcaagaag gaagtctcat ataaatgtga
       61 tgagctagtg tatactttca aagaagaaaa tcatcaaatt attttaaata taacaaattg
      121 agtatattaa atgtttatat ttaaaaaagt aatttttaag tagaattgtt ttttaaaaaa
      181 atatttaaaa aaagagataa gataacatca tggcaaaaaa acaactctcc ttaacaagac
      241 tcagttttcc tatattttgg gatttgcttt ctaagtattt aaccgtgatt atcaataccg
      301 ctatggtgtc gcattattct aattttcttg ttggtgctat gggcgctgga aatcaaattt
      361 tagatctttt tatcactatt ttttcatttt taagtgtggg ttgtagtgtg gtgatcgcac
      421 aagcaattgg tgcaaaagat catgttttag caagaaaagt gattcatcaa agtttgttct
      481 taaatgcact tttaggcttt gtatgcggtg tgcttatttt atggcatggg gagtatttgc
      541 tttatctttt aaaaattcca caagaattgc tcaaagatag cgaaatttac ttacatatgc
      601 ttgcaatttg tttgtttttt gatgccatag gtattgtttt agctgctatt gtaagggttt
      661 ataatatggc ttattgggtc atgtttatag gttttttgat ggatatagtg gtgatttgtg
      721 gaaattatta tgttttgcat tatacaaagt cagaactttt tggaataggg cttagtaata
      781 tttttgctcg cattgttgct atagttgctt tgtttgcgat acttttttat aaacttaaaa
      841 ttcatcttaa aatcaaagaa atgataaaac ttgaaaaaga agttttaaaa aaggttttaa
      901 atataggagg attttcagca ggggaaaatc ttttgtggat agtccaatat actatagctt
      961 ttgcttttgt agcaagctta ggtgaggcga gtttgagtgt gcaaacgatt tattttcaaa
     1021 tttcaatgct tatcatgctt ataggacaag ctataagcat agctaatgaa atcatagtag
     1081 gtaaattagt cggtgctaga tatgaaaata tcgcttataa acatgcttgg cgtgctttat
     1141 attttagtgt aatagcgagt gctttagtgg cgtttttaaa ctatctttgt caagatttta
     1201 ctatgcaaat tttagggctt aaagaagagc taaaaaattt aatgatacct ttatttgctc
     1261 tttcaatctt tcttgaaatt tcacgaactt ttaatatagt tatggttaat tccttgcgcg
     1321 caagtggcga tgctaagttt ccatttttta gcggacttgt ttttatgatg ggggtatctt
     1381 tgcctgtggg ttatgtgctt tgttttcatt ttaatcttgg aattttaggg gtttggatag
     1441 ggttttgtgc agatgagttt ttgcgtggaa tggtaaattc atacagatgg aaaagtaaaa
     1501 aatggcaagg caaagctcta gtttaaaatc atttatttat aaagatgagt gctattttta
     1561 ttctaaaaaa tgcataaaaa ctttaagatt aaggctaaat gaaaagggtg aatttgttct
     1621 tagtattcct tatttttgca cctttaaaag tgtttatgag tttttagata aatcaagttc
     1681 ttggatgaat gaggcaaaaa caagatttga aaaaaaagtt ttaaaagatg atgagttaat
     1741 ctttttagct aaaaaatatc aaatcatttt tgatgaaaat gccaaaaaaa tttattttga
     1801 taaagataaa ataatttgtc aaaataaagc aaaattggat ttatttttaa gacaaaatgc
     1861 taaaaagatt tttacttttt atcttaaaaa atggagtaaa aaaacaggct tattttacac
     1921 gcatttaagc attaaaaa
//
LOCUS       DARGED010000170         1913 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.171, whole genome shotgun sequence.
ACCESSION   DARGED010000170 DARGED010000000
VERSION     DARGED010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.171"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..926
                     /locus_tag="SFZ84_001675"
     CDS             <1..926
                     /locus_tag="SFZ84_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8203757.1"
                     /translation="LLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAIL
                     LTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASI
                     FALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFAYALNYIQNIQGWLQG
                     SMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIV
                     SIITSLVIVSVGIIPFLGLIIPNLAALYLGDNLRKNLIYIALCGALFLLVCDIISRLV
                     IFPFEMPLSITTGVLGSLIFIFLLLKRKAYA"
     gene            919..1857
                     /locus_tag="SFZ84_001676"
     CDS             919..1857
                     /locus_tag="SFZ84_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG8203758.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVDLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
BASE COUNT          564 a          268 c          297 g          784 t
ORIGIN      
        1 tacttttatt ctttggaatg ataagtttat ttataggagt tatcagtatc aatgtaaaag
       61 atattcttaa tcttaactcc actcaactag aaatcataac tctcacaaga attcctagac
      121 ttatagcaat tttactcaca ggaatgagtc ttagtatatg tgggcttatc atgcaacaac
      181 tcacgcaaaa taaattcgtt tccccaacta cagcagggac catggattgt gctaaatttg
      241 gcatacttat ttctttaata ttttttactg gagcgtcttt tttcactcaa gctatcattg
      301 cttctatatt tgcacttttg ggttctttta tatttatcca aattttaaga aaaatcaaac
      361 tcaaagatgt gatttttgta cctttgatag gcttgatgtt tggaggtatt attagtgcta
      421 taaccacttt ttttgcctat gctttaaatt atatacaaaa tatccaaggt tggctacaag
      481 gcagtatggc aaatgttatg cagggaaatt atgaattgct ctacatttct ttaccacttt
      541 ttatacttgc ttatttttta gctcataaaa tcaccatagt tggcatgggc gaagatatag
      601 ctttaaatct tggaatttct tataatggga tattattttt aggcttgatg attgtaagca
      661 ttatcactag cttagtgatt gtaagcgttg gaattatccc ttttttaggg ctaattatcc
      721 caaatttagc agctctttat ctaggtgata atcttagaaa aaatcttatc tatatagcac
      781 tttgtggagc tttgttttta cttgtttgcg atatcatttc aagacttgtc atctttcctt
      841 ttgaaatgcc tttaagtatc actacaggtg ttttaggatc tttaatcttt atctttcttt
      901 tgctaaaaag gaaagcttat gcgtaaaaaa atgctgattt taagcttttt aacacttggt
      961 atgataggga tttttatact tgtggattta aatggctttg atgagtatgc cttaaaaagt
     1021 cgttttttac aaattgcagc tattatcata gtagctattt gtatcgctgt ttcaacagta
     1081 atctttcaaa ctttatgcaa taacaaaatt ctaacccctg ccatcatagg attagattct
     1141 ttatatatgt tacttcaaag tgctcttatc ttttcttttg gtgcagctaa tttaagtgtt
     1201 tataaaaacg atatcaattt tttaatcact ctagtttgta tggtggtttt ttcactagga
     1261 ctttataaaa ttttatttag tagcgataga agtatttatc ttatcatgct tttaggctta
     1321 gtttttggga cactttttag cactttaagc tctttttttg aagtgctaat cgaccctgat
     1381 gaattcatgg taatacaagg aagaatgttt gctagttttg ataatattgc ttttgatgtt
     1441 ttaattcttg cttatattat tagcttttta agttttatat ggatttttcg ctatatgaaa
     1501 tttttagatc ctttaaattt aggcaaagat ttagcgataa atttagggat aaattatcaa
     1561 aaaatttcaa aacaattaat gattatcata gctattttaa cttctattag caccgcactt
     1621 gtaggtccta taaccttttt agggcttttg gtggtaaata tcacttatga actatttaaa
     1681 actgcaaagc atagtatttt gctaagcgct tgtatactta ttagtatttt ggctttactt
     1741 ggaggggtgt tttttgtctc tagagttttt gattataatg ccactataag cgtggttatt
     1801 aatttcttag gtgggatata ttttatctat cttgtattaa agggtaataa attatgatta
     1861 aactaaaaaa tatcaccaaa ttttatgata ataaagtcat tatttcagat ctt
//
LOCUS       DARGED010000171         1912 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.172, whole genome shotgun sequence.
ACCESSION   DARGED010000171 DARGED010000000
VERSION     DARGED010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.172"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..433)
                     /locus_tag="SFZ84_001677"
     CDS             complement(<1..433)
                     /locus_tag="SFZ84_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203759.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLQLDDYIKLKF"
     gene            complement(426..1838)
                     /gene="mshL"
                     /locus_tag="SFZ84_001678"
     CDS             complement(426..1838)
                     /gene="mshL"
                     /locus_tag="SFZ84_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG8203760.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            complement(1816..>1912)
                     /locus_tag="SFZ84_001679"
     CDS             complement(1816..>1912)
                     /locus_tag="SFZ84_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8203761.1"
                     /translation="IYEINTKEIKFQYDNLEIAIQINKNDKININ"
BASE COUNT          662 a          298 c          211 g          741 t
ORIGIN      
        1 cgaatttcaa tttaatataa tcatcaagtt gtaaaagact aatatttttc aatttaaaac
       61 aagcacttaa acgactttta aaatgctctt ttttaagtat atttaacttt ttatgagaac
      121 ttaaaacaaa acttatagaa tcactataaa tcctgatgct ttctagcatt gcgtaatcat
      181 acattcccac ttcatcaaga atgattaaac tctgaccttg tgaaatcaaa aactcaattt
      241 tttcttttaa gaaactctga tctttaaaat tttcattaat aaaatcaaca ttatattttt
      301 ttgccaatct ttgcaacaat acacttttac cactaccact ttttccccat aaaaaaataa
      361 aagctttttg gctttctaaa atttgattga tttgatgaaa aatttcttct ctaaatggaa
      421 taattttact cataatgctt aaatcctaga tctttaagac ttggagcatt tacactatct
      481 actatacttg gagtgataat aaaaacaatt tcagttgctt tagaatttaa aacttctcct
      541 ttaaacaaag aacctaggat tggaattttt gatagaaaat tgatagaatt tttctcatta
      601 gatttatcgt gagaaatcaa tccacctaaa attaaagttt gattattctc tacttgcaca
      661 acactagaaa gctttttttg tatggtatca ggagcaatag ttcttggttc tttttgtcgt
      721 ttattatctt ctggatactt aaaatcactt aagcttggat taatcctgag cattattttt
      781 ccatcatcag aaatttcagg caagatattg agtaaaatgc ctacaaaaat agaataattg
      841 ttataacttt cactaacagt agtcccattt tcagtgcctt tagaactttc tttaacttga
      901 taatttatag tatcacctac agaaataatg gcttgttggt tatttaaagc cataagcttt
      961 ggattagaaa gcacgctagt ttttccattt tgagaaagaa agttaataat agaatcaaaa
     1021 tttaaattcg cccttaaacc caaattctta acaaaacctt gcccattttg aaactgaata
     1081 aaagaatttt cattatttac ttgcgaattt aaacctatat taaaattttg ccaattaatc
     1141 ccactagaat ggttttcatt taaactcaca gcaagtatgc taacatcgat aataacttgt
     1201 tttttaagac gattttctag tttttgcaaa taatttttca cactttttaa ctgagaattt
     1261 gttccagtta ctataataag acctgcattg ggatttataa tgggagtttt agcctcataa
     1321 tcttcatgag aattttttaa taatacaata atctcttttt ctatattttg ccaaaaatca
     1381 aatttttcca tacttttaat catattgtct tctgcgtcat caaaactacc gctatattca
     1441 ctttgccttg gtttagcgtc tacagacgct ttagttatgc tttgtccttc tctgatagaa
     1501 gtgatataac ttatcttaaa aatcttcgta ttaatgcctg aaattcttaa aattttacca
     1561 tcaaaatcat agctaagatc atgctctttg ataaaaaaat taaaaatttc gtctaaactc
     1621 atttgatgaa tattgacaga gttttgcaat atttctaatt tttctttggc aattttatct
     1681 ttaacaataa tactaaaaga acaatatttt gcaagctcat caagactttc ttgtatgctt
     1741 aatttttcat taatactgat atcaaaaaga cgcttttgac aatctaaagc ataaagataa
     1801 tggcaaaaaa gaatgttaat taatattaat cttatcattt ttatttattt ggattgcaat
     1861 ttctaaatta tcatattgga atttaatctc tttagtattt atttcatata tt
//
LOCUS       DARGED010000172         1909 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.173, whole genome shotgun sequence.
ACCESSION   DARGED010000172 DARGED010000000
VERSION     DARGED010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.173"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(12..749)
                     /locus_tag="SFZ84_001680"
     CDS             complement(12..749)
                     /locus_tag="SFZ84_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8203762.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDKGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(751..1407)
                     /locus_tag="SFZ84_001681"
     CDS             complement(751..1407)
                     /locus_tag="SFZ84_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8203763.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(1400..>1909)
                     /locus_tag="SFZ84_001682"
     CDS             complement(1400..>1909)
                     /locus_tag="SFZ84_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEG8203764.1"
                     /translation="LLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRPSFACVI
                     VGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAISMPSIS
                     ANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFILL
                     KFEKRLLHA"
BASE COUNT          716 a          381 c          220 g          592 t
ORIGIN      
        1 attattttta tctatttatg ataatcaaat aaatttaaaa atttctttgc tctttcgctt
       61 tttggatttt taaaaaaact tttaggatca ttttcttcga tgatttttcc tttatccata
      121 aaaataattt tatctgctac agctttagca aaacccattt catgagtaac aataagcata
      181 gtcataccct cttttgcaag atttaacatc acttctaaaa cttctctgac aatctcagga
      241 tccagcgctg ctgtaacctc atcaaaaagc attaactcag gattcatgca taaacttctt
      301 actatggcaa ttctttgctt ttgtcctccg ctaagttctc ttggataagc atgaatttta
      361 tgcaaaagcc ccaccttttc aagccaaatt ttagcctctt ttaaaacctc atctttcttt
      421 cttttttgca ctttcatagg ccctagaagt atattttctt caacacttaa atgctcaaaa
      481 agctcataag attgaaaaac cataccaact ttttgacgca ttcttggcca ttctttaaaa
      541 tctttatcta ttttctcatt atcaatataa atattaccac ttgcaatctc ttcaagccca
      601 ttaatacaac gcaaaagcgt agattttcca catccgctag gacctaaaat caccacaact
      661 tctttagcct taacttccaa attaatatct tttaaggcgt gatgcgaacc ataatacttt
      721 tgtaaatttt ctatttttag tatactcatt ttagctccat tttttctcta attttcttga
      781 atataaagtg ataggataac aaagtataaa aaagataaaa aaaatcaaac cataaataat
      841 aaaaggtgca aaatcatttc tattatgaaa ttctataatt tgttgcccta cttttacaag
      901 ctctaccgcg ccgattaaat aagcaaaggt tgtactttta atcatacgag taagtaaatt
      961 catgctcata ggagttaaac gacgcatagc ttgtggaata ataacataag caaaactttg
     1021 caccgtattt aaacctaaag atgatgcact ttcatactga tgttttggaa tactctgcaa
     1081 ggaaacacgc accaaatcca tcatctcaaa acaaccccaa atgctaaaaa caataatagc
     1141 tgcacttaca gaactcaaat cccacccaaa ccatctagga aaaccaaaat acaccacaaa
     1201 aagccatact aaaagtggca taacacgcac aaattctaaa cccaaacgac aaaaagcata
     1261 gatataggta tttttaaaac tcattaaaat tcctaaaaat aacccaccta tcgaagtaat
     1321 aataatgctg ataaatgaaa tttcaagagt gacaaaaagc ccttgccaga gtcttaaaag
     1381 cgtatcggta tttaaaagtt caagcatgaa gcaacctttt ttcaaacttt agcaaaataa
     1441 aagacaaagg taaaataatg cataaatatc ccataaacaa caaaaacaat agctcatctg
     1501 tcttataggt taaggaattt aaactcttca ttaaattcac caaatctggc aaggcaataa
     1561 tactaacgac tgaagtttct ttgattaaaa atataatatt agcactaata cttggcatag
     1621 aaatagccaa agcttgcggc aaaatcacat aacgcaaatt tccaaatttt gaaaaaccca
     1681 aagaaagtcc cgcttcaaac tgctgttttc ttatggcttc aaatcccgct cttaaacttt
     1741 cagccatata agaacctcct aaaaaactaa gtcctactat aacacaagca aaagaaggcc
     1801 ttaaagtttc ttctacgctt aagcaaatca aatcaagcgg tggaatttgc tctaaatgta
     1861 tattaaattt aggtaaagca taatataaga aaaaaagttg aattaataa
//
LOCUS       DARGED010000173         1836 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.174, whole genome shotgun sequence.
ACCESSION   DARGED010000173 DARGED010000000
VERSION     DARGED010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.174"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..216
                     /locus_tag="SFZ84_001683"
     CDS             <1..216
                     /locus_tag="SFZ84_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203765.1"
                     /translation="KAFFKFICERCLRIFLLKRDPCCIKIQIKKILKQYKNYRYVHLT
                     NFYGAFIYFKIFKINIIKKYIRYLFFR"
     gene            254..1360
                     /gene="glf"
                     /locus_tag="SFZ84_001684"
     CDS             254..1360
                     /gene="glf"
                     /locus_tag="SFZ84_001684"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEG8203766.1"
                     /translation="MYDYLIVGSGLFGSIFAYEATEKGYTCLVVEQREHIGGNCYTEN
                     IKNINVHKYGAHIFRTSDQNIWDYMNQFCEFNHFINSPIAIYKDEIYNLPFNMNTFSK
                     LWGIKTPNEARKIIEMQKQIIQHPPKNLEEQAISLVGTDVYEKLIKGYTEKQWGRSCK
                     DLPASIIRRLPVRYIYDNNYFNDPYQGIPKGGYTAIFDKMLKKSKVILNTDFLKYKDK
                     FKNKAKKIVFTGCIDAYYDYRYGALEYRSLKFEHKILNLDNFQGVAVVNYTDKEIPYT
                     RIIEHKHFEFGNTDTTVISEEYPLEWIKGIEPYYPINDEKNQALYEKYKQLAKHESNV
                     YFGGRLGEYRYYDMQDVVRSALLFCKNELKNKQG"
     gene            1362..>1836
                     /locus_tag="SFZ84_001685"
     CDS             1362..>1836
                     /locus_tag="SFZ84_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203767.1"
                     /translation="MMNYNTPKVSIVVPSLNSISYIRECIDSILNQTLKDIEILCIDA
                     NSTDGTLEVLKNYEKKDKRLRVIISDKKSYGYQMNLGIKEAKGEYLGIVESDDYIKTN
                     MYERLYEIAKKNDCEVVKGDFYIFAYGKTEYVNVLRNSCEDIYNYKVNWNKDIRIF"
BASE COUNT          731 a          150 c          304 g          651 t
ORIGIN      
        1 aaagcatttt ttaaatttat ttgtgaaaga tgtttaagga tatttttact aaaaagagat
       61 ccttgttgta tcaaaattca aataaaaaaa atattaaaac agtataaaaa ttatcgctat
      121 gtccatttaa caaattttta tggagctttt atttatttta aaatttttaa aataaatatt
      181 attaaaaaat atataagata tttatttttc aggtaatttt ttttataatt aggttttgtg
      241 aggaatgtga ttcatgtatg attatttaat tgttggttct ggattgtttg gtagtatttt
      301 tgcttacgaa gcaactgaaa aaggttatac ttgtttagtt gtggagcaaa gggaacatat
      361 tggaggtaat tgttataccg aaaatattaa aaatatcaat gtgcataaat atggtgctca
      421 tatttttaga acttcagatc agaatatatg ggattatatg aatcaatttt gtgaatttaa
      481 tcattttatc aattctccta ttgcaatcta taaagatgaa atttataatt tgccttttaa
      541 tatgaatact tttagtaaat tatggggaat taaaactcca aatgaagcta gaaaaataat
      601 tgaaatgcaa aaacaaataa ttcaacatcc tccaaaaaat ttggaagaac aagctatatc
      661 tttagttggt acagatgtat atgaaaaact tattaagggt tatacagaaa aacagtgggg
      721 tagatcttgt aaggatttgc ctgcttctat tataagaaga ttgcctgttc gatatattta
      781 tgacaataat tattttaatg atccctatca aggtatccct aaaggcggct atacggcaat
      841 ttttgataaa atgctaaaaa aaagtaaagt tattttaaat actgattttt taaaatataa
      901 agataaattt aaaaataaag ctaaaaaaat agtttttact ggttgtattg atgcttatta
      961 tgattatcga tatggagctt tggaatatag aagtttaaaa tttgagcata aaatattaaa
     1021 tttagacaat tttcaaggag tggcagttgt caattatact gacaaggaaa taccttatac
     1081 tagaattata gagcataagc attttgaatt tggaaataca gatacaacag ttataagcga
     1141 agaatatcct ttagaatgga ttaagggtat tgagccttat tatccaataa atgatgaaaa
     1201 aaatcaagct ttgtatgaaa agtataagca attagcaaaa cacgagagta atgtatattt
     1261 tgggggaaga ttgggagaat atagatatta tgatatgcaa gatgttgtaa gatcggcatt
     1321 attattttgt aaaaatgagt taaaaaataa gcaaggatga aatgatgaat tataatactc
     1381 caaaagtttc tattgttgta ccttcattaa attctatatc atatataaga gaatgtattg
     1441 atagtatatt aaatcaaact ttaaaagata ttgagatact ttgtattgat gcaaattcaa
     1501 ctgatggaac tttagaagtt ttaaaaaact atgaaaaaaa agataagagg cttagggtaa
     1561 taatatcaga taagaaaagt tatggttatc aaatgaatct tggtataaaa gaggcaaagg
     1621 gagaatatct tggtatagtt gaaagtgatg attatattaa aacaaatatg tatgaaagac
     1681 tttatgaaat tgctaaaaag aatgattgtg aagttgttaa aggggatttt tatatatttg
     1741 catatggtaa aactgaatat gttaatgttt tgagaaattc ttgtgaagat atttataatt
     1801 ataaagtaaa ttggaataaa gatataagaa tatttt
//
LOCUS       DARGED010000174         1781 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.175, whole genome shotgun sequence.
ACCESSION   DARGED010000174 DARGED010000000
VERSION     DARGED010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.175"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1627
                     /locus_tag="SFZ84_001686"
     CDS             <1..1627
                     /locus_tag="SFZ84_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG8203768.1"
                     /translation="LISDMYFSSSIIRTFLNKFSPIFNNIPIYMSSEFRLKKNSGNLF
                     KAILNLEKVDPKKWIHCGDNWVGDYLKPSNLEISTNFYINQLLPYEEFALNRNSLDMD
                     LQKIIGISKKIRLENTLTNLQEIGVSFGAPMLLPYVQWILNIALKNSIRCLYFIARDG
                     YVLQKMTDMLIQAKKINIKTKYLYGSRESWREPFRNKDKLKIQLIDEYLDQEIDKQEI
                     FAFVECCGTGETLDYIVKRIESNQQFKNMFFGSLYLYRSKLNKTKTQSLFMLPLNENY
                     TYGIELFVRSLQGQVLGYDKKDGRVIPVFDFLEGEALQKFRYDEYIDGVMLFMEYIVK
                     TDNYEKIFDNMNVTILYLNYLSNNYIDKKFIEIMGNVPFILNGVKDRVGIFAPRLNNK
                     ITLDQKNSFFNWSVLRSCKDIRVKYNMDNDCYFGLIGAVDIIKSHLSYKLGKVILLNI
                     KNPLKWIKLIVLIPILIFSHHEQKKIYLTEKKINIDLSFYKDYNEAIMVRNFFSYQLG
                     ELILKTSRKWNVLAIVILPYKIAQLYRKKFKKG"
     gene            1630..>1781
                     /locus_tag="SFZ84_001687"
     CDS             1630..>1781
                     /locus_tag="SFZ84_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203769.1"
                     /translation="MDNSKPLIIAGRDDGFGERMRALLNALYISKKFGFKFGFVWRDI
                     NNIQNL"
BASE COUNT          664 a          169 c          289 g          659 t
ORIGIN      
        1 tttaatttct gatatgtatt ttagttcttc tattattaga acctttttaa ataaattttc
       61 ccctattttt aataatattc caatatatat gtcatcagag tttagattaa aaaaaaatag
      121 cgggaatttg tttaaggcta tattaaattt agaaaaagtt gatccaaaaa aatggattca
      181 ttgcggcgat aattgggtgg gggattatct taagccctca aatttggaaa tttctacaaa
      241 tttttatatt aatcagttgc ttccatatga agaatttgca ttaaaccgta attcattaga
      301 tatggatttg caaaaaataa ttggaatatc taaaaagata agacttgaga ataccttgac
      361 taacttgcaa gagataggag tttcatttgg tgcccctatg ctattacctt atgttcagtg
      421 gattttaaat attgctttaa aaaactctat tagatgttta tattttatag caagagatgg
      481 ttatgtattg caaaaaatga ccgatatgtt aattcaagca aaaaaaatta atattaaaac
      541 aaaatacttg tatggttctc gagagtcttg gagagagcct tttagaaata aagataagtt
      601 aaaaatacag ctaattgatg agtatttgga tcaagaaatt gataaacaag aaatttttgc
      661 ttttgttgag tgctgtggca cgggtgaaac tttggattat attgtaaaaa gaattgaaag
      721 taatcaacaa tttaaaaata tgttttttgg cagtttatat ttatatcgta gtaaattaaa
      781 taaaactaaa actcaatctt tatttatgct ccctttaaat gaaaattata cttatggtat
      841 agaattattt gttcgttcgt tacaaggtca ggttttagga tatgataaaa aagatggtag
      901 agtgattcct gtttttgatt ttttagaagg ggaggctttg caaaagttta gatatgatga
      961 atatatcgat ggggtaatgc tttttatgga gtatatagta aaaactgata attatgaaaa
     1021 aatctttgac aatatgaatg taactatttt atatctgaat tatttaagca ataattatat
     1081 agataaaaaa tttatcgaaa ttatgggaaa tgttccattt attcttaatg gagtaaaaga
     1141 tagagtgggt attttcgctc ctaggttaaa caacaaaata acattagatc aaaaaaattc
     1201 tttttttaac tggtctgttt taagaagttg taaagatatt agagttaaat ataatatgga
     1261 taatgattgt tattttggcc ttatcggtgc tgtagatatt ataaaatctc atctttctta
     1321 taaattgggc aaagttatac ttttaaatat taaaaatcct ttaaaatgga taaagctgat
     1381 agttttaatt cctattttaa ttttttctca tcatgagcaa aaaaaaattt atttaactga
     1441 aaaaaaaata aacatagatt tgagttttta taaagattac aatgaggcaa ttatggttag
     1501 aaattttttt tcctatcagc ttggagagct tattttaaaa acatctagaa aatggaatgt
     1561 tttagctata gtgattttac cttataagat tgcacagcta tatagaaaga aatttaagaa
     1621 aggataataa tggataattc aaaacctctc ataattgcag gaagggatga tggatttgga
     1681 gagagaatga gagcattatt aaatgctctt tatatatcta aaaaatttgg ttttaaattc
     1741 ggttttgtat ggagagatat taataatatt caaaatttat t
//
LOCUS       DARGED010000175         1777 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.177, whole genome shotgun sequence.
ACCESSION   DARGED010000175 DARGED010000000
VERSION     DARGED010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.177"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..511
                     /locus_tag="SFZ84_001688"
     CDS             <1..511
                     /locus_tag="SFZ84_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203770.1"
                     /translation="LMPLISNDLALNTQQATLITSMIVVAKIFGPYLGLFFKRKNISF
                     KIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELKNSNPN
                     QTAYIMSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQFVLPR
                     RENFIQGEK"
     gene            513..1664
                     /locus_tag="SFZ84_001689"
     CDS             513..1664
                     /locus_tag="SFZ84_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8203771.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(1668..>1777)
                     /locus_tag="SFZ84_001690"
     CDS             complement(1668..>1777)
                     /locus_tag="SFZ84_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG8203772.1"
                     /translation="IKNNKELLANLPSNLKLKEIQIKGLKEEIVLEILD"
BASE COUNT          579 a          217 c          338 g          643 t
ORIGIN      
        1 tttaatgcct ttgatttcaa atgatcttgc cctaaatact cagcaagcta ctttaatcac
       61 tagcatgata gtagttgcga aaatttttgg tccttatctt ggattatttt ttaaaagaaa
      121 aaatatttct tttaaaataa tgctattgtc tggaggagcg tgtattttta tatgcggatt
      181 ttgtatgtta tttttacaaa atttagtatt gatacagatt tttgctgtgt tatcaggcat
      241 tttttattct atgtggtttc catttttctt taatctacct tcagaattaa aaaattccaa
      301 cccaaatcaa actgcttata ttatgagtgc tttttggagt attacctttg ttatactatc
      361 atttaaccta tgggtagtat cttggagtgt tgataaaacc catagtttta ctttgggttt
      421 tgtttatatt tttgctttga tttttatttc agcgatctta gcacaatttg ttttacctag
      481 aagagaaaat tttatacaag gagaaaaata gaatgaattt aattccagaa atactagact
      541 tacaaggcga atttgaaaaa attcgtcatc aaattcatga aaatcctgag cttggttttg
      601 atgaattatg tactgcaaaa ttagtggcgc aaaaattaaa agaatttggt tatgaggttt
      661 atgaggaaat aggaaaaaca ggcgttgtgg gggttttaaa aaaggggaat agcgataaaa
      721 aaataggact tcgtgcagat atggatgctt tgcctttgca agaatgcaca aatttgcctt
      781 ataaaagcaa aaaagaaaat gtaatgcatg cttgcggtca tgatggacat actacttctt
      841 tattgcttgc tgcaaagtat ttagcaagtc agaattttaa tggcacttta aatctttatt
      901 ttcaacctgc tgaagagggt ttgggtggtg ctaaggcaat gatagaagat ggattgtttg
      961 aaaaatttga tagtgattat gtttttggat ggcacaatat gccttttggt agcgataaga
     1021 aattttatct taaaaaaggt gcgatgatgg cttcttcgga tagttatagc attgaagtta
     1081 ttggaagagg tggtcatgga agtgctccag aaaaggcaaa agatcctatt tatgctgctt
     1141 ctttacttgt tgtggcttta caaagcatag tatctcgcaa tgttgatccc caaaattcag
     1201 cagttgtaag cataggagct tttaatgcag gacatgcttt taatatcatt ccagatattg
     1261 caacgattaa aatgagtgtt agagcattag ataatgaaac tagaaagcta actgaagaaa
     1321 aaatttataa aatttgtaaa ggtcttgcac aggctaatga tatagagatt aaaatcaata
     1381 aaaatgttgt tgcaccagtg actatgaata acgatgaagc tgtggatttt gctagtgagg
     1441 ttgcaaaaga attatttggc gaaaaaaatt gtgaatttaa tcatcgtcct ttaatggcaa
     1501 gtgaggattt tggatttttt tgcgaaatga aaaaatgtgc ctatgctttt ttagaaaatg
     1561 aaaacgacat ttatttacat aattctagtt atgtttttaa tgataagctt ttagctaggg
     1621 ctgcaagtta ttatgcgaag ctagctttaa aatacttaaa ataaaaacta atctagaatt
     1681 tcaagcacaa tttcttcctt taaacctttg atttgaattt ctttgagttt taggtttgaa
     1741 ggaaggtttg ctaaaagctc tttattgttt tttattt
//
LOCUS       DARGED010000176         1725 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.178, whole genome shotgun sequence.
ACCESSION   DARGED010000176 DARGED010000000
VERSION     DARGED010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.178"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1385
                     /locus_tag="SFZ84_001691"
     CDS             <1..1385
                     /locus_tag="SFZ84_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG8203773.1"
                     /translation="VPVEVKKDNTLWVFFVLLIFIIALFISLGYFARKKELAKYPISN
                     KNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEF
                     GVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFS
                     KAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNK
                     IELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKDKNNNINLNKIAKASVGFSGA
                     GLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKKKILSFNDEEKKIQATYQAAK
                     ALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRIKVYLAGSRAMRLIYNESYTN
                     SQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLNSMKDKILKLSELLLEKEKIE
                     YDDVKDIMQV"
     gene            complement(1394..>1725)
                     /locus_tag="SFZ84_001692"
     CDS             complement(1394..>1725)
                     /locus_tag="SFZ84_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8203774.1"
                     /translation="VSKEFLQHNFKAPIGIVQKDKNSYEVYLSDGTELEFDIDGAWKE
                     IENKAFPFDLDFLPQNLANIIKSEFPNTKAREIERKINHYKIKLDNDIKILIDFNGTI
                     LYKEFDD"
BASE COUNT          616 a          193 c          320 g          596 t
ORIGIN      
        1 aagttcccgt agaggttaaa aaagataata cgctttgggt gttttttgtt ttacttattt
       61 ttattatcgc actttttata agtcttggtt attttgctcg taaaaaagag ttggctaaat
      121 atccaatatc aaataagaat caaaatcaca ctcaagctca aaattcaaat ataaatttag
      181 aaagttctca tataaaacct gtgatttcaa atattacttt taatgatgta gcaggtgttg
      241 atgaagttaa aatggagcta agcgaacttg tggatttttt acaaaatcct aaaaaatata
      301 aagaatttgg tgtaaaaatg ccaaaaggtg ttttaatggt aggcccacct ggtgtaggaa
      361 aaacattgat agcaaaagca gttgcaggag aagcaggggt gccatttttt tatcaaagtg
      421 gttcaagttt tgttgaaatt tatgtaggta tgggtgcaaa aagagttaga gagctttttt
      481 caaaagctaa aatgatggcg cctagcatag tttttattga tgaaatagat gccgtaggta
      541 aggcaagagg agaaatgtca aatgttgaaa gagatagcac tttaaatcaa cttttaactc
      601 aaatggatgg ttttgaggac aatagcgggg ttatagttat agctgcgaca aataaaatcg
      661 aacttatgga tcctgcttta ttgcgttcgg ggcgttttga taggagaatt tttttatctt
      721 tgcctgattt taaggataga cttaaaattt tagaaattta tatgaaagat aaaaacaata
      781 atatcaattt aaataaaatc gctaaagcaa gcgtaggttt tagtggagca gggcttgaaa
      841 ctttggtcaa tgaagcagca attaatgctt taagaagaaa tagtgcttta gttgaggaaa
      901 gcgattttta tgctgtatta aataaagttc ttttaggtaa gaaaaagatt ttaagtttta
      961 atgatgaaga gaagaaaatt caagccactt atcaagctgc aaaagctttg agtgcgtatt
     1021 attttgacat aggatttgaa aaaatcactc tcattgaaga tcgttttaaa gaatatgagc
     1081 ataatataag atcaaaatca gagcttatca atcgtataaa agtttatttg gctggttcta
     1141 gagccatgag attgatttac aatgaaagtt atactaactc gcaagatgat tttttaaaga
     1201 ttaaagaatt gcttgattat atgttgagtt ttgatatgtt gaaagagtca aatttaagtg
     1261 aacaaaaaaa agaaatggat gaatttttaa attctatgaa ggataaaatt ttaaaattat
     1321 cagagctttt gcttgaaaaa gaaaagatag aatatgacga tgttaaagat ataatgcagg
     1381 tttgatgata tgtttaatca tcaaattctt tatataagat agttccatta aaatctataa
     1441 gaatttttat atcgttatca agtttaatct tataatggtt gatttttctt tcaatttctc
     1501 tagcttttgt atttggaaat tcgcttttga tgatattggc taaattttga ggtaaaaaat
     1561 ctagatcaaa aggaaaggct ttattttcaa tttccttcca agctccatct atatcaaatt
     1621 caagctctgt tccatcgcta agatagactt cataggaatt tttgtctttt tgcacgatcc
     1681 ctataggcgc tttgaaatta tgttgtaaaa attctttaga aacat
//
LOCUS       DARGED010000177         1718 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.179, whole genome shotgun sequence.
ACCESSION   DARGED010000177 DARGED010000000
VERSION     DARGED010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.179"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..137
                     /locus_tag="SFZ84_001693"
     CDS             <1..137
                     /locus_tag="SFZ84_001693"
                     /inference="COORDINATES: protein motif:HMM:NF025387.1"
                     /note="This protein contains a domain related to
                     Tuberculosis Necrotizing Toxin, which is the C-terminal
                     effector domain of outer membrane channel protein CpnT,
                     and which has a lethal NAD+-glycohydrolase activity;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycohydrolase toxin TNT-related protein"
                     /protein_id="HEG8203775.1"
                     /translation="KNKFHSPKIGKISPYFEQEGGGTQIKLPISIENLIQLGFIKQIP
                     "
     gene            151..705
                     /locus_tag="SFZ84_001694"
     CDS             151..705
                     /locus_tag="SFZ84_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203776.1"
                     /translation="MTREQAELIIKEEKLIDTDWYPSYKHSGEYHLTMWFDSDNNKYE
                     AVYIGERGGVELEYSFDSEKEAIDKMLQMNYKQKYFSVNEDYSMQNRKEVALRIIQEE
                     NLEVIWYDEALKPMRAGIKHDKQRDKYISFITNAKAEIIEWKSIEFDGDEEFEGKIYN
                     DESKALYALINRARMIKQNRISFM"
     gene            764..>1718
                     /locus_tag="SFZ84_001695"
     CDS             764..>1718
                     /locus_tag="SFZ84_001695"
                     /inference="COORDINATES: protein motif:HMM:NF025387.1"
                     /note="This protein contains a domain related to
                     Tuberculosis Necrotizing Toxin, which is the C-terminal
                     effector domain of outer membrane channel protein CpnT,
                     and which has a lethal NAD+-glycohydrolase activity;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycohydrolase toxin TNT-related protein"
                     /protein_id="HEG8203777.1"
                     /translation="MAKKRTILIPRIEDINISPDTSCMHPILEDNTLVCLHGGRVKLK
                     AKKAKRIKSDNVPIMLDNEIQGASISGCLNPPILGGPCTKVAMVFAYTYSDHKVNNKH
                     SVLQMGLIGMSIKGYPIFAIPKKNKIKFALAKIQASPLAKIKFDRIRWEGGGKLGAAQ
                     RRRREKSKEKAKMLLYLENENKKGKVSDKEVHLYKHNGIWPKDTPKPRSFDYIGENGK
                     IKYPDDDGYKIPPIPKEITLKKGMKLDRYGDNLGSFVCPFKEKKGAIPYEKRSLPYEN
                     NEAMQKTYKRYEVLEDINMESVERKIKMSGDDKLIEKIKELK"
BASE COUNT          726 a          192 c          314 g          486 t
ORIGIN      
        1 aaaaaaacaa attccattct ccaaaaatag gtaaaatatc tccatatttt gaacaagaag
       61 gtggaggaac acagattaaa cttcctattt ccatagaaaa cttaatacaa ttaggtttta
      121 tcaaacaaat accataataa aggataaaaa atgacaagag aacaagcaga attaattata
      181 aaagaggaaa agttgattga tacagattgg tatccttctt ataaacattc aggagaatac
      241 catcttacta tgtggtttga ttctgataat aataaatacg aagctgttta tattggagaa
      301 aggggcggtg ttgaacttga gtattctttt gatagtgaaa aagaagccat tgataaaatg
      361 ttacagatga attataaaca aaaatatttt agcgtaaatg aagactattc aatgcaaaat
      421 agaaaagaag tggcactaag aatcatccaa gaagaaaatc tagaagtgat ttggtatgat
      481 gaagcactta aaccaatgcg agcaggtatc aaacacgata aacaaagaga taaatacatt
      541 tcttttatca ctaatgctaa agcagagatt atagaatgga aaagtattga gtttgatgga
      601 gatgaagaat ttgaaggaaa aatatataat gatgaaagta aagcccttta tgctcttatc
      661 aatcgtgcta gaatgattaa gcaaaatagg attagcttta tgtaaatact ttccttatga
      721 tttaatttaa tcttagcgag tttaaaaacc cacaagactt ttcatggcta aaaaaagaac
      781 aatccttatt cctagaatag aagatattaa tataagtcct gatacttctt gtatgcatcc
      841 tatcttagaa gataatactt tagtatgctt acatggaggt agagttaagt taaaagcaaa
      901 aaaagctaaa agaataaaat cagacaatgt tcctattatg cttgataatg aaatacaagg
      961 agctagtata agtggatgtt taaatccacc tatactagga ggaccttgta ctaaagtagc
     1021 tatggtattt gcttatactt attcagatca taaagttaat aataaacatt ctgtgttaca
     1081 aatgggtttg ataggaatga gtataaaagg ttatcctata tttgctatac ccaaaaagaa
     1141 taagattaaa tttgctttag ctaaaataca agctagtcct cttgctaaga ttaaatttga
     1201 caggataaga tgggaagggg gaggtaaatt aggagcggcg caaagaagga gaagagaaaa
     1261 aagtaaagag aaagcaaaaa tgcttttata tttggaaaat gaaaataaaa aaggtaaggt
     1321 aagtgataaa gaagttcatc tttataaaca taatggaata tggcctaaag atactccaaa
     1381 acctagaagt tttgattata ttggtgaaaa tggtaagatt aaatatcctg atgatgatgg
     1441 ttataaaatc ccacctatac caaaagaaat cactttaaaa aaagggatga aactggacag
     1501 atatggggat aatttgggta gctttgtttg tccttttaaa gagaaaaaag gagcaatacc
     1561 ttatgaaaaa agatcattac cttatgaaaa taatgaagcc atgcaaaaaa cttataaaag
     1621 atatgaagta ttagaagata ttaacatgga gagtgttgaa agaaagatta aaatgagtgg
     1681 ggatgataaa ttaatagaaa aaattaaaga gttaaaag
//
LOCUS       DARGED010000178         1677 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.180, whole genome shotgun sequence.
ACCESSION   DARGED010000178 DARGED010000000
VERSION     DARGED010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.180"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            71..268
                     /gene="kcuS"
                     /locus_tag="SFZ84_001696"
     CDS             71..268
                     /gene="kcuS"
                     /locus_tag="SFZ84_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG8203778.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(308..721)
                     /locus_tag="SFZ84_001697"
     CDS             complement(308..721)
                     /locus_tag="SFZ84_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8203779.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            783..>1677
                     /gene="ciaB"
                     /locus_tag="SFZ84_001698"
     CDS             783..>1677
                     /gene="ciaB"
                     /locus_tag="SFZ84_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG8203780.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDF"
BASE COUNT          658 a          191 c          280 g          548 t
ORIGIN      
        1 atttcttgta taggaatttg cttagataaa attaaaattc ctcttaaaga aactaagtat
       61 attaagattg atgaatttca aaaaatttaa gtattattat gaaaaagccg aaaggttttt
      121 tcatcccttg gtgggacttt ctagttatga taagtattta gaacacatga aacaaaaaca
      181 tccaggaaaa attccaaaaa ccagagggga atttttcaaa gaatgtctag ataaaaaata
      241 taatagtggc ggtttaaata aatgctgata agcttaaagg ataaagtttt atcatacaaa
      301 ataagcttta agcatttaaa aagccatgaa ttcttttaag ttcttcacta ataggttttt
      361 tctttccatc tcttgtaaca cttacataag ttactaaagc cgaagttaca ttaatgcaag
      421 aagtacaacc ttgagaatcc actctttgag ctgtaacttc tacttcaacg ctgattgaag
      481 tgttgcccac atttacaact ttagagtaac aagaaattat atcgcctata aaaacaggtt
      541 ctttaaaaac tactttatcc atagagatgg ttacaacgcg ttcaggagaa agttctcttg
      601 ctgcgatagc tcctgctaaa tcgatttgtg aaagtatcca tccgccaaaa atatttcctg
      661 ctggatttgt gtcacttggc atagctacaa tttttaattt tggttctccc atatctctca
      721 tttttactcc ttattttaaa aaatgaatta taattaaaaa agttaaaaag gagaataaaa
      781 gtatgaataa ttttaaagaa atagctaaat tggttagaaa atacaaagaa agaaataatg
      841 cgttatatga gtttttagac aaagaagatg tgggcgagta ttttagatct ttgatttctt
      901 taagtgagtt aaaacaagat aaaacaacta tgctagccat acttaggcgt ttggttgatt
      961 taaaggaaga aaatttagtt caagagtgga aaaaaaacaa ctttaaggaa gataagatta
     1021 tagagttaaa acataagttc tatgaagagg ttagaaagtt ttatgaaaaa gaacatcaaa
     1081 atttaattaa tgaaataaaa gagaaaaagc ttttaaataa tttttatcag tctttaatac
     1141 aaggagtgca taatataggt ttaattatga atatttttga aatttcttgg actaaagaaa
     1201 ttatagaaaa aaataataaa attttatcta ctcaatttcc aaatttagat gatgcaatgg
     1261 aatttttacg taaaaatcat ttatatcaaa aaactccaga aggagaaatt tgtgagcgaa
     1321 gctatggtgt tctagttaga ataggaaatt tatggaaatt tgttccttat gcgagatttt
     1381 tcgagaatga aattttaaaa ttagaatttg cttttgaaaa tatgattgat cagcttaaaa
     1441 tatttgctag cagcgaagag gaaaaagctt atatagaata ttttgaaaaa ttaaaattag
     1501 cgttttgtga aaaagatgaa gatagggtta taaaagcttg gcaagaagct gaatttgctt
     1561 ggatgaaagt aaaatcacct ttacaagtgg gacatccttt agaatattat gaagataatt
     1621 atactcatgc ggtggcatta gaatgggata taagaataga agatgaaaat gattttg
//
LOCUS       DARGED010000179         1662 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.181, whole genome shotgun sequence.
ACCESSION   DARGED010000179 DARGED010000000
VERSION     DARGED010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.181"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1274
                     /gene="recG"
                     /locus_tag="SFZ84_001699"
     CDS             <1..1274
                     /gene="recG"
                     /locus_tag="SFZ84_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG8203781.1"
                     /translation="DLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANWLKDLPFSLTK
                     DQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAILMAPTSILAY
                     QLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLESHNAVLVMID
                     EQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPFKKD
                     ITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQAKEYWQSHYE
                     KVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVGAERLGLATLH
                     QLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNRLSGDLLDGFM
                     QHGNEFKFFDFSKDEEILEKAKKDLAKKLPN"
     gene            complement(1271..1654)
                     /gene="ctb"
                     /locus_tag="SFZ84_001700"
     CDS             complement(1271..1654)
                     /gene="ctb"
                     /locus_tag="SFZ84_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG8203782.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
BASE COUNT          565 a          242 c          284 g          571 t
ORIGIN      
        1 aagatttaaa atatatagaa atatataatt ttttaaagcg tttaaaagct aaaaaaacgc
       61 attttaaagc tcatcaaatc aatgttttta atatagccaa ttggcttaaa gatttgcctt
      121 tttctcttac taaagatcag cttaatgcct taaaagacat agaaaaagat ttacactcaa
      181 aagaagccaa aaggcgtgtg attatgggtg atgtagggtg tggtaaaacc ttggttttac
      241 ttggtgcggc tttgatggtt tatcctaagc aagctatttt aatggcacct actagtattt
      301 tagcgtatca gctttatgaa gaggctaaga aatttttacc tgattttatg aatattttgt
      361 ttattaaagg gggtaaaaaa gaaaaagatt tagaacaaaa tatccaaaaa gcaaatcttg
      421 ttataggcac tcatgcttta attcatttag aaagccataa tgccgtactt gtaatgatag
      481 acgaacaaca tcgttttgga tcagctcagc gtgagaaaat tcattcttta agtaaacaag
      541 aatttgcccc tcattttata cagttttcgg ctacgcctat tccaagaact ttaagcatga
      601 tacaatctga acttttaaat tttagtttca ttaaacaaat gccttttaaa aaagatatca
      661 caacttattg tatacaaaat gaaggctttt ctaagcttag cgagaagatc aaagaagaaa
      721 tcgctaaaaa tcatcaaatt atcattattt atcccttagt gagtgctagt gataatattc
      781 cttatctttc tttagagcag gctaaagaat attggcagag tcactatgaa aaagtttttg
      841 taactcatgg gaaagataaa caaaaagatg aaattttaga gcgttttaga gatgagggaa
      901 atattttact aagcactaca gtggtggaag tgggcatttc tttgccaaga ttgagtatga
      961 tagtgattgt aggagcggaa cgtttaggac ttgctacttt acatcaactt cgtggccgtg
     1021 taggtcgtgt aggacttaaa agtacttgct atctttatac taagcttaaa gaaattccga
     1081 gtcgtttaaa agaatttgct agcactttag atgggtttaa aatagcagag cttgatctta
     1141 aaaatcgttt gagtggagat ttgctcgatg gttttatgca acatggaaat gagtttaaat
     1201 tttttgattt ttccaaggat gaggagattt tagaaaaggc aaaaaaagat ttggcaaaaa
     1261 aattgccaaa ttaatgtccg ccgtacttgt aaagcatatt ttgaaaatgt gaagctatca
     1321 tttgtgcacg ctgtaaaatg acatttttca tttcttcatt ataaactata tttaaacttt
     1381 cttcaaaaag ttttagccaa atttcaaaaa actcttgagg aaaaggaggt agatctaagt
     1441 gcttttttaa gggttgccca ttataatcac cttcgcctaa aagcatacct gcccaaaaat
     1501 ttcctatttt tgctttatgt tctttccatt cttcatcgct tgttccaata gcattgttaa
     1561 aaataggacc taaatcctta tcttttctaa ctttttcata aaatatttcc atgagttttg
     1621 ctatgctttc ttgattaatt gtttcaaatt tcatataagc ct
//
LOCUS       DARGED010000180         1636 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.182, whole genome shotgun sequence.
ACCESSION   DARGED010000180 DARGED010000000
VERSION     DARGED010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.182"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(58..471)
                     /locus_tag="SFZ84_001701"
     CDS             complement(58..471)
                     /locus_tag="SFZ84_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HEG8203783.1"
                     /translation="MKKVFLDTNIFIDFFDETRVNNEQAKQLIYFLISNEIKIVFSED
                     MISTIAYLIDKNKLPALMSFFKSTITNPYFEIVSFGSSVINMACDFHLQNKGDFEDYL
                     QYFCAEKENCCAIYTMDKNFPNLKIPIKRYGDTNI"
     gene            complement(468..1340)
                     /locus_tag="SFZ84_001702"
     CDS             complement(468..1340)
                     /locus_tag="SFZ84_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG8203784.1"
                     /translation="MAKIVNLENRDTKKLYSSVQEKIDATTGEVTTVISSFLQREKTK
                     DDFIKLFVENISFLTDNLSNPALRVVLMMVKNLNYQNVFNYNSDFVHYFESKKILGKS
                     SVYRAIKELEDKQVIFKVTEEQRKEYDIIGSNSYIMNPQIIGKGSFKDLKKLRQTVVK
                     TFDFDNLEFKQEISVESEYEGFEQVKKNPDNYVIEEVKQIASNKNTIENQVIIFEKDN
                     DQDYPKEEIIGVKVDDNKEEQPALFVENKNEQNAKAFINKFAGMFNGAFHPSKTVKEM
                     KKESLENDLKEGNI"
BASE COUNT          551 a          251 c          153 g          681 t
ORIGIN      
        1 ttatcctcta atttctgaat attttaaata tcttaacacg agatagatga aatattatta
       61 tatgtttgta tcaccatatc tttttatagg tatttttaaa tttggaaaat ttttatccat
      121 agtataaatt gcacagcaat tttctttttc tgcacaaaag tattgcaaat aatcttcaaa
      181 atcaccttta ttctgcaaat gaaaatcaca agccatatta ataacacttg agccaaacga
      241 tactatttca aaatatgggt ttgttattgt gcttttaaaa aaagacataa gagctggtag
      301 cttgtttttg tctattaaat aggcaatagt tgaaatcata tcttcagaaa atacgatttt
      361 tatttcattt gatattaaaa aatatattaa ttgcttagct tgctcattat ttacccttgt
      421 ttcatcaaaa aaatcaataa aaatatttgt atcaagaaat acttttttca tatattaccc
      481 tcttttaaat cattctctaa agattctttt ttcatttctt taactgtttt gctcggatga
      541 aaagctccat taaacatacc tgcaaattta ttaataaaag cttttgcatt ttgttcattt
      601 ttattttcaa caaaaagagc aggttgctct tctttgttat catccacttt aacaccaatt
      661 atttcttctt ttggataatc ttgatcgttg tctttttcaa aaataataac ttgattttct
      721 attgtattct tatttgaggc tatttgtttg acttcctcaa taacataatt atctggattt
      781 ttcttaacct gttcaaatcc ttcatattca ctctcaactg atatttcttg tttaaattct
      841 aaattatcaa aatcaaaagt tttaacaaca gtttgtctta attttttaag atctttaaaa
      901 gaacctttgc ctatgatctg cggattcata atatatgaat ttgaacctat gatatcatat
      961 tcttttcttt gttcttctgt tactttaaaa ataacttgct tgtcttcaag ttcttttatt
     1021 gcacgataaa cactcgactt ccctaaaatc tttttacttt cgaaataatg aacaaaatcg
     1081 ctattatagt taaagacatt ttggtaattt aaatttttaa ccatcatcaa aacaaccctt
     1141 aaagcaggat ttgaaagatt atcagtaaga aaactaatgt tttcaacaaa taatttaata
     1201 aaatcatctt tagttttttc tctttgtaaa aaagaactta ttacggtagt aacttctcca
     1261 gttgtagcat caattttttc ctgaacacta ctatataatt ttttagtatc tctattctct
     1321 aaattaacta tttttgccat tattaacctt ttcccaaaaa ataaaataca ttataacaca
     1381 tttttcccaa aaaatgataa tttcccaaat aaaaacacaa attataattc atatgatgaa
     1441 atttattaat tattttggga aaaactactt tttaattttt ttccaccacg agcagttttt
     1501 ctcccactga tgggaaaatc aaaaaccttt acaaacagct attttataga tatttagaag
     1561 tatttttcat ttaatctttt tttaaaaaat agtttttgtc ttttttctta tcttctagat
     1621 tatctatagt tttatt
//
LOCUS       DARGED010000181         1615 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.183, whole genome shotgun sequence.
ACCESSION   DARGED010000181 DARGED010000000
VERSION     DARGED010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.183"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1615
                     /locus_tag="SFZ84_001703"
     CDS             <1..>1615
                     /locus_tag="SFZ84_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203785.1"
                     /translation="ELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFKKDD
                     IFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFEDNL
                     EILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIHNDF
                     YQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQEFL
                     KERRAKVENAIIVSTGPSLIKQLPLLKKYANKATIFCADSAYVILGKYGIKPDYVCML
                     ERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAASLK
                     LDEYGYLGVGHSVSNMIYELAGALRFESIIFIGQDLAYGEDGSSHPKEHIHGSQGEEI
                     RGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEGGARIEGTIE
                     KPFLWACENLLDKDLNKPFDFPKFLDKKLAKEKLEKTKKYLQKSILESKEFIKKTQTQ
                     LQKLRYTLEKNDKNFQTLEKIKNDLLNLF"
BASE COUNT          629 a          225 c          234 g          527 t
ORIGIN      
        1 aagagctttt tttaaaaaat actcaagctt tgtttgaggt cgatgagttt ttagcttgta
       61 cactgagatc acttaaatac ttaacttttg cacttatcca agatgaaaat ggaataaatt
      121 ttaaaaaaga tgatattttt ctttatgaaa atcccaataa agagctttta gaaaacctta
      181 ctctgtttaa aaccgaatat aacaaatatc ctgttttgtt tttttatggc tttggaaatg
      241 gaatgtttta taaaacttta tgtaaaaaca aacaacataa acacattatc atttttgaag
      301 acaatcttga aattttaact ttagcttttc atttatttga ttttagcgaa gaattaaaaa
      361 aagagcaact aatacttttt tatactccaa atattaatac agcacaactc accacacttt
      421 ttacttatga aatcattcaa aaaagtgtaa aaatttttaa tctttttatc cataatgatt
      481 tttatcaaca attttatagc actcaaatac aaaatataaa tactcaactg atagaaatga
      541 tacgatttat cgttttaaac aaaggtaatg atccacatga ttctttagta gggatcaaac
      601 ataccctaga caatctccct aaaatgttaa atcatggaat ttttcaagaa tttctcaaag
      661 aaagaagagc taaggttgaa aatgctatca ttgtttctac aggaccaagt cttataaaac
      721 aacttccttt attaaaaaag tatgctaata aagctacgat tttttgtgca gatagtgctt
      781 atgttatcct tggaaaatac ggtataaagc ctgattatgt ttgcatgcta gaacgtgatg
      841 atatagtttc taaatgtttt gataatgatt ttggcgattt taacaaaggc atacttttca
      901 tacttgcttc tgtggttcac aaagaagtat tagatttttt agaaaaagat caaagaactt
      961 atatgcttgt acatcgccct ttaaattttg cagctagttt aaaacttgat gaatatggat
     1021 atcttggagt aggacacagt gtttcaaata tgatctatga actagcagga gctttaagat
     1081 ttgaaagtat catttttata ggacaggatt tagcttatgg cgaggatgga agttcacatc
     1141 ctaaagagca tatacatgga agtcaaggtg aagaaatcag aggagaaaaa tatacactag
     1201 cttatggggg aaaaggcaaa gtaagaactc aactcacttg gaatttattt cgtcaagctt
     1261 ttgaaaaaga tatattttgg gcaaaagaaa aactcaatat caccacctac aactgcaccg
     1321 aaggtggagc aaggatagaa ggaaccatag aaaaaccttt tttatgggct tgtgagaatt
     1381 tacttgataa agatttaaat aaaccttttg attttccaaa atttctagat aaaaaactag
     1441 ccaaagaaaa attagaaaaa acaaaaaaat atctccaaaa aagcatttta gaatccaaag
     1501 aatttataaa aaaaactcaa actcagcttc aaaagcttag atacacttta gaaaaaaatg
     1561 acaagaattt tcaaactctt gaaaaaatca aaaatgatct tttaaatctt tttaa
//
LOCUS       DARGED010000182         1591 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.184, whole genome shotgun sequence.
ACCESSION   DARGED010000182 DARGED010000000
VERSION     DARGED010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.184"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            203..1324
                     /locus_tag="SFZ84_001704"
     CDS             203..1324
                     /locus_tag="SFZ84_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEG8203786.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEALCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1342..>1591
                     /locus_tag="SFZ84_001705"
     CDS             1342..>1591
                     /locus_tag="SFZ84_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8203787.1"
                     /translation="MQNSLEAYTMKYNENGYGLLFPDGHVVRFYERILKYKLNKINGN
                     LLDFGCGNGVHSAYFQSKGFKTFGIDIVPSLKEIWEQNI"
BASE COUNT          635 a          173 c          268 g          515 t
ORIGIN      
        1 agaactttgt aataaaattt gtaagaattt aaaagaagat gatgaaaatt tttaccatcc
       61 aaaaatcttt aaaaaggcct tataaaaagg aattttaggt agaaaaataa aacaaacata
      121 agtgatattt tataaaataa gcaaatatta atttaatatt ttatataatc taatattttt
      181 attaatattg aagggatggg gaatgattta ttgtgatcac tgcgtgatgc caaatactag
      241 acctggtatt aattttacaa aagataaaga aggtaaaaat atctgttcag cttgcatcaa
      301 tcataaaaat aaagaaaata ttgattataa agcaagattt aaagagcttg aagccttatg
      361 cgataaatac cgcagaatga atggaaaatt tgaatatgat tgcgctattg ccgtaagtgg
      421 aggtaaagat tcgcattttc aagtgcatat catgaaagaa aaacttggaa tgaatcctat
      481 tctttttagc gttgaagata atttcaccat gactgaagca ggtaagaaaa atcttaaaaa
      541 tttaagtgaa acttttggtt gtcatattat tagcttaaag cctgatatca aaactcaaaa
      601 aaaagttatg ctaaaaacct ttgaaaaata tggaaaaccc acttggttta ttgatagact
      661 gatttacagc tatccttttg ctatggcttt aaaatttaat acacctttat tggtttatgg
      721 agaaaatgtt agttatgaat atggaggtag tgataccgaa gaaactccta gcgctaaaga
      781 aatattttta aatggtgtag ctagtgattt aaatataaat gaatttatag atgatgaaat
      841 caaagaagaa aatttgcaac tctttttcaa tccaaacaaa gataaactcg ataaacttaa
      901 ccctatctat ctaagttatt ttgtaaaatg gaattcttat agcaattata tttttgctaa
      961 aagtcgtggt tttactgatc tagaaggcga atgggataga acaatgtgtg cagaaaattt
     1021 tgatcaagtt gatagtatag gctatatcct acacgcttgg atgaaatacc ctaaatttgg
     1081 tcatgcttgt gcgagtgatt acgcagctcg tttcgtgcgt tatggacttt taagcagaaa
     1141 agaagctatt gaacttgtgc aaaaaagaga tcataagctt gacaataaat gcgttgaaga
     1201 tttttgcaat ttcataggta ttagtaaaac tacattttgg aaaatagtag aaaaacatta
     1261 caatatggat ttattttata aaaatgattt tggagaattt aaattaaaaa acaaattaca
     1321 ataaaaatat aaaggaaaaa aatgcaaaac tcattagaag cttatacaat gaaatataat
     1381 gaaaatggat acggattact ttttccagat ggtcatgtag tacgttttta tgaaagaatt
     1441 ttaaaataca aactaaataa aataaatgga aatttacttg attttggttg tggcaatggt
     1501 gtacattcag cgtattttca aagcaaaggg tttaaaactt ttggaataga tatagttcca
     1561 agtttaaaag aaatttggga gcaaaatatt a
//
LOCUS       DARGED010000183         1571 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.185, whole genome shotgun sequence.
ACCESSION   DARGED010000183 DARGED010000000
VERSION     DARGED010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.185"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..1219)
                     /locus_tag="SFZ84_001706"
                     /pseudo
     CDS             complement(1..1219)
                     /locus_tag="SFZ84_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812139.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
BASE COUNT          488 a          266 c          145 g          672 t
ORIGIN      
        1 gaagatattt atcatctttt ttatcttcaa aaatcatacc attatcattt aaaacctcat
       61 taatcaaagc ataatcatta taaaaatact cttgcaaaag cggaataatt ttattttgaa
      121 aaactttttt taaatcttct aaattttcaa cacttacaaa aaatgcatga cctatggttt
      181 tttctctatc tagtaaatat tctatacgag tgtttatagc ttttaataat tcttgtaaat
      241 taataccttc acaatccata gataatttgc tcacatcagg catcatctca ataaattcaa
      301 atcttcttct taaagctgta tcaagagaag ttatgcttct atcggctgta ttcatagtgc
      361 ctatgatata aacattttta ggtactccaa atttttcacc gctataaggc aaagtcactt
      421 ttaactcttc tttttcacct atccttttac taggttctat caaggttata agctcaccaa
      481 aaatcttact tacattacca cgattgattt catcgatgat gattatataa ggttttaatt
      541 ctggcttttc actaggatta ttatctactt tataatcttg ttctcgttct ttaaacaatt
      601 taactagctg aaaatagtaa ctatcgattt gtcttctatg tttattattt aaaatttgct
      661 taatgcttct tccgtttata atcttatctt tattttccaa aagcgtttta aaaatttcta
      721 aatttaaata caaatttgca ttagtatcat ctgtgataat tctatatttt tcattatatt
      781 cttctaattt aaatccacca ctttgaattt tttctataaa tttttgttga tctactaatt
      841 catctaaaaa aatttctatt ttgttttcta aatcttcact ctttacaaat tcttcttgtg
      901 ttaataaaga tactttgtaa ttatccaaag cttttttaca aagttcttta aaaattccgt
      961 cttttatttc gtattctact tccttagaat tttctttgct atctatgcga ggctttatgc
     1021 cttctacaaa ttcttcatat ccatagcttt gatgaaaagt ggtaaaaact atttgtccat
     1081 tttttacata ctcatcaaat tttgcttttt tctcatctct gttttctaaa ttttcaccta
     1141 aaatttctaa agctttatct atagtatgat aagtttttcc tgtccctgga ggcccataaa
     1201 gaatttgatt taaaggtata ttttgatttt caattagtat cttttcattt tcgctttgct
     1261 taatcgcact aagatttgag ttgcttaata tatcttcaaa taatggttta gcatatgact
     1321 caacttcatt tttacctaaa acactatatt ccaaaaatct attcgaagag tattttctaa
     1381 tattattaat actagcaata atttctatct tttgattttt tatttctact ttaaattctt
     1441 tctcaccacc tcttgtcttc aaatacttaa ccatatcttt tgaaacataa tttttataag
     1501 cattgacata ttttacaaat tccaaataat gagatttaat acaagcatgc ggacatcgat
     1561 tgctgctctt a
//
LOCUS       DARGED010000184         1550 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.186, whole genome shotgun sequence.
ACCESSION   DARGED010000184 DARGED010000000
VERSION     DARGED010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.186"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..403
                     /locus_tag="SFZ84_001707"
     CDS             <1..403
                     /locus_tag="SFZ84_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203788.1"
                     /translation="ENFNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILK
                     DSCSEFDELWMIDEKSYLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHV
                     AYLDKQSKPSINILDELIKQIAAVNEQYNES"
     gene            369..>1550
                     /locus_tag="SFZ84_001708"
     CDS             369..>1550
                     /locus_tag="SFZ84_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG8203789.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCEKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
BASE COUNT          602 a          153 c          254 g          541 t
ORIGIN      
        1 tgaaaatttt aataagtata aagttaatta ttctttagct ttattttcta tagtaaatta
       61 ccgtttcatt atggaaaaat acggtatggg aagtttgaat gaaatttttg ttcgatttaa
      121 aaaaatttta aaagattctt gtagcgaatt tgatgaactg tggatgatag atgaaaagag
      181 ttatttgatt gtttcgccag gaaaaagcaa agatgaaatt acacagcttg taaatacaaa
      241 tcttaaaact atagaaaatt ttagatttat ttataagcaa gatattataa ctcctaaaat
      301 tcacgtggct tatcttgata agcaaagtaa gccaagtatt aatattttag atgagttaat
      361 aaagcaaatt gcagcggtta atgaacaata taatgaaagt tgagaatttt ttagctcaaa
      421 aaagtataaa ttacgataaa attgatcgtt ttttgatgtt tagaatgtat gaaaaatata
      481 agaaatattt taaaaatatt cccataattc aacttatagg cacaaatggt aaaggtagca
      541 cgggtagata tttaacccaa cttttagaaa atttaaatta taaaataggg cattatacta
      601 gtccgcacat tttcagtttt aatgaaagat tttatcttga tggtaagatt gcaaatgatg
      661 aagaattaga acaagctcat ataagacttg aagaaatttt taaacaagac ttgcaaaaat
      721 taagttattt cgaatatgct acttttttag ctatgatttt atttcaaaaa tgtgatttta
      781 ttgttttaga agcaggagtg ggtggagaat atgatgctac ttctgttttt gaaagaagaa
      841 tgaatatttt tacaagaatt ggatttgacc atattcaaat tttgggcaat tctttagaag
      901 atattgcaag aaccaagctt aaagttatgg cgcctatagc acttataagt gatgagcaag
      961 agcaaaatgt tttaaattta gcaaaaaaaa ttgctttttt aaaaaaagct aatttgcaag
     1021 tttcttcctt aaatcctttt ttgaaagaaa aatttgagat ttattgtgaa aagtttgttt
     1081 taccttgttt tttaaagcat aatttaaagc ttgcattaaa ggcttgtgaa attttaactt
     1141 cacaagaaaa aaccttagaa gctttaaaaa agttacaaga gttaaattta caaggaagat
     1201 gccaagaaat ttctccaaat ttttttgttg atgtgggtca taatcccatg gctgctaagg
     1261 ctatgcttga taaatttcaa ggagaaaaaa taaatcttat ttataatgct tatttggata
     1321 aggatatttt tcaaatttta aatacattaa agcctattat tgatacaata caaatatata
     1381 aatataaaag tgcagaacga aagctggccg atgatgaaat ttatagtatt gcatcaaagc
     1441 taggtataca atgcaaagaa tttgtaaaat tagaagagaa taaaaaaaat ctagtttttg
     1501 gttcttttat gctggtagaa aattttttaa aggagtggtg tggtaaaaaa
//
LOCUS       DARGED010000185         1501 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.187, whole genome shotgun sequence.
ACCESSION   DARGED010000185 DARGED010000000
VERSION     DARGED010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.187"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1113)
                     /locus_tag="SFZ84_001709"
     CDS             complement(<1..1113)
                     /locus_tag="SFZ84_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8203790.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     EEINKSADKTGVRATFTVETRGMAAVRAGTTSDDFAINGVTIGQVAYEDGDGNGALVS
                     AINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFINANMKENYGRLSLVK
                     NDGKDILISGTGLSFTGFGANSFISQASVSLRESKGR"
     gene            complement(1259..>1501)
                     /locus_tag="SFZ84_001710"
     CDS             complement(1259..>1501)
                     /locus_tag="SFZ84_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8203791.1"
                     /translation="ITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDF
                     AAESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          438 a          297 c          248 g          518 t
ORIGIN      
        1 tcttcctttt gattctctta aagaaacaga agcttgagaa ataaaactat ttgcaccaaa
       61 tcctgtaaaa gaaaggcctg ttccgctgat taaaatatcc ttaccatcgt ttttaactaa
      121 agacaagcgg ccataatttt ctttcatatt ggcattgata aaggcacctc caccgatatt
      181 accatcgatt ttaatccctc taccctctct tgaagtaagt aaaagttgtc cattagcatc
      241 gattgaagct tcaactcctg tagtatcttt aactgaattg attgcagaaa ccaaagcacc
      301 gtttccatca ccatcttcat aggctacttg acctatagtt accccattga tagcaaagtc
      361 atctgaagta gttccagctc taactgcagc catacctcta gtttctaccg taaaagtagc
      421 tctaacacct gttttatcag cactcttatt gatctcttca gctaaggctc caagtcctgt
      481 tccaactgaa gttgaaatca caactttttg aaactgaaaa tcatctatac cgttgtagtt
      541 tttaagagta aattgcactt cgccactaga tgaaattctt cctcctgttt caaagcgtgt
      601 taaacctatc ttagaagact gggttgctcc tatggtagct tttatagttt gatttgaact
      661 tgcgccgatt tgaaattctt gattgataaa atttccactt aaaagttgtt taccgttaaa
      721 tgaagtagta tttgcgatat tgtcaagttc ttccattaaa cggttgatat ctgcttgaag
      781 catagttctt gtttttaaac tttgtccatc ttgagccgct tgagttgcct tagttttgat
      841 tgtatctaag attttaagtt gctcatccat agccttatca gcagtttgta aaatacctat
      901 agcatcatta ccattgttta tagcttgacc taaagtagct gcttgtgaac gcaaagaatc
      961 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
     1021 tctgcttaaa gacttatcca gttctctagc attaacaact gaatttgcat gtgcgtttaa
     1081 tgcaccgatg ttggtgttta tcctaaaacc cattttaaat cctttcaaaa tattgcatcg
     1141 aaaagattaa agcaagaagt gttccaagtt ttagtttaat taaaaattct agagtttaaa
     1201 ataaaaaagc ctagttctaa actaggcttg gatttgtata tattgcagct tttgtaaact
     1261 actgtagtaa tcttaaaaca ttttgttgaa cagaattagc ctgtgccatg gcataagagc
     1321 cactttgagc taagatattt gctttagagt agtttgcact ctcggctgca aagtccacat
     1381 cacggatttg tgactcagct gctttaacat ttacctgagt aacagtgatg ttgtttatag
     1441 ttgatgtaac ttgattttgc accgaaccaa tgtcggctct gatttgatca agatttgtta
     1501 t
//
LOCUS       DARGED010000186         1470 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.188, whole genome shotgun sequence.
ACCESSION   DARGED010000186 DARGED010000000
VERSION     DARGED010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.188"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1470
                     /locus_tag="SFZ84_001711"
     CDS             <1..>1470
                     /locus_tag="SFZ84_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004304651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEG8203792.1"
                     /translation="DKKALQNFELIGEIKNLQEYLKNNPNLLIKGNNLLVLHSLKKLY
                     ANKIKLIYIDPPYNTGNDSFGYNDKFKHSTWLTFMKNRLEIAREFLRDDGVIFVQCDD
                     NEQAYLKVLMDEIFGRDNFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEK
                     LEQFKSVYDSRELYSHISFCKENNISWKYTSALLNGGEKKLIATTLDGDGNEIKIFER
                     INYDIKSIGQMIKDFKMNEKEIFYHYVNKIFRTTMPQSSIRVRVLEKLKELNLSPYLI
                     SIEYTPKSGRNKGVVYEQFYNGEKLNLFAWLKDVIEIKDKQIFKKELAGTLWDFAFAM
                     TNLTKEGDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIG
                     IEQMDYIETITKERLKKVIEGEQGGISKAINWQGGGNFVYAELMPLNAIYKEKIQNLN
                     DEKELDNIYQELKTKAFLDYRVDINEILKDKEFENLDLE"
BASE COUNT          627 a          141 c          248 g          454 t
ORIGIN      
        1 ttgataaaaa agctttgcag aattttgaac taataggtga aataaaaaat ttacaagaat
       61 atttaaaaaa taatccaaat ttgctcataa aaggcaataa tttactagtg ttacattctt
      121 taaaaaagct ttatgcaaat aaaataaaat taatctacat tgatccacct tataatacgg
      181 gtaatgatag ttttggttat aatgacaaat ttaaacactc tacttggctt acttttatga
      241 aaaatcgcct tgaaattgct agggaatttt taagagatga tggtgtgatt tttgtgcaat
      301 gtgatgataa tgaacaagca tatttaaaag tacttatgga tgagattttt ggaagagata
      361 attttgtaaa tagtatagct gttaaattaa aaaatattgc aggagcaagt ggaggaggag
      421 aagataaaag atttaagaaa aatatagagt atattttaat ttatggtaaa agttatgaaa
      481 aattagaaca atttaaatct gtatatgatt ctagagaatt gtattctcat ataagttttt
      541 gcaaagaaaa taatattagt tggaaatata cttcggctct actcaatggc ggtgaaaaaa
      601 agttaatagc tacaacactt gatggtgatg gcaatgaaat taaaattttt gaaagaatta
      661 attatgatat aaaatccata ggacaaatga taaaagattt taaaatgaat gagaaagaaa
      721 ttttttatca ttatgtaaat aaaattttta gaaccacgat gccacaaagt tcaattagag
      781 tgagagttct tgaaaaatta aaagaattaa atttaagtcc ttatcttata tctatagaat
      841 ataccccaaa aagtggaaga aataaaggtg ttgtatacga gcaattttat aatggagaaa
      901 aattaaattt attcgcatgg ctaaaagatg ttatagaaat taaagataag caaattttta
      961 aaaaagaatt agctggaact ttatgggatt ttgctttcgc aatgacaaat ttaacaaaag
     1021 aaggggatac tcaatttagc aatgcaaaaa aacccgaagc tttacttcaa agaattatag
     1081 aaatttctac aaatgaaaac gacatagtaa tggatttttt tgcgggaagt ggcactactc
     1141 tagccgttgc tcataaaatg aaacgcaaat ggataggcat agaacaaatg gattatatag
     1201 aaactatcac aaaagaaaga ctcaaaaaag tcatagaagg tgagcaaggt ggtatcagca
     1261 aagcaataaa ttggcaaggt ggtggaaatt ttgtttatgc tgagcttatg ccacttaatg
     1321 caatttataa agaaaaaata caaaatttaa atgatgaaaa agaactagat aatatttatc
     1381 aagagttaaa aaccaaagct tttttagatt atagagtaga tataaatgaa attttaaaag
     1441 ataaagaatt tgaaaattta gacttagaaa
//
LOCUS       DARGED010000187         1426 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.189, whole genome shotgun sequence.
ACCESSION   DARGED010000187 DARGED010000000
VERSION     DARGED010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.189"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..595
                     /locus_tag="SFZ84_001712"
                     /pseudo
     CDS             1..595
                     /locus_tag="SFZ84_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(646..1068)
                     /locus_tag="SFZ84_001713"
     CDS             complement(646..1068)
                     /locus_tag="SFZ84_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203793.1"
                     /translation="MQSIKIGKYPTTTLSSAREKANIFNNMLTEKIDPKEQIQKEDIK
                     KSKTLIIHLNSYLEAENNLQKIKILVKIYQNLQKCSRTPDLIDIKELEFNKEDIFEEL
                     FYALGGLGGIYSVEMIQSRIANFIKILRGEPKLLLEQF"
BASE COUNT          524 a          155 c          205 g          542 t
ORIGIN      
        1 agaaaattag atttagaaca gaaaaatcag aagaaaaatt aaattatctt aatgaaaatg
       61 aaattataag gctaaataat gttttagaga aagaaaaagc aaaaaagaag tttataatag
      121 ttttagaaac tctttactga taaaacttat gctttatgga ggacttagaa tttctgaagc
      181 tttaaatgta aaactttgtg attttgaaga ggttgatgat gaaatattaa aaatatccat
      241 aataggcaag ggcggtaaag aacaatttgc atttattaaa aaagaagaag tagatgatga
      301 gcttgaatat tttaaagaaa atatccaaga tagtgattac ataatgcaaa ctagcacagg
      361 aaaacattta aatagaagta atgctttttt gattgtaaat aatatttacg ctaaagcttt
      421 gatcagcaaa aaaggacttc atttgcttag acacacttta gccatgagat taatagccaa
      481 aggaacaaac cttgtggtca tacaaaaaat tctaagacat gcaaatctaa atactactac
      541 tatatatgcc aaagcaacaa atgatacaat aaaagctgcg ttattgaata attaattttt
      601 ctaaaattga gtatttgcat agacttcaag aagaagtcta tgtgtttaaa attgttctaa
      661 taaaagttta ggttctccgc gaagtatttt gatgaaattt gcaattctag attgtatcat
      721 ttctacggaa tatatacctc ctaaaccgcc taaagcataa aataattctt cgaaaatgtc
      781 ttctttgtta aattcaagtt cttttatatc aataagatca ggagttcggc tacatttttg
      841 taaattttga tatattttga ctaaaatctt gattttttgt agattatttt cagcctctaa
      901 ataagaattt aagtgtatta ttagggtttt tgattttttt atatcttctt tttgaatttg
      961 ttccttggga tcaatttttt cagttaacat attattaaaa atatttgctt tttctcttgc
     1021 gcttgacagt gtggttgttg ggtattttcc tattttaata ctttgtattt ttttgtttaa
     1081 cctatatcta aaataaaaaa aagataatag taccttttag cgaatctttt gcttcgatgt
     1141 agagattttt tgtgtatgca tctttaatat atgttctttt tttacaatta aagttttaag
     1201 ttgcttatca ttaacaataa tcatttttaa tattcctatg ttaaaaagta tatgttattt
     1261 ttgaatttta aaatttaaca tatactataa catatacttt taaaattgtc aaaattgatt
     1321 atttgagatt attttagaag ctttcaaaca ttgctatatc atgctttaga tgattatttt
     1381 agatgattca agattattta agaaaagaag tgatggtgcg ctcaag
//
LOCUS       DARGED010000188         1411 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.190, whole genome shotgun sequence.
ACCESSION   DARGED010000188 DARGED010000000
VERSION     DARGED010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1411
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.190"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(98..448)
                     /locus_tag="SFZ84_001714"
     CDS             complement(98..448)
                     /locus_tag="SFZ84_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4299 family protein"
                     /protein_id="HEG8203794.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEERILIRA
                     MSLEELESLELKGW"
     gene            complement(531..1097)
                     /locus_tag="SFZ84_001715"
     CDS             complement(531..1097)
                     /locus_tag="SFZ84_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203795.1"
                     /translation="MKYYKMMYNGQHNDVDNWINCIKPDIKNNDKYALLESKPITNWQ
                     TPSFEIDKDDGKILTDLISNVYNWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVIKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEIPV
                     FVSSEFRKIVRENNLLGFSFSEVKVYED"
     gene            complement(1097..1390)
                     /locus_tag="SFZ84_001716"
     CDS             complement(1097..1390)
                     /locus_tag="SFZ84_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEG8203796.1"
                     /translation="MQTHHIATNKSKKYTPKFQEILNSYDLKLNGDWNKVKMPHRGRH
                     PNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKNNPAILHKDYYKERK"
BASE COUNT          452 a          226 c          134 g          599 t
ORIGIN      
        1 aaaattttat ctacaccttt tttcatattt acaatatcta aattttcatc agataaaaat
       61 tctataagtt tatttaaaaa tataggttga ggaagcatta ccacccttta agctctaagc
      121 tttcaagctc ttctaaactc attgctctaa ttaaaatcct ttcttctgat tgaattaaag
      181 aaaaatcttg caatttctct aaagcttctt tatactctaa ataccccaaa ggctcatctt
      241 tgctaatgct aaaaaaactc agcctccatt tggtttcttt atcttcatca tctaattcaa
      301 aattttccca aggtttttta aaaagaatag tatctgtatc ttcacttagg gtgaaattta
      361 ttattaaccc atctggtgtt tcataaagtt taggcatagc ttcataagct tcttcccaac
      421 gcctttgtaa aagttttaaa tcttccataa atttttcctt aaatataaaa tgaaattata
      481 actaaaaatc tttttatatt aaattgcaaa tttttatagc ttttagtctt tcaatcttca
      541 tataccttaa cttcactaaa actaaaacct aataaattat tttctctcac tatttttcta
      601 aattcacttg atacaaaaac aggtatttca tcatctttaa ttctaaatat atgacttcca
      661 tcaagttttg atttttttaa aacagcttta gtaatactta aatattcatc attatcaccc
      721 atataagtat atacagaatg ttcataatct aaagcctcaa gtgattttat tacatgcata
      781 attttacaac cataataatt tatttcctga cttttaattt ctacatctaa atattgcaca
      841 caatctttaa ttaaatcttg cattaaattt ataaatttag gagagactat acgccaatta
      901 tatacattag atattaaatc ggtcagtatt ttaccatcat ctttatcgat ttcaaaacta
      961 ggtgtttgcc aatttgtgat aggtttggat tctaaaagtg catatttgtc attatttttt
     1021 atatctggtt taatacaatt tatccaatta tcaacgtcat tatgttgtcc attatacatc
     1081 attttataat atttcattat tttctctcct tatagtaatc tttatgaagt atagcaggat
     1141 tgtttttgac ttcttctttt agtttttcaa attcttttat gaatttatcc ttatctcctc
     1201 ttgctatttt atcaatttta ctcatttttt caagaatata ttcatgatat tcattaggat
     1261 gtcttccgcg atgtggcatt ttaactttat tccaatctcc atttagtttt aaatcatatg
     1321 aattaagtat ctcttgaaat tttggagtat attttttact cttattagta gcaatatgat
     1381 gggtttgaat tgatgattgt ttgttattgc t
//
LOCUS       DARGED010000189         1398 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.191, whole genome shotgun sequence.
ACCESSION   DARGED010000189 DARGED010000000
VERSION     DARGED010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1398
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.191"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..144
                     /locus_tag="SFZ84_001717"
     CDS             <1..144
                     /locus_tag="SFZ84_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8203797.1"
                     /translation="DDKAILKARMDFEKECAKLGWLLKNTQKSSIKGKEGNVEYFYYY
                     IKN"
     gene            110..964
                     /locus_tag="SFZ84_001718"
     CDS             110..964
                     /locus_tag="SFZ84_001718"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG8203798.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQITKDIDQARE
                     LLRKNDER"
     gene            951..>1398
                     /locus_tag="SFZ84_001719"
     CDS             951..>1398
                     /locus_tag="SFZ84_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8203799.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNS"
BASE COUNT          516 a          139 c          258 g          485 t
ORIGIN      
        1 gatgacaagg caatcttaaa agcaagaatg gattttgaaa aagaatgtgc taagttaggt
       61 tggcttttaa aaaatacgca aaaatcaagc attaaaggaa aggaaggtaa tgttgaatat
      121 ttttactact atatcaaaaa ttaatattac ttctttagcc ataggttgtt ttgatggtat
      181 gcatttagga catctaaaac ttgtaaaata tttagatgag aatggggctt tgctagttat
      241 taataaattt aaaggtcaat ttctttgctc aaatcgtcaa aaagaagaaa tttcaggaaa
      301 aaaagttata gaagtggatt ttgaaagtat aaaatcttta gatggtaaag attttttaag
      361 ctttttgaaa aaagaattta ccagtttaaa atttatagtc gtgggttatg atttttcttt
      421 tgggaaaaat agggcttata gtgctaaaga tattgagttt ttaagtggga taaaaactat
      481 aatagttgat gaatttagca taggtggaat aggtgttcat gcaagtttaa ttaaggattt
      541 tttatcaaga gcaaatttgc aaaaagcaaa agaattttta gggagaaatt atagcatcaa
      601 aggaaaggta attaaaggac aaggcttagg ttctaaagaa ctttttgcaa ctataaattt
      661 agattgcgaa ggttattttt tgcctcaaaa tggtgtttac gctactttgt taaaaagtca
      721 aagaaaaact tataaaagtg tgagtttttt aggtgtaaga tcaagcgatg aaaattttgc
      781 tatagaaagt catattttag aagaattggg tgaaaatttc acgcaaggag agttttttga
      841 actcgagttt atatcttttc taagagagaa tcaaaaattt caagatctaa aaaaacttaa
      901 aaatcaaatt actaaagata tagatcaggc tagagaatta ttaaggaaaa atgatgaaag
      961 atgaactttt taaacaaagc cctaaaaaac aatttgaatt tgataaaagc gtggctagtg
     1021 tttttgatga tatgatcaat cgttctgtac cattttatag agaaaattta gaactttgtg
     1081 gcaatttatt ggctaaaatt ttacctacaa atgcaagtgt ttgcgatttg ggctgctcaa
     1141 gtgctaattt tttgattttt ttggcaaatc taagaaagga ttttaaactt tttggcgtgg
     1201 ataattctgc ttccatgctt gaagttgcaa aatcaaaagc taaagcttat gggcttgata
     1261 taagtttttt tgaagctaat ttatgcgaat ttgatttttt tacttgcgat gtttttgtag
     1321 caaattatac catgcagttt attcgtcctc ctaaaagaca agaattgctt gatcaaattt
     1381 ataaaaattt aaactcta
//
LOCUS       DARGED010000190         1392 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.192, whole genome shotgun sequence.
ACCESSION   DARGED010000190 DARGED010000000
VERSION     DARGED010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.192"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..867
                     /locus_tag="SFZ84_001720"
     CDS             <1..867
                     /locus_tag="SFZ84_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203800.1"
                     /translation="PNNLEYQCKIEKDTQILSQEQIISYVKELYSKNTMIIKNYIDTI
                     NKNHGIKPFVFNDEIYDQLGEVGILTKEQANNFKDKSYIKKNPILLAMLDYLAKQNKK
                     DEDYLITFDDEYFYAYLVWSLKDFLLELSYGLFQDETKLLFNPAAYMDDTKIDYKNLN
                     EEINKRYEKILLDMGFEGENGYFNDYYDYGFGNNGIFKFNIYDYFAYDEIGVRPYVSP
                     RSPFDSPNFVYSDGNYHGDAKLIPSALGKYYFELSYQKGVYIELLHPYYPSIKDLPEG
                     WDNKMLEKANLK"
BASE COUNT          517 a          183 c          210 g          482 t
ORIGIN      
        1 ccaaataatt tagagtatca atgtaaaata gaaaaagaca ctcaaatttt aagccaagaa
       61 caaatcattt cctatgtgaa agaactttat agtaaaaaca caatgataat aaaaaattat
      121 attgatacaa tcaataaaaa ccatggcata aaacctttcg tatttaatga tgaaatttat
      181 gatcaattag gagaagttgg cattcttaca aaagaacaag ctaataattt taaagataaa
      241 agttatatta aaaaaaatcc aatattgctt gctatgcttg attatttagc aaaacaaaat
      301 aaaaaagatg aagattattt aatcactttt gatgatgagt atttttatgc ttatttggtt
      361 tggagtttaa aagatttctt attagagctt tcttatggtt tgtttcaaga tgaaaccaag
      421 cttcttttta atcctgcagc ttatatggat gacacaaaaa tagattataa aaatttaaac
      481 gaagaaataa ataagcgtta tgaaaaaata ttgcttgata tgggatttga aggagaaaat
      541 ggttatttta atgattatta tgattatggc tttggcaata atggtatttt taaatttaac
      601 atatatgatt attttgctta tgatgaaata ggagtgcgcc catatgtttc tcctagaagc
      661 ccttttgata gccctaattt tgtctattct gatggaaatt atcacggaga tgcaaagctt
      721 atcccttctg ctttaggaaa gtattatttt gagctttcct atcagaaagg agtttatata
      781 gaacttttac acccttatta tccaagcata aaagatttac cagaaggttg ggacaataaa
      841 atgctagaaa aagctaattt aaaataaata tgagcatcca tgaaaaaacc tttttacaaa
      901 cttaaaagat tttatatacc ttgtggtgtg cttatagctt tgattatttt ataagcttaa
      961 cttatcattt tttacaacga cctttagagc ttatcttttg ggatagatat gatatatcga
     1021 aattatctat taataacgaa gagaaaaatt ttaaaacaat gaaaactgtg aattactcct
     1081 actttcgcta acgcttagaa gtaggagctt cctaactaaa gccaagtatt cttagctagc
     1141 tcgaaaggct tcttgtttat agcttacacc taaattttca tataaaatat taaaacttat
     1201 acaaaaatct ttcataaatt gtttcagaag ttaaagagtt tgtttggtaa attacattaa
     1261 gggtttaagc cgcaggctga ccccctacgg ctaaattgtg aaacccctga aaggaggtag
     1321 ctcaatgagg ctcataaaac tcattctagt ggttattata ctgcttttgt ttatttattc
     1381 aaggcatatt aa
//
LOCUS       DARGED010000191         1385 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.193, whole genome shotgun sequence.
ACCESSION   DARGED010000191 DARGED010000000
VERSION     DARGED010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.193"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1385
                     /locus_tag="SFZ84_001721"
     CDS             <1..>1385
                     /locus_tag="SFZ84_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8203801.1"
                     /translation="ATQISIEDFRSRNISLLNTLEKDILKLPYEALNSQDNIVNNVGA
                     ILKYYRNSGNLLAVYIGLDNGENIMSSDLSEKKNTNITINGKANNYNATTREWYKEAR
                     NSNQIYITPAYIDAISNEYCITYSKALYKDGKFIGVLGIDILLTSLQDQIARTPGNTF
                     VFDNKDKIFAATNKELLNPSIDHSPVLNAYKAHGDNNFFSYKLNNEERLGACTKVFAY
                     TACITESADIINKPIFKAAYIQVIALIVMISISIILLYFIVSKYLSPLAAIQTGLTSF
                     FDFINYKTKNVSTIEVKSNDEFGQISKAINENILATKQGLEQDAKAVKESVETVGVVE
                     SGNLTARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKL
                     ENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLE
                     ETAAALEEITSS"
BASE COUNT          530 a          211 c          204 g          440 t
ORIGIN      
        1 gcaacacaaa tttctataga ggattttaga tccagaaata tatctttgct taatactctt
       61 gaaaaagata tattaaaatt accctatgaa gcactaaatt ctcaagataa catagttaat
      121 aatgtagggg ccatattaaa atactaccgc aatagtggaa atttgcttgc tgtttatatt
      181 ggtttagata atggtgaaaa tatcatgagt agtgatctaa gcgagaaaaa aaatactaat
      241 ataactataa atggaaaagc caacaactat aatgcaacta ctagggaatg gtataaagaa
      301 gctagaaata gtaatcaaat ctatataacc ccagcttata ttgatgctat tagtaatgaa
      361 tactgcatta cttactctaa agctctttat aaggatggta aatttattgg tgttttagga
      421 attgatattt tattaactag tttacaagat caaatcgcta gaactccagg caataccttt
      481 gtttttgata ataaagataa aatttttgca gcaaccaata aagaattatt aaatccatcc
      541 attgatcatt ctcctgttct aaatgcatat aaagctcatg gtgataacaa cttcttctct
      601 tataagttaa ataatgaaga aagacttgga gcttgtacta aagtctttgc ttatacagct
      661 tgtattaccg aaagcgctga tattataaat aaacctatat ttaaagcagc atatatacaa
      721 gttatagcct taattgttat gatatctatt agcatcatcc tcctttattt catcgtatca
      781 aaatacctct ccccacttgc agctatccaa acaggtttaa cttcattctt tgattttatc
      841 aactataaaa caaaaaatgt ttctactata gaagtaaaaa gcaatgatga atttggtcaa
      901 atctctaaag ctatcaacga aaacatcctt gctactaaac aaggtttaga acaagatgct
      961 aaagcagtaa aagaaagtgt tgaaactgta ggagtagtag aaagtggtaa tttaacagca
     1021 agaattactg ctaatcctag aaatccacaa cttattgaac ttaaaaatgt tctaaataaa
     1081 cttcttgatg ttttacaagc tagagtaggc tctgatatga atgctattca taaaattttt
     1141 gaagaataca aaagcttaga ctttagaaat aaattagaaa atgctagcgg tagtgtagaa
     1201 ttaactacta atgctttagg tgatgaaata gttaaaatgc taaaacaaag ttcagacttt
     1261 gctaatgcct tagctaatga aagtggaaaa ttacaaactg ctgttcaaag cttaaccact
     1321 tcttcaaatt ctcaagctca atctttagaa gaaactgcag cagctttaga agagatcact
     1381 tcttc
//
LOCUS       DARGED010000192         1378 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.194, whole genome shotgun sequence.
ACCESSION   DARGED010000192 DARGED010000000
VERSION     DARGED010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.194"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1378
                     /locus_tag="SFZ84_001722"
     CDS             <1..>1378
                     /locus_tag="SFZ84_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8203802.1"
                     /translation="YSLSTMKSYSKKLSFLIIILIISFGTYAISSYFISKNNKEFEKS
                     QNTLRSLQLLLKDQDYQNLNIKQKADFLIELRNILNTYPELWQDNNIFQYLNLNLSYK
                     GFKEAKQLYYKLNEDVLKNTLLKEMEYTLLTDTNKENLIKTLYMYRSLFEQKYFNKEI
                     LKIWINENWNTLSKYSISKDDFLEGVDELKQFNLKSFTEDENSIHTGKRKLESISRTQ
                     RIYILLNFLNSDKPKEKYLIKEDLGFAANSVFSNNSQITSIDKIYTKVGMMDFLNDLN
                     QQVDTAINIESWMLDNNFKENKNTLTMGILKLYLSEYQNAWQNLLASLQPVRYNTKEA
                     MVNELNILSKKENPLYSLLKIVSSNTNLNDAVLLTQAYNLGLNAGEIRSNFIGVSNAF
                     TQYHKLVNKNTLLSVGNIEVGKGTDDEKILDILNTNITNMSNKIIDFSSNNNQSAEEK
                     ISYALGGNK"
BASE COUNT          579 a          161 c          179 g          459 t
ORIGIN      
        1 tattctttaa gcactatgaa atcttattct aaaaaattat cttttttaat tataatttta
       61 atcataagct ttggaacata tgctatatct tcttatttta taagtaaaaa taataaagaa
      121 ttcgaaaaaa gccaaaacac cttaagatct ttacaattgc ttcttaaaga tcaagattat
      181 caaaatttaa atattaaaca aaaagctgac ttcttaattg aattgagaaa tattttaaat
      241 acttatcctg aactttggca agataataat atatttcaat atttaaatct aaatctctca
      301 tacaaaggat ttaaagaagc taaacaactt tattataaac tgaatgaaga tgtgttaaaa
      361 aatactttat taaaagaaat ggaatatact ttacttaccg atacaaataa agaaaattta
      421 atcaaaacat tatatatgta tagatctttg tttgaacaaa aatattttaa taaagaaata
      481 ctaaaaattt ggattaacga gaattggaat actttaagta agtattcaat ctctaaagat
      541 gactttctgg aaggggtgga tgagcttaaa caatttaatc ttaaatcttt tacagaagat
      601 gaaaacagta tacatacagg aaaaagaaaa cttgagagta taagtagaac tcaaagaatt
      661 tacattcttc ttaatttttt aaatagcgat aaacctaaag aaaaatatct tataaaagag
      721 gatttaggtt ttgctgcaaa tagtgtattt tcaaataatt ctcaaataac ttctatagat
      781 aaaatatata caaaagttgg tatgatggac tttttaaatg atttaaatca acaagttgac
      841 accgcaatca atattgaatc ttggatgcta gataacaatt ttaaagaaaa taaaaacact
      901 ttgactatgg gtattttaaa attatactta agtgaatacc aaaatgcttg gcaaaatcta
      961 ctcgcttcat tgcaacctgt taggtataat accaaagagg caatggttaa tgagcttaat
     1021 atcttatcaa aaaaagaaaa ccctttatat tctttgttaa aaattgttag ttctaataca
     1081 aatttaaatg atgcagtttt actaactcaa gcctacaatt tagggttaaa tgctggggaa
     1141 attagatcaa attttattgg ggtaagcaat gctttcacac aatatcataa gctagtaaac
     1201 aaaaatacac ttttgagtgt tggtaatata gaagtgggca aaggcactga tgatgaaaaa
     1261 atattagata ttcttaatac aaatattaca aatatgtcca ataaaattat agattttagt
     1321 tctaataata accaaagtgc tgaagaaaaa atttcatatg ctcttggagg caataaag
//
LOCUS       DARGED010000193         1374 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.195, whole genome shotgun sequence.
ACCESSION   DARGED010000193 DARGED010000000
VERSION     DARGED010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.195"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(199..699)
                     /locus_tag="SFZ84_001723"
     CDS             complement(199..699)
                     /locus_tag="SFZ84_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203803.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELSTAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(755..1354)
                     /locus_tag="SFZ84_001724"
     CDS             complement(755..1354)
                     /locus_tag="SFZ84_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEG8203804.1"
                     /translation="MLKQLFYILTFIFILCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIIYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISVSVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
BASE COUNT          455 a          191 c          186 g          542 t
ORIGIN      
        1 ggtttagata atttaataaa aattgttaaa ttatctaaat atttatttta gtttaaagag
       61 atcttttaag atctcgtttg ggttaggcta tttccctccc cctttttatt cgtagcctaa
      121 ctctctttta gagtttggaa aatctcttta agctaaaata tattatattt gcttaaagag
      181 aacaaacgat tactattctt atttaaataa atttttaaaa tccattgtag agttataaat
      241 tccagcatta tccatagttt cgcccatggt aattgcggtt gataattctg atagaatgat
      301 ttttatttca tctcttttat cttgtatata ggccaataca ccttcgtaat tacttgtttg
      361 aagaattaaa agcggattag caatttcaaa ttcaaaaagt tttttaccaa cataaacatt
      421 gaaaatattt ccaaaaagag ctgttcccat gaaagagcag ttttgtataa gttgtgacgc
      481 tgtggcatca agagttcttt tttgcatatc atctgaattt tcatctattc tttctagaat
      541 gcttttttct atttttttta aagacatatc aagcacttga agtgctccta taaaatcatt
      601 tgcatcattg atttgagagc aaatttgatt tgctttaaat tcattcacgc cctgaatttc
      661 acctaagtgt tttttaaata tatctaaatc acttttcatt gtttaccttt caaaaatatt
      721 gctaaatatt taaaaagcaa aaagtgttcc taaattagga taagttagaa tttacccaaa
      781 aaacaatctc attgccaatt ttattcaagg ctttttgaaa agcattatag gtagagcgga
      841 tatctttttt ttctattttt tctttagtat tgaaaatttt atgagctatt atttgattgt
      901 tttcaagatt tatgaaattt acacttacag aaatttgagc gtagttttca ttgttattaa
      961 gaatttgctc aaaagagtta atcctgcttt caagagcata atccgcactt aaagagcttg
     1021 ttgaagaaag caaggttgta aaaatattgc tttgttcaaa ttttgacaaa attaaaaaag
     1081 aataaagatt gcttggtaaa tctccccaga aataatgtgc gtatttgttg ctaaaaccat
     1141 tatctatata aataatagcc cgcgagttta aatacaaagg tgcatttgca ttgcgaattt
     1201 taagaatttt accagttttt ttaaaaaaaa tatttgagtc tattccttca tcttttaata
     1261 tgatattttc atttttgttg atggtttcgt gtcttaaaga gcatccgcat aatataaaaa
     1321 taaaagtcaa aatatagaat aattgcttta gcattatttt tctcctggtc ctag
//
LOCUS       DARGED010000194         1368 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.196, whole genome shotgun sequence.
ACCESSION   DARGED010000194 DARGED010000000
VERSION     DARGED010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.196"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..723)
                     /locus_tag="SFZ84_001725"
     CDS             complement(<1..723)
                     /locus_tag="SFZ84_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8203805.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFNFSLIIFIFIGLFSCILAAFFAIFIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGVFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLTNVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLK"
     gene            complement(920..1005)
                     /locus_tag="SFZ84_001726"
     tRNA            complement(920..1005)
                     /locus_tag="SFZ84_001726"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(969..971),aa:Leu,seq:gag)
     gene            complement(1041..1322)
                     /locus_tag="SFZ84_001727"
     CDS             complement(1041..1322)
                     /locus_tag="SFZ84_001727"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002850080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG8203806.1"
                     /translation="MNAPVEQEAINVWIKAFSVLAAGLGLGVAALGGAIGMGNTAAAT
                     IAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIALYANPFIVLQ"
BASE COUNT          562 a          219 c          209 g          378 t
ORIGIN      
        1 ttttaaacaa aatacaaaaa ataaaggagc taaaatcatt ttagcaaaga tgacaactat
       61 tgtaggtttg taagaggttt taatcgccat aaagccaagt cctaaaccta tagcaaaaag
      121 tgcaacaggg gttgcagagg caccaaataa acgaatagga gagaaaataa attcaggtaa
      181 agtaatcaat ttacacaaaa aaccaaaaag caaagctaaa aaaggtggaa aactaagaat
      241 ttttttaaca ttagtaagca aactgacttt ttctccattt cccaaagaaa gtataaaagg
      301 tccaaaaagt gatataggta aagttgtagc taaagcatcg taaaatataa cttcagcgct
      361 aaattgtggg tcattaaata caccagcaac aataggcata cccacaaata tagtatttcc
      421 aaaacaagaa agcaaaaaca tactgactaa agttacttta gaaaaatgaa aaacttttcc
      481 aataaaaata gcaaaaaagg ctgctaatat acagctaaac aatccaataa aaataaaaat
      541 aatcaatgaa aaattaaaat ttaaatgata tgctttatcg aaaatcaaac aaggtaaagc
      601 aaaaataata gcaaaatcta aaaaagtcct agcttgtttt tgcttcaaaa cgccaattct
      661 tttggcaaaa tatccgcctg caagtaaaat aaaaattgta aataatggta taaaaacaaa
      721 cattgagtaa tcctttttaa gggatggttt ttgaaaacgg atagaattat attctttata
      781 cttaaaaaaa atcttaatat tttttaagtt ttttaaaaaa accaatattt tttatttttt
      841 gtaactttaa gaaattgtaa gttgaaattt gattttgaat agttagtatt ttaagttgaa
      901 tgattataat tttaaataat ggtgcggtta gcgagatttg aactcgcaca cgcggagcgc
      961 accaccccct caagatggcg tgtctaccaa ttccaccata accgcataga aaaaagccca
     1021 aaaaagggct ttaataagtt ttattgtaaa actataaaag gatttgcgta aagtgctatt
     1081 agcgcgataa caagagcata gataacttgt gcttcaatca tcgctaaagc gataaacata
     1141 gttgtcatta attttggccc aagaccaggg tttctagctg ttcctgcaat tgttgccgct
     1201 gcagtattac ccataccgat agcaccacca agtgctgcaa caccaagacc taagcctgct
     1261 gcaagaactg aaaatgcttt aatccataca ttaatagctt cttgctctac tggagcatta
     1321 atttcagatg caaaagctac tgctgcacat gctaataata aaaaaaga
//
LOCUS       DARGED010000195         1351 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.197, whole genome shotgun sequence.
ACCESSION   DARGED010000195 DARGED010000000
VERSION     DARGED010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.197"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..280)
                     /locus_tag="SFZ84_001728"
     CDS             complement(<1..280)
                     /locus_tag="SFZ84_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEG8203807.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFN"
     gene            346..>1351
                     /gene="waaC"
                     /locus_tag="SFZ84_001729"
     CDS             346..>1351
                     /gene="waaC"
                     /locus_tag="SFZ84_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG8203808.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNAKNLAFKQDVFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDTGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     A"
BASE COUNT          524 a          221 c          171 g          435 t
ORIGIN      
        1 aattgaaaaa attctcaatc atttcttttt cattttgccc atcaatttta tttactttga
       61 taaattttcc aaaattatcg cttaaaaccg cacaaatact aatgatttta tgataaggca
      121 aaggcaaaaa ctcactccca ctttgttctt tttgccactg aagtgctttt aaacttacct
      181 ctaaatcact tccttcaaaa cccaaagttt tgcggataag ctcaacatct ggcacactct
      241 cacaatcaaa aacacaaata taaccttcat tttttgccat ttttaacctt tttttaaata
      301 atttcgctaa aatcatagca aaaattttaa aatattaggc ttttaatgaa aatagcaatt
      361 gttcgtttgt cagcacttgg tgatattatc caaagtgccg tggttttgca atttatcaaa
      421 aattttaaaa aagatataga aattcattgg tttgtagatg aaaaatttga aggcatactt
      481 aaaaaccatc ctttaataga caaactctat gccctaccct taaaagacaa aaaaatttta
      541 aaaagcctaa aaattcttct taaagcaaga aaaaacaact ataatgcagt aatagatcta
      601 caagggctta taaaatctgc tattgtaagt cgaattttaa gtagaaataa ttttggtttt
      661 gataaaaata gccttaaaga aagttttgct cataattttt acaaccaaaa acttgagtta
      721 gattacaatg aaaatgtatt tgtaagatac ttaagtctta cctcctttat gttaaatact
      781 gattttaatg ccaaaaattt agcctttaaa caagatgttt ttagcgtaga tgaaaattta
      841 aaacaactct taaacaataa actcaagctc gacaaaaacg aaaaaaacat actcatacat
      901 gtgggctcaa gtgtagaaaa taaaatctat cctaaaacca aacttgctat actttgcaaa
      961 cttttaatca atgaatttca acaaacaaaa atttggctcg cttggggaaa tgtaaaagaa
     1021 tacgaatttg ctaaagaggt tttaaatctt agtggtattg atgaaacaca tatagaatta
     1081 gcgccaaaat ttaatcttga agagctaatg gcttttacaa aaatgatgga tcttatcata
     1141 ggaaatgata gcggtccaac acatttagct tttgctttaa ataaagcatc tattacgatt
     1201 tttggtgcaa caccaagcta ccgcaatgct tttcaaactc atatcaataa aatcattgat
     1261 acaggtaaaa aaatccaaaa tgccaagcat atcgataaaa gtgatttttg tatcacgcgt
     1321 atagaagaag aagatatctt caaacttgcc a
//
LOCUS       DARGED010000196         1336 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.198, whole genome shotgun sequence.
ACCESSION   DARGED010000196 DARGED010000000
VERSION     DARGED010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.198"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(25..1095)
                     /locus_tag="SFZ84_001730"
     CDS             complement(25..1095)
                     /locus_tag="SFZ84_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEG8203809.1"
                     /translation="MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSIPNPS
                     ILINALILQEAKDSSEIENIITTHDELFLSDVDENKLTRAAKEVKDYESALKKGYELL
                     KKEQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNDIQELMGN
                     LELYINDDSLDEFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPI
                     LYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAAKTIETIIKIEKMMSN
                     VGEILQNKTNFYSKDFVELLFSHPYTKIDFLIKKLDISRQSASKYLKICENLGILECI
                     KMGRSNYYINIELLRLFRKGIF"
     gene            complement(1215..>1336)
                     /locus_tag="SFZ84_001731"
     CDS             complement(1215..>1336)
                     /locus_tag="SFZ84_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8203810.1"
                     /translation="HLDFVFEKAKALKELYTKELKDYEELKQSLLNKAFKGEL"
BASE COUNT          435 a          203 c          137 g          561 t
ORIGIN      
        1 gattttatcg attttatttt gcatttaaaa aattcctttt ctaaaaagtc ttaaaagttc
       61 tatatttata taataattac ttctacccat tttaatacac tctaatattc ctaaattttc
      121 acaaatttta agatattttg aagcactttg tcttgaaatg tctaattttt ttattaaaaa
      181 atctatcttt gtataaggat gagaaaacaa aagctccaca aaatctttac tataaaaatt
      241 cgttttattt tgtaaaattt cacctacatt agacatcatt ttttctatct taatgatagt
      301 ttcaatagtt tttgcagcgg tttgctctat gcctttaagt atgtattcta tccactttaa
      361 aatatcccct tcatcacgca ctttttgcaa aagcttataa tactcatctt tattttttac
      421 tatataagca ctaagatata aaataggaaa atccaaaagt cctttatata ctaaataaag
      481 tatatttata atcctacccg ttctgccatt gccatcataa aaaggatgaa tgctttcaaa
      541 ttgataatgt ataattgcca tctttaccaa aaaatcaaat tcatctaaac tatcatcgtt
      601 aatgtatagt tctaaatttc ccataagttc ttgtatatca ttaggatttt ggggtggtat
      661 gtgttttatt tctcctgtaa tagggttttt aagcattgtg ccactttgtt ttctaaagcc
      721 tgcattgttt ctttctaatc ttttttgaat ttctaaaata tgtgcatttc ttaataactg
      781 ttcttttttt aataactcat atcctttttt caaagcactt tcataatctt tcacttcttt
      841 tgctgctctt gtgagtttgt tttcatcaac atcagataaa aaaagttcat catgtgttgt
      901 gatgatattt tctatctcac tcgaatcttt tgcttcttgt aaaatcaaag cattgattaa
      961 aatacttgga tttggtatgc ttttactaag tccatttaac tctgctaatt ttctagaagc
     1021 tttaatgata agactataaa tatttgcatt taattctata tttaaaggca atttttgagg
     1081 tataaattct ttcataattt tccaatatgt taattttttc taaaaatttt aacattataa
     1141 aaaaatatgt taaaaaaatc aaaaattttt aacatatcaa gccaatgtgt taaaatttgg
     1201 caaatttttt aacattataa ttctccctta aaagctttat taagcaagga ttgcttaagc
     1261 tcttcataat cttttagctc tttagtgtaa agttctttta aagcctttgc cttttcaaag
     1321 acaaaatcta aatgct
//
LOCUS       DARGED010000197         1311 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.199, whole genome shotgun sequence.
ACCESSION   DARGED010000197 DARGED010000000
VERSION     DARGED010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.199"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..201)
                     /gene="mraW"
                     /locus_tag="SFZ84_001732"
     CDS             complement(<1..201)
                     /gene="mraW"
                     /locus_tag="SFZ84_001732"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytosine(1402)-N(4))-methyltransferase"
                     /protein_id="HEG8203811.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRL"
     gene            360..>1311
                     /locus_tag="SFZ84_001733"
     CDS             360..>1311
                     /locus_tag="SFZ84_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEG8203812.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGANENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEI
                     AKDYALMQLKNAANAKFLDLKNGKDNFQKDQNISESDVYYP"
BASE COUNT          529 a          155 c          195 g          432 t
ORIGIN      
        1 aaggcgtttt ttagaaaatt ctaaagcttg ttgatcttga tcacaagcaa tgaatttaag
       61 atcaggatga tttttaagca aagcttcact atgtccgcca aatcctaaag tgcagtctaa
      121 aaaataacct gttttaagat ttttaaaaat ctcttgaact tcattaagca aaactgggat
      181 atgaggaatt tccaaaatca atcctaataa atttttataa actataatta taactaaatt
      241 tcattgtaaa aatcataaaa tttaaagaac aaatattttt tggtaaaaat tttataatta
      301 aactccactt aaacacttct acgatacaat atctagttta aatttaatca aggaatgata
      361 tgcttacttg gatgcaacat cacaaaaaat atcttgttgt tactatatgg gttagtacta
      421 tagcttttgt tggcgctggc tttttaggtt ggggtgctta tgattttaat ctcaatagaa
      481 gttcgagtgt tgcaactgta ggaaatgaaa agataggttt tagtgaattt gatactagat
      541 atagacaaat tttaagttat tataatcaaa ttagcaatgg tgctttaact ccagaaaatg
      601 ctgagcaact aggcattaaa aatatagctt taagctctct tgttgaagat aagcttttgt
      661 taaattttgc caaagatttg ggtattggcg caaacgagaa tgaaatttta caaaaacttg
      721 caaatactag agaatttcaa gatcctacag gagattttaa caaaacaatt tattatgaac
      781 ttttaaatgc caataattta actccaaaag attacgaaac acaacttgca aatgaagtaa
      841 ttaccgataa acttaatcaa atttttaata ttcctagcaa agatgaggaa ttaaaaatgt
      901 tagcttctag ttattttatg caagatgctt taagtattgc aaaaattgat tatgacaaaa
      961 aaaatattaa gattaacgaa gaggatttaa aaaagctttg gaatgaacat aaagaagatt
     1021 ataaaactaa aaaaatatat gaaatttcaa cttatttttt gccagttagc aatgagaaaa
     1081 ttgacgacaa agaattagaa aaattttata atcaagatga aaataaacta aaatataaag
     1141 attttgcagg taaagtgatg gattttcagt ctgctaaaaa tgaaattgct aaagattacg
     1201 ccttaatgca actaaagaat gcggctaatg ctaaattttt agatttaaaa aatgggaaag
     1261 ataattttca aaaagatcaa aatattagtg aatctgatgt ttattatcca a
//
LOCUS       DARGED010000198         1296 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.200, whole genome shotgun sequence.
ACCESSION   DARGED010000198 DARGED010000000
VERSION     DARGED010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.200"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>1296)
                     /locus_tag="SFZ84_001734"
     CDS             complement(<1..>1296)
                     /locus_tag="SFZ84_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8203813.1"
                     /translation="FKKLYKIKKQHKKEQKIYQQIIQVFPQLKYPSLETCSDYNEALR
                     CKFHLSYMIGEVLIKAYQNWYKGGGFKLKNNIKKANKEFQIFREILKEFKELNGEALK
                     AIQDNKQLFLKEFPRIKNILKTHQDYQPILDNIFHNFNYFIKNFDLIEEWLLSDDFKE
                     KYKKENHPYPSLLDPKKLNDENEKINYHNIPAELAWKMNLPLPPNYEFVGFFLHTSGE
                     KAMERFLKEVGVVLIGAFGYEDGKRYISIFNFLISEACACNDLKFAIGILDVNCQKYD
                     KFCFLLQNKPVLILLRDPIDSLKSFINVRHQKNGFNEILKIDINNTDFDKINDRIVYV
                     HESNGCFNPDTNQKFPSLESIKALSDTNHWMLMYNIRRNKTIEFFRFNKIIYIDMMDI
                     VGDKTLFTLEKLSKILNFSSPDKNNKIFYQQLYSPLTVL"
BASE COUNT          456 a          172 c          142 g          526 t
ORIGIN      
        1 aataatactg ttaatggtga atataattgc tgataaaata ttttattatt tttatctggg
       61 gaagaaaaat tcagtatttt tgataatttc tctaatgtaa ataaagtctt gtctccaact
      121 atatccatca tatcaatata aataatttta ttaaatctaa aaaattctat agtcttattt
      181 cttctaatat tatacattaa catccaatga ttagtatctg aaagagcttt gatactttca
      241 agagatggaa atttttgatt tgtatctgga ttaaaacaac catttgattc gtgaacataa
      301 actattctat cattaatttt atcaaaatca gtattgttaa tatctatttt aagaatttca
      361 ttaaatccat ttttctgatg tctaacatta ataaaagatt tcaaagaatc aataggatct
      421 ctaagcaaaa tcaatacagg tttattttgc aacaaaaaac aaaatttatc atacttttga
      481 caattcacat cgagtatacc tatggcaaat tttaaatcat tgcatgcaca agcttcacta
      541 atcaaaaaat taaaaatact aatataacgc ttaccatcct catatccaaa tgcaccaata
      601 agcacaacac caacttcttt taaaaatctc tccatagctt tttctccact tgtatgcaaa
      661 aaaaatccaa caaactcata attgggcggt aaaggcaaat tcatcttcca agcaagttca
      721 gcaggtatgt tatgataatt gattttttca ttttcatcat taagtttttt aggatcaagt
      781 aatgaaggat aaggatggtt ttctttttta tatttttctt tgaaatcatc tgataataac
      841 cattcttcta taagatcgaa attttttata aaataattaa agttgtgaaa gatattatct
      901 agtataggtt gataatcttg atgtgttttt aagatatttt ttattcttgg aaattctttt
      961 aggaataatt gtttattatc ttgaatagct tttaaagctt caccatttaa ttctttaaat
     1021 tcttttagaa tttctctaaa aatttgaaat tctttatttg cttttttaat attatttttt
     1081 aatttaaatc cacctccttt ataccaattc tgataagcct taattaaaac ttcacctatc
     1141 atgtaagata aatggaattt acatcttaaa gcttcattat aatcagaaca tgtttctaaa
     1201 cttgggtatt taagttgggg aaagacttgt atgatttgtt gataaatttt ttgttctttt
     1261 ttatgttgtt ttttgatttt atagagtttt ttaaat
//
LOCUS       DARGED010000199         1292 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.201, whole genome shotgun sequence.
ACCESSION   DARGED010000199 DARGED010000000
VERSION     DARGED010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.201"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1122
                     /locus_tag="SFZ84_001735"
     CDS             <1..1122
                     /locus_tag="SFZ84_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203814.1"
                     /translation="YLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSEEKTKALNALLRE
                     HGLEISACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            1113..>1292
                     /locus_tag="SFZ84_001736"
     CDS             1113..>1292
                     /locus_tag="SFZ84_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEG8203815.1"
                     /translation="MFIGITQRLICNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSHYKHLIKAVI"
BASE COUNT          486 a          145 c          211 g          450 t
ORIGIN      
        1 tatttaaaag acatacaaaa agcttataag ctaaaagaaa gatatgatgg cattattaat
       61 tctaattttt ctttaattga taaaatttat tggcttattg aagaatgcaa gcgttatgga
      121 accttgcctt ttgctggggt ggctagggct gcatttgtag caatgcaact tttaaattct
      181 ttagttgaga ttgattttat aaccaaagag gaaaaagatg attttttaaa ttcactcaat
      241 acagtgagca aaaatttaag caaacaaaca aaccatctta attttcacaa caaagatcaa
      301 tttttaaaag attttggaca tttaagagca ggaacttata atattttatc tccaagatat
      361 gatgaagatt ttgaacttta ttttgatgtg gatcaaaaag atagtaaagt ttatttacaa
      421 gataaagctt ttgttttttc agaagaaaag acaaaagctt taaatgcttt acttagagaa
      481 catggactag aaattagtgc ttgtgaattt tttgattttt taaaacaagc tattgaaggt
      541 agagaattgg taaaatttga atttactaga ttgctttcta aggctatagt ttatatagaa
      601 gaattaggca aatattatgg tattgaaaaa gaagatttgg ctcatcttga tataaaaagc
      661 attttaaatc tttattctag tctttattct ataaatccaa aagagcagtt tgtagaagaa
      721 attaatcgca ataaaaaaga atatgaactt acacaagcta taaaacttcc ttctttgctt
      781 tgcaatgccg atgaaatttt ttctttttat aatcatagta ttattccaaa tttcattaca
      841 caaaagagca tcactgcatt tacggcgaaa gaaaatgata aagatttaga aggaaagatt
      901 gttttaattt atgcagcaga tcctggatat gattatttat ttacaaaaaa tatagcagga
      961 cttattacat gttatggggg tgctaattca catatggcca ttcgtgcctc agaacttgga
     1021 atgcctgctg ttataggagt tggagaagaa aattttgaaa aatatttaaa agctaaaaaa
     1081 ataaatatag aatgtgaaag tgagcaaata ttttgtttat aggtattact caaaggctta
     1141 tttgcaacga aagttatcat gaagaaagag aatgtttggc tttggattgg ggaaaattat
     1201 ttaataaaga tttatttaaa aattttactc ctcttcctct tagctatgaa atagattttt
     1261 ctcattataa acatctaata aaagctgtga ta
//
LOCUS       DARGED010000200         1263 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.202, whole genome shotgun sequence.
ACCESSION   DARGED010000200 DARGED010000000
VERSION     DARGED010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.202"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..514
                     /locus_tag="SFZ84_001737"
     CDS             <1..514
                     /locus_tag="SFZ84_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG8203816.1"
                     /translation="KGILPHSWFFAKKLDLGYKQDLNLSEQKLYQVKEYFLTLKEDEK
                     KVILDFLSQNNDDKYDLYKMLYYLINELYSFEHDGIFYQIIIDKEKMLMAQKHDKSFY
                     PLRSFVYKPYLHELKGIRPFSFLMKILGLEYLGAMISHTKFYRLARKLFFNPKGFFED
                     FNYKIMKGKI"
     gene            511..>1263
                     /locus_tag="SFZ84_001738"
     CDS             511..>1263
                     /locus_tag="SFZ84_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HEG8203817.1"
                     /translation="MKIVIVGIGYVGLANAILFSKNNENEVVLLDIDENKIQSINNHK
                     SPIKDKLIEKFFVQNISKLHATSNIKEAYFNADFAVIATPTDYDEQLNFFDTRSIENV
                     LKDIKNINSKINVIIKSTVPIGYTKTIKQKFNMSNIVFSPEFLREGSALYDSLYPSRI
                     IIGDKSVLGKTIGDLFLKNIEKKNVDIFYMDSDEAESVKLFSNTYLAMRVGFFNEVDS
                     YARKHNLNSADIIKGISADDRIGKYYNNPSFGY"
BASE COUNT          473 a          119 c          209 g          462 t
ORIGIN      
        1 aaaaggaatt ttacctcatt cttggttttt tgcaaaaaaa ttagatttag gttataaaca
       61 agatttaaat ttaagcgagc aaaaacttta tcaagtgaaa gaatatttct taactttaaa
      121 ggaggatgaa aaaaaagtta tcttggattt tttaagccaa aacaatgatg ataagtatga
      181 tttgtataaa atgctttatt atttgattaa cgagctttat agttttgagc atgatgggat
      241 tttttatcaa atcatcattg ataaagaaaa aatgctgatg gcacaaaaac atgataaaag
      301 cttttatcct ttaagatctt ttgtttataa accttatttg catgagctta agggtataag
      361 acctttttca tttttgatga aaattttagg tttagagtat cttggtgcta tgatttcaca
      421 tactaaattt tatcgcttgg caagaaaatt gttttttaat cctaagggat tttttgagga
      481 ttttaattat aaaataatga aaggtaaaat atgaaaatag tcattgttgg aattggttat
      541 gttgggcttg caaatgctat actcttttca aaaaataatg aaaatgaggt tgtattgtta
      601 gatattgatg aaaataaaat ccaaagtatt aataatcata agtctcctat taaagataaa
      661 ttaattgaaa agttctttgt gcaaaatata agtaaattac atgctacttc aaatatcaaa
      721 gaggcttatt ttaatgcaga ttttgcagtt attgctactc caactgatta tgatgaacag
      781 cttaattttt ttgatacaag aagtatagag aatgttttaa aagatataaa aaatataaat
      841 tctaagatca atgttattat taaaagcact gtgcctatag gatatacaaa aaccataaaa
      901 caaaaattta atatgtctaa tattgttttt tctccagaat ttttacggga gggaagtgct
      961 ttatatgata gtctatatcc cagtagaatt attattggtg ataaaagtgt tttgggtaaa
     1021 actattggag atttgttttt aaaaaatata gagaaaaaaa atgttgatat tttttatatg
     1081 gattcggatg aggcagaaag cgttaagctt ttttctaata cttacttagc aatgagagtg
     1141 ggatttttta atgaagttga ttcgtatgca agaaaacata atttaaattc agcggatata
     1201 attaagggta ttagtgctga tgatagaatt ggaaaatatt acaataaccc cagttttgga
     1261 tat
//
LOCUS       DARGED010000201         1251 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.203, whole genome shotgun sequence.
ACCESSION   DARGED010000201 DARGED010000000
VERSION     DARGED010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.203"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            219..1112
                     /gene="msrP"
                     /locus_tag="SFZ84_001739"
     CDS             219..1112
                     /gene="msrP"
                     /locus_tag="SFZ84_001739"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG8203818.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            1112..>1251
                     /locus_tag="SFZ84_001740"
     CDS             1112..>1251
                     /locus_tag="SFZ84_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8203819.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFTL
                     IF"
BASE COUNT          465 a          187 c          194 g          405 t
ORIGIN      
        1 ttcaaaagat aaagagctca aggatgaact tagaaaatta aaaaaattag aatttaaaat
       61 tctaatgcaa gaaacttcaa aaatgaaact acttaatcac tataaagaat tttgcgaaga
      121 aatattctac aatatagaac ttgaaaaaat cacacaaaat taatcctgta ttaacattgt
      181 tatagtttaa taataaaaat ttttaataag gaaaaattat gcttataaca cctgaaaaac
      241 tttataaaca aaggagaaat tttttaaaac ttggagcggg tgctttaata agttcaagcg
      301 tgcttgcttc taaactatct gctttaaatt tcacaagcga tactaatcca aacaaacttg
      361 aaatcagcga tgaagaactg gctacaaatt atgtcaattt ttatgaattt tcaacagata
      421 aaagaaaggc tgtatcattg gcacaaaatt tcaatactca aaattggaaa atcgatatca
      481 gtggagaaat agaaaaacct ttaactttaa gcatggaaga tattttaaaa tttccactag
      541 aagaaagaat ttatcgtttt cgctgtgttg aaacttggtc tatggtggta ccttgggtag
      601 gctttgaatt gcgtcgtttg attgaaatgg caaaacctac aagcgaggca aaatttgtta
      661 aatttaccac tcttttagat aagagccaat ttcccgatca agacgcttta tttccaacta
      721 tagactatcc ttatgtagaa ggacttcgca tggatgaagc tatgcatcct cttaccttgc
      781 ttgcagtagg aatgtataaa aaagccttaa agcctcaaaa tggcgctcca atacgccttg
      841 ttgttccttg gaaatatggc tttaaaagta ttaaatccat agttaaaata gaatttacca
      901 aagaacagcc taaatccact tgggaaagtt acgctccaag tgaatatggt ttttatgcta
      961 atgtcaatcc taatgtttct catcctagat ggtctcaagc taacgagagg gctttaggag
     1021 acttctttac caaacctact ttaatgttta atggatatga aaaagaagtg gcaagtttat
     1081 ataaaaacat ggacttgaaa gtgaattttt aatgcagaca aaatacttta aatttcttgc
     1141 ttattttagc tttatcataa gtttaattta tggcttttat catatcataa aagcctttga
     1201 ttttgtaaaa gaagcctata tttacactgg aatatttact ttaatctttt t
//
LOCUS       DARGED010000202         1195 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.204, whole genome shotgun sequence.
ACCESSION   DARGED010000202 DARGED010000000
VERSION     DARGED010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.204"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..399)
                     /locus_tag="SFZ84_001741"
     CDS             complement(<1..399)
                     /locus_tag="SFZ84_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203820.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILL"
     gene            complement(396..1058)
                     /locus_tag="SFZ84_001742"
     CDS             complement(396..1058)
                     /locus_tag="SFZ84_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203821.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(1055..>1195)
                     /locus_tag="SFZ84_001743"
     CDS             complement(1055..>1195)
                     /locus_tag="SFZ84_001743"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203822.1"
                     /translation="PIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYF
                     KE"
BASE COUNT          422 a          112 c          175 g          486 t
ORIGIN      
        1 gagtaaaatt tcatcattga catttttatc acgatttaaa gcaatgctaa tgtgggctat
       61 aataacacca tctttgctta aatttgcatc gggattgaag ttggaaaatt taaaattaac
      121 acattgtgca ataggataaa aatattttat tttaatcaaa gcttttgtgt aattaaaata
      181 tatattgtct aaacattctt tattttcttg ctttgcttga tataaaaaat atttagaaaa
      241 ttgcgttgca ttgtgactta aaatttgagc ttgaaggtag taataactat cttggattat
      301 ttttggagta tagctggata tgtttaaggt caagctcatc catagactta ttagtagtat
      361 taaaaaaatt gtccaaatta aaacataagc ttttttcaca gtaaaattct tttttcaagg
      421 caatgttttg tttgtctttt taggcaaatt tttaatttat tgttttgcag gttaaatgag
      481 cttatgtttt tagaaattaa tccttgttgg tttaattgtt cattaaattt tggctttatt
      541 tcatatataa gttcttcatt ttgcaatttg ataactaatt gagcttgcaa aggaataaaa
      601 ctacctgtaa aatttgcaga tataccattt tccaagatag atattttttc aatcttatta
      661 attttataag catagctaat atgttcattg tcgttatata aatcttttct attttggagt
      721 tgtgttttaa aatcagaatg aggtgaataa agtgtatgat tattttctaa aataagagca
      781 gaattaataa gataaagttt attatctttt aggctaatta actcatcttt taaaagacat
      841 tttaatgtat tttgtgaaaa tgtaatatta atacaatttt gtattaattt ttctatttta
      901 agcaagttta aatgtgcttg agtgataaga ttgtttgtat gtaaagcagt aaaatttaaa
      961 tgataaaaat ccattaaagg ttttgaaagt aagctagtta taaaagtaaa aagtattagt
     1021 gatattataa gttcaaaaag tgtaaaagct ttgctcattc tttaaaataa acgctataat
     1081 tttgatcttg aaagtataat ttttgaaatt gaaatatacc atcattaaca aactgttctt
     1141 gtaaaactat aggttttaag gctgaagttt gaagtatgat ggttttaaaa atagg
//
LOCUS       DARGED010000203         1194 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.205, whole genome shotgun sequence.
ACCESSION   DARGED010000203 DARGED010000000
VERSION     DARGED010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.205"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..322
                     /locus_tag="SFZ84_001744"
     CDS             <1..322
                     /locus_tag="SFZ84_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203823.1"
                     /translation="YSDFTKKKPSIEKRVKDDGYEYFYYEKLNETFAYYDIEDMIKSK
                     KRNGNIITIVYDKKYKKMPKPFASYIRYNYKNDGVFLRGDEGAGLYFTYEEVFTCSYF
                     DNFK"
     gene            331..>1194
                     /locus_tag="SFZ84_001745"
     CDS             331..>1194
                     /locus_tag="SFZ84_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEG8203824.1"
                     /translation="MSKNIKTQEAKLDLITKFLDYANCADASYALLDPVFTGVIIDKQ
                     EKELEKDLDTQRLGDKHNNQNSTYARAIQARFEQNKIVKIEPKYCISLINTCFDSKEI
                     TLDNDISRVGLNDALSKRTIDFVNRFKLLKHQPNTTSGFSATLFEDTKDNNQKIIVIR
                     GTEPTSNFSVDILDADVDLALGKVPYNQYLDMIKFYSECVKEFPNIIKDKGLVIVGHS
                     LGGALAQLLTLSLASVNSSANVKEIYTFNSPGAKELKALNLNQIYRIDGKIINSDNKE
                     QALFYQIRSYKY"
BASE COUNT          471 a          133 c          193 g          397 t
ORIGIN      
        1 gtatagcgat tttacaaaaa aaaagccttc tatagaaaaa cgagttaagg atgatggtta
       61 tgaatatttt tattatgaaa aacttaatga aacatttgct tattatgata tagaagatat
      121 gatcaaatct aagaaacgaa atggcaatat tataaccata gtatatgata aaaaatataa
      181 aaaaatgccc aagccttttg cttcatatat aagatataat tataaaaatg atggtgtatt
      241 cttaagaggt gatgagggtg ctggattata ttttacatat gaagaagtat tcacttgtag
      301 ctattttgat aattttaagt aaggatataa atgagcaaaa acattaaaac acaagaagct
      361 aaattagact taatcactaa atttttagac tatgctaatt gtgcagatgc tagttatgct
      421 ttattagatc cagtttttac aggtgttatt attgataaac aagaaaagga gttagaaaaa
      481 gatttagata cccaaagact aggtgataaa cataataatc aaaattctac ctatgcaaga
      541 gctatacaag ctcgttttga acaaaataaa atagttaaaa tagaacctaa atattgtatt
      601 tctcttataa atacttgttt tgatagtaaa gaaataacat tggataatga tattagtagg
      661 gtaggattga atgatgcact gagtaaaaga actattgatt ttgtaaatag atttaaactt
      721 ttaaaacatc agcccaacac tacaagtggc tttagtgcta ctttgtttga agatactaaa
      781 gataacaatc aaaagattat agttatacga ggaacagagc ctacaagtaa ttttagtgta
      841 gatattttgg atgctgatgt tgatttagct ttaggcaaag ttccctataa tcaatatctt
      901 gatatgatta aattttattc tgagtgtgtt aaagaatttc caaatattat aaaagacaaa
      961 ggtttggtaa ttgtaggtca ttctttaggc ggagctttgg cgcaactact tactctttca
     1021 ttagcgagtg ttaattctag tgctaatgtt aaagaaatct acactttcaa ttcgcctggt
     1081 gcaaaagaac taaaagcttt aaatttaaat caaatttaca gaatagatgg aaaaattatc
     1141 aattctgata ataaagagca agcattgttt tatcaaataa gatcttataa atat
//
LOCUS       DARGED010000204         1170 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.206, whole genome shotgun sequence.
ACCESSION   DARGED010000204 DARGED010000000
VERSION     DARGED010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.206"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..223
                     /locus_tag="SFZ84_001746"
     CDS             <1..223
                     /locus_tag="SFZ84_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8203825.1"
                     /translation="MLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWSA
                     LIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(188..>1170)
                     /locus_tag="SFZ84_001747"
     CDS             complement(188..>1170)
                     /locus_tag="SFZ84_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203826.1"
                     /translation="QENAPLLNLIEYDEYLNAFGDISKSFFIIDEILQRIINFEPKQS
                     KKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDKKVLERLHSWGIK
                     SNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKWVGESEQNVRKIF
                     DTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERFSGVII
                     ATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFEKDFDINILSNYE
                     LSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSKIVGF"
BASE COUNT          391 a          186 c          122 g          471 t
ORIGIN      
        1 aatgctttta agttctttta aaatctttaa aaaacttagt aaaatcagaa aactaggata
       61 tttatgctta gttttggcaa gttatcatta ttttttaacc ccaaaaattc ctatgttttg
      121 ggaatggagt gctttaatta tagctttgtt ttattttata gttcgctata caaaaacatt
      181 aaaaaagtta aaatccaaca atcttacttt tatcaaaact tgaatttaat tctttttgta
      241 tgctttctat aaaatcttgc attttaaaaa ccccatcttt tgatacagct actttcaaag
      301 ctgtattctt caccaccatt aaaatttgtg ctccacttaa ttcataattt gataaaatat
      361 ttatatcaaa atctttttca aataatgctt ttttaggtag aaatttttcc caaattttaa
      421 gcctatcttt aaaatcaggt tttttaaatt ctatcttata atcaaatctt cttgaaaatg
      481 cactatctaa gctttctaaa aaatttgtcg tagcgataat cacaccacta aaacgctcaa
      541 tttgctctaa gaatatattt tgcatttgat tatgcatttt atcgctacca ctacttccat
      601 ctacacgcgt acttaaaaac tgatcagctt cattgagaag taaaatagga ctttgtttac
      661 aagtttgcac gatattttta taagtatcaa aaatttttct tacattttgc tcactctctc
      721 caacccattt gctcaaaatt ttagaacagt caaaactaag aacagatttt ttcattgatt
      781 tagccatagc taaagctgac atagtttttc cagtaccagc aggaccataa aaaataattt
      841 tagcttctat atttttatta ctctttatac cccaagaatg aagtctttct aggacttttt
      901 tatcttgttg ttttaaaata ttttctaaaa gctcttttgt attttcaggc ataataatat
      961 cattgatgtc agtgcttggt tctataagct cgaaaatatc ttgatctttt aaaacacttt
     1021 caattttgat ttttttactt tgttttggtt caaaatttat aattctttgt aaaatttcat
     1081 cgataataaa aaaactttta gaaatatctc caaaagcatt taaatattca tcatactcga
     1141 ttaagtttaa aagaggagca ttttcttgta
//
LOCUS       DARGED010000205         1163 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.207, whole genome shotgun sequence.
ACCESSION   DARGED010000205 DARGED010000000
VERSION     DARGED010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.207"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..298
                     /locus_tag="SFZ84_001748"
     CDS             <1..298
                     /locus_tag="SFZ84_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203827.1"
                     /translation="DDVINVKMNNLEFIPLAYDKNGYVISYKAKLNLDFNVVFKDGSS
                     QAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIAIKGQKRDSKY"
     gene            282..>1163
                     /locus_tag="SFZ84_001749"
     CDS             282..>1163
                     /locus_tag="SFZ84_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203828.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKL"
BASE COUNT          468 a          117 c          183 g          395 t
ORIGIN      
        1 tgatgatgta atcaatgtta aaatgaataa tttagaattt attcctttag cttatgataa
       61 aaatggctat gttattagtt ataaagctaa attaaattta gattttaatg ttgtctttaa
      121 agatggttca agtcaggctt ttagtacaag tggaagttat aattttgaaa tttctccaaa
      181 tagtattatt agtgattctg caaggtatga ggctattcga gcagcttcaa gcgaggcatt
      241 tgatgagttt atttccgtaa ttgctattaa agggcaaaaa cgtgattcca aatactaatg
      301 aaatagcaaa gcaaacttta attgcattaa aagaaagaaa actaaaacca actcctgaaa
      361 attatacgga aatttttgaa gaattatctt taaaatatgg tattacaagt tcaaataagg
      421 ctaaacttga taaatacaaa accttgcttt taccgattta tcaacaagaa ttaaattcta
      481 aaactataag aagtttagaa gaactaatta gttttttaat ttctgtttta aatagacaaa
      541 gcggaaaaca atttagtgaa ttttttgatt ttttatatac catatctaaa actttgcaaa
      601 taagtaagga taaaaagata agagatttgg ctaaggtgac ttcgattaga atttctaaaa
      661 ctatggatag tgaaagtatt tacttgctta ctaaaaaatg gaaagagctt gaaagaaatt
      721 acgatgaaaa tgacttagaa gaacaagctc gcaaatatgg tattagtaaa tatgatgatt
      781 atgatagcgt gattaaaaaa ctcttagtta aacttgaaga gcgtagttat gagcacttta
      841 gtgaattatt atgcttgggt ttaaatcctt cattggtaga agatttaaaa attcaaggtt
      901 ttatacaaaa tttaacacaa aagccttttg taataggcga agaaaatttt aaaaatgaac
      961 taatggaatt tataaatcat cgtataatgg ttgataatat gtatgtccaa aaaaatttaa
     1021 atttttttaa tgataatcta aaaaaaatct atgaattgct tgtcttactt aataaatcga
     1081 atgaaaaaaa tatggatttt atcaatactt taaaaccaga tgaaaatggg gaagtaaaac
     1141 ttagttttga ggatttaaaa cta
//
LOCUS       DARGED010000206         1156 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.208, whole genome shotgun sequence.
ACCESSION   DARGED010000206 DARGED010000000
VERSION     DARGED010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.208"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..613
                     /locus_tag="SFZ84_001750"
     CDS             <1..613
                     /locus_tag="SFZ84_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG8203829.1"
                     /translation="EGVIFSYENMLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTK
                     KHKAHLLIAVLSQDQSKLEQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKM
                     LDDNRLPVYNWIYVSVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIV
                     LHILTYDINLKDKDILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            677..1093
                     /locus_tag="SFZ84_001751"
     CDS             677..1093
                     /locus_tag="SFZ84_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8203830.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          442 a          127 c          195 g          392 t
ORIGIN      
        1 agagggtgtg attttttcat atgaaaatat gttggttact ctaaatttga ttaaaaatcc
       61 tatacctaat cacgaagcag aatactatgc aaattttaat tttatgtgga aagatgcctt
      121 agagcaaact aaaaaacata aagctcatct tcttatagcg gtgctaagtc aagatcaaag
      181 caaattagaa caagctaaaa tgtttacaaa aattgcagct ttatgtttgg ataataaaca
      241 tgctttaggt ttttatacag gtgcagttgt tttagagccc agtttttata tagaaaatgc
      301 aaaaatgtta gatgataatc gcttgccggt atataattgg atatatgtta gtgtttatcc
      361 tagtgaaaat ggagttaatg cttatactta tgggcttaga aattttgata aattagaact
      421 tgaagtttgt gatttaaaca tagaagaaaa agaacttttc ttttgtattt atgatattgt
      481 tttgcatatt ttaacttatg atattaatct aaaagataaa gatattttaa aatttgaaga
      541 tggaaaagaa ataaaattta taaaaagtca aggtataagt gttgagaatg aaagcttgaa
      601 aattattttt taagtttcac attcacttca cagttttgag ttaaactttc gccaaccaag
      661 aaaaaaagga gaaattatga aagcaaaact aactttactt gctttgttgg gtactacggt
      721 gcttttagct aaagatatgg ttgttcctgc tagcgaactt ccaaataatg ccaaagaatt
      781 tatttctaaa aattttaaaa ccgctcaaat tggtttagtg aaaaaagata tagattctta
      841 tgatgtgatt ttaaatgatg gaactgaaat tgattttatg atcaatggag agtggaaaga
      901 agttgatgga aaatataagg ctttgccaca tactatctta cctaatgtta tgaaaaaagt
      961 gagtgcaact caaccaaatg ctcaaattct tgaagtagac aaagaaatta atggttataa
     1021 atttaagttt aataacaata tggaagttta tacagatatg caaggaaata tcctaggtca
     1081 aaaattagat taatttttga aaatttaact cccttagaaa atttgatgca aaaatttgga
     1141 agcatagtct tccaaa
//
LOCUS       DARGED010000207         1148 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.209, whole genome shotgun sequence.
ACCESSION   DARGED010000207 DARGED010000000
VERSION     DARGED010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.209"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1148
                     /locus_tag="SFZ84_001752"
     CDS             <1..>1148
                     /locus_tag="SFZ84_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8203831.1"
                     /translation="YRISYDDEKDLKAIVFVIGGYGANANIYFLDSYRNYIAKNFDVV
                     TINVFYHCFCQRRSDVEKYSTLADFTKDDLKLIEKVLRKYNIPCDQLANNTVVSHCEY
                     LSEIMTELKMLNRLPYDFEERLSATFIPSRGEYQNFGIMAAIDHINALKDLVKRFPKF
                     ADLPKIYGGGSYGGYLALLIAKIAPWYVDGVIDNSGSAVPPLNYIIGRELEFKSKDTN
                     GDMYMQGDHFFVSCFLKTHWTRKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIY
                     VSYHSKEDPLTPANFKELTMQILKILGYDVSLNLIDENKIDGKFIKNLDHGCGIPDKA
                     LFRKELPLMLEKLQKRKSLMQENSISYPCGNKVFTFKDVENQLKLIIN"
BASE COUNT          421 a          127 c          197 g          403 t
ORIGIN      
        1 atatcgcata agttatgatg atgaaaaaga tctcaaagct atagtttttg tcataggagg
       61 ttatggagct aatgcaaata tatatttttt agattcttat agaaattata ttgctaaaaa
      121 ttttgatgta gtgacaataa atgtttttta tcattgtttt tgccaaaggc gttcggatgt
      181 tgaaaaatat tcaacattag cagattttac aaaagatgat ttaaaattaa tagaaaaagt
      241 gcttcgtaaa tacaatattc catgtgatca attagccaat aatactgtag ttagtcattg
      301 tgaatatttg agcgagatta tgacagaatt aaaaatgtta aatcgattgc cttatgattt
      361 tgaagaaaga ctaagtgcaa cttttattcc ttcgcgtgga gaatatcaaa attttggcat
      421 tatggcagct attgatcata tcaatgcttt aaaagattta gttaaacgct ttccaaaatt
      481 tgcagattta ccaaaaattt atgggggggg gtcttatgga ggatacttag ccttgctcat
      541 agcaaaaata gctccttggt atgtggatgg cgtgattgat aattcgggtt cggctgttcc
      601 accgcttaat tatattattg gtagagagtt ggaatttaaa agcaaagata ctaatgggga
      661 tatgtatatg cagggcgatc atttttttgt gagttgtttt ttaaaaaccc actggacgcg
      721 taaagaaaat tcaccttatt tttttaataa tgaaaattat tttattagaa cattgttaaa
      781 taaggatcat ttgattttgc aaagtcaaaa aaataaaaat attatttatg tgagttatca
      841 tagtaaagaa gatcctttaa ctccagcaaa ttttaaagaa ctaaccatgc aaatattaaa
      901 aattttaggt tacgatgtaa gcttaaattt gatagatgaa aataaaattg atggaaaatt
      961 tattaaaaat ttagatcatg gttgtggtat acctgataaa gccttattta gaaaagaact
     1021 tcctttaatg cttgaaaaat tacaaaaaag aaaatcttta atgcaagaaa attccatctc
     1081 ttatccttgt ggaaataaag tgtttacttt taaagatgta gaaaatcagt taaaattgat
     1141 cattaatt
//
LOCUS       DARGED010000208         1113 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.210, whole genome shotgun sequence.
ACCESSION   DARGED010000208 DARGED010000000
VERSION     DARGED010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.210"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(108..467)
                     /locus_tag="SFZ84_001753"
     CDS             complement(108..467)
                     /locus_tag="SFZ84_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203832.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYI
                     SKNKQIIQEYRLKLCEK"
     gene            complement(496..1083)
                     /locus_tag="SFZ84_001754"
     CDS             complement(496..1083)
                     /locus_tag="SFZ84_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HEG8203833.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSYVKGATIGYGHLIGQNEWDLYKNG
                     ITLQEADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
BASE COUNT          338 a          185 c          114 g          476 t
ORIGIN      
        1 ttaattagga tttttataac tttaaaaact tcttgtaatt cttattgtat ctttttaact
       61 ttttacatat tctaggtatt tgttgttgct tgctgccttt gttgcgtcta tttttcacat
      121 aatttcagac gatattcttg tataatctgc ttgtttttag aaatatataa aaaattatta
      181 aaaatattgt attcataaat accattttta aaaacatatc ctttaaaatt catatttaca
      241 tcactaatag acttaccgtt taagacaata tattttccat tatttttatt gacacccaca
      301 tatacaacct tatcacaagt tatattaccc tctggacata gatttaaaat ttttatccaa
      361 aacttttcat tttcataggt acattgctct agtggagtaa aatcctcttg tgctaacaaa
      421 taagtactaa aaaataaaaa caataatata tttttaaaaa ttaccatttt tcataacctc
      481 cttgagtgta aagctttatt cagcatttct cctattaatt agtccctgca ttactttatt
      541 ttgacttttg ttccacgcca tccaagcttc ctttaatgtt ttgtaacccg ttttctctgc
      601 attgatgatt ttggcaacaa aagagttttt aaaattatca atccctatat taaaacataa
      661 tataaccaag tcatcaaatt cattctgtgc caaggaagag tttattgaat tttttacagc
      721 attttcaaag ggtaacaaat cgcttttaaa caatttatcc gcttcttgta aagtaatacc
      781 atttttatac aaatcccatt cattttgccc tataagatgt ccatatccga tagttgcacc
      841 tttaacatat gaagtaattt cttttccatt ttgatcatta taaggtttga gtcttagctt
      901 ctctatattt tttaaaagat tttgaccatc attgcttaga tgagtgattt tttcttgggt
      961 attgttttca ctagaactta tattattgct ttttgtagtg tttgtgtatt ttgtgccatt
     1021 atttatattt acatctttat tttttgcttt tattttgttt tcactaaccc catttaccac
     1081 cacaaattta ccaacataaa gctcttgttt tct
//
LOCUS       DARGED010000209         1085 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.211, whole genome shotgun sequence.
ACCESSION   DARGED010000209 DARGED010000000
VERSION     DARGED010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.211"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(83..947)
                     /gene="dcuC"
                     /locus_tag="SFZ84_001755"
                     /pseudo
     CDS             complement(83..947)
                     /gene="dcuC"
                     /locus_tag="SFZ84_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT          409 a          186 c          156 g          334 t
ORIGIN      
        1 agatttggat agaacttgca aaaaactttc ttcaatattt atacttttaa attttgatgc
       61 aaatcctatt caatatagca ttggcaaaat aaactaaaaa gcttaaaata gctatactca
      121 aaagaattcc aaaccatgca aaatttcctg ttccaagatt tgaaaccgcg ttagcaagga
      181 tattaactcc accaagtgct ttaatgcctt tagcacatac tccagcggcg atgattatgc
      241 ttacgactga gataaaaatt tcagccatag ccttttaaaa tcaccatcat atcttcgcct
      301 aattttctaa catttctgtg tcttgcaaat tcaacaagaa aaactaaaga aattcttaca
      361 aaatttgcta tcacaacatc gagcttgata gtaaaaaaat acgctataaa taaaaatata
      421 acaggtaacc aaggaaagag tgtgtaaaaa gtagggcatt taggatcaat gatttgcgga
      481 atttcaactt catcatttaa aacacctttt tctttatctc ttttatcaat ccaagcaaaa
      541 taaaaaggaa tcaagatggc aataattaca acataggtaa tcacactata aatttggtaa
      601 tttaaaaaag ccttacgaca ttatcacttt gtcctaccat atctgccata ttgattgaat
      661 ttccatcttt tggatcataa tcaagtgcaa ttaaagaaag cgcacataca gttgtaatag
      721 gacggatttt aagtgagatt aaaacaggat acatacatgc taacaaaagc aaaagcaatt
      781 cagcatagct agaaatgacg atttttaaag ccattccaac aacaaaagtt ccacttaaaa
      841 ttaagtattt attttttgat ttttcctgag ggtttatttg ctaaaaaagc aagttttgcc
      901 gaagcattga tatgtttcat gtaagcagta aagcctgcca cactcatgat aataagccct
      961 gctccagaaa gctgactttt aaaagttgct gtgataaaag ataactatca agtaaaacat
     1021 ttaaaagctt gtatgttctc tacttggagc ttttggtata ggtgttcctg tgatataaaa
     1081 agcaa
//
LOCUS       DARGED010000210         1052 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.212, whole genome shotgun sequence.
ACCESSION   DARGED010000210 DARGED010000000
VERSION     DARGED010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.212"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1052
                     /locus_tag="SFZ84_001756"
     CDS             <1..>1052
                     /locus_tag="SFZ84_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203834.1"
                     /translation="YGIGNALLIKNLAKHYKHLFVFESEIELFILALSTIDLSEELCS
                     GKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYEMFVNNVYYKKFYEDIWHKADELCE
                     KNIKVVIRNLNSSLCIGFECYSHLLQNIPSMLESIPFQRILNERKNKFENAIVVSAGP
                     SLAKQLSLLKAYQDKAVIFCADGALSMLEKEGIVPDYVTNLDFTDLAMKFFQNKENKT
                     SLNVLSCATHLSLVHFLDNKSVVLRDDPLYQRFNLNDFGYIDTGTHVSHFSYTLALAL
                     GFKNIIMIGQDLAFDEEGNSHSKGFDFGEKFSGEENIDKLKVPAYAGKGEVLTHTTWN
                     DYRIKLEYLFACNDQKA"
BASE COUNT          365 a          122 c          185 g          380 t
ORIGIN      
        1 tatggtatag gcaatgcttt actgattaaa aatttagcta aacactataa acatcttttt
       61 gtatttgaaa gtgaaatcga actttttatt ctagctttaa gtacgataga tttgagtgaa
      121 gagctttgta gtggaaaaat ttatcttgtg gatatcgaag aagaaagagt ggatattcaa
      181 ctacttatac tttttgatat gaaagatatg tttgagtact taagtttata tgaaatgttt
      241 gtgaataatg tttattataa aaagttttat gaagatattt ggcataaagc agatgaactt
      301 tgtgagaaaa atataaaagt tgtgataaga aatttaaatt ctagtttatg tatcggtttt
      361 gagtgttatt ctcatctttt acaaaacatc ccttctatgc ttgaaagcat tccttttcaa
      421 agaatcttaa atgaaagaaa aaacaaattt gaaaatgcta tagtagtttc tgcaggacct
      481 agtttagcca agcaactttc tttacttaaa gcttatcaag ataaagcagt gatattttgc
      541 gcggatgggg ctttgagtat gcttgaaaaa gaaggtatag tgcctgatta tgttacgaat
      601 ttagatttta ctgatctagc aatgaaattt tttcaaaata aagaaaataa aacttcttta
      661 aatgtgcttt catgtgctac tcatcttagc ttggttcatt ttttagataa taaaagtgta
      721 gttttaagag atgacccttt atatcaacgc ttcaatctta atgactttgg ttatatagat
      781 acgggtactc atgtaagtca tttttcttat actttagctt tagctttagg atttaaaaat
      841 atcatcatga taggacaaga tttagccttt gatgaagaag gaaattcaca ctcaaaaggt
      901 tttgattttg gagagaaatt tagtggtgaa gaaaatatag ataaacttaa agtccctgcc
      961 tatgcaggta aaggtgaagt tttaacccat acaacttgga atgattatcg tataaaactt
     1021 gaatatcttt ttgcttgcaa tgatcaaaag gc
//
LOCUS       DARGED010000211         1036 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.213, whole genome shotgun sequence.
ACCESSION   DARGED010000211 DARGED010000000
VERSION     DARGED010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.213"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(15..1034)
                     /gene="flgS"
                     /locus_tag="SFZ84_001757"
     CDS             complement(15..1034)
                     /gene="flgS"
                     /locus_tag="SFZ84_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG8203835.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAARLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
BASE COUNT          340 a          188 c          129 g          379 t
ORIGIN      
        1 aaaaaaaata tttatcacac caaaggtaag gtaaaataaa aattcttagg atcactttga
       61 aaacttaact ctcccttatg agcgtttatg atttctttag aaagagacaa gccaagtcca
      121 ttgcctttaa gttttgttgt tttaaaagct tcaaaaacca atttctcatc ttttatttca
      181 caaccattat catacactct gatgcatatt ttttcattat cataacttgc taaaatttta
      241 atcataggct tttcacattc gctttcttct atcgcatcaa tagcattata aatcaaattt
      301 tgcaaaacca aaccaagaag agctttatca gcacaaatct gcttatccaa aaaagatatt
      361 tcaaagtcta tttgagaagt gaaattataa gagttaatgg cactttcaca ctcttctttt
      421 aactctaaaa gattaaaatt taaagcattg atgtgtacac ccttagtaaa aagtagagtt
      481 gaatttacga tacgctccac tctagcaata gccttttgga tttcaagaac tatatgctta
      541 tttttaagct cactacgagc aaaaagggtt gaagcaagta aagatataga tccaatagga
      601 tttcttatct catgtgccaa acgagccgct acactaccca tgcttgcaag cctttcattg
      661 cgtttttcat cgctaatatc tgtagctgaa actatagttt tttcattatg cgctatgatt
      721 tttaccgcat aaaacctacc ttcaaattca agctcatcac gaattttatc aagactaatg
      781 atactaagta attttggatt tttcaaggct tcttgatttt gtaaaataat atttttttct
      841 ttatctaaaa tccaaagcgc actaggcaac acctctataa tctcatcaac cattgcgcgt
      901 aaggagttat agttttcatt taaagttttg tattcatttt ctattacata agtttgttct
      961 ataagacttt ctaagccttt ttgtagggtt tctttttcat ttgagtctaa actttttaaa
     1021 atactttcat tcattt
//
LOCUS       DARGED010000212         1013 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.214, whole genome shotgun sequence.
ACCESSION   DARGED010000212 DARGED010000000
VERSION     DARGED010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.214"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..131
                     /locus_tag="SFZ84_001758"
     CDS             <1..131
                     /locus_tag="SFZ84_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HEG8203836.1"
                     /translation="KVENDFNVFGAKVDLIIANRFDDKLKEIKDKVFSADVFYTDI"
     gene            141..>1013
                     /locus_tag="SFZ84_001759"
     CDS             141..>1013
                     /locus_tag="SFZ84_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203837.1"
                     /translation="MKTVGVVIPIYNVEKYLRECLDSVVNQTYKNLQVVLVNDGSTDE
                     NSLNIAKEYTLKDERFILFDKENGGQSTARNVGIEFFSKEYDFKNITQELKENSLVEF
                     KLDNEDNPYNIYKIYKSSNFFKNKDELLNFKAPDIDYIIFLDSDDYWELNCIEECVPR
                     MDGVEVVWFDSCSIFEEGFKKQWSSLLKLYDLHEGVIKSKVWLEYSINKKIYNFYFTW
                     SGMIDFIYLKNIKLKFIDYIIHQDHHFGMLLFAKCKYIYIFPSSMHTYRIRSNSTINL
                     SDSELQIHIPRYMQS"
BASE COUNT          385 a           90 c          172 g          366 t
ORIGIN      
        1 ttaaagtaga gaatgatttt aatgtttttg gagctaaagt tgatttgatc atagccaatc
       61 gttttgatga taagcttaaa gagattaaag ataaagtttt ttcagcagat gtattttata
      121 ccgatattta ggaaattact gtgaaaactg taggtgtagt tatcccaatc tataatgtag
      181 aaaaatattt aagagaatgt ttagatagtg ttgtcaatca aacttataaa aatttacaag
      241 ttgtacttgt aaatgatggt agtacagatg aaaactcgct taatatagcc aaagaatata
      301 ctttaaaaga tgaaagattt atactttttg ataaggaaaa tggggggcaa agtacagcaa
      361 gaaatgttgg catagaattc tttagtaaag aatatgattt taaaaacatt acccaagaat
      421 taaaagaaaa ctctttagta gaatttaaac tagacaatga agataatcct tataatattt
      481 ataaaatata taaaagttca aatttcttta aaaacaaaga tgagctttta aattttaaag
      541 cccctgatat tgattatatt atctttttag attctgatga ttattgggaa ttaaattgca
      601 tagaagaatg tgttcctaga atggatgggg ttgaggtggt ttggtttgac agttgtagta
      661 tatttgaaga aggatttaag aaacaatgga gtagtttgtt aaaattatat gatttacatg
      721 agggggttat aaagtctaaa gtttggttgg agtatagtat aaacaagaaa atttataatt
      781 tttatttcac ttggtcgggt atgattgatt ttatttattt aaaaaacatt aagcttaaat
      841 ttattgatta tattattcat caagatcatc acttcggcat gttattattt gccaaatgta
      901 aatatattta tatttttcca tcatcgatgc atacttatag aataagatct aatagtacaa
      961 ttaatttaag tgatagtgaa ctacaaattc atattccaag atatatgcaa agt
//
LOCUS       DARGED010000213          991 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.215, whole genome shotgun sequence.
ACCESSION   DARGED010000213 DARGED010000000
VERSION     DARGED010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.215"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>991)
                     /locus_tag="SFZ84_001760"
     CDS             complement(<1..>991)
                     /locus_tag="SFZ84_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG8203838.1"
                     /translation="KLFMLGFTLWKRHFIKPFFKAKDNKIIFLNSLKSLARYKLKEND
                     KFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLI
                     VDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKI
                     NAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGN
                     RVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPF
                     YAGWGLTKDKYRCERRTRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIM"
BASE COUNT          334 a          169 c          136 g          352 t
ORIGIN      
        1 cattatatct aaacaaactt caatttcaca taaagttttt gttttaggat ttatatatct
       61 tggatatatg atcaaagcac ctgctacaag ctcttctagg cttagttttc ttgttcttct
      121 ttcgcatcta tatttatctt ttgttaaacc ccagcccgca taaaaaggca tgccataagt
      181 aaaaactttt ttagctctta aaagagcatc aaaaccactt gtagaagtaa tagtgtgaat
      241 ttcatcagca atttttatag cgctatcaat actgcaatct tttacaatct catcacaaaa
      301 ttccaagatg agtgtttcat cttttaaacc tacacggttg ccgcttaaca catcaggatg
      361 gggtttaaag atgatataag catcttgatt tttagaacgc acctccttaa gcaaatcaag
      421 agtagataag ccaaaacccc ctaaaatcat cgaagcatca tcttcaactt gagcagggat
      481 taaaataatc ttttgtccta ttttggcatt gatttttaag tcttcatgct ttaagccatt
      541 gtattttgaa aagcggttct caagtaagat ttttataata ttttttgccc tatttagcat
      601 attttcatca aaaatttcgt tttgcaaaag ctcttctaat ttacttgctt tatttggatc
      661 tatgtaaagt cctttatcat caacgattaa agaaaaaggg cgcgtaagat cagaacctaa
      721 agagattgag cgaataaatc catcttcaac taaagaaatt ttgggagtaa aatggagcaa
      781 attctcatct tgcgcttttt ttataagagt agttttaaga gcgttataat ctatcctttt
      841 accccaaatg aaaaatttat cattttcttt aagtttatat ctagctaaag attttaaaga
      901 atttaaaaaa ataattttat tatctttggc cttaaaaaaa ggcttgataa aatgcctttt
      961 ccataaggta aaacctaaca taaaaagctt g
//
LOCUS       DARGED010000214          975 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.216, whole genome shotgun sequence.
ACCESSION   DARGED010000214 DARGED010000000
VERSION     DARGED010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.216"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>975)
                     /locus_tag="SFZ84_001761"
     CDS             complement(<1..>975)
                     /locus_tag="SFZ84_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8203839.1"
                     /translation="FYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDKHVIF
                     DLNLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPFWTVR
                     FLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIESENEI
                     SLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVFKLENL
                     ENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKELTLK
                     RSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWF"
BASE COUNT          347 a          154 c           90 g          384 t
ORIGIN      
        1 aaaccaaaat ttaaaatcat tttctttggc taatttagaa atcataacaa tatcttcaaa
       61 agtatttttt ataataaaaa gatttgattt gatatgtatg attttatctt gcaaaatttc
      121 atcttgctct aaaaaaatct tacttctttt aagtgttaat tcttttttta ctcttcttgc
      181 gctttcttca agtagatttt catcttcaaa accttgtttt gcattttcta aaagtttatc
      241 aagaactcta aaataaaaag cattataatt taaagcctta gcctttagcc aagttaaagt
      301 atataaaagc tctaaatttt ctaaattttc tagcttaaaa accaagctac ttacaacaat
      361 aggattgtat atatcttctt tttctacaag atcttttaag gcattattgt ttttaaatat
      421 cttaagaccc cattctaaaa tttcattctt taaatcaaat ttagagcaat acgctctata
      481 tatgcctgct aaagaaattt cattttcact ttctatagcg cttaaaagta tcacaagctt
      541 taaaatcatt ttttcatcgg ttttaagttt ttggagtatc tcaagctcat cttcgtattt
      601 ttcaaattca cttaacataa gaaaaacttg ctcatcaaaa ctataatttc cttcttcatc
      661 gcttaaaaaa cgaactgtcc aaaaaggctt acataaatct tttaaaattc cactatcaag
      721 caaaagtttt aaaacacaaa aactatgcct tttataaaaa attttctcaa aaagtattaa
      781 agctttttct atatcttttt taccgtattt caatcttctt agggcaaaaa ccaagttaag
      841 atcgaaaata acatgtttat cttcaagttt taataagtat tctaaaactt ccacaagagt
      901 tttaaattta tattcttgtt taagagtatg atttaatcca tcttgaattt gctttgctaa
      961 aaagtgtgta taaaa
//
LOCUS       DARGED010000215          968 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.217, whole genome shotgun sequence.
ACCESSION   DARGED010000215 DARGED010000000
VERSION     DARGED010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.217"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            368..631
                     /locus_tag="SFZ84_001762"
     CDS             368..631
                     /locus_tag="SFZ84_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014769654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203840.1"
                     /translation="MLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQ
                     IYYLSREIATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(619..>968)
                     /locus_tag="SFZ84_001763"
     CDS             complement(619..>968)
                     /locus_tag="SFZ84_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203841.1"
                     /translation="ILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTA
                     CVFIGYDIFKVYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKAN
                     LEQYVLDKIIHSK"
BASE COUNT          455 a          143 c          107 g          263 t
ORIGIN      
        1 aaaagaagaa aataaaaaaa ctaaaaaaaa ttttttattt agcagaaaaa aagcaaacga
       61 aataaaaaat atccaaacca aagcacaaat tcaaacaaaa agcaatcaag ctaccactca
      121 aacaaaacaa gaaaaaaagg aacttacaaa ttctatagaa aaaattcaaa aaacagaaac
      181 taaaatacaa aaacctctaa ttatagaaaa aaaactagat gttaaaaatc aacctaatat
      241 caagaaaagt ttagaaaatt tacaaaaaaa aataacacca caagaaaata aacaagaact
      301 tccaaaacca tctaatcaag ctcaagaaaa acaacaaaat gatgaagatg ctcaaaaggc
      361 aaaaaatatt ttactagaag gcttctctaa tgctaccaaa gaagatagaa acctaaactt
      421 caatcatctt ctttttgcag ctttacttgt tagttttgca ttatttttat ttgccccaca
      481 aatttatatt agaaatcaaa tttattatct tagtagagag attgctacat taagaacaga
      541 agaaagtgtt ttaaacgagg aaaataaaga cttaaaaaga agacttgaaa atatgcgatt
      601 ccaaaatcaa attttagatt atttagaatg aataatctta tctaaaacat actgctctaa
      661 atttgctttt ggaatttctt cttttaaagc ttctttataa aattcacccg ccattgtaga
      721 gtacttttca taagcaaaat aaggaaagtg taaagcccag gctttttgta ttattttttt
      781 tgagattatt ttgcgagtat aaactttaaa aatatcatat cctataaata cacaagcagt
      841 aaccataaca gcgctcacta tgcttatatg aaagtcaagc tttgttaaaa aataatgagt
      901 aatcaaaagc aatggcaata aaatcacagc gcaaaaaaca ccaaaataaa tataagaatt
      961 tagaattt
//
LOCUS       DARGED010000216          965 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.218, whole genome shotgun sequence.
ACCESSION   DARGED010000216 DARGED010000000
VERSION     DARGED010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.218"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..241
                     /locus_tag="SFZ84_001764"
     CDS             <1..241
                     /locus_tag="SFZ84_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203842.1"
                     /translation="IQKIKYNKDVKELFINESLYFNKVSPEIYEFKIGGYAVLDKYLK
                     SHKEEDIDHKYFTLIIQTLDETLKIQDEISKINLS"
     gene            complement(247..957)
                     /locus_tag="SFZ84_001765"
     CDS             complement(247..957)
                     /locus_tag="SFZ84_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8203843.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANVMLEILQENAKTHTISNVKTLNLDFESFYKNNN
                     AKFDLAFLSMSPALQNEKDYKAFLNLASKKVYLGWASRRKSSFLDPIFEHFNTHFKGF
                     YESDLQGFLNTQNIPYECEIFNETRVVKRDKQSAIENALWHLSMNGINTNKQELESFV
                     KDEVEEIIEAKIKLLIIS"
BASE COUNT          337 a          149 c          117 g          362 t
ORIGIN      
        1 aatacaaaaa atcaaataca acaaagacgt aaaagaactt ttcataaacg aaagtttgta
       61 ttttaataaa gtaagtcctg aaatttatga gtttaaaata ggcggctatg ctgtgctaga
      121 taaataccta aaaagccaca aagaagaaga catagatcat aagtatttta ccttgatcat
      181 acaaacttta gatgaaactt taaaaattca agatgaaatt tcaaaaatca atcttagcta
      241 gtataactag ctaatgatta aaagttttat cttagcttct ataatctctt ctacttcatc
      301 ttttacaaag ctttctaact cttgtttgtt tgtattaata ccattcatac ttaaatgcca
      361 caaagcattt tctatcgcac tttgtttgtc tctttttacc actctagttt cgttaaaaat
      421 ttcacactca taagggatat tttgtgtatt taaaaaacct tgcaaatcac tttcataaaa
      481 acctttaaaa tgagtgttaa aatgctcaaa tataggatct aaaaagctac ttttacgcct
      541 acttgcccag cctaaataca cttttttaga agctaagttt aaaaaagctt tatagtcttt
      601 ttcattttgt aaagcaggag acatacttaa aaaggctaag tcaaattttg cgttattatt
      661 tttataaaag ctttcaaagt ctaaattcag ggtttttacg tttgatatgg tatgagtttt
      721 tgcattttct tgtaaaattt caagcataac atttgcacta tctagagcta aaatttcttt
      781 agcttctttg gctaaatgta aagtccaaac cccagttcca catcctatat ctataatact
      841 tttatcttga aaggaaatct ttaaattttg taaatattca aaagtttgtt tttgtatagt
      901 gtttaaagtg ttttgatatc ttgcgtaagt tttagccttt ttatcccata aattcatata
      961 ctttc
//
LOCUS       DARGED010000217          964 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.219, whole genome shotgun sequence.
ACCESSION   DARGED010000217 DARGED010000000
VERSION     DARGED010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.219"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            36..923
                     /locus_tag="SFZ84_001766"
     CDS             36..923
                     /locus_tag="SFZ84_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG8203844.1"
                     /translation="MEIYKKLALKNSSVLISQEQNNSSQATQTQNSITIKKEEKQDFS
                     RLALANYLGENESFNPLGISSYKMNYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFE
                     NLLGLDEKYYIAYTQTSWWQIYEHSSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGI
                     LHESNGKGDENLQSRSWNRIYVSTAILYNKFLFVPRLWYRIPENKKDDDNPAILHYMG
                     NFDVNLAYLGDDYFINLMLRNNLKFHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGES
                     LIDYNKHLQRLSTGFLISY"
BASE COUNT          352 a          137 c          137 g          338 t
ORIGIN      
        1 tagagtatga aaaacaaggc gattataaaa aagctatgga aatttacaaa aaactcgctt
       61 taaaaaattc atctgttttg atttctcaag aacaaaataa ctcaagtcaa gcaacacaaa
      121 cgcaaaattc tatcactata aaaaaagaag aaaaacaaga cttttctcgc ttagctttgg
      181 ctaattatct tggtgaaaat gaaagcttta atccccttgg cattagctct tataagatga
      241 attatttttt accttttgct tatagtttta attctttagg agtaaataat aataagagtg
      301 aggcgaaatt ccaacttagt gttaaaaaaa gactttttga aaatttacta ggactagatg
      361 aaaaatatta tatagcctat actcaaactt cttggtggca aatttatgag cattcttctc
      421 cttttagaga aaccaactat caaccagaat tttttataga tcttccttta tatcttaaag
      481 attatgaatt ttttaacaat ctacgcgtag gtatattgca tgaaagcaat ggcaagggag
      541 atgagaattt acaatctcgc tcatggaata gaatttatgt atctactgct attttatata
      601 ataaattttt atttgttcca cgcctttggt atagaattcc tgaaaacaaa aaagatgatg
      661 ataatcctgc catcttgcat tatatgggaa attttgatgt gaatttagcg tatttaggtg
      721 atgattattt tatcaatctt atgctaagaa ataatcttaa attccacaat aacaaaggcg
      781 ctatacaagt tgatctagga tatgatattt ttaataacgg aatttattgg tatttacaat
      841 actttaatgg ctatggagaa agccttatag actataacaa acacttgcaa agactttcca
      901 ctggattttt gatttcttac taaaatatcc tttgtagttt tatcatttct taaaacaaat
      961 ttca
//
LOCUS       DARGED010000218          961 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.220, whole genome shotgun sequence.
ACCESSION   DARGED010000218 DARGED010000000
VERSION     DARGED010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.220"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            11..>961
                     /locus_tag="SFZ84_001767"
     CDS             11..>961
                     /locus_tag="SFZ84_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203845.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIIVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNAQIFKLSEAVDKISFM"
BASE COUNT          363 a          138 c          132 g          328 t
ORIGIN      
        1 gcattacaca atgaaaaaaa tatttttaac actattttgt ttaatatttc tatgtgcttg
       61 tggcaccaaa agacaatatt ttgaaccaaa acaaaccgat ggagatttaa gtcataatag
      121 caatttaaaa agtaaaatcg ttgattggaa tctagtttct gcaaaactta gcaataatac
      181 agctatctta aaaaataata tttccataga caagtttaaa cttcctaaaa attatatgct
      241 tctagcttat caagatgggg aatattttac tgcagataat aatggaaatt taaaaatttt
      301 tgacaattct tataatgaaa tttataattt tcaatttgac gctagtgttg taggagtagc
      361 ttctaatgga gatgatttag cccttgtact tgcaaataat actatagttc ttgcaaatcg
      421 ttctttgggt attaaattta gtcaaaccct aacctcagct ccagctcaag acagtcgtac
      481 cgctaatcct atatttttag acaatatcat cgtatatcca acgctagatg gcaaaatttt
      541 aattctttca agaaacaatc ttcaagtcat taaagacgtg gttatttcgg cagaaaattt
      601 tttcaacaat gtaatccatc taagcgtaat cggagataaa cttatagcag caacagctaa
      661 aaaaatcatt attgtaagcc ccgctagaac tctttatctt gatgctgaca taaaagatgt
      721 tgcacttagc gatgatggta tttttatact agaaaaagat ggcactatta ttaaaactga
      781 ttataactta agaaaaattg cggaaaaaaa atttgaattt gctatttttg taaaaagtaa
      841 tatatacaat aattatttat atatttttga aaaaacaggc tatcttatca aaatgaatct
      901 aaatttagat aatgcacaaa tatttaaact ttcagaagct gttgataaaa tttctttcat
      961 g
//
LOCUS       DARGED010000219          941 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.221, whole genome shotgun sequence.
ACCESSION   DARGED010000219 DARGED010000000
VERSION     DARGED010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.221"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..158
                     /locus_tag="SFZ84_001768"
     CDS             <1..158
                     /locus_tag="SFZ84_001768"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203846.1"
                     /translation="NEESLKAIGKRENNTSKASANADITSETKTPPNFIGRLATTIII
                     EDGLYMG"
     gene            177..>941
                     /locus_tag="SFZ84_001769"
     CDS             177..>941
                     /locus_tag="SFZ84_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203847.1"
                     /translation="MSETYEIYTPNGLTLDVEKDTNKILFKENVKPTGNYTEEYSKAV
                     FKSYHIMKNSPYKDYKPQYLDPNFYTGQKSTLVEFKEWQSIYLKDPIKGAIAPWTKAE
                     KAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYDAYANVDEKGRLVNEDYAYIYDEVSS
                     HRGTLKSYSFFNEWELSALLLGNIKASPTAAVGFKARQQQALFLQAQLGDKNAFKSLG
                     LAVLCSNSFLTGQHWNKLRAKMIYDLHDYHYESLLDE"
BASE COUNT          372 a          135 c          159 g          275 t
ORIGIN      
        1 gaaatgaaga aagcttgaaa gctataggca aaagagaaaa taacactagc aaagcaagcg
       61 caaatgctga tatcacatca gaaacaaaaa ctccgcctaa tttcataggc agactagcca
      121 ctactataat catagaagat ggtttataca tgggttaaat taagaaagga tagataatga
      181 gtgaaactta tgagatttat acacctaatg gattaacatt agatgtggaa aaagatacca
      241 ataaaatact ctttaaagaa aatgttaagc ccacaggcaa ctataccgaa gaatattcca
      301 aagcggtttt taaatcttat catattatga aaaactcccc ctacaaagac tataaacccc
      361 aatacctaga tcctaacttt tatacagggc aaaaatccac tctagttgaa tttaaagaat
      421 ggcaaagtat ttatttaaaa gatcctataa aaggagctat agctccttgg actaaagcag
      481 aaaaagctta ttataaatct ttaaaaacca aaagagaaag atataaatat ttagcaataa
      541 gaagtggatt aagatctgtg gttatagata taccctatga tgcttatgct aatgtagatg
      601 aaaaaggaag attggttaat gaagattatg cctatattta cgatgaagta agttctcatc
      661 gtggaacatt aaaatcttat tctttcttta atgaatggga attatctgct ttacttttgg
      721 gaaatattaa agctagtcct acagctgctg taggatttaa agcaagacaa caacaagcat
      781 tgttcttaca agctcaactt ggagataaaa atgcttttaa aagtttaggt ttagcagtat
      841 tgtgttctaa ttcttttctt acagggcaac attggaataa gcttagggca aaaatgattt
      901 atgatttaca cgattatcat tatgagagtt tattagatga a
//
LOCUS       DARGED010000220          929 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.222, whole genome shotgun sequence.
ACCESSION   DARGED010000220 DARGED010000000
VERSION     DARGED010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.222"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            267..>929
                     /locus_tag="SFZ84_001770"
     CDS             267..>929
                     /locus_tag="SFZ84_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEG8203848.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYDKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITP"
BASE COUNT          403 a          122 c          100 g          304 t
ORIGIN      
        1 atctacaagc attccatcgt taaaaagtgc atttgcctct aataaatctc ttataagaac
       61 aggttgctct gatactttaa ataaaaaacg aaggctaaat tctttaaatt ttttcataat
      121 ccacgcttta ttttttaatt aaaattttat ccaaagaaaa ttaattccaa ctaaaaaatc
      181 attttcataa ataagcacaa gtctttaaag ttttttagat ataatttaaa atgtcaaatt
      241 tttaaaaata ctttagaaag aaagccatga attactatca agaacttaaa aaatacctca
      301 acaataatct ttttacaagc tattctttag aaattgactt tcctaagatt tataatttca
      361 acgcaaatca aaaagccttt agagatattt taactaaaat tacaaaaatt tacgacaaaa
      421 ataaatttat aaaacaaaac gaacatcaat ttgaagatga atttatatca aaagtattag
      481 aaattttagg gtggtgcttt gtaagacaag atgaaaaaat catacaagga aaattggaaa
      541 aacctgattt tctacttttt agcaatgaca aattaaaatc aaaatacgaa aatttagaca
      601 aagaaacaaa aaaatcaagc aatgatttca caatcatttt agagtcaaaa gcttataata
      661 tagaaataga caataaaaaa gtaaaagaca accctcactt tcaaattcta agatatctag
      721 gcaatcttaa gaaaaattat ggttttttaa ccaatggtag attttggcgt ttttatgata
      781 attctatact gaattcaaac aaagtttttt acgaaatcaa tctagaaaaa atcattgaag
      841 atcaaaatat tgaagctttt gcgtattttt atagtgtatt tagcgctttt aatttcacag
      901 aaaaagaaga tcatttagaa ataactcca
//
LOCUS       DARGED010000221          925 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.223, whole genome shotgun sequence.
ACCESSION   DARGED010000221 DARGED010000000
VERSION     DARGED010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.223"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..347
                     /locus_tag="SFZ84_001771"
     CDS             <1..347
                     /locus_tag="SFZ84_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8203849.1"
                     /translation="KTAFFIVCENLKYLLGLLSSNLITYYYKNFSQGCKLGTKGYQYN
                     KHALENLPIPKINSKNQNIVDELINLVDEILKAKEQDKNANTQELENKINSLVYKLYN
                     LTEEEIKIIEGK"
     gene            347..>925
                     /locus_tag="SFZ84_001772"
     CDS             347..>925
                     /locus_tag="SFZ84_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203850.1"
                     /translation="MKRNIYEIELEIPNSGIFIMSLENENLIISLNVVKFIEINAEKI
                     ATLDGKLDAGELAKPLNPYIIYKTLEENHKNNFNGVKIIDKIEEENNIVYYFNFGLTL
                     NTFIEQIKENIDETLLKKINKMKNFISFCCFSCEIAGDTTSISLSELENLKNSYGYEG
                     KNYKSIFKKEVYINYSCLERIVFSNCEFKSKIS"
BASE COUNT          421 a           95 c          116 g          293 t
ORIGIN      
        1 aaaaaacagc tttttttata gtctgtgaaa atttaaaata tttactagga ttattatcat
       61 caaatttaat tacatattat tataagaatt tttctcaagg ttgcaaatta gggacaaaag
      121 gttatcaata taacaaacac gctctagaaa atttacctat accaaaaata aattctaaaa
      181 atcaaaacat agtcgatgag cttataaatt tagtcgatga aattttaaaa gccaaagaac
      241 aagacaaaaa cgcaaacacc caagaactag aaaacaaaat caattctttg gtttataaac
      301 tttacaatct caccgaagaa gaaataaaaa tcatagaagg gaaataatga aaagaaatat
      361 atatgaaatc gaactagaga taccaaatag cggtattttt ataatgagtt tggaaaatga
      421 aaatttaatt atttctttaa atgttgtgaa atttatagaa atcaatgcag aaaaaattgc
      481 aactttagat ggaaagttag atgctggaga attggctaaa ccattaaatc cgtatattat
      541 ctataaaact ttagaagaaa atcataaaaa taattttaat ggcgttaaaa ttatagacaa
      601 aatagaagaa gaaaataaca ttgtttatta ttttaatttc ggattaacat taaacacttt
      661 tatagaacaa ataaaagaaa atatagatga aactttatta aaaaaaataa ataaaatgaa
      721 aaattttata tcattttgtt gtttttcttg tgaaatagca ggagatacta cttcaatttc
      781 cctaagtgaa cttgaaaatt taaaaaatag ttatggctat gaaggaaaaa actataaaag
      841 tatttttaaa aaagaagttt atataaacta tagttgcctt gaaagaatag ttttttcaaa
      901 ttgcgaattt aaatctaaaa tatct
//
LOCUS       DARGED010000222          916 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.224, whole genome shotgun sequence.
ACCESSION   DARGED010000222 DARGED010000000
VERSION     DARGED010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.224"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>916
                     /locus_tag="SFZ84_001773"
     CDS             <1..>916
                     /locus_tag="SFZ84_001773"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203851.1"
                     /translation="FINCVNQLLTNLNIKNILATSDNTYHIETDTDSDASNTKEVIQD
                     LGVDIDGKHYIVNLGDRFWDSHFLEPTIIELNYILNLMKNKEIDNLLEYNINKDEELW
                     TFIKYHNNVLATARTRYDDRILSYFSIPKLSNDFSNSLEYLQIHYLPKEPKKPLFAAN
                     IQGFSSTQLQALEEYKIKKAKYDEKLKWYELYKVKYEREQQIFNQKFKEYFSEIIFYQ
                     NRLYSHKKTQEKIILNAIIQQINQKDITYFNLYSVIEFLKENKAYYKYIDLNEIQDLI
                     LNDLDNKLGYFYCLYVCINLIVLREDKNT"
BASE COUNT          378 a           96 c          118 g          324 t
ORIGIN      
        1 tttataaatt gtgttaatca gctccttact aatcttaata tcaaaaatat tttagctaca
       61 agtgataata cttatcatat tgaaacagat actgattccg atgcttctaa tacaaaagag
      121 gtgatacaag atttaggagt agatatagac gggaagcatt atattgttaa tttaggggat
      181 cgattttggg attctcattt tttagagcct actatcatag aattaaatta tattttaaat
      241 cttatgaaaa ataaagaaat tgataacctt ttagagtata atataaataa ggatgaagag
      301 ctatggactt ttatcaaata ccataataat gttttagcta ctgcaagaac tcgttatgat
      361 gatcgtattt tgtcatattt tagtattcct aaactatcta atgatttttc aaattctttg
      421 gaatatttgc aaattcatta tttaccaaaa gaacccaaaa aacctttatt tgcagcaaat
      481 attcaaggtt tctcatctac gcaattgcaa gctttggagg aatataaaat aaaaaaagct
      541 aaatatgatg agaagttaaa atggtatgaa ctttataaag taaaatatga aagagaacaa
      601 caaattttta atcagaaatt taaagagtat ttttcagaaa taatttttta tcaaaacaga
      661 ctctattctc acaaaaaaac acaagagaaa attatattaa atgcaataat acaacaaatt
      721 aatcaaaaag atataacata ttttaatttg tattctgtga tagaattttt aaaagaaaac
      781 aaggcttatt ataaatatat agatttaaat gaaatccaag atttaatttt aaatgattta
      841 gataataaat tgggttattt ttattgcctt tatgtatgta taaatttaat agtattaaga
      901 gaagataaaa atactt
//
LOCUS       DARGED010000223          893 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.225, whole genome shotgun sequence.
ACCESSION   DARGED010000223 DARGED010000000
VERSION     DARGED010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.225"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>893
                     /locus_tag="SFZ84_001774"
     CDS             <1..>893
                     /locus_tag="SFZ84_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8203852.1"
                     /translation="HGIKPDYVCMLERTEITAEFFNNDFGEFDKDIVFIVKSVTHPHT
                     IKYLQKNNRAFILVSTYASFIQYLKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIG
                     QDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKGEVKTHHVWLMFKQNLEQDI
                     EKIQKYLDTKVYNCTEGGARIKGAIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNE
                     FLLKAYYKVCKSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQEIIQDIDKTK
                     TQIDELYNTQKDLIQILGPLLT"
BASE COUNT          350 a          104 c          129 g          310 t
ORIGIN      
        1 catggtataa aacctgatta tgtttgtatg ctagaaagaa ctgaaattac tgctgagttt
       61 tttaataatg attttgggga atttgataag gatattgtgt ttattgttaa atctgttaca
      121 catcctcaca ctatcaaata tcttcaaaaa aataatagag cttttatact tgtatccact
      181 tatgcaagtt ttatacaata tttaaaatta gattattttg gatattttaa catgggattt
      241 agtgttgcac atatggcttg ttatctttcc ttacatttaa atcataaaaa catcattttt
      301 ataggacagg atttagctta tgctgaaaat ggcaattctc atcctgatga ttatcaaaat
      361 tcagctaatt atgaaagtca aatgtatgaa catattttaa ccgaggctta tggggggaaa
      421 ggagaagtta aaactcatca tgtttggctt atgtttaaac aaaatttaga acaagacata
      481 gaaaaaatac aaaaatattt agatactaaa gtttacaact gcaccgaagg gggagcaagg
      541 ataaaaggag ccatagaaaa accttttctt tgggcttgtg agaatttact tgataaagat
      601 ttaaataaac cttttgaaaa attagaacct ttaagtttaa ataaacaaaa tgaattttta
      661 cttaaggctt attataaagt ttgtaaaagt attaaacatt gtagagattt taacgataat
      721 tttattaaag tttatgataa aataaaaaac tcttttatga gtttacaaaa ttctcaaaaa
      781 aatgaaattt ttattcaaga aattattcaa gatatagaca aaaccaaaac tcaaatagat
      841 gaactttaca atactcaaaa agatttgata caaattttag gtcctttact gac
//
LOCUS       DARGED010000224          892 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.226, whole genome shotgun sequence.
ACCESSION   DARGED010000224 DARGED010000000
VERSION     DARGED010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.226"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..828
                     /locus_tag="SFZ84_001775"
     CDS             <1..828
                     /locus_tag="SFZ84_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203853.1"
                     /translation="RLDLLRTNQIKLNETPGASYQDNGLWFQIFALAKSIYFINEAFY
                     MLRRDNPNSSVKSKEKVYCACEEYDFIRDFLKKHPDLEKTLAPICALHRFGNYMFTLE
                     RIDERYKLDFLKRFSQDFRKILKDKELDENLFGNINMQRINKIIENPVIYYYFSRGAR
                     ARLQNQLVYRLGKVVVEAKSFNKIIKLPFLMLKICLEHNFEHKVYRSIVQFRPDLKLL
                     PLECYLDYHEALVIKEHLSYKFGKLILLSFKGWYKGKIFILPFMLKKRYKEYKNKMI"
BASE COUNT          323 a           88 c          150 g          331 t
ORIGIN      
        1 cgattggatt tattaagaac aaatcaaatt aagttaaacg aaactccagg agcttcctat
       61 caagacaatg gtttatggtt tcaaattttt gctcttgcta aaagtattta ttttattaat
      121 gaagcatttt atatgcttag aagagataat cctaattcat ccgtaaaaag caaagaaaaa
      181 gtatattgtg catgtgaaga atatgatttt attcgagatt ttttaaaaaa acatcctgat
      241 cttgaaaaaa cacttgctcc aatatgtgct ttgcatcgtt ttggaaatta tatgtttact
      301 ttagaaagaa tcgatgaaag atataagttg gattttttaa aaagattttc gcaagatttt
      361 cgcaagattt taaaagataa agagcttgat gagaatttat tcggaaatat aaatatgcaa
      421 agaattaata aaataattga aaatcctgta atatattatt atttttctag aggagctaga
      481 gctcgtttgc aaaaccagct ggtatataga ttgggtaaag ttgttgttga ggcaaagtca
      541 tttaataaaa ttattaaatt accttttctt atgctcaaaa tttgccttga gcataatttt
      601 gagcataaag tttataggtc tattgtacaa tttagaccag atttgaagct tcttccatta
      661 gagtgttatt tggattatca tgaagcatta gttataaaag agcatttatc ttataaattt
      721 ggaaaattga ttttgctttc ttttaaggga tggtataaag ggaagatttt tattttgcca
      781 tttatgttaa aaaaaagata taaggaatat aagaataaga tgatataata tttttggcag
      841 tttgttttaa aggatgtttt aatgcagcga tttaaaaaat ggtttttgtc ta
//
LOCUS       DARGED010000225          881 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.227, whole genome shotgun sequence.
ACCESSION   DARGED010000225 DARGED010000000
VERSION     DARGED010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.227"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            9..443
                     /locus_tag="SFZ84_001776"
     CDS             9..443
                     /locus_tag="SFZ84_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8203854.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            440..661
                     /locus_tag="SFZ84_001777"
     CDS             440..661
                     /locus_tag="SFZ84_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8203855.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(651..>881)
                     /locus_tag="SFZ84_001778"
     CDS             complement(651..>881)
                     /locus_tag="SFZ84_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG8203856.1"
                     /translation="YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQ
                     KENLNMLEKAGFKKIESIFKWANFETFIAFKD"
BASE COUNT          370 a          130 c          120 g          261 t
ORIGIN      
        1 attgataaat gcgaagacta agtattttac ttgcaatttt aatagttatt aatataacag
       61 cttgtgatag taaaacagaa aattactaca aaaatcttcc tagcgaagca aaagaaaaag
      121 cgaaagaatg caaagaaagc ggaactctta gcgaagattg tattaatgca ttaaaagttg
      181 gtgttaaacc aacaaatgaa gagggtaaat acagtccaaa cacaccgaaa aaatctgata
      241 atcaaatatt agaagcttta aaacaaaatg atttaaaaaa agaaaaaacc acaaaagata
      301 ttaaccaaag ttcagaaaat aatgaaagta ttataatacc acctatagca gaaacacctt
      361 ctgaaattta tccttccaaa acaacagaaa acaatcaaag ttctatcttt agcgatgatg
      421 ttaatatgac acaggaaaaa tgaccatgaa aataactctt tttttaagcc ttattggtat
      481 attttttgca gcatgcgaac aaaccaaaag tgtagaatat tatcaaaatc accccgagga
      541 agcaaaaaaa agaagtttag aatgcagaca caaagctatc attagtcaag attgtgttaa
      601 tgcatataag ataggttttc caaaagatga atgggaagat gaaaatattt ctaatcctta
      661 aaagctatga aagtttcaaa atttgcccat ttaaaaatac tttctatttt cttaaaacct
      721 gccttttcta gcatatttaa attttctttt tgactataag gaattaaaac attttccaaa
      781 gcttctcttt tagctgcgat ttcaaactta gaatagcctt gtttttcttt ataatcagca
      841 taaagttcta tgatattttt agacaaaaaa gcatcttcat a
//
LOCUS       DARGED010000226          880 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.228, whole genome shotgun sequence.
ACCESSION   DARGED010000226 DARGED010000000
VERSION     DARGED010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.228"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..337
                     /locus_tag="SFZ84_001779"
                     /pseudo
     CDS             1..337
                     /locus_tag="SFZ84_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            423..842
                     /locus_tag="SFZ84_001780"
     CDS             423..842
                     /locus_tag="SFZ84_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG8203857.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
BASE COUNT          352 a          107 c          105 g          316 t
ORIGIN      
        1 ttacaagatt gtgttttttc ttttaataaa aaaatattga agtttcagcc tacccaaaac
       61 ctataaaaat tttcaataaa actactataa aaattaagaa ttttcctcat tattctaatt
      121 taaagattaa aatttatagt ttaaattcct atataggcga tatcattcct aaatttaata
      181 tagttaatgg tgatattctt ataaatttta taggtagaag cattaccgat gattctagat
      241 ttagggttga atttttaaac aataatgctc caactggttt tttctttgat tttgatgttg
      301 ctatgcaaaa aaatttcaaa caggtaacac acattgaaaa attttcaaaa ttttatattc
      361 aaataaaaat attttttgat ataatgaaca aatatttaat attataaaaa taaggataca
      421 atatgaaaaa aattcttctc ttaggtgctc tttttgctgt aaatctttgg gctgttaatg
      481 atatagaggt aaaaaatgcc tttgtaaaac aaactccacc tcatgcgcaa aatagtgcta
      541 tttttcttac tatttttaat aatactgata aggatattgc tctaataagt gccaaaagcg
      601 atatcagtga agtcagtgaa ctgcatacac atatacataa agatggaaaa atgatgatgc
      661 aaaaaattcc tgaaattatt ataaaagctc attcaagcac agagcttaaa tctggaggtt
      721 accatataat gcttttaaaa ctaaaaaaac ctattattaa agacacgaag gtaaatttag
      781 atttaaaatt taataatcac aaaaccatag agttaaaaaa tattgattct aaagaatttt
      841 aattaatgag aaaaattatt tttatcctag cttttgcttt
//
LOCUS       DARGED010000227          836 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.229, whole genome shotgun sequence.
ACCESSION   DARGED010000227 DARGED010000000
VERSION     DARGED010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.229"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>836)
                     /locus_tag="SFZ84_001781"
     CDS             complement(<1..>836)
                     /locus_tag="SFZ84_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsule biosynthesis protein CapA"
                     /protein_id="HEG8203858.1"
                     /translation="ANLPTREYLFDQDFIKSYYRQDIEFAYETPVLWSLYRQSIKNIL
                     KKPYEKEWGWYSTQGDLSEYFTDVDEGEYRTELVSCWKQIDFSSHVKKIFEKAHSKFL
                     DIGKFVAIHIRTGEVIHDEFYRNILYHCRYKIFPYPFALEIALKEIKKGHRVIFFGDD
                     LNLIQNLKEYCSFNKQAQENIFSIDDIIAFEQLDNGYDRLLFELVLMSKSEYIFGSGT
                     TGFSRCASWIENKIFINIFDHLSLIEQYEIILKYIDIENIDDLYRSCNYFFLFLLSEQ
                     LN"
BASE COUNT          311 a          140 c           83 g          302 t
ORIGIN      
        1 aattcaattg ttccgaaagt aaaaaaagga aaaaataatt gcacgatcga tacaagtcat
       61 caatattttc aatatcaata tattttaaaa taatctcata ttgttcaatg agcgacaaat
      121 gatcaaatat attgataaaa attttatttt ctatccaact agcacatctt gaaaatcctg
      181 ttgtcccaga accaaatata tactcagatt tagacattaa aaccaattca aaaagtaatc
      241 tatcatatcc attatctaat tgttcgaaag ctatgatatc atctattgaa aaaatatttt
      301 cttgagcttg tttattaaaa gaacaatatt cttttaaatt ctgtattaaa ttaagatcat
      361 ctccaaaaaa aataacacga tgtccttttt ttatttcttt tagagcaatc tctaaagcaa
      421 atgggtatgg aaagatttta tatctacaat gatatagtat atttctataa aattcatcat
      481 gaataacctc acctgttcta atatgtatag caacaaactt tccaatgtct aaaaatttac
      541 tatgagcttt ttcaaaaatt tttttaacat gagatgaaaa atctatttgt ttccaacatg
      601 aaaccaactc tgttctatat tcgccctcgt caacatctgt aaaatattca ctaagatcac
      661 cttgagttga ataccacccc cattcttttt cgtaaggttt tttcaaaata tttttaatgc
      721 tttgtctata caaactccac aatactggtg tttcataagc gaattctata tcttgtctat
      781 aataactttt aataaaatct tgatcaaaca aatactctct agttggcaaa tttgcc
//
LOCUS       DARGED010000228          835 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.230, whole genome shotgun sequence.
ACCESSION   DARGED010000228 DARGED010000000
VERSION     DARGED010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.230"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>835
                     /locus_tag="SFZ84_001782"
     CDS             <1..>835
                     /locus_tag="SFZ84_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203859.1"
                     /translation="AKQDENLNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDL
                     ISKLSSGFSTDNGEFLGQISRIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIE
                     NTSSNEILKPYLTKNAEVSKSGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQ
                     KILKGETDIEDYIKKENEKKMSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDL
                     REFANSSSIFQIYIDQNRNDFDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQK
                     QA"
BASE COUNT          359 a          117 c           95 g          264 t
ORIGIN      
        1 tcgcaaaaca agatgaaaat ttaaactaca ataaaattga tctaccttat cttttaaata
       61 gctatcatag ttcattaaaa tctataaatt cagaattttt acaagatgat aatgcttatt
      121 taagtcgcga tcttatttca aaactatcat caggtttttc aacagataat ggagaatttt
      181 taggccaaat ttcaagaatt tacaacaatc aagaagaaat tgatttggca ttaagtaata
      241 tcacaaattt aaatacttta atgttagata ataaaataac taattttcac tttgataaag
      301 ccatagaaaa cacttcttct aatgaaattt taaaacctta tttaactaaa aatgcagaag
      361 tatcaaaatc tggtctttta atgaatttta tctaccatga tataaaaact caaaacgaaa
      421 aagaatttaa cttttttatg aaacctgcca ctttagaact aagctctcat caaaatttac
      481 aaaaaattct caagggcgaa acagatatag aagattacat caaaaaagaa aatgaaaaaa
      541 agatgagttt tgatctttat ctttatgtga atggcgtaga taaaaaaaca agtactcaag
      601 ataaactatc tgtatttttt caacaatata ttaactacca aaaagatatg gatttaagag
      661 aatttgcaaa ttcaagttca atatttcaaa tttatatcga tcaaaatcgc aatgattttg
      721 atgctcttaa aaaacaatat caaaaccaaa gtcaagatac gcaaagatta gaagaagcaa
      781 atcaactacg ttctagctct atagaaaatt ttttagatcg tcgtcaaaaa caagc
//
LOCUS       DARGED010000229          828 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.231, whole genome shotgun sequence.
ACCESSION   DARGED010000229 DARGED010000000
VERSION     DARGED010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.231"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            177..>828
                     /gene="ung"
                     /locus_tag="SFZ84_001783"
     CDS             177..>828
                     /gene="ung"
                     /locus_tag="SFZ84_001783"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG8203860.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IVIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEF"
BASE COUNT          330 a          101 c          113 g          284 t
ORIGIN      
        1 taataagaaa actactttca aatacaataa attaagtatt tttatatcct attatgtctt
       61 tatatttaat ttttattaat ataaaaaatt ttatttactt caaaaaaaat taatatattt
      121 ttgcaagctt ttttgttaga ataaaatttt taataattta aataattagg gataatatgg
      181 aagaaattac aataaacata gataagatta aaataaatga tgactggaaa gaatttttaa
      241 gagacgaatt tcaaaaaaaa tattttctag aaatcaaaaa acaataccta aatgcgatta
      301 atcaaaatat agttatttat ccgcctgcaa atttaatctt taatgctttt aatttatgtc
      361 ctttaaaaga aattaaaatt attatcctag gacaagatcc ttatcatcaa ccaaatcaag
      421 caatggggct tagtttttcg gttccaaaaa atgtaaaaat cccaccaagt cttaataata
      481 tttttaaaga attgcaaaat gatttaaaca tcactccagc aaaaagcgga gatttaagct
      541 cttgggcaaa acaaggagtt ttgctcttaa attctattct tagcgttgaa gcaaataaag
      601 cagctagcca tagttcgtgg ggttggcaag aatttagtga tgctataata cataaattaa
      661 gtaatgaaaa atcagggctt gtttttatgc tttggggaaa ttacgcaaaa aacaaggaga
      721 ttttgattga taatactaag catttgattt taaaagcagc tcacccaagc cctttagcta
      781 gaacaggatt tttaggttgt aagcattttt caaaggctaa tgaatttt
//
LOCUS       DARGED010000230          821 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.232, whole genome shotgun sequence.
ACCESSION   DARGED010000230 DARGED010000000
VERSION     DARGED010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.232"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..171
                     /locus_tag="SFZ84_001784"
     CDS             <1..171
                     /locus_tag="SFZ84_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203861.1"
                     /translation="DKLKHYEKNQKSKLESFEKVLQSLKNQDINILNSFEENLEKIEK
                     LKQLEMGLLNAD"
     gene            161..>821
                     /locus_tag="SFZ84_001785"
     CDS             161..>821
                     /locus_tag="SFZ84_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8203862.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILRRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDRSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTFDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DK"
BASE COUNT          323 a           85 c          138 g          275 t
ORIGIN      
        1 gataaattaa aacattatga aaaaaatcaa aaatcaaaat tagaaagttt tgaaaaagtt
       61 ttacagagtc tgaaaaatca agatattaat attttaaatt cttttgaaga aaatttagaa
      121 aaaattgaaa aattaaaaca acttgaaatg gggcttttaa atgcagatta atcttttaaa
      181 tgattttata aaagcctatg aaaatactta tagtgtgagt tttgatgata gttttaaagg
      241 gcgtattcaa gagctttgca aggaacttaa tgagcctttt atgcacgcaa gttatgcttt
      301 agaaaatgaa ttaaaagagc ttgtgttttc tttggataag aatgttaata tcgctattat
      361 agggcagttt tcaagcggta aatcaagttt gctaaatttg atcttaaggc gtgattgttt
      421 gcctacgggt gttgttcctg ttacttttaa acctactttt ttacgctatg caaaagaata
      481 ttttttaaga gtagaatttg aagatagaag tgatattatc acaaatatag aaaaattagc
      541 cttttatacg gatcaaagaa atgaagtaaa acaagcaaaa agtttgcata tttttgcacc
      601 cattccttta cttgaaaaaa tcactcttgt agatactcca ggtttaaatg caaatgaaaa
      661 tgatacttta acaacttttg atgagcttaa aaatattcat ggggcgattt ggttaagttt
      721 aattgataat gcaggtaaaa aaagtgaaga agatgccata aaagcaaatt tagaactttt
      781 aggagaaaat agcatttgtg tattaaatca aaaagataaa t
//
LOCUS       DARGED010000231          814 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.233, whole genome shotgun sequence.
ACCESSION   DARGED010000231 DARGED010000000
VERSION     DARGED010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.233"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            2..718
                     /locus_tag="SFZ84_001786"
     CDS             2..718
                     /locus_tag="SFZ84_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG8203863.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
BASE COUNT          353 a           85 c          136 g          240 t
ORIGIN      
        1 aatgaataaa tatctcgaac aattagtgct tttatcaaaa atagatcaag aaattgatag
       61 ttatgaacca aaaatagaca gtattaataa gactttaaaa gatgctgagt taaaaataga
      121 aaaaatcaac gcagatttag aaaaaatcga tgaagaaatc aaagatatag aaaatcaaaa
      181 aatacaaaat aatgctcata tttccgagtt ttcagcaaaa attaaagatc tttctaaaaa
      241 aagtggtgcg gtaaaaacag aaaaagaagc taatgcttta aaaattgaag aagatattgc
      301 aaaagaacaa ttagacgctg caaatgatga gattgtaaga ctagataaaa ttttggagaa
      361 taaagaaact tataaaaaag aacttgaaga agaaaaaatc aaacaagagc aaaatattaa
      421 cgagattaga gtaagcatta aatctgaaat ggaagttctt gaaaaagata gaatgagtgt
      481 ttatgataaa aaaactaaac ttgtgagtga gatgaatcaa aaagttttaa gtttttatga
      541 gaaaattcgc aaatgggcga agaatactgc tgtagttcct gttaaaaaac aagcatgcta
      601 tggatgtttt atgaaaattt acgataagac ttatctgtcc gttgtaaaag gtgaagagat
      661 tgtaacttgc cctcattgcg gaagaattct ttataaagag caagaagaac aaaattgatc
      721 tttttttatt attttttaac ttggacggca tttttatttt gtgccgtctt tattcttttg
      781 ctttcttttt taaaatccaa atacaaaatt agtt
//
LOCUS       DARGED010000232          806 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.234, whole genome shotgun sequence.
ACCESSION   DARGED010000232 DARGED010000000
VERSION     DARGED010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.234"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..685
                     /gene="rsmH"
                     /locus_tag="SFZ84_001787"
     CDS             <1..685
                     /gene="rsmH"
                     /locus_tag="SFZ84_001787"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG8203864.1"
                     /translation="EKISHKEELRGILADIGVSSFQLDNNERGFSVNSDFLDMRMNQN
                     SKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGK
                     GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRI
                     VKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRA
                     FYFNNLDNK"
BASE COUNT          337 a          106 c          126 g          237 t
ORIGIN      
        1 agaaaaaatt tcacataaag aagaattaag aggtatttta gcagacattg gagtttcttc
       61 atttcagctt gataataacg aaagaggttt tagtgtaaat tctgactttt tggatatgag
      121 aatgaatcaa aactccaaaa tatcggctta tgagattatt aatacttata caaaagagca
      181 attaacttcc atttttaaag attatggaga attacatgat gcacatttta ttgctgaaaa
      241 aatttgccta gaaagaagta aaaatccaat caaaagtgcc aaagagcttt atcaaatcat
      301 aggaaaaggt aaacaaaatc atagaaaaat ttccaaagct actttagcat ttcaagccat
      361 tagaatagaa gtaaatcaag aacttaaagt gcttaaagat tttcttgaac atttagaaaa
      421 tttaaaacca aaaaattgca ttttagctat cattagcttt cattctttag aagatagaat
      481 agtaaaacaa tttttcaaaa aatggtcaaa aaactgcatt tgtaatgaaa aaataatgcg
      541 ttgcgaatgt ggaaataacc atagcctagg acaaataata actaaaaaag ctataagtgc
      601 gagcaaggaa gaacttttaa aaaattctcg ctctagttgt gctaaaatgc gggcttttta
      661 ttttaataat ttggacaata aataatgcta gaagatgatt ttataaaaga acgccaaaac
      721 atacgccaaa aaatgctgaa attttctcgc gccataaatc aaggcaaacc gcttgatgat
      781 gatttaagag atgaaatttc tagcga
//
LOCUS       DARGED010000233          799 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.235, whole genome shotgun sequence.
ACCESSION   DARGED010000233 DARGED010000000
VERSION     DARGED010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.235"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..426)
                     /locus_tag="SFZ84_001788"
     CDS             complement(<1..426)
                     /locus_tag="SFZ84_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8203865.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFA"
     gene            complement(426..>799)
                     /locus_tag="SFZ84_001789"
     CDS             complement(426..>799)
                     /locus_tag="SFZ84_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203866.1"
                     /translation="RQKPIFLQDGKISFEEWYYFYEDGMSRAILELNNFVYDINAHAF
                     VKLNDLYNTKNQKFQNLLHEKLKNTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEG
                     HFLDENICVEFYEDELKEFKK"
BASE COUNT          301 a          121 c           75 g          302 t
ORIGIN      
        1 cgcaaattca tcttttaaat attctaaata atctgcataa gcctcttgtt tctcaaaatt
       61 taaacgaggt tttgcttcta aaaattctaa aaaatattca cttagactaa gctcactttg
      121 caataaggca agagttaatg tttgagtttt attattttct aaacttttaa aaaaactcga
      181 attttgattt acaaaacctc tttcgataag tttttttaaa tcctccaaag catcaagata
      241 aagatactta tcatttccaa aaattgtcga taataaagta aaggcattga tagaagaaat
      301 agaaacgaca taatttctac aaagttctct aagaatcaaa gcctcatttt tagcacactt
      361 aagctcttta taaatttgag tatcttctat atttttcaaa cttaaaaaat tttttaattt
      421 ttccattatt ttttaaattc cttaagctca tcttcgtaaa attctacgca aatattttca
      481 tctaaaaaat gaccttcaaa aggtagataa caaattttta gttttccatt attaagcaaa
      541 aaattattat taaattgtaa attttgcaga tcttcaaaac actcatcaca tgtattttta
      601 agcttctcat gtaaaagatt ttgaaatttt tgatttttag tattatacaa atcatttagt
      661 tttacaaatg cgtgagcatt aatatcataa acaaaattat ttaattctaa aatagcacgg
      721 ctcataccat cttcataaaa ataataccat tcttcaaaac taatttttcc atcttgtaaa
      781 aaaataggct tttggcgaa
//
LOCUS       DARGED010000234          794 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.236, whole genome shotgun sequence.
ACCESSION   DARGED010000234 DARGED010000000
VERSION     DARGED010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.236"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            22..>794
                     /locus_tag="SFZ84_001790"
     CDS             22..>794
                     /locus_tag="SFZ84_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8203867.1"
                     /translation="MQRDKIDSYLPKKTLVQINKYNNEDLIKLNKAITGGGHKGYFNY
                     DEKSKDPKSPLNPWAFIRVKNEAITLKASLESILPAIQRGVIGYNDCTDGSEEIILEF
                     CKQYPSFIPIKYPYEIQIQNPKSEENKLYSYYNYVASFIPKDEWLIKIDVDHYYDAKK
                     LYKSFYIPRKNYHVISYSRIDFIFNEEKFYVYQNKEGEILKAPGDCLAIQNTNLFWKE
                     ILIEDDTFKWNTAKNNIENAKSYEILKVRNRIYFTTELN"
BASE COUNT          340 a           90 c          112 g          252 t
ORIGIN      
        1 aaaacatttt tactaaaaaa catacaacga gataaaatcg attcttatct accaaaaaaa
       61 actcttgtgc aaattaataa atacaacaat gaagatttaa ttaaacttaa taaagctatt
      121 acaggggggg ggcataaagg atattttaat tatgatgaaa aatctaaaga tccaaaatct
      181 cctttgaatc cttgggcttt tatacgagta aaaaatgaag ctattacctt aaaagcttct
      241 cttgaaagta tattgcctgc tatccaaaga ggtgttatag gatataatga ttgtaccgat
      301 ggaagtgaag aaataattct agaattttgc aaacaatatc cttcatttat accaataaaa
      361 tatccttatg aaattcaaat tcaaaaccca aaatcagaag aaaataaact ctatagctat
      421 tataattatg ttgcaagttt tataccaaaa gatgaatggc ttataaaaat agatgtggat
      481 cattattatg atgcaaaaaa attatataag agtttttata tacctagaaa aaattatcat
      541 gtaattagtt actctaggat agattttata tttaatgaag aaaaatttta tgtttatcag
      601 aataaggagg gggagatttt aaaagctcct ggagattgtt tagcaataca aaacactaac
      661 ttattttgga aagaaatact tattgaagat gatacattta agtggaatac tgcaaaaaat
      721 aatatagaga atgcaaaatc atatgaaatt ttaaaagtta gaaatagaat ttattttact
      781 acagaactta ataa
//
LOCUS       DARGED010000235          740 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.237, whole genome shotgun sequence.
ACCESSION   DARGED010000235 DARGED010000000
VERSION     DARGED010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.237"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>740
                     /locus_tag="SFZ84_001791"
     CDS             <1..>740
                     /locus_tag="SFZ84_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEG8203868.1"
                     /translation="EELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQK
                     ELIVKNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKA
                     KNLQNSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRV
                     IGGGKVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLS
                     HQKALKLAKELNQVFVDEKNLNVYHLQSL"
BASE COUNT          295 a           82 c          114 g          249 t
ORIGIN      
        1 gaagaactga tttttcatta ttatatcgat agagtttttt ctctaaaagg tataggaact
       61 gtcgttacag gcagcttgaa tgaaggaagt atcactttaa atgaaaaaat catctgttta
      121 gacactcaaa aagaactcat tgttaaaaat atacaaaatc acgataccaa tctagagcaa
      181 atcaaagctt gcaaccgtgt ggctttaagt ttaaattgtg attataaaga gttgaaaaaa
      241 ggttatttac taagtaaaaa aggttatttt aaagccttta aagaatgcga tgctttagtt
      301 aaagcaaaaa atttacaaaa tagcaaaatg attttttgcg tgggttcaag acaaatagaa
      361 tgcaaaataa atatattaaa aaaactagaa aatgatgaat tttttgtgca ttttagtttt
      421 gataaaaatg tatttttaag ttttgatgag gcttttattt tattacaaaa caatcgtgtt
      481 ataggcggtg gtaaggtttt aaatccttta agcgaacctt taaaaaaaga acaaaaaaat
      541 aaatttttaa tgtttttgaa aaataaagat tttaaagcgg ctttttcttt cttaaaagac
      601 gcacacaaat acggctttgg cttgctttca agttatcaga gatttaaact ttctcatcaa
      661 aaagcattga aattagcaaa agaattaaat caagtatttg ttgatgaaaa aaatcttaat
      721 gtatatcatt tacaaagtct
//
LOCUS       DARGED010000236          735 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.238, whole genome shotgun sequence.
ACCESSION   DARGED010000236 DARGED010000000
VERSION     DARGED010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.238"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            14..>735
                     /locus_tag="SFZ84_001792"
     CDS             14..>735
                     /locus_tag="SFZ84_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203869.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENALTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAAEESYKYDVDLENVGSKAT
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVS"
BASE COUNT          293 a           63 c          127 g          252 t
ORIGIN      
        1 agaaaggaat ttaatgaaga taaaagttgg gttgattttt tcaggtattg tttgcctttt
       61 tttaacagct tgtgttaatc aggttaaaca aaatacaaca tttgaaaatg ctttaacaca
      121 aaaatattgt ggtgatgatt ttttcaatca aaatttagaa aaaattaaaa aaaatgatga
      181 tgtcatttat acaggattaa atgcaggttt gattgctaga aattgtggtg attttaacaa
      241 aagtaatgta ttttttgatg ctgcggaaga atcttataaa tatgatgtgg atttagaaaa
      301 tgtaggctct aaagcaacta aatttgttgg tacaaccttg cttaatgata ctatagtaga
      361 ttatgatggt tctttatatg aaagaattat ggttaatata tataaagctc taaactatat
      421 ggaagaagat gattatgaaa atgcaagagt tgagtttaat cgtgctttaa tgcgtcaaga
      481 taaggcaaaa gaatattttg ctaaagaaat tgaaaaaaat cgtgctgatt tagataaggc
      541 aaaagaagat aaaaattatg ataaaaatat gaatgaaaat tcaaaagtta tagaagcgca
      601 atatgataac ttatttaaag aatttgatac aacaaaaaat ttcataaatc cttatgcgac
      661 ttatcttgct tcaatatttt tctttatgga taaagattat agaaaagctg cagatttatt
      721 tagagaagta tctat
//
LOCUS       DARGED010000237          698 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.239, whole genome shotgun sequence.
ACCESSION   DARGED010000237 DARGED010000000
VERSION     DARGED010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.239"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..466
                     /locus_tag="SFZ84_001793"
     CDS             <1..466
                     /locus_tag="SFZ84_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203870.1"
                     /translation="DWVIDLNRYKFALDEEGRIIWALYDDIEKGKLKDPRDVDSTSES
                     RKEFDHYMDGYVNGMETRFDADIPNDWGDRQATLFKDTLVLSAKLAALTPPQGYPNAP
                     RYYSPERLEIIYKRHKLDKLLDPRIPAIYRYNFPQELRAKILAYAKEHNIKE"
     gene            545..>698
                     /locus_tag="SFZ84_001794"
     CDS             545..>698
                     /locus_tag="SFZ84_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203871.1"
                     /translation="MSETYEIYTPNGIILDVEKKTNKILLYDGGAKVGKYTQEYSKAL
                     FEAHNIK"
BASE COUNT          270 a           96 c          125 g          207 t
ORIGIN      
        1 agattgggtg attgatttaa atcgatataa atttgctctt gatgaagaag gcaggatcat
       61 ttgggcttta tatgatgata ttgaaaaagg taaattaaaa gatccaagag atgtggattc
      121 tacttctgaa agcaggaaag aatttgatca ttatatggat ggatatgtaa atggaatgga
      181 aactagattc gatgctgata ttccaaatga ttggggtgat cgacaagcca ctttattcaa
      241 agatactcta gtattaagcg ccaaactcgc agccttaact cctcctcaag gctatcctaa
      301 tgctccaaga tactatagcc ctgaaagact agaaattatt tataaaagac ataagcttga
      361 taaacttctt gacccaagaa ttcctgctat ttatagatat aattttccgc aagaacttcg
      421 agctaaaata ctagcttatg ctaaagagca taatataaaa gagtgaaaat aatgaatttc
      481 attagctact actatcatta tgaaaaatgg tttatatatg ggttaaatta agaaaggata
      541 gataatgagt gaaacttacg agatttatac acctaatggt attatattag atgtagaaaa
      601 aaaaacaaat aaaattttat tatatgatgg aggagctaag gtaggcaaat acacccaaga
      661 atattccaaa gctttgtttg aagcacacaa tatcaaac
//
LOCUS       DARGED010000238          674 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.240, whole genome shotgun sequence.
ACCESSION   DARGED010000238 DARGED010000000
VERSION     DARGED010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.240"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>674)
                     /locus_tag="SFZ84_001795"
     CDS             complement(<1..>674)
                     /locus_tag="SFZ84_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8203872.1"
                     /translation="WFFSHGAGAFTLGQFFYHLFKINILDYFCGGDGDIRYYKFYNKL
                     LELKDKRNIITINDIDPSWYGNQHKRDKLFSSFQKITPILFQIRDPIELIKHAYGRKW
                     GNNLAKTKEFDLSYQFNDIITEVEVYNYNLPNTLEGQRPQSFLWKSLIECFDKFNDCF
                     YLDISKIRGEETIHTLNYLSNKFNLKQIKINDKEFVTKSYFKGNLYFLLPLTLYLNKE
                     DLNTNI"
BASE COUNT          248 a          102 c           65 g          259 t
ORIGIN      
        1 aatatttgta tttaagtctt ctttatttaa atacaaagtc aaaggcaata gaaaatataa
       61 atttccttta aagtaacttt ttgttacaaa ctctttatcg ttaatcttaa tttgtttcaa
      121 attaaattta tttgatagat aatttaatgt gtgaatagtt tcttcacctc ttatctttga
      181 gatatctaaa taaaaacaat cattaaattt atcaaaacat tcgattaaag atttccataa
      241 aaacgattgc ggcctttgtc cttccaaagt attaggcaaa ttataattat atacttctac
      301 ttccgttatg atatcattaa attgataact caaatcaaat tcttttgttt tggctaaatt
      361 atttccccat tttctaccat aagcatgttt aatcaattct ataggatccc ttatctgaaa
      421 tagaatagga gttatttttt gaaaagatga aaataattta tctcttttat gctgattgcc
      481 ataccatgat gggtctatat catttatagt aataatattt cttttatctt ttaattctaa
      541 caatttatta taaaatttat aataacggat atccccgtct cctccacaaa aataatccaa
      601 tatattaatt ttaaacaaat gataaaaaaa ttgacctaaa gtaaacgcgc cagcaccatg
      661 gctaaaaaac caca
//
LOCUS       DARGED010000239          669 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.241, whole genome shotgun sequence.
ACCESSION   DARGED010000239 DARGED010000000
VERSION     DARGED010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.241"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            242..>669
                     /locus_tag="SFZ84_001796"
     CDS             242..>669
                     /locus_tag="SFZ84_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8203873.1"
                     /translation="MIQTRFICGSRILFKGIKTKFESILKENKNDFAKLLLENFKEFD
                     IPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNYALNFIDEKNLSELRLAGDFLL
                     SLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHFGAN"
BASE COUNT          236 a           70 c          104 g          259 t
ORIGIN      
        1 ttcacctcca agtgataata tccctttttg tgttttagca agcaaagcat atgcaaataa
       61 tagtctttgt tttaatgaaa gtatttcttt gatttttgtt tataaagata ttaaggcttt
      121 tcatttaaaa cctatgatta aggcttttat cgaaatttta aatgatgcgc atttgcaaat
      181 tgattcggtt atcttagaat ttaatggact ttataatgct agcaatgagc ttaagacttc
      241 tataatacaa actcgtttca tatgtggttc taggatttta tttaaaggga ttaagacaaa
      301 atttgagagt attttaaaag aaaataaaaa tgattttgcc aagcttttgc tagaaaattt
      361 taaagaattt gacattccat ttataaagca agaatttaat atcttaaaag attttggcgg
      421 attaaatcat ttaagatcct tagagagttt gcttgttctt tttaagactt ctccaaaaaa
      481 ttatgcttta aattttatag atgaaaaaaa tttaagcgag ttgcgtttag ctggagattt
      541 tttactttct ttaaaatcag cgatgaattt attaagtgct aaagatgagg atgaattttt
      601 acttattaat gttcatgatt tgagtgaatt aatgtataaa aaagctaaaa aacattttgg
      661 agcaaatga
//
LOCUS       DARGED010000240          638 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.242, whole genome shotgun sequence.
ACCESSION   DARGED010000240 DARGED010000000
VERSION     DARGED010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.242"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>638)
                     /gene="ciaB"
                     /locus_tag="SFZ84_001797"
     CDS             complement(<1..>638)
                     /gene="ciaB"
                     /locus_tag="SFZ84_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG8203874.1"
                     /translation="SAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMKISSEVFD
                     KEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFFKNIEEYK
                     ATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIHLSLLFES
                     EVLIFENNNLKINFDLGHYEKFKELTLKNYHELAKHYALRLDAKEFLSRFCE"
BASE COUNT          231 a          110 c           61 g          236 t
ORIGIN      
        1 atttcacaaa atctacttaa aaactctttt gcatcaagtc ttaaagcata gtgttttgct
       61 aattcatgat aattttttaa agttagttct ttaaattttt cataatgccc taaatcaaaa
      121 tttatcttca aattattatt ttcaaaaatc aatacttcac tttcaaaaag caaactaaga
      181 tgaataagtc cttctgtata ataaggtcta acttcatcaa ccctttgcca agaaataagt
      241 ccaatagctc tttttataag ttcatgaaaa acaggcatta tcaagtcatc ttgttcatga
      301 taaaagaaat ttataagtcc acctgtagta gctttatatt cttctatatt tttaaaaaaa
      361 ccactctgat tcattgtttt ttcggtatca ttagcaataa aaaatatatg accaaattca
      421 tggcctatag ttgatacttc ataaaccctt ttccaaattt tttcctgata aaataaaata
      481 tttcttccaa aatccaaaaa ttctttatca aaaacctcgc tagaaatttt cataaaaggc
      541 tttgttttag cattttcata tacaaaattt ataaaggcaa atattttttt gcccgcctta
      601 gaacttacaa actcatcatt tggaacgact tgagctga
//
LOCUS       DARGED010000241          634 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.243, whole genome shotgun sequence.
ACCESSION   DARGED010000241 DARGED010000000
VERSION     DARGED010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.243"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>634
                     /locus_tag="SFZ84_001798"
     CDS             <1..>634
                     /locus_tag="SFZ84_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8203875.1"
                     /translation="TIVNFLKNNFKTLYMLNTNDDKELEKNQILLNSLEEKDNQIRVI
                     FCVDKLNEGWDVLNLFDIVRLGNKKASKTITTKEAQLIGRGARYYSFKSDLFDFDDEF
                     RFKRKYDSDLENELNALEKLTYHTRNDVEFIKQLNESMNKEGLLFEEEKTRIDLIVNE
                     KIKEIIKNNKIYYANNKRIKKRDLKNFYITRIEMEQKIKGLQIPYFSNSIK"
BASE COUNT          280 a           53 c          102 g          199 t
ORIGIN      
        1 actattgtaa attttttgaa aaataatttt aaaacgcttt atatgttaaa cacaaatgat
       61 gataaagagc tagaaaaaaa tcaaatttta cttaatagct tagaagaaaa agataatcaa
      121 ataagagtta ttttttgcgt tgataaactt aatgaaggtt gggatgtttt aaatcttttt
      181 gatatagtta ggcttggaaa taaaaaggca agtaaaacaa taaccacaaa ggaagcacaa
      241 cttataggaa gaggtgctag atattattct ttcaaaagcg atttgtttga ttttgatgat
      301 gagtttagat ttaaaagaaa gtatgatagt gatcttgaaa atgagttaaa tgctttagag
      361 aaattaactt atcatactag aaatgatgtt gagtttatca agcaactcaa tgaaagcatg
      421 aataaagaag gattattatt tgaggaggaa aaaacacgca tagatttaat agtcaatgaa
      481 aaaataaaag agattattaa aaataacaaa atttattacg ctaataataa aagaatcaaa
      541 aagcgtgatt tgaaaaattt ttacattaca agaattgaga tggaacaaaa aataaaaggt
      601 ttgcaaattc cttatttttc aaattctata aaag
//
LOCUS       DARGED010000242          633 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.244, whole genome shotgun sequence.
ACCESSION   DARGED010000242 DARGED010000000
VERSION     DARGED010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.244"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            120..515
                     /locus_tag="SFZ84_001799"
                     /pseudo
     CDS             120..515
                     /locus_tag="SFZ84_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779670.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          261 a           57 c           70 g          245 t
ORIGIN      
        1 aatgatgcac tgagtaaaag aactattgat tttgtaaata gatttaaact tttaaaacat
       61 cagcccaaca ctacaaattg tcttatgaaa aaacagagaa aattaagagg agttaataaa
      121 tgctagaatt ctttgttaat cttttaatat ttattcttat atttttcttt tttgttttta
      181 tattttctat tattttatat tttatcttta aagtcttttt taaaataaaa aataaaacaa
      241 aaactataaa ttttaaaaca atatttaaaa aacttacttt atttcttttg cctgtatatc
      301 ttttattatt cttagtagga ggatgttctt ataaatatat ggatccgcag tattataagt
      361 ttaagagctt gtgtaaagat atagataata aagtaataat ttacaataaa gcttattggg
      421 aaatattcag caatagagaa aaaggaaata caatgcatga tgaaaaagga gaattctttt
      481 ttaatcaaaa aataaataaa aaaatatatt ttgattttaa aaaatcagaa agcattaatg
      541 tgttgcaaaa aaataaattt actttaacag aagttacatt tgaagattat tatgatggta
      601 ttcattattc aacacactta tcttatattt ata
//
LOCUS       DARGED010000243          633 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.245, whole genome shotgun sequence.
ACCESSION   DARGED010000243 DARGED010000000
VERSION     DARGED010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.245"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..471)
                     /locus_tag="SFZ84_001800"
     CDS             complement(<1..471)
                     /locus_tag="SFZ84_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEG8203876.1"
                     /translation="MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLN"
     gene            530..>633
                     /locus_tag="SFZ84_001801"
     CDS             530..>633
                     /locus_tag="SFZ84_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8203877.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDVEI"
BASE COUNT          217 a           73 c          104 g          239 t
ORIGIN      
        1 gttgagtcct agaatttttt tgccattttt taagacaaga gggttttgaa attttagctt
       61 aaagggaagc tttaagtctt taaaatgagc ttttatacta agtgagtttt ctataaaata
      121 aaggtatttt aaaacttgat gttcttcttt gtgcttgttt ttgtcaaaaa aatatctttg
      181 ttttgtttta agaatatgta agataatctt agaagaaaac gcagatctaa aagcaaagct
      241 aaaatcgatc ttaccaagtt ctttgcgtaa agatagagct tgtttataac gggatagttt
      301 attttctatg atgattttag aattaggaaa ttctttaaaa agtgctgtgg aaaccaaaga
      361 tccataaagg ataaattgag catttttaaa atgttctttt atagcgtata aagcaagtga
      421 agccatcact gcatcgccta gccaagtggg aagatgtata aaaattttca taaatttcct
      481 aaactttgat agaattgttt ttattatttt aacaaaattt aggaaaaata tgccacaact
      541 ttcgatcata atcccgcttt ttaattcttg tgattttatt tcaagggctt tgcaaagttg
      601 tataaatcag actttaaaag atgttgaaat ttt
//
LOCUS       DARGED010000244          625 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.246, whole genome shotgun sequence.
ACCESSION   DARGED010000244 DARGED010000000
VERSION     DARGED010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.246"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>625
                     /locus_tag="SFZ84_001802"
     CDS             <1..>625
                     /locus_tag="SFZ84_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEG8203878.1"
                     /translation="ILLGDRDSEISIVYLSLDIDENIIKEASENSLIITHHPLIFKGL
                     KDLYDKTYPRAFIKEMIYKNISLISMHTNYDLSHLNTYFTEEILGFKIAFKDEFLIYV
                     ENSMSFEALCDWVKKKLNLQILRVSDCGKKDIKRIAICTGSGGDLISKVDADCFLSGD
                     FKYHQALEALSNQISLIDLGHFESERYFSQCLAKDLKNLPLQVIITVS"
BASE COUNT          218 a           62 c          112 g          233 t
ORIGIN      
        1 aattttgctt ggagataggg atagtgaaat ttcaattgtt tatttaagct tagatattga
       61 tgaaaatatc attaaagaag cgagtgaaaa ttctttaatt atcacacacc atcctttgat
      121 atttaaaggt ttaaaagatt tatatgacaa gacttatcct agggctttta tcaaagaaat
      181 gatttataaa aatatttctt taatcagtat gcatacaaat tacgatttaa gtcatttaaa
      241 tacttatttt acggaagaaa ttttaggttt taaaattgct tttaaagatg aatttttaat
      301 ttatgtggaa aattctatgt cttttgaagc tttgtgtgac tgggtgaaaa aaaagttaaa
      361 tttgcaaatt ttacgtgtaa gtgattgtgg caaaaaagac attaagcgca ttgctatatg
      421 tactggaagt ggcggggatt taatttctaa agtagatgcg gattgttttt taagtggaga
      481 ttttaaatat catcaagctt tagaggcgct tagtaatcaa atcagtctta ttgatttggg
      541 tcattttgaa agtgagagat atttttctca atgtttagca aaagacttga aaaatttgcc
      601 gctacaagtt ataataacag tttca
//
LOCUS       DARGED010000245          592 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.247, whole genome shotgun sequence.
ACCESSION   DARGED010000245 DARGED010000000
VERSION     DARGED010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.247"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>592
                     /locus_tag="SFZ84_001803"
     CDS             <1..>592
                     /locus_tag="SFZ84_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8203879.1"
                     /translation="INNLFESKNECINIYFTTIQALFSLFKNERENSLSFEDLKDEKL
                     VFLADEAHHLNSDTKSKNENELKEGWEAIIKRAYESNNENLLFEFSATIPQEFNVLEK
                     YQDKIIYEYTLREFCKEGYSKRIFLVKYDNDSLEHRFLGAVLCSLYRELLAQKYNIIL
                     KPVVLLKSESIKESMQNQEKFIDFIDNLESLHIEDF"
BASE COUNT          239 a           54 c           91 g          208 t
ORIGIN      
        1 ttataaataa tctttttgaa agcaaaaatg aatgcattaa tatatatttt acaactatac
       61 aagctttatt ttctcttttt aaaaatgaaa gagaaaattc tttaagcttt gaagatttaa
      121 aagatgaaaa acttgtattt ttagctgatg aagctcatca tttaaatagt gatactaaaa
      181 gcaaaaacga aaacgagctt aaagaaggtt gggaagctat tataaaaaga gcttatgaaa
      241 gcaataatga aaatttatta tttgaattta gtgctactat tccgcaagaa tttaatgttt
      301 tggagaaata tcaagataaa attatttatg aatacacctt aagagaattt tgcaaagagg
      361 gatattctaa acgtatattt ttagttaagt atgacaatga tagtttagaa catagatttt
      421 taggagccgt gctttgtagt ctttatagag agttgttggc tcaaaaatat aatatcatat
      481 taaagcctgt tgttttactt aagagtgaat ctataaaaga atctatgcaa aatcaagaaa
      541 aatttataga ttttatagat aatttagaaa gcttgcatat agaagatttt ta
//
LOCUS       DARGED010000246          562 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.248, whole genome shotgun sequence.
ACCESSION   DARGED010000246 DARGED010000000
VERSION     DARGED010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.248"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..392
                     /gene="perR"
                     /locus_tag="SFZ84_001804"
     CDS             <1..392
                     /gene="perR"
                     /locus_tag="SFZ84_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG8203880.1"
                     /translation="KKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEYPSISLAT
                     VYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKDAKLYEYQ
                     EHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT          221 a           67 c           80 g          194 t
ORIGIN      
        1 ttaaaaaaca tgagttaaaa gctactccgc aaagactatg tgttttaaaa attttaaaaa
       61 gacatgagca tcctaatatt gatgaattat atacagaaat taaaaaagaa tacccttcaa
      121 tctctttagc gacggtttat aaaaatctta atactttaca agaacaaggt ttagttgttg
      181 aaatcaatgt tttaaatcaa aaaacttgtt acgatatcta tgaagaagaa catattcatg
      241 ttgtttgtac caaatgtggt ggtatagagg atttaagttt taaagatgct aagctttatg
      301 aatatcaaga gcatttagaa aaaaagatag gcaatctcgt caatcatctg tctgtttgtg
      361 cttatgttga tagttgcaaa aagtgtcatt aagcaaaata aggttaaaat aacccatata
      421 ttttaagggt tattttaatg gtttatgaaa ttcaaaaaaa ctttttacta tctgattgca
      481 ctcttttaga gaatttagaa aaagataata taccttttcg aaattctaaa tttgaaactt
      541 tttatactca aataacttca aa
//
LOCUS       DARGED010000247          550 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.249, whole genome shotgun sequence.
ACCESSION   DARGED010000247 DARGED010000000
VERSION     DARGED010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.249"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(49..>550)
                     /locus_tag="SFZ84_001805"
     CDS             complement(49..>550)
                     /locus_tag="SFZ84_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203881.1"
                     /translation="QFSQENKDCLELLIEASQVRILNSYNSCQKLSKDESFQKFLNED
                     FLKLYKNNGYLINENLQNLKNTMQDIMIYYKLRYSFSKDVKDMSKNKNLDILNIDEKD
                     GGTLLYKINNQACVGIELTRHDSRMAMKIYGIENLDKECKLFIQSPSFKDLSYTKKDF
                     KWYYLE"
BASE COUNT          185 a           72 c           56 g          237 t
ORIGIN      
        1 tttaagtgtg gtttttaaaa atttttattt aaaaattaaa gcatttattt attctaaata
       61 ataccactta aaatcctttt ttgtgtagga aagatcttta aaagaaggtg attggataaa
      121 taatttgcac tctttatcca aattttctat cccgtatatt ttcatagcca ttcttgagtc
      181 atgtcttgta agttctattc caacacaagc ttgattgttg attttgtaaa gtaaagtgcc
      241 accatctttt tcatctatat ttaaaatatc caaattctta tttttactca tatcttttac
      301 atctttacta aaagaatatc ggagtttata atatatcata atatcctgca tggtattttt
      361 caaattttgt aaattttcat taatcaaata tccattattt ttataaagtt ttaaaaaatc
      421 ttcattaaga aatttttgaa aactttcatc tttagataat ttttgacaag aattatagct
      481 atttaaaatt ctaacttgac tggcttctat taaaagttca aggcaatctt tattttcttg
      541 tgaaaattgc
//
LOCUS       DARGED010000248          534 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.250, whole genome shotgun sequence.
ACCESSION   DARGED010000248 DARGED010000000
VERSION     DARGED010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.250"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            164..>534
                     /locus_tag="SFZ84_001806"
     CDS             164..>534
                     /locus_tag="SFZ84_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203882.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEQYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFY"
BASE COUNT          220 a           61 c           76 g          177 t
ORIGIN      
        1 aatgttgtta tgttttgggc gtatgataaa aaatgcataa ttagtaataa ttatacagat
       61 tgtgtcggag ttaaacctta taaatacagt atattttcag ataaacctgc aatttattgg
      121 ttttctccaa gtgaaagaga tgcgagaata agcacatttt attttgaaaa atatagaggt
      181 tgatatgtta gaagtagcca taaagaatat atttaaacat aaagatttct tacaaaccag
      241 aaaagaacct tatgctattt atttagccat aaatacaaac ataaaaagtt ataataatat
      301 ttgtcctagc gagcaatatt tttggaaatt taatgatatg aatgagcttg aatgctataa
      361 tccaaaattt ggcatatatc ttggtaaaat tgtttttgat aaaaaaggca acaaactcat
      421 cccaaaatac atacccgcta aatttgaaaa tttagaagaa gaagttaaaa agataaaaaa
      481 tcctttatgg cttgctaata aaaatcctaa ttatattaaa cctaaatttt atga
//
LOCUS       DARGED010000249          528 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.251, whole genome shotgun sequence.
ACCESSION   DARGED010000249 DARGED010000000
VERSION     DARGED010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.251"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>528
                     /locus_tag="SFZ84_001807"
     CDS             <1..>528
                     /locus_tag="SFZ84_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG8203883.1"
                     /translation="MRFYVASALSDNHEYSWDKIDILNEKSILFNNIDDLQDKIFETN
                     KCKYLPKIYGIYKNIYDINFNELPNSFVLKTNHDCGGYVIVENKQEFLRDTVVFSNAM
                     KKLKKHLEWNYYSVFREWHYKDIEPRVFAEELLLGENKKPADTYKFHIFDKENLSNNF
                     IQVTTDRFDNYQRAM"
BASE COUNT          216 a           47 c           80 g          185 t
ORIGIN      
        1 gatgagattt tatgtagcta gcgctttgtc tgataatcat gaatatagtt gggataaaat
       61 cgatatatta aatgaaaaat ctattttatt taataatata gacgatttac aagataaaat
      121 ttttgaaacc aataaatgca aatatcttcc aaaaatatat gggatatata aaaatatata
      181 tgatattaat ttcaacgaat tacctaattc ttttgtttta aaaactaatc atgattgtgg
      241 aggttatgtt atagttgaaa ataaacaaga atttttacga gatactgttg ttttttcaaa
      301 tgctatgaaa aaattaaaaa aacatttgga atggaattat tatagtgtat ttagagaatg
      361 gcattataag gatatagagc ctagagtctt tgcagaagaa ttattgttgg gagaaaataa
      421 gaaaccagca gatacatata aatttcatat ttttgacaaa gaaaatttat ctaacaattt
      481 tatacaagtt acaacagaca gatttgataa ttatcaaagg gctatgtt
//
LOCUS       DARGED010000250          519 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.252, whole genome shotgun sequence.
ACCESSION   DARGED010000250 DARGED010000000
VERSION     DARGED010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.252"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            82..>519
                     /gene="cetC"
                     /locus_tag="SFZ84_001808"
     CDS             82..>519
                     /gene="cetC"
                     /locus_tag="SFZ84_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG8203884.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEKKSGINAGVSALMDIV"
BASE COUNT          179 a           52 c           84 g          204 t
ORIGIN      
        1 caattcagtt tgctttttgt tatttattat tggtaataat tctatttttg atttatttgt
       61 tttattggga tgttttaaat tatgaaagaa atagttttgt ctgaaaatgc tttaattact
      121 tctaaaacag atcttaaggg gaatatcatt tatgccaata atgacttttt aaaatacgca
      181 ggttataaag ttgatgaact tttgtataaa tctcataata tagtaagaca tgaagatatg
      241 ccacgcactg tatttaaatg tctttgggat tatattcaaa aaggagatga aatttttgca
      301 tttgtgaaaa ataaagccaa agatggtaat ttttactggg tttttgcaaa tgtaagtgct
      361 tcatttgata ctaatggaaa tatcatcaat tattattctg ttcgtcgtgc acccaataga
      421 aaatctcttt ctataattga agaagtttat aaaattttac ttgaaaaaga gaaaaaatca
      481 ggtattaatg ctggagtttc agctttaatg gatattgta
//
LOCUS       DARGED010000251          516 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.253, whole genome shotgun sequence.
ACCESSION   DARGED010000251 DARGED010000000
VERSION     DARGED010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.253"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..164
                     /locus_tag="SFZ84_001809"
     CDS             <1..164
                     /locus_tag="SFZ84_001809"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203885.1"
                     /translation="KQDNLQEKEGDEEEKNEEYTESATKNKQSQKLPPNFIGRLATTI
                     IIEDGLYMG"
     gene            183..>516
                     /locus_tag="SFZ84_001810"
     CDS             183..>516
                     /locus_tag="SFZ84_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203886.1"
                     /translation="MSETYKIYTPNGIAVKVDKETNKIYFVESLDSHPPAKGNYTEEY
                     SKALFEAHNIKRNSPYKDYKPQYLDPNFYTGQSSTLLEFKEWQSIYLKDPIKGAIAPW
                     TKAEKAYYK"
BASE COUNT          232 a           80 c           79 g          125 t
ORIGIN      
        1 agaaacaaga caatttacaa gaaaaagaag gtgatgaaga ggaaaaaaat gaggaatata
       61 cagaaagtgc aactaaaaac aaacaatccc aaaaattacc gcctaacttc ataggcagat
      121 tagctactac tataatcata gaagatggtt tatatatggg ataaattaag aaaggataaa
      181 taatgagtga gacttataaa atttatacac ctaatggaat agctgtaaaa gtagataaag
      241 aaacaaacaa aatatatttt gtagaaagtt tagattcaca tccaccagca aagggcaact
      301 ataccgaaga atattccaaa gctttgtttg aagcacacaa cattaaacga aactccccct
      361 acaaagacta taaaccccaa tacctagatc ctaactttta tacagggcaa agttctactt
      421 tacttgaatt taaagaatgg caaagtatat atttaaaaga tcctataaaa ggagctatag
      481 ctccttggac taaagcagaa aaagcttatt ataaat
//
LOCUS       DARGED010000252          475 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.255, whole genome shotgun sequence.
ACCESSION   DARGED010000252 DARGED010000000
VERSION     DARGED010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.255"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>475
                     /locus_tag="SFZ84_001811"
     CDS             <1..>475
                     /locus_tag="SFZ84_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SelB C-terminal domain-containing protein"
                     /protein_id="HEG8203887.1"
                     /translation="EKNPYAMLSAHSLALRITWASENFCELGLKEMSNLLDFQNGIYF
                     KKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYDFLELDRKSGDNILKKLTQKGLV
                     VRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMKEYFNLSRKYAIAYLEYLDK"
BASE COUNT          195 a           61 c           66 g          153 t
ORIGIN      
        1 ttgaaaaaaa tccttatgcc atgctttcag cacattcttt agctttaagg attacttggg
       61 caagtgaaaa tttttgcgaa ctcgggctta aagagatgtc aaatttattg gattttcaaa
      121 atggaattta ttttaaaaaa ggcatagatt ttgaaaaact tcaagaaaaa aacaataacc
      181 aaatgtatga aattttaaaa aaacaaggta ttaaacccga agctccttat aatctttatg
      241 attttttaga acttgataga aaaagcggag ataatatact caaaaaactt acccaaaaag
      301 gcttagttgt aagactttca cacaatcttt ttatagaaaa acaagctctt gaaaaactta
      361 tgcaagaatg tttaaattta ttaaaaaatc aaagtcttga tgtgcaaagt atgaaagaat
      421 atttcaatct ttcaagaaaa tatgctattg cttatttaga atacttagac aaatt
//
LOCUS       DARGED010000253          460 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.256, whole genome shotgun sequence.
ACCESSION   DARGED010000253 DARGED010000000
VERSION     DARGED010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.256"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>460
                     /locus_tag="SFZ84_001812"
     CDS             <1..>460
                     /locus_tag="SFZ84_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8203888.1"
                     /translation="NLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELEL
                     DYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALN
                     LGQQISISKIFIELKKILKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKI"
BASE COUNT          196 a           44 c           55 g          165 t
ORIGIN      
        1 aaatttacaa attaaaattc tttgccttta taatttggat tttatcccta atttagaaaa
       61 aattaaaatt cccatcatct taagtacaaa tataaaagat ttaaatataa atgggtttga
      121 agaacttgaa cttgattatt ttgattttga agaatttatt agtgtaagta agaaaaattt
      181 acctataaat aatttagtag gtcttttttt gcaaagtgga cgcagtaaat ttggagaaaa
      241 aaacatactt ctaagacaaa gctttactct tttagaatta gaaattttaa agtatttagc
      301 tttaaatttg ggtcagcaaa tcagtatttc taagatattt atagaactta aaaaaatatt
      361 aaaaacttca aaagatagtg tttatcaagc tataaaaaaa ttagaaaata cttatgtgat
      421 ctatacttta aaacatgatg aaaaaaaact tcaaaagatt
//
LOCUS       DARGED010000254          456 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.257, whole genome shotgun sequence.
ACCESSION   DARGED010000254 DARGED010000000
VERSION     DARGED010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.257"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..402)
                     /locus_tag="SFZ84_001813"
     CDS             complement(<1..402)
                     /locus_tag="SFZ84_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203889.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDD"
BASE COUNT          166 a           74 c           51 g          165 t
ORIGIN      
        1 atcatcatta aaacctataa aatcaagact acgctttata cgaatgccat cttgcgtttc
       61 aacaagttct aaagtagttg ttcctaaatt ttctccttga aaatttttat tatcatatgt
      121 aagcatttta gaagaattga ttttatattt tttacgctca tcctgccaaa aatcatttgt
      181 cttaacgagc ggaatctcta aatttccatt tatatcatca ataattaaaa aactagaact
      241 tgtttgattt ttatccctgt caaaaagtgg agtcataggc gcattatcat aaactatggc
      301 aaaaatttct ttatcctgca aatgataaaa atacaattca cctttataaa cttgcgctaa
      361 agctagattt acaaagcaaa ataccagtaa aaaaaatttc aaactctatc ctttaatttt
      421 gaatatgcgt taagataatt ttagtatgtg aaattt
//
LOCUS       DARGED010000255          450 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.258, whole genome shotgun sequence.
ACCESSION   DARGED010000255 DARGED010000000
VERSION     DARGED010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.258"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..416
                     /locus_tag="SFZ84_001814"
     CDS             <1..416
                     /locus_tag="SFZ84_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8203890.1"
                     /translation="SQKLYLCRLRANSISNHDKKITKANVSEYFKDIYETFGENAKEA
                     KNYLKAASRVITALKLIEFFKDQKSENALAIKETFLPCYAKKALMIKKFKKDPLNLKE
                     QLVLIKPFIQTKLPYDIWKFWQKIKKIFNNKNIKN"
BASE COUNT          205 a           47 c           58 g          140 t
ORIGIN      
        1 tatcacaaaa gttgtattta tgccgtttaa gagcaaacag tatatcaaat catgataaga
       61 agattacaaa agcaaatgtg tcagagtatt ttaaagatat atatgaaact ttcggggaaa
      121 acgctaagga agcaaaaaat tatttaaaag cagcaagcag ggttataact gctttaaaat
      181 tgatagaatt ttttaaagat caaaaaagcg aaaatgcact tgctataaaa gaaacatttt
      241 taccttgcta tgccaaaaaa gctttaatga ttaaaaaatt taaaaaagat cctttaaatt
      301 taaaggaaca attagtttta attaagcctt ttattcaaac aaaacttcct tacgatattt
      361 ggaaattttg gcaaaaaata aaaaaaatat ttaataataa aaatataaaa aattaattaa
      421 tttttaggta taatcactat aattatagga
//
LOCUS       DARGED010000256          447 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.259, whole genome shotgun sequence.
ACCESSION   DARGED010000256 DARGED010000000
VERSION     DARGED010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.259"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>447)
                     /locus_tag="SFZ84_001815"
     CDS             complement(<1..>447)
                     /locus_tag="SFZ84_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8203891.1"
                     /translation="ILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVR
                     ANFLFTLKTYGIKEDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVR
                     AKYYLLDEPSAFLDKNTTLLFKKAILKMHENFNIGFLIASHDKHFL"
BASE COUNT          165 a           63 c           47 g          172 t
ORIGIN      
        1 tctaaaaaat gtttatcatg acttgcgatt aaaaaaccta tattgaaatt ttcatgcatt
       61 ttaagaatag cttttttaaa taaaagtgta gtatttttat ccaaaaaagc acttggttca
      121 tcaagtaaat aatacttcgc tcttacgctt aaagctatag caaaagctat tttttgactt
      181 tgtcctgatg aaagttcatt aggatgttta cttaaaagac tttcatctaa atttaaaaac
      241 atcaaacttt cttttatgcg ttcttcaata tcttctttaa tcccataagt ttttaaggta
      301 aataaaaaat ttgcccttac actacgattt aacaaaatag gctctggaaa aagcaaataa
      361 atttcacgct tttgtttatt attaggttta aaatttccaa aataagaaat attttttgaa
      421 aaatctcctt ctaaaaattt taatatt
//
LOCUS       DARGED010000257          446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.261, whole genome shotgun sequence.
ACCESSION   DARGED010000257 DARGED010000000
VERSION     DARGED010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.261"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>446
                     /locus_tag="SFZ84_001816"
     CDS             <1..>446
                     /locus_tag="SFZ84_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8203892.1"
                     /translation="GKSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLR
                     KQIQYCFQDQKMALNPYKKIRNLIQDGLENFNLQKNDNLILEFFDFFSLKKQILEQKP
                     YELSGGEATRVGLIRALVLNPKLLILDEITSALDIKTSKEILTFLY"
BASE COUNT          169 a           53 c           75 g          149 t
ORIGIN      
        1 aggtaaaagt ggtgcaggta aaagcacatt agctagaatt ctttgttttt tagaagatcc
       61 aagtgaaggt gaggtatggt atgaaaatct taacttgcac aagcttgata aaaacaaaca
      121 aagactttta agaaagcaaa ttcagtattg ctttcaagat caaaaaatgg ctttaaaccc
      181 ttataaaaaa atcagaaatc ttatacaaga tggtttggaa aattttaatt tacaaaagaa
      241 tgataacttg attttagaat tttttgattt ttttagtcta aaaaaacaaa ttttagaaca
      301 aaagccctat gagttaagcg gaggagaagc cacacgtgta ggtcttatcc gtgctttggt
      361 tttaaatcct aaattgttga ttttagatga aattacttca gcgcttgata ttaaaacttc
      421 taaagaaatt ttaacttttt tatatg
//
LOCUS       DARGED010000258          416 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.263, whole genome shotgun sequence.
ACCESSION   DARGED010000258 DARGED010000000
VERSION     DARGED010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.263"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..193
                     /locus_tag="SFZ84_001817"
     CDS             <1..193
                     /locus_tag="SFZ84_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203893.1"
                     /translation="LWMNNFNFLKDNNLSLIQKEKDLFEKDLKDLREIFKKNAFEIGI
                     WWFSKEKEDLEKRINESLK"
     gene            190..>416
                     /locus_tag="SFZ84_001818"
     CDS             190..>416
                     /locus_tag="SFZ84_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8203894.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVS"
BASE COUNT          176 a           26 c           64 g          150 t
ORIGIN      
        1 tttatggatg aataatttta attttttaaa agataataac ttaagtttaa ttcaaaaaga
       61 aaaagatctt tttgaaaaag atcttaaaga tcttagagaa atttttaaaa aaaatgcttt
      121 tgaaataggt atttggtggt tttctaaaga aaaagaagac ttagaaaaaa gaataaatga
      181 gagtttaaaa tgagatttga tttttttgtt tcaaagcgtt taaatatcag tagaaataaa
      241 gccttagagc ttatagaaaa tgaagagatt ttacttaatg gtaagagttt taaagcttct
      301 tttgatgtaa aaaatttttt agaaaattta aaaaaaacgc aagatttaaa tcctgaagat
      361 atacttttag ccaatgagtt aaaattggat cttttaagtg aaatttatgt ttcaag
//
LOCUS       DARGED010000259          408 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.264, whole genome shotgun sequence.
ACCESSION   DARGED010000259 DARGED010000000
VERSION     DARGED010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.264"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>408)
                     /locus_tag="SFZ84_001819"
     CDS             complement(<1..>408)
                     /locus_tag="SFZ84_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8203895.1"
                     /translation="FHACEFNKIACFYGVTFDKAPNFSACYFKEPKAVNLINVDIDKL
                     DFKSVEKYIEDNYQDETCENKQEITEEQRNNNCKLKCAKNLKDSFRVIKDVLITQNNK
                     LEVQEWHKLELYAKEKELEIQLSKNKNDNLKKES"
BASE COUNT          121 a           65 c           39 g          183 t
ORIGIN      
        1 gattcttttt ttagattgtc atttttattt ttacttaatt gaatttccaa ttctttctct
       61 ttcgcataaa gttctaattt atgccattct tgaacttcta atttattgtt ttgagtaatt
      121 aaaacatctt ttataaccct gaaagagtct tttaaatttt tggcacattt taatttacaa
      181 ttattattac gctgttcttc tgttatttct tgtttatttt cacacgtctc atcttgataa
      241 ttatcttcta tatatttctc cactgattta aaatctagct tatctatatc gacattgatt
      301 aaatttacag cttttggttc tttaaaataa caagcactga aattcggagc tttatcaaat
      361 gtaactccat aaaaacaagc tattttatta aattcacacg cgtgaaaa
//
LOCUS       DARGED010000260          398 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.265, whole genome shotgun sequence.
ACCESSION   DARGED010000260 DARGED010000000
VERSION     DARGED010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.265"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..304)
                     /locus_tag="SFZ84_001820"
     CDS             complement(<1..304)
                     /locus_tag="SFZ84_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8203896.1"
                     /translation="MEKFIERLLEEDIKFEKDVNNGLSDINIFDALNIETKENYHSKF
                     IAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFENLNIEDIKSVETEACIKDNRRID"
BASE COUNT          136 a           61 c           24 g          177 t
ORIGIN      
        1 tatctatcct tctattatct tttatgcagg cttctgtttc tacgcttttt atatcttcta
       61 tgtttaaatt ttcaaatttc gtatttacta aactcttacc aagtttttct aaaaatacct
      121 ttgcaaaatt tttttgataa tgatccttat ttatatcaat taaataagct ataaatttag
      181 aatgataatt ttcttttgtt tcaatattca aagcatcaaa tatatttata tcactcaaac
      241 cattattcac atctttttca aatttaatat cttcttcaag caacctttca ataaattttt
      301 ccatgtatca ctttccaaat tttatacaat tttacatgta aataaatttt taattacaaa
      361 ctaaaaaaac tgattattaa ttttataggc aagttaag
//
LOCUS       DARGED010000261          375 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.267, whole genome shotgun sequence.
ACCESSION   DARGED010000261 DARGED010000000
VERSION     DARGED010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.267"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>375
                     /locus_tag="SFZ84_001821"
     CDS             <1..>375
                     /locus_tag="SFZ84_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG8203897.1"
                     /translation="DGDMKIIYSIVENPENYYFLYMGYCNDMFGKLYFGASERIKWQL
                     SYRIGKLLIDLKNPVQILKFPFKLFLEIKQFKFEQKIYKTTIKFYPNLQLPPLEEYSD
                     YEQALKTKKHLSYILGKSFINNP"
BASE COUNT          142 a           43 c           50 g          140 t
ORIGIN      
        1 gatggtgata tgaaaataat ttattctata gttgaaaacc cagaaaatta ttattttctc
       61 tatatggggt attgtaatga tatgtttggt aagttatatt ttggtgcctc tgaaaggatt
      121 aaatggcaat tatcttatag aataggtaaa cttttgattg atcttaaaaa tccagtacaa
      181 atcttgaaat ttccatttaa attgtttttg gagattaaac aatttaaatt tgaacaaaaa
      241 atttataaaa ctacaattaa attttatcca aatttacagc ttccccctct agaggaatat
      301 tctgattatg aacaggcatt gaaaactaaa aaacatttaa gctatatttt aggaaaatct
      361 tttatcaata atcct
//
LOCUS       DARGED010000262          364 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.denovo.268, whole genome shotgun sequence.
ACCESSION   DARGED010000262 DARGED010000000
VERSION     DARGED010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.denovo.268"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(132..>364)
                     /locus_tag="SFZ84_001822"
     CDS             complement(132..>364)
                     /locus_tag="SFZ84_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8203898.1"
                     /translation="NVEKNKEVKVGDVLDYFKKNISVAKSYKDILDEELVYIKQHRPD
                     IVASWKYYQEFERMCKELDENNQNPSLSFSNQ"
BASE COUNT          117 a           58 c           41 g          148 t
ORIGIN      
        1 tgttctatca cagtttgacc tagtttataa gctaaatggt tttttactct ttctatggct
       61 gaatttgggt taagcatggg tttttccttt aaaataaatc aatcaaaaaa acaagaaata
      121 attatattca attattgatt agaaaatgat aaagatgggt tttgattatt ctcatctaac
      181 tctttacaca ttctttcaaa ttcttggtag tatttccaag aagctactat atctggacga
      241 tgttgcttga tgtaaaccaa ttcctcatct aaaatatcct tataagattt tgctacactt
      301 atattctttt taaaataatc caatacatcg cctactttca cttctttatt tttttcaaca
      361 ttaa
//
LOCUS       DARGED010000263         3897 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.guided.125, whole genome shotgun sequence.
ACCESSION   DARGED010000263 DARGED010000000
VERSION     DARGED010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.guided.125"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..343
                     /locus_tag="SFZ84_001823"
                     /pseudo
     CDS             1..343
                     /locus_tag="SFZ84_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
     gene            415..789
                     /locus_tag="SFZ84_001824"
     CDS             415..789
                     /locus_tag="SFZ84_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HEG8203899.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLIEGMKQAQGITEQLKAENALEW
                     TGCLNNIRACAREIVEKEIIFA"
     gene            1156..3075
                     /gene="tet(O)"
                     /locus_tag="SFZ84_001825"
     CDS             1156..3075
                     /gene="tet(O)"
                     /locus_tag="SFZ84_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEG8203900.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCIPSNGEIVPADHACPGEIVILADDTLKLNDILGNEKLLP
                     HKTRIDNPMPLLRTTVEPQKPEQREALLNALAEIADTDPLLHFDIDTVTHEIMLSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            3127..3300
                     /locus_tag="SFZ84_001826"
     CDS             3127..3300
                     /locus_tag="SFZ84_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEG8203901.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT         1253 a          651 c          851 g         1142 t
ORIGIN      
        1 gctttataaa aaaatcaatg ctcatatggc tttgctttta agtggtttac ttttactttc
       61 cttagctgct atttttggac tttctccaca cattgtcgct aaaggttctt taaatttagg
      121 tttttttgat atttttcaag ttttcaatca aaccatgtca aatacattag cagggcttgg
      181 acttacactt atgactatag caggtttttc tgcttatatg gatcatgtag gggcttctta
      241 tgcacttttt aaagtttttg aaaaaccttt aaaagccgta aaatctcctt atgttttact
      301 catagttgct tattttatcg tgcaattttt agttcttttc atccgccgga acggacaatg
      361 taggacggat tttgcggaca ttcaaaataa aaaagaatgt ggaggtaaca gacaatggca
      421 aaatcattat ttgaggaact gggcggcaaa tacgaaaggc aaggggatta tttgataccg
      481 tgcttaactg tacccgccga agaagaacag gcaataggca tctgggggca acggcattta
      541 gattatctaa aacagtaccg taaagttaca tacaccaatc ttcttacaag cggcaggcta
      601 aacgcctacc ttgccgacat caacagacag gcacaggaac gctttgaaag gctcatagag
      661 ggtatgaaac aggcacaggg cataacggaa cagctaaagg cagaaaacgc cttagaatgg
      721 acaggatgcc tcaataacat aagggcttgt gcgagggaga ttgtggaaaa ggaaattatt
      781 tttgcataaa cagatgatta gtggcagggg gaaatcctgc cgctttttct gctttagttt
      841 gtcagcttga caaataaagg gttaaggaat ataattagat tcagtattat acaaggagtt
      901 aataaatatg cggcaaggta ttcttaaata aactgtcaat ttgatagtgg gaacaaaaag
      961 tagcagtccc gtttcacttt taatatgggg cttagttttt tgtacccagt ttaagaatac
     1021 ttttatcatg tgattttata tgcccgaaaa catataagtg ttttggggct attggagtta
     1081 tttacccagt gataggagta tttatcactg ggtattttta tgcccttttt tgggtgttga
     1141 taggaggaaa atcacatgaa aataattaac ttaggcattc tggctcacgt tgacgcagga
     1201 aagacaacat taacggaaag tttattgtat accagtggtg caattgcaga actagggagc
     1261 gtagatgaag gcacaacaag gacagataca atgaatttgg agcgtcaaag gggaatcact
     1321 atccagacag cagtgacatc ttttcagtgg gaggatgtaa aagtcaacat tatagatacg
     1381 ccaggccata tggatttttt ggcggaagta taccgttctt tatccgtatt agacggagca
     1441 gtattattag tttctgcaaa ggatggcata caggcacaga cccgtatact gtttcatgca
     1501 ctacagataa tgaagattcc gacaattttt ttcatcaata aaattgacca agaggggatt
     1561 gatttgccaa tggtatatcg ggaaatgaaa gcaaagcttt cttcggaaat tatagtgaag
     1621 caaaaggttg ggcagcatcc ccatataaat gtaacggaca atgacgatat ggaacagtgg
     1681 gatgcggtaa ttatgggaaa cgatgaacta ttagagaaat atatgtcagg gaaaccgttt
     1741 aaaatgtcag aactggaaca ggaagaaaac aggagattcc aaaacggaac gttatttccc
     1801 gtttatcacg gaagcgctaa aaacaatctg gggattcggc agcttataga agtaattgcc
     1861 agtaaatttt attcatcaac gcctgaaggt caatctgaac tatgcgggca ggtttttaag
     1921 attgaatatt cagagaaaag gcggcgtttt gtttatgtgc gtatatatag cggaacattg
     1981 catttgaggg atgttattag aatatctgaa aaagagaaaa taaaaatcac agagatgtgt
     2041 attccgtcaa atggtgaaat cgtcccggct gaccatgcct gtccgggaga aattgttatt
     2101 ttagctgatg atactttgaa actgaacgat atcctgggaa atgaaaaact cctgcctcac
     2161 aaaacacgga ttgataatcc catgccatta cttcggacaa cggtagagcc gcaaaagccg
     2221 gagcaaaggg aagccctgtt aaatgccctc gcagagattg ctgatacaga ccctcttttg
     2281 cattttgaca ttgatactgt tacccatgag attatgttat cttttttggg gaatgtgcag
     2341 atggaagtca tttgtgccat ccttgaggaa aaatatcatg tggaggcaga aataaaagag
     2401 cctactgtta tatatatgga aagaccgctt agaaaagcag aatataccat ccacatagaa
     2461 gtcccgccaa atcctttctg ggcttctgtc gggttgtcca tagagccgct ccctattgga
     2521 agcggagtgc agtatgaaag cagagtttca cttggatatt taaatcaatc gttccaaaat
     2581 gcggttatgg agggggttct ttatggctgc gagcaggggc tgtatggatg gaaagtgaca
     2641 gactgtaaaa tctgttttga atatggattg tattatagtc ctgtaagtac ccccgcagac
     2701 tttcggctgc tttcccctat cgtattggag caggctttaa aaaaagcagg gacagaacta
     2761 ttagagccat atctccactt tgaaatttat gcaccgcagg aatatctctc acgggcgtat
     2821 catgatgctc caaggtattg tgcagatatt gtaagtactc agataaagaa tgacgaggtc
     2881 attctgaaag gagaaatccc tgctagatgt attcaagaat acaggaacga tttaacttgt
     2941 ttcacaaatg ggcagggagt ctgcttgaca gagttaaaag gataccagcc agctattggt
     3001 aaatttattt gccaaccccg ccgcccgaat agccgtatag ataaggttcg gcatatgttc
     3061 cacaagttag cttaacagct tgcaaaagtc atataaaatg agatttgaaa ggattagaga
     3121 ctaattatga tgaaatgcga atggatattg tgtcctgttt gtgggagcaa aacccgtaat
     3181 aaaattagga aggacactgt tttggagaat tatccccttt attgtccaaa atgcagacaa
     3241 gaaagattga ttaaagttga caacttgaag ataactgtca tcaaagagcc agacgcttaa
     3301 gacgcagagc cgatgaaatt gtggaacaat tcacgaatca tcggctcttt ttgtttcgta
     3361 tttgaaagaa caaactcacc aaataaaaaa aacgatattc gggtgggtta ttttgttata
     3421 ccctaaatta ccctctgaat ttgtttttaa atttggaggg atttttttat gtcctttttt
     3481 cgggcagtta tctatctgct catacgaagc aaaatttatc aatacatagc atatcagaga
     3541 acggcaggaa accagttaaa aaaatttctg ccagtgcaac ggtacttctc accttgaaag
     3601 tagaagtaca aaggctttta gtgcttttgg gtattacttt ttatttttaa agcataatag
     3661 acccattaaa atgctttaaa tggctagttg atgtttaagc tgaaatgaaa ttctagtttt
     3721 tctttttggt gtaaaagggc gaagccctaa ttttcattgg atggctagaa tattataaaa
     3781 attcatttga cataattagt atacgcgtgc gcgtggggga cacacacata gctaaaaaat
     3841 taaaaatact atatatttaa atcattataa aatcaatgtt ttagcttatc ctatgaa
//
LOCUS       DARGED010000264         1780 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37D_S14
            SAMN11268437-rid18063753.guided.176, whole genome shotgun sequence.
ACCESSION   DARGED010000264 DARGED010000000
VERSION     DARGED010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268437
            Sequence Read Archive: SRR8796671
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741615.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741615.1
            Genome Coverage       :: 51x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:23:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 51 of 68
            Pseudo Genes (incomplete)         :: 17 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268437-rid18063753.guided.176"
                     /isolate="MattSeq37D_S14"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            175..948
                     /locus_tag="SFZ84_001827"
     CDS             175..948
                     /locus_tag="SFZ84_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEG8203902.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(1033..>1780)
                     /locus_tag="SFZ84_001828"
     CDS             complement(1033..>1780)
                     /locus_tag="SFZ84_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8203903.1"
                     /translation="IIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYA
                     LFPNMNIKENIAYAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALARE
                     PKILLLDEPLSALDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKN
                     GKIIKDFPKNEFFTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEF
                     LKAYQDVKIGDTLLLSIKAFNPIIVGKLDK"
BASE COUNT          645 a          224 c          262 g          649 t
ORIGIN      
        1 agcatataat ttttcataaa tagtaaatga atgataaagt aagttatatt taatcgatgg
       61 attgctttaa tggttacaat tttagaaaat ttcagttcat gttaaaggat atttaaataa
      121 aataaagctt taaaaagtat tttgtttaaa attatttaaa tagaaagata ttttatgaaa
      181 aaaataactt tatttttact tttcttaaat ttagtgtttg ggcaagataa gatattaaat
      241 aattggttta aagagtataa tacaagcggc acttttgttt tttatgatgg aaaaacttgg
      301 gcgagtaacg acttttcaag ggctatggag actttctctc ccgcttccac ttttaaaatt
      361 tttaatgctc taattgcact tgatagtggt gtgataaaaa ctaaaaaaga aattttttat
      421 cactatagag gtgaaaaagt atttttatct tcttgggcgc aagatatgaa tttaagttca
      481 gctataaaat attctaatgt tcttgctttt aaagaagtgg caagaagaat tggtatcaaa
      541 actatgcaag aatatttaaa caagcttcat tatggtaatg ctaaaatttc caagatcgat
      601 actttttggc ttgacaactc actaaaaata agcgctaaag aacaagcaat tttgcttttt
      661 agactttcac aaaatagctt acctttttct caagaagcaa tgaatagtgt taaggaaatg
      721 atttatttaa aaaatatgga aaatttagag ctttttggaa aaacaggttt taatgatgag
      781 caaaaaattg cttggattgt aggttttgtg tatttaaaag atgaaaataa atataaggct
      841 ttcgcgctaa atttagatat tgataaattt gaagatttat ataaaagaga aaaaatttta
      901 gaaaaatatt tagatgaact tgtaaaaaaa gttaaaaatg atggctagtg agtatttcgt
      961 aaaatgcaaa aatacttaat tgtatgattt gcgtacactt aaagtactca ttaaaaaatt
     1021 aaatttttgc tcttatttat caagttttcc tacgatgata gggttaaagg cttttatgga
     1081 tagcaaaagc gtatcgccga tttttacatc ttgataagct tttagaaatt cctcttcact
     1141 gagagtgatt ttaataatat cttgatttaa aagcaaggtt aaaaccacta aaatatcact
     1201 ttttttaatt tctagcaaag ttgcacttaa gcgtaatttt gcgctgatat ttgaatgagt
     1261 aaaaaattca tttttaggaa aatctttaat aatttttccg tttttaagct ctaaaattct
     1321 atgacttaac ttataaattt cagctagatc atgacttacc aataaagtac ttattttaaa
     1381 atactctaaa atcttggtta attcatcttg taaattggca cgcattttaa aatccaaagc
     1441 actcaaaggt tcatctaaaa gcaagatttt tggttctctt gctaaagctc ttgctaaagc
     1501 tactctttgt gcctgccccc cacttaaatg tttaggataa attttagcta aattttcaag
     1561 cttcattaag gctaaaagct cgctaacctt tgctttagaa ctagcggcat aggcgatgtt
     1621 ttcttttata ttcatatttg gaaaaagcgc ataatcttga aaaacaaaac caatttttct
     1681 tttttgtaaa gctaaactaa aattttttga agaatcaaac caaagttcat tatctacttc
     1741 tatacgcccc aatttaggct ttataagtcc cgctatgatt
//
